Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04209.t1 | XP_003625416.1 | 88.9 | 63 | 7 | 0 | 58 | 120 | 21 | 83 | 1.00E-22 | 117.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04209.t1 | F4JZT3 | 55.6 | 63 | 28 | 0 | 58 | 120 | 17 | 79 | 4.3e-14 | 79.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04209.t1 | G7KYH3 | 88.9 | 63 | 7 | 0 | 58 | 120 | 21 | 83 | 7.2e-23 | 117.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04209.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04209.t1 | MTR_7g098910 | 88.889 | 63 | 7 | 0 | 58 | 120 | 21 | 83 | 5.41e-35 | 121 |
| MS.gene04209.t1 | MTR_0022s0450 | 71.429 | 56 | 16 | 0 | 65 | 120 | 40 | 95 | 1.98e-21 | 85.1 |
| MS.gene04209.t1 | MTR_7g099500 | 57.576 | 66 | 28 | 0 | 55 | 120 | 7 | 72 | 2.43e-20 | 83.2 |
| MS.gene04209.t1 | MTR_8g063580 | 51.389 | 72 | 35 | 0 | 49 | 120 | 2 | 73 | 8.14e-18 | 77.0 |
| MS.gene04209.t1 | MTR_3g075390 | 66.667 | 57 | 15 | 2 | 117 | 169 | 225 | 281 | 6.68e-15 | 72.8 |
| MS.gene04209.t1 | MTR_4g104370 | 62.500 | 48 | 17 | 1 | 120 | 166 | 227 | 274 | 2.46e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04209.t1 | AT5G26594 | 55.556 | 63 | 28 | 0 | 58 | 120 | 17 | 79 | 6.51e-19 | 79.7 |
| MS.gene04209.t1 | AT5G50260 | 64.583 | 48 | 16 | 1 | 120 | 166 | 226 | 273 | 1.02e-11 | 63.5 |
Find 46 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAGAACCTGACCCTTTC+TGG | 0.129210 | 3.2:+50939303 | None:intergenic |
| GTTAGTAACCTGACCCTTTC+AGG | 0.202839 | 3.2:+50939255 | None:intergenic |
| AAGTTCCGTCGATCCCTTTA+AGG | 0.208502 | 3.2:+50941117 | None:intergenic |
| ACATCTATGGCCACGGAAAC+AGG | 0.266756 | 3.2:+50939573 | None:intergenic |
| GGCTGGATCCAACACCTTAA+AGG | 0.285594 | 3.2:-50941131 | MS.gene04209:CDS |
| ACACAGTAACATACCCTTTC+GGG | 0.341032 | 3.2:+50939336 | None:intergenic |
| CAGAATTCAGAAAGAGCTAA+TGG | 0.378222 | 3.2:-50940950 | MS.gene04209:CDS |
| CTAATGGAACCTCAAAATTC+AGG | 0.391284 | 3.2:-50940934 | MS.gene04209:CDS |
| ATCAGATCCTCCGACATCTA+TGG | 0.393380 | 3.2:+50939560 | None:intergenic |
| GCAGATGGCACAGACCTATC+AGG | 0.402031 | 3.2:-50941209 | None:intergenic |
| CGTCGATCCCTTTAAGGTGT+TGG | 0.413015 | 3.2:+50941123 | None:intergenic |
| CACACAGTAACATACCCTTT+CGG | 0.413551 | 3.2:+50939335 | None:intergenic |
| TGATTACCTCATAGTAGAAC+TGG | 0.423082 | 3.2:+50939535 | None:intergenic |
| GCTGGATCCAACACCTTAAA+GGG | 0.429902 | 3.2:-50941130 | MS.gene04209:CDS |
| TCTTTATACTCGAAAGGGTC+AGG | 0.435024 | 3.2:-50939287 | MS.gene04209:CDS |
| TGAATCTCATCCACCGCAAA+AGG | 0.440950 | 3.2:+50939363 | None:intergenic |
| TACTTCAACCTGAAAGGGTC+AGG | 0.451464 | 3.2:-50939263 | MS.gene04209:CDS |
