Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042294.t1 | XP_003609751.2 | 98.3 | 923 | 16 | 0 | 1 | 923 | 1 | 923 | 0.00E+00 | 1756.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042294.t1 | O23463 | 56.5 | 929 | 383 | 10 | 3 | 917 | 1 | 922 | 5.0e-277 | 955.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042294.t1 | G7JMT3 | 98.3 | 923 | 16 | 0 | 1 | 923 | 1 | 923 | 0.0e+00 | 1756.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene042294.t1 | TF | CAMTA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042294.t1 | MTR_4g121840 | 98.375 | 923 | 15 | 0 | 1 | 923 | 1 | 923 | 0.0 | 1902 |
| MS.gene042294.t1 | MTR_4g121840 | 97.245 | 871 | 24 | 0 | 53 | 923 | 23 | 893 | 0.0 | 1766 |
| MS.gene042294.t1 | MTR_2g034650 | 71.196 | 920 | 252 | 3 | 2 | 920 | 1 | 908 | 0.0 | 1362 |
| MS.gene042294.t1 | MTR_2g008840 | 31.176 | 1020 | 556 | 25 | 25 | 917 | 13 | 1013 | 5.88e-132 | 422 |
| MS.gene042294.t1 | MTR_2g008840 | 30.777 | 991 | 540 | 25 | 54 | 917 | 2 | 973 | 1.25e-122 | 397 |
| MS.gene042294.t1 | MTR_2g008840 | 30.676 | 903 | 482 | 24 | 25 | 802 | 13 | 896 | 1.51e-103 | 343 |
| MS.gene042294.t1 | MTR_8g090205 | 32.857 | 630 | 388 | 13 | 310 | 910 | 275 | 898 | 3.38e-92 | 313 |
| MS.gene042294.t1 | MTR_8g090205 | 33.170 | 612 | 379 | 12 | 310 | 897 | 275 | 880 | 1.46e-91 | 310 |
| MS.gene042294.t1 | MTR_8g090205 | 32.857 | 630 | 388 | 13 | 310 | 910 | 432 | 1055 | 4.24e-91 | 313 |
| MS.gene042294.t1 | MTR_8g090205 | 55.725 | 131 | 58 | 0 | 25 | 155 | 9 | 139 | 4.15e-41 | 164 |
| MS.gene042294.t1 | MTR_8g090205 | 32.857 | 630 | 388 | 13 | 310 | 910 | 434 | 1057 | 5.11e-91 | 312 |
| MS.gene042294.t1 | MTR_8g090205 | 56.154 | 130 | 57 | 0 | 26 | 155 | 12 | 141 | 4.38e-41 | 164 |
| MS.gene042294.t1 | MTR_8g090205 | 33.170 | 612 | 379 | 12 | 310 | 897 | 432 | 1037 | 2.24e-90 | 310 |
| MS.gene042294.t1 | MTR_8g090205 | 55.725 | 131 | 58 | 0 | 25 | 155 | 9 | 139 | 4.74e-41 | 164 |
| MS.gene042294.t1 | MTR_8g090205 | 33.170 | 612 | 379 | 12 | 310 | 897 | 434 | 1039 | 2.89e-90 | 310 |
| MS.gene042294.t1 | MTR_8g090205 | 56.154 | 130 | 57 | 0 | 26 | 155 | 12 | 141 | 5.47e-41 | 164 |
| MS.gene042294.t1 | MTR_8g080800 | 35.126 | 595 | 323 | 19 | 338 | 907 | 380 | 936 | 2.15e-84 | 292 |
| MS.gene042294.t1 | MTR_8g080800 | 48.276 | 145 | 73 | 1 | 24 | 166 | 6 | 150 | 6.05e-39 | 157 |
| MS.gene042294.t1 | MTR_4g094215 | 32.039 | 618 | 362 | 15 | 316 | 897 | 386 | 981 | 2.76e-79 | 278 |
| MS.gene042294.t1 | MTR_4g094215 | 54.032 | 124 | 57 | 0 | 25 | 148 | 13 | 136 | 9.59e-37 | 150 |
| MS.gene042294.t1 | MTR_4g094215 | 32.039 | 618 | 362 | 15 | 316 | 897 | 386 | 981 | 2.79e-79 | 278 |
| MS.gene042294.t1 | MTR_4g094215 | 54.032 | 124 | 57 | 0 | 25 | 148 | 13 | 136 | 9.28e-37 | 150 |