| AAGGAAATGCCTGTCATGAA+TGG | 0.455995 | 3.2:-50940749 | MS.gene04209:CDS |
| GGCAATCAGTTGACACAGTT+GGG | 0.456150 | 3.2:+50939649 | None:intergenic |
| AATGCATCTTGATCGTTAGT+TGG | 0.482539 | 3.2:+50939615 | None:intergenic |
| GATCCAGCCTCTTCATCAAA+AGG | 0.496221 | 3.2:+50941145 | None:intergenic |
| TGATTTCCAGTTCTACTATG+AGG | 0.502533 | 3.2:-50939541 | MS.gene04209:intron |
| TGGCAATCAGTTGACACAGT+TGG | 0.506587 | 3.2:+50939648 | None:intergenic |
| CAGGTTCTTTATACTCGAAA+GGG | 0.508294 | 3.2:-50939292 | MS.gene04209:CDS |
| AGGAAATGCCTGTCATGAAT+GGG | 0.510485 | 3.2:-50940748 | MS.gene04209:CDS |
| TAGACACCAACATTTGATGA+TGG | 0.521160 | 3.2:-50941095 | MS.gene04209:intron |
| TCAGGTTCTTTATACTCGAA+AGG | 0.530199 | 3.2:-50939293 | MS.gene04209:CDS |
| TCAGGTTACTTCAACCTGAA+AGG | 0.531659 | 3.2:-50939269 | MS.gene04209:CDS |
| CAGGTTACTTCAACCTGAAA+GGG | 0.532168 | 3.2:-50939268 | MS.gene04209:CDS |
| ATCAAAAGATACATCCTGAT+AGG | 0.534940 | 3.2:+50941195 | None:intergenic |
| CGAGGTCTATTGAAAAGAGC+TGG | 0.553107 | 3.2:-50940857 | MS.gene04209:CDS |
| ACCTCAATCCCATTCATGAC+AGG | 0.555433 | 3.2:+50940740 | None:intergenic |
| TCCTCCGACATCTATGGCCA+CGG | 0.572609 | 3.2:+50939566 | None:intergenic |
| CATCCACCGCAAAAGGTCAC+CGG | 0.580322 | 3.2:+50939370 | None:intergenic |
| GCCTGTCATGAATGGGATTG+AGG | 0.582215 | 3.2:-50940741 | MS.gene04209:intron |
| CATCTATGGCCACGGAAACA+GGG | 0.591268 | 3.2:+50939574 | None:intergenic |
| GTTTCCGTGGCCATAGATGT+CGG | 0.596014 | 3.2:-50939570 | MS.gene04209:CDS |
| CGTTAGTTGGAACAATCTCA+TGG | 0.602898 | 3.2:+50939628 | None:intergenic |
| CACCGACCATCATCAAATGT+TGG | 0.604150 | 3.2:+50941089 | None:intergenic |
| AGCTTATCATCATCTACAGT+AGG | 0.611286 | 3.2:+50940896 | None:intergenic |
| TATGGCCACGGAAACAGGGT+TGG | 0.614484 | 3.2:+50939578 | None:intergenic |
| TGTTGCCAACCCTGTTTCCG+TGG | 0.633805 | 3.2:-50939583 | MS.gene04209:CDS |
| CAACACCTTAAAGGGATCGA+CGG | 0.635156 | 3.2:-50941122 | MS.gene04209:CDS |
| GCTGTAGATATTCATTGCAG+TGG | 0.642650 | 3.2:-50940800 | MS.gene04209:CDS |
| CTTGTTCAAATGATTCATCG+AGG | 0.704104 | 3.2:-50940875 | MS.gene04209:CDS |
| TCCGTGGCCATAGATGTCGG+AGG | 0.709262 | 3.2:-50939567 | MS.gene04209:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTGATATTATTTTCA+TGG | - | chr3.2:50939687-50939706 | MS.gene04209:intron | 15.0% |
| !!! | TAATTTTGTTCTGTATAATA+TGG | - | chr3.2:50939818-50939837 | MS.gene04209:intron | 15.0% |
| !!! | TAATTTTGTTTGATCAAAAT+TGG | + | chr3.2:50940341-50940360 | None:intergenic | 15.0% |
| !! | TGCTCAATTCTATTTATTTA+AGG | + | chr3.2:50940021-50940040 | None:intergenic | 20.0% |
| !! | TTATACAGAACAAAATTAAC+AGG | + | chr3.2:50939816-50939835 | None:intergenic | 20.0% |
| ! | AAAAGTGAAGCTGTAAAAAA+TGG | - | chr3.2:50939631-50939650 | MS.gene04209:CDS | 25.0% |
| ! | ACAAACAAAAACAACAATGT+CGG | + | chr3.2:50941049-50941068 | None:intergenic | 25.0% |
| ! | GAACAAAATTAACAGGAAAA+AGG | + | chr3.2:50939809-50939828 | None:intergenic | 25.0% |
| ! | TAGACATTTATCGACAATTA+TGG | - | chr3.2:50939927-50939946 | MS.gene04209:intron | 25.0% |
| ! | TATGACAATCAAGAAAATCA+AGG | - | chr3.2:50940563-50940582 | MS.gene04209:intron | 25.0% |
| ! | TTGATTGTCATAATCTACAA+GGG | + | chr3.2:50940555-50940574 | None:intergenic | 25.0% |
| !! | TGATATTATTTTCATGGACA+AGG | - | chr3.2:50939693-50939712 | MS.gene04209:intron | 25.0% |
| !!! | ATTGTTGTTTTTGTTTGTTC+AGG | - | chr3.2:50941051-50941070 | MS.gene04209:intron | 25.0% |
| !!! | TTGTTGTTTTTGTTTGTTCA+GGG | - | chr3.2:50941052-50941071 | MS.gene04209:intron | 25.0% |
| ATCAAAAGATACATCCTGAT+AGG | + | chr3.2:50939269-50939288 | None:intergenic | 30.0% | |
| CTTGATTGTCATAATCTACA+AGG | + | chr3.2:50940556-50940575 | None:intergenic | 30.0% | |
| GAAAACTATGCTCCTTAAAA+AGG | - | chr3.2:50940482-50940501 | MS.gene04209:intron | 30.0% | |
| GAGTACATAAAGCAAAAAGA+TGG | - | chr3.2:50940617-50940636 | MS.gene04209:intron | 30.0% | |
| GTCGATAAATGTCTAAATCT+GGG | + | chr3.2:50939922-50939941 | None:intergenic | 30.0% | |
| TCGATAAATGTCTAAATCTG+GGG | + | chr3.2:50939921-50939940 | None:intergenic | 30.0% | |
| TGTCGATAAATGTCTAAATC+TGG | + | chr3.2:50939923-50939942 | None:intergenic | 30.0% | |
| TGTGTCTTAAAAACCAGAAA+GGG | - | chr3.2:50941145-50941164 | MS.gene04209:CDS | 30.0% | |
| ! | AAGATTTCCTCTCCTTTTTA+AGG | + | chr3.2:50940497-50940516 | None:intergenic | 30.0% |
| ! | AAGTTTTCATAACCTGACTT+AGG | - | chr3.2:50940231-50940250 | MS.gene04209:intron | 30.0% |
| ! | ACTAGTTTATACTACCTGAA+AGG | + | chr3.2:50940302-50940321 | None:intergenic | 30.0% |
| !! | TTTTTGTTTGTTCAGGGATT+GGG | - | chr3.2:50941058-50941077 | MS.gene04209:intron | 30.0% |
| !!! | GATTTTAGTCTTGTTATTGC+CGG | + | chr3.2:50940176-50940195 | None:intergenic | 30.0% |
| !!! | TTTTGATCAGTCGTTTTTCA+GGG | - | chr3.2:50939282-50939301 | MS.gene04209:CDS | 30.0% |
| AAAATCAAGGATGCAATGGT+GGG | - | chr3.2:50940576-50940595 | MS.gene04209:intron | 35.0% | |
| AATGCATCTTGATCGTTAGT+TGG | + | chr3.2:50940849-50940868 | None:intergenic | 35.0% | |
| AGCAATGATACAAGACTTTC+CGG | - | chr3.2:50940154-50940173 | MS.gene04209:intron | 35.0% | |
| AGCTTATCATCATCTACAGT+AGG | + | chr3.2:50939568-50939587 | None:intergenic | 35.0% | |
| ATCCATCATTTGCAGTGTAA+GGG | + | chr3.2:50940664-50940683 | None:intergenic | 35.0% | |