| MS.gene042294.t1 | MTR_3g085050 | 33.167 | 603 | 338 | 17 | 347 | 919 | 368 | 935 | 6.36e-78 | 273 |
| MS.gene042294.t1 | MTR_3g085050 | 52.419 | 124 | 59 | 0 | 26 | 149 | 8 | 131 | 8.55e-38 | 153 |
| MS.gene042294.t1 | MTR_3g085050 | 33.333 | 576 | 324 | 16 | 347 | 897 | 368 | 908 | 1.89e-77 | 271 |
| MS.gene042294.t1 | MTR_3g085050 | 52.419 | 124 | 59 | 0 | 26 | 149 | 8 | 131 | 7.25e-38 | 153 |
| MS.gene042294.t1 | MTR_8g090205 | 31.128 | 514 | 327 | 11 | 310 | 802 | 434 | 941 | 1.72e-63 | 232 |
| MS.gene042294.t1 | MTR_8g090205 | 56.154 | 130 | 57 | 0 | 26 | 155 | 12 | 141 | 4.16e-41 | 164 |
| MS.gene042294.t1 | MTR_4g094215 | 30.843 | 522 | 306 | 14 | 314 | 802 | 384 | 883 | 1.34e-53 | 202 |
| MS.gene042294.t1 | MTR_4g094215 | 54.032 | 124 | 57 | 0 | 25 | 148 | 13 | 136 | 8.02e-37 | 150 |
| MS.gene042294.t1 | MTR_8g090200 | 31.522 | 92 | 63 | 0 | 367 | 458 | 312 | 403 | 7.23e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042294.t1 | AT3G16940 | 55.827 | 901 | 327 | 8 | 9 | 907 | 7 | 838 | 0.0 | 983 |
| MS.gene042294.t1 | AT3G16940 | 55.227 | 880 | 323 | 8 | 30 | 907 | 1 | 811 | 0.0 | 944 |
| MS.gene042294.t1 | AT3G16940 | 54.523 | 796 | 296 | 7 | 9 | 802 | 7 | 738 | 0.0 | 841 |
| MS.gene042294.t1 | AT5G09410 | 31.038 | 944 | 559 | 16 | 25 | 897 | 16 | 938 | 1.68e-130 | 417 |
| MS.gene042294.t1 | AT5G09410 | 30.155 | 965 | 558 | 17 | 25 | 897 | 75 | 1015 | 2.01e-121 | 395 |
| MS.gene042294.t1 | AT2G22300 | 35.072 | 556 | 336 | 9 | 367 | 916 | 402 | 938 | 1.53e-89 | 306 |
| MS.gene042294.t1 | AT2G22300 | 69.231 | 78 | 24 | 0 | 71 | 148 | 1 | 78 | 7.47e-29 | 125 |
| MS.gene042294.t1 | AT2G22300 | 35.072 | 556 | 336 | 9 | 367 | 916 | 460 | 996 | 4.48e-89 | 306 |
| MS.gene042294.t1 | AT2G22300 | 57.778 | 135 | 57 | 0 | 14 | 148 | 2 | 136 | 1.60e-44 | 175 |
| MS.gene042294.t1 | AT2G22300 | 35.072 | 556 | 336 | 9 | 367 | 916 | 460 | 996 | 4.48e-89 | 306 |
| MS.gene042294.t1 | AT2G22300 | 57.778 | 135 | 57 | 0 | 14 | 148 | 2 | 136 | 1.60e-44 | 175 |
| MS.gene042294.t1 | AT5G09410 | 30.556 | 612 | 388 | 9 | 314 | 897 | 233 | 835 | 2.88e-80 | 279 |
| MS.gene042294.t1 | AT5G64220 | 31.046 | 612 | 378 | 11 | 314 | 897 | 403 | 998 | 1.09e-79 | 280 |
| MS.gene042294.t1 | AT5G64220 | 48.370 | 184 | 77 | 2 | 25 | 193 | 13 | 193 | 2.51e-44 | 174 |
| MS.gene042294.t1 | AT5G64220 | 31.046 | 612 | 378 | 11 | 314 | 897 | 403 | 998 | 1.09e-79 | 280 |
| MS.gene042294.t1 | AT5G64220 | 48.370 | 184 | 77 | 2 | 25 | 193 | 13 | 193 | 2.51e-44 | 174 |
| MS.gene042294.t1 | AT5G09410 | 30.556 | 612 | 388 | 9 | 314 | 897 | 354 | 956 | 1.74e-79 | 279 |
| MS.gene042294.t1 | AT5G09410 | 50.000 | 168 | 73 | 2 | 25 | 181 | 16 | 183 | 2.13e-40 | 162 |
| MS.gene042294.t1 | AT1G67310 | 33.059 | 608 | 345 | 16 | 350 | 919 | 415 | 998 | 1.89e-71 | 256 |