| ATGAGATTCAAAAACCCGAA+AGG | - | chr3.2:50941111-50941130 | MS.gene04209:CDS | 35.0% | |
| CAAGAAAATCAAGGATGCAA+TGG | - | chr3.2:50940572-50940591 | MS.gene04209:intron | 35.0% | |
| CAGAATTCAGAAAGAGCTAA+TGG | - | chr3.2:50939511-50939530 | MS.gene04209:intron | 35.0% | |
| CAGGTTCTTTATACTCGAAA+GGG | - | chr3.2:50941169-50941188 | MS.gene04209:CDS | 35.0% | |
| CTAATGGAACCTCAAAATTC+AGG | - | chr3.2:50939527-50939546 | MS.gene04209:intron | 35.0% | |
| CTTGTTCAAATGATTCATCG+AGG | - | chr3.2:50939586-50939605 | MS.gene04209:CDS | 35.0% | |
| GTGTGTCTTAAAAACCAGAA+AGG | - | chr3.2:50941144-50941163 | MS.gene04209:CDS | 35.0% | |
| TAGACACCAACATTTGATGA+TGG | - | chr3.2:50939366-50939385 | MS.gene04209:CDS | 35.0% | |
| TCAGGTTCTTTATACTCGAA+AGG | - | chr3.2:50941168-50941187 | MS.gene04209:CDS | 35.0% | |
| TCGACAAGCATAGATTTGAA+TGG | - | chr3.2:50939893-50939912 | MS.gene04209:intron | 35.0% | |
| TCTGTATAATATGGAAGACC+TGG | - | chr3.2:50939827-50939846 | MS.gene04209:intron | 35.0% | |
| TGAAGCTGTAAAAAATGGCA+AGG | - | chr3.2:50939636-50939655 | MS.gene04209:CDS | 35.0% | |
| TGAGATTCAAAAACCCGAAA+GGG | - | chr3.2:50941112-50941131 | MS.gene04209:CDS | 35.0% | |
| TGATTACCTCATAGTAGAAC+TGG | + | chr3.2:50940929-50940948 | None:intergenic | 35.0% | |
| TGATTTCCAGTTCTACTATG+AGG | - | chr3.2:50940920-50940939 | MS.gene04209:CDS | 35.0% | |
| ! | TAATTCGTGCCTGAATTTTG+AGG | + | chr3.2:50939539-50939558 | None:intergenic | 35.0% |
| ! | TGACAACAGTTTAGAATCCA+TGG | + | chr3.2:50940726-50940745 | None:intergenic | 35.0% |
| !! | AAGAGAAATCCAGTGGATTT+TGG | + | chr3.2:50940446-50940465 | None:intergenic | 35.0% |
| !! | CTTGTCGATACTTTAAAGCA+GGG | + | chr3.2:50939881-50939900 | None:intergenic | 35.0% |
| !! | GTTTTTGTTTGTTCAGGGAT+TGG | - | chr3.2:50941057-50941076 | MS.gene04209:intron | 35.0% |
| !! | TTTGTTGTTACTTGCTTTGC+AGG | + | chr3.2:50939957-50939976 | None:intergenic | 35.0% |
| !!! | CTTTTGATCAGTCGTTTTTC+AGG | - | chr3.2:50939281-50939300 | MS.gene04209:CDS | 35.0% |
| AAAGGATGCTACACTCACAA+AGG | + | chr3.2:50940284-50940303 | None:intergenic | 40.0% | |
| AAGGAAATGCCTGTCATGAA+TGG | - | chr3.2:50939712-50939731 | MS.gene04209:intron | 40.0% | |
| ACAAAACTCATTCACGATGC+AGG | - | chr3.2:50940782-50940801 | MS.gene04209:CDS | 40.0% | |
| ACACAGTAACATACCCTTTC+GGG | + | chr3.2:50941128-50941147 | None:intergenic | 40.0% | |
| AGGAAATGCCTGTCATGAAT+GGG | - | chr3.2:50939713-50939732 | MS.gene04209:intron | 40.0% | |
| ATAAAGAACCTGACCCTTTC+TGG | + | chr3.2:50941161-50941180 | None:intergenic | 40.0% | |
| CACACAGTAACATACCCTTT+CGG | + | chr3.2:50941129-50941148 | None:intergenic | 40.0% | |
| CAGGTTACTTCAACCTGAAA+GGG | - | chr3.2:50941193-50941212 | MS.gene04209:CDS | 40.0% | |
| CGTTAGTTGGAACAATCTCA+TGG | + | chr3.2:50940836-50940855 | None:intergenic | 40.0% | |
| CTATGCTCCTTAAAAAGGAG+AGG | - | chr3.2:50940487-50940506 | MS.gene04209:intron | 40.0% | |
| CTTAAAAACCAGAAAGGGTC+AGG | - | chr3.2:50941150-50941169 | MS.gene04209:CDS | 40.0% | |
| GAAAATCAAGGATGCAATGG+TGG | - | chr3.2:50940575-50940594 | MS.gene04209:intron | 40.0% | |
| GATCCATCATTTGCAGTGTA+AGG | + | chr3.2:50940665-50940684 | None:intergenic | 40.0% | |
| GCTGTAGATATTCATTGCAG+TGG | - | chr3.2:50939661-50939680 | MS.gene04209:intron | 40.0% | |
| GGTGTGAGTATAAGAAGAGT+AGG | - | chr3.2:50940062-50940081 | MS.gene04209:intron | 40.0% | |
| TAATATGGAAGACCTGGTTC+AGG | - | chr3.2:50939833-50939852 | MS.gene04209:intron | 40.0% | |
| TACCCTTACACTGCAAATGA+TGG | - | chr3.2:50940659-50940678 | MS.gene04209:intron | 40.0% | |
| TAGAATCCATGGTATCACCT+TGG | + | chr3.2:50940715-50940734 | None:intergenic | 40.0% | |
| TCAGGTTACTTCAACCTGAA+AGG | - | chr3.2:50941192-50941211 | MS.gene04209:CDS | 40.0% | |
| TCTAGCAAAGAGAAATCCAG+TGG | + | chr3.2:50940453-50940472 | None:intergenic | 40.0% | |
| TCTTTATACTCGAAAGGGTC+AGG | - | chr3.2:50941174-50941193 | MS.gene04209:CDS | 40.0% | |
| TGTATCATTGCTGACAAGAG+CGG | + | chr3.2:50940146-50940165 | None:intergenic | 40.0% | |
| TTAATAGCTACACCTGAACC+AGG | + | chr3.2:50939848-50939867 | None:intergenic | 40.0% | |
| TTATAATCCCAATGACGCAG+TGG | + | chr3.2:50939489-50939508 | None:intergenic | 40.0% | |
| ! | GCAACTTCCTTTTGATGAAG+AGG | - | chr3.2:50939309-50939328 | MS.gene04209:CDS | 40.0% |
| ! | TGTCTGAGACGTTGAATGAT+TGG | - | chr3.2:50940092-50940111 | MS.gene04209:intron | 40.0% |
| !! | ACCTTGGATGGGTTAAAATC+CGG | + | chr3.2:50940699-50940718 | None:intergenic | 40.0% |
| !! | CACCAACATTTGATGATGGT+CGG | - | chr3.2:50939370-50939389 | MS.gene04209:CDS | 40.0% |
| !! | GCTTGTCGATACTTTAAAGC+AGG | + | chr3.2:50939882-50939901 | None:intergenic | 40.0% |
| AAGTTCCGTCGATCCCTTTA+AGG | + | chr3.2:50939347-50939366 | None:intergenic | 45.0% | |
| ACCTCAATCCCATTCATGAC+AGG | + | chr3.2:50939724-50939743 | None:intergenic | 45.0% | |
| ATCAGATCCTCCGACATCTA+TGG | + | chr3.2:50940904-50940923 | None:intergenic | 45.0% | |
| ATCCATGGTATCACCTTGGA+TGG | + | chr3.2:50940711-50940730 | None:intergenic | 45.0% | |
| ATGAGATGCTAACTCTGCTG+TGG | - | chr3.2:50940040-50940059 | MS.gene04209:intron | 45.0% | |
| CAAAACGTAATGTCCCAGCA+AGG | + | chr3.2:50939405-50939424 | None:intergenic | 45.0% | |
| CAACACCTTAAAGGGATCGA+CGG | - | chr3.2:50939339-50939358 | MS.gene04209:CDS | 45.0% | |