| MS.gene042294.t1 | AT1G67310 | 47.287 | 129 | 68 | 0 | 21 | 149 | 32 | 160 | 3.50e-36 | 148 |
Find 215 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCTCTGTTTGTAACTTTA+AGG | -0.008543 | 8.3:+7204242 | None:intergenic |
| TAACATCTACGAACAAAATT+TGG | 0.072421 | 8.3:+7211347 | None:intergenic |
| CATCCATTTGTGTGCAATTT+TGG | 0.104350 | 8.3:-7207563 | MS.gene042294:CDS |
| GTCATTGACCAAAGTGTTTA+AGG | 0.109944 | 8.3:+7208799 | None:intergenic |
| GGAAATAAATGATGTCTTTA+AGG | 0.133359 | 8.3:+7207756 | None:intergenic |
| CTAGATTTCCGGGATAAATT+TGG | 0.178425 | 8.3:-7207496 | MS.gene042294:CDS |
| TTACTACCTTTGCTTGATTA+AGG | 0.188541 | 8.3:+7203577 | None:intergenic |
| CAGGCTTATCGCTAGATTTC+CGG | 0.196850 | 8.3:-7207507 | MS.gene042294:CDS |
| ATACAATGCAGGCTGCTTTC+AGG | 0.201311 | 8.3:-7203881 | MS.gene042294:intron |
| GCATCTTTAGCTTGCGAAAA+TGG | 0.246405 | 8.3:+7207688 | None:intergenic |
| GTAAGGTTCTCGGAATTTAC+TGG | 0.269930 | 8.3:+7204357 | None:intergenic |
| CTTGAATCTTGATAGCTTGA+TGG | 0.274270 | 8.3:+7204055 | None:intergenic |
| TTGTGTCTTCAGGGAGAAAA+TGG | 0.285192 | 8.3:-7204592 | MS.gene042294:intron |
| GCATGATCCAGTAGCTTCTA+TGG | 0.288531 | 8.3:-7207911 | MS.gene042294:CDS |
| AATCTCTACTTGAGCTTTGA+TGG | 0.290115 | 8.3:-7207985 | MS.gene042294:CDS |
| AGGATGGGGTCTACCGTTGC+TGG | 0.297900 | 8.3:-7208035 | MS.gene042294:CDS |
| TGTAGTAGAGTTTGAATTTA+CGG | 0.298703 | 8.3:+7209904 | None:intergenic |
| GCTCGTGAAGCCTCAGTTCA+TGG | 0.300887 | 8.3:+7209349 | None:intergenic |
| TCAGTTGATGATTCTGCTCT+TGG | 0.301849 | 8.3:-7208713 | MS.gene042294:CDS |
| GTAAGATTAAATACTTGTTC+TGG | 0.324933 | 8.3:+7208623 | None:intergenic |
| CACACATTAGATTGGACTTT+GGG | 0.329782 | 8.3:+7208094 | None:intergenic |
| TACTACCTTTGCTTGATTAA+GGG | 0.341554 | 8.3:+7203578 | None:intergenic |
| TTTGAATTTACGGGAGTGAT+TGG | 0.343053 | 8.3:+7209914 | None:intergenic |
| AGAAAGCGCAAGAAGATTAT+AGG | 0.344611 | 8.3:-7203614 | MS.gene042294:CDS |
| GTTGCAACTTTGCTGTCAGC+TGG | 0.345081 | 8.3:-7204570 | MS.gene042294:CDS |
| ACTTCTCTCGACACGTTCTT+CGG | 0.345176 | 8.3:+7203668 | None:intergenic |
| CCTCGATGTTGCGAGCATTA+TGG | 0.346860 | 8.3:-7212127 | MS.gene042294:CDS |
| AAAGTAACAACTTGGCTGAT+AGG | 0.349913 | 8.3:+7207955 | None:intergenic |
| AAGGGGAATCAGACATGATT+TGG | 0.351252 | 8.3:+7208738 | None:intergenic |
| AACATCTACGAACAAAATTT+GGG | 0.354515 | 8.3:+7211348 | None:intergenic |
| CATCATTTATTTCCAATACT+TGG | 0.356488 | 8.3:-7207747 | MS.gene042294:CDS |
| CTGTCAGAAGAAATAGATTC+AGG | 0.364565 | 8.3:-7209854 | MS.gene042294:CDS |
| TTGGATGGACGGCTCTTCAT+TGG | 0.365957 | 8.3:-7207477 | MS.gene042294:CDS |
| CACAGACCTCTTGTGTTTCA+CGG | 0.368339 | 8.3:+7211161 | None:intergenic |