| CACCGACCATCATCAAATGT+TGG | + | chr3.2:50939375-50939394 | None:intergenic | 45.0% | |
| CCAGTTGTGTTTCGTTTCGT+CGG | - | chr3.2:50940979-50940998 | MS.gene04209:intron | 45.0% | |
| CCTTGAACACCAAAATCCAC+TGG | - | chr3.2:50940434-50940453 | MS.gene04209:intron | 45.0% | |
| CGAGGTCTATTGAAAAGAGC+TGG | - | chr3.2:50939604-50939623 | MS.gene04209:CDS | 45.0% | |
| GATAACTCGATGCCTAAGTC+AGG | + | chr3.2:50940246-50940265 | None:intergenic | 45.0% | |
| GATCCAGCCTCTTCATCAAA+AGG | + | chr3.2:50939319-50939338 | None:intergenic | 45.0% | |
| GATGGATCTTGTGATGCATC+CGG | - | chr3.2:50940677-50940696 | MS.gene04209:intron | 45.0% | |
| GCTGGATCCAACACCTTAAA+GGG | - | chr3.2:50939331-50939350 | MS.gene04209:CDS | 45.0% | |
| GGCAATCAGTTGACACAGTT+GGG | + | chr3.2:50940815-50940834 | None:intergenic | 45.0% | |
| TACTTCAACCTGAAAGGGTC+AGG | - | chr3.2:50941198-50941217 | MS.gene04209:CDS | 45.0% | |
| TCCATGGTATCACCTTGGAT+GGG | + | chr3.2:50940710-50940729 | None:intergenic | 45.0% | |
| TGAATCTCATCCACCGCAAA+AGG | + | chr3.2:50941101-50941120 | None:intergenic | 45.0% | |
| TGAGATGCTAACTCTGCTGT+GGG | - | chr3.2:50940041-50940060 | MS.gene04209:intron | 45.0% | |
| TGGCAATCAGTTGACACAGT+TGG | + | chr3.2:50940816-50940835 | None:intergenic | 45.0% | |
| TGTGAGTGTAGCATCCTTTC+AGG | - | chr3.2:50940285-50940304 | MS.gene04209:intron | 45.0% | |
| TTGTTTGTTCAGGGATTGGG+TGG | - | chr3.2:50941061-50941080 | MS.gene04209:intron | 45.0% | |
| ! | CTTCCTTTTGATGAAGAGGC+TGG | - | chr3.2:50939313-50939332 | MS.gene04209:CDS | 45.0% |
| ! | TCGGTGTTTATCACCTTGCT+GGG | - | chr3.2:50939389-50939408 | MS.gene04209:intron | 45.0% |
| ! | TTTAGACCGGTGACCTTTTG+CGG | - | chr3.2:50941085-50941104 | MS.gene04209:intron | 45.0% |
| !! | TCCGGATTTTAACCCATCCA+AGG | - | chr3.2:50940695-50940714 | MS.gene04209:intron | 45.0% |
| !!! | CCAGTGGATTTTGGTGTTCA+AGG | + | chr3.2:50940437-50940456 | None:intergenic | 45.0% |
| ACATCTATGGCCACGGAAAC+AGG | + | chr3.2:50940891-50940910 | None:intergenic | 50.0% | |
| ACCCATCCAAGGTGATACCA+TGG | - | chr3.2:50940706-50940725 | MS.gene04209:intron | 50.0% | |
| AGTGTGATCCACTGCGTCAT+TGG | - | chr3.2:50939478-50939497 | MS.gene04209:intron | 50.0% | |
| CATCTATGGCCACGGAAACA+GGG | + | chr3.2:50940890-50940909 | None:intergenic | 50.0% | |
| CCGACGAAACGAAACACAAC+TGG | + | chr3.2:50940982-50941001 | None:intergenic | 50.0% | |
| CTGCAAAAACAAAAGCCCGC+CGG | + | chr3.2:50941022-50941041 | None:intergenic | 50.0% | |
| GCCTGTCATGAATGGGATTG+AGG | - | chr3.2:50939720-50939739 | MS.gene04209:intron | 50.0% | |
| GGCTGGATCCAACACCTTAA+AGG | - | chr3.2:50939330-50939349 | MS.gene04209:CDS | 50.0% | |
| GTGTGATCCACTGCGTCATT+GGG | - | chr3.2:50939479-50939498 | MS.gene04209:intron | 50.0% | |
| GTTTCCGTGGCCATAGATGT+CGG | - | chr3.2:50940891-50940910 | MS.gene04209:CDS | 50.0% | |
| ! | GGGATTGGGTGGATTTAGAC+CGG | - | chr3.2:50941072-50941091 | MS.gene04209:intron | 50.0% |
| ! | GTCGGTGTTTATCACCTTGC+TGG | - | chr3.2:50939388-50939407 | MS.gene04209:intron | 50.0% |
| !! | AGGATGCAATGGTGGGCTAA+TGG | - | chr3.2:50940583-50940602 | MS.gene04209:intron | 50.0% |
| !! | CGATACTTTAAAGCAGGGCG+TGG | + | chr3.2:50939876-50939895 | None:intergenic | 50.0% |
| !! | CGTCGATCCCTTTAAGGTGT+TGG | + | chr3.2:50939341-50939360 | None:intergenic | 50.0% |
| CATCCACCGCAAAAGGTCAC+CGG | + | chr3.2:50941094-50941113 | None:intergenic | 55.0% | |
| TATGGCCACGGAAACAGGGT+TGG | + | chr3.2:50940886-50940905 | None:intergenic | 55.0% | |
| TCCTCCGACATCTATGGCCA+CGG | + | chr3.2:50940898-50940917 | None:intergenic | 55.0% | |
| TGTTGCCAACCCTGTTTCCG+TGG | - | chr3.2:50940878-50940897 | MS.gene04209:CDS | 55.0% | |
| !!! | CGGCGGGCTTTTGTTTTTGC+AGG | - | chr3.2:50941020-50941039 | MS.gene04209:intron | 55.0% |
| TCCGTGGCCATAGATGTCGG+AGG | - | chr3.2:50940894-50940913 | MS.gene04209:CDS | 60.0% | |
| ! | AGACCGGTGACCTTTTGCGG+TGG | - | chr3.2:50941088-50941107 | MS.gene04209:intron | 60.0% |
| ! | GGTTGCCGTCTGTTTGCTGC+CGG | - | chr3.2:50941000-50941019 | MS.gene04209:intron | 60.0% |
| ! | TGCCGTCTGTTTGCTGCCGG+CGG | - | chr3.2:50941003-50941022 | MS.gene04209:intron | 65.0% |
| GCCCGCCGGCAGCAAACAGA+CGG | + | chr3.2:50941008-50941027 | None:intergenic | 70.0% | |
| ! | GCCGTCTGTTTGCTGCCGGC+GGG | - | chr3.2:50941004-50941023 | MS.gene04209:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 50939256 | 50941227 | 50939256 | ID=MS.gene04209 |
| chr3.2 | mRNA | 50939256 | 50941227 | 50939256 | ID=MS.gene04209.t1;Parent=MS.gene04209 |
| chr3.2 | exon | 50941096 | 50941227 | 50941096 | ID=MS.gene04209.t1.exon1;Parent=MS.gene04209.t1 |
| chr3.2 | CDS | 50941096 | 50941227 | 50941096 | ID=cds.MS.gene04209.t1;Parent=MS.gene04209.t1 |
| chr3.2 | exon | 50940742 | 50940969 | 50940742 | ID=MS.gene04209.t1.exon2;Parent=MS.gene04209.t1 |
| chr3.2 | CDS | 50940742 | 50940969 | 50940742 | ID=cds.MS.gene04209.t1;Parent=MS.gene04209.t1 |
| chr3.2 | exon | 50939542 | 50939679 | 50939542 | ID=MS.gene04209.t1.exon3;Parent=MS.gene04209.t1 |
| chr3.2 | CDS | 50939542 | 50939679 | 50939542 | ID=cds.MS.gene04209.t1;Parent=MS.gene04209.t1 |
| chr3.2 | exon | 50939256 | 50939393 | 50939256 | ID=MS.gene04209.t1.exon4;Parent=MS.gene04209.t1 |
| chr3.2 | CDS | 50939256 | 50939393 | 50939256 | ID=cds.MS.gene04209.t1;Parent=MS.gene04209.t1 |
| Gene Sequence |
| Protein sequence |