| CAAGCTAAAGATGCCCTGTT+TGG | 0.370069 | 8.3:-7207679 | MS.gene042294:CDS |
| AACAATATCGTAAAATCATT+TGG | 0.371099 | 8.3:-7203842 | MS.gene042294:CDS |
| CTTCATTGGGCAGCATATTA+CGG | 0.371986 | 8.3:-7207463 | MS.gene042294:CDS |
| CTGGGTACCACCGCATTCTC+CGG | 0.372817 | 8.3:-7208016 | MS.gene042294:CDS |
| GTAGTAGAGTTTGAATTTAC+GGG | 0.373399 | 8.3:+7209905 | None:intergenic |
| AGGCTTATCGCTAGATTTCC+GGG | 0.376462 | 8.3:-7207506 | MS.gene042294:CDS |
| GCTTAATACCGAGGAAGAAT+CGG | 0.378006 | 8.3:-7203751 | MS.gene042294:CDS |
| ATTCATTGGCTTGACATTGA+TGG | 0.378984 | 8.3:+7212035 | None:intergenic |
| GAACAAGGACGATGTGTTCC+AGG | 0.379575 | 8.3:+7211188 | None:intergenic |
| AACTTACCGGGTCAACTTGT+TGG | 0.380648 | 8.3:-7212704 | MS.gene042294:CDS |
| GATGATGGCAAATAACTTAC+CGG | 0.382750 | 8.3:-7212717 | MS.gene042294:CDS |
| TTAGAAAAGATGGGCACAAC+TGG | 0.386039 | 8.3:-7211591 | MS.gene042294:CDS |
| AATTTCTGCAGATGCATTGT+TGG | 0.386177 | 8.3:+7208970 | None:intergenic |
| TTCCTTTGTGCAGCTGGAAC+GGG | 0.387086 | 8.3:-7203474 | MS.gene042294:intron |
| CATTAAGTATTGCCAAGTAT+TGG | 0.389662 | 8.3:+7207735 | None:intergenic |
| ACGAGCTTAATACACTTGAA+TGG | 0.394137 | 8.3:-7209332 | MS.gene042294:CDS |
| GTTGGATCCGTGACCAAGTT+TGG | 0.394480 | 8.3:+7204540 | None:intergenic |
| AAGATACACTGGCAGCTTAC+CGG | 0.401008 | 8.3:-7204314 | MS.gene042294:CDS |
| CTGCTGCATCGGCAGCTGTC+CGG | 0.405371 | 8.3:+7204295 | None:intergenic |
| TGGCTTAGCAGCTTATCTTT+CGG | 0.408505 | 8.3:-7204460 | MS.gene042294:CDS |
| CTTCGGAACTTTAGAAAAGA+TGG | 0.410510 | 8.3:-7211601 | MS.gene042294:CDS |
| TATTGCTCACTGCAATTGGC+TGG | 0.411882 | 8.3:+7208927 | None:intergenic |
| TTCAATGACATGAGCTTAGC+TGG | 0.412581 | 8.3:-7204417 | MS.gene042294:CDS |
| TGTTCCTGCAGAAATTGTTC+AGG | 0.416056 | 8.3:-7208055 | MS.gene042294:CDS |
| TTGCAAAGTCAGGACAGCTT+TGG | 0.419514 | 8.3:-7208773 | MS.gene042294:CDS |
| TTCTCTTCCATAGAAGCTAC+TGG | 0.423128 | 8.3:+7207904 | None:intergenic |
| CTATGGAAGAGAAGAACAAC+TGG | 0.423755 | 8.3:-7207894 | MS.gene042294:CDS |
| ATTCCAAAATTGCACACAAA+TGG | 0.426542 | 8.3:+7207560 | None:intergenic |
| CGTAAAATCATTTGGTCAGT+TGG | 0.427825 | 8.3:-7203834 | MS.gene042294:CDS |
| CGAGCTTAATACACTTGAAT+GGG | 0.429815 | 8.3:-7209331 | MS.gene042294:CDS |
| AAGCATGGCATGAATCTCAT+TGG | 0.433333 | 8.3:+7212077 | None:intergenic |
| GGGACCAAAACTGCATATGC+TGG | 0.433437 | 8.3:-7209833 | MS.gene042294:CDS |
| GCTACTGGATCATGCAAAAC+AGG | 0.435079 | 8.3:+7207919 | None:intergenic |
| CGCTGATCTTGCTTATACGA+GGG | 0.436160 | 8.3:-7204490 | MS.gene042294:CDS |
| TCCACTACCAGAGATGAATA+TGG | 0.438348 | 8.3:+7208665 | None:intergenic |
| CAACTTGGCTGATAGGGTTA+TGG | 0.443521 | 8.3:+7207962 | None:intergenic |
| ACACACATTAGATTGGACTT+TGG | 0.444268 | 8.3:+7208093 | None:intergenic |
| TGGCTCATGATACAGTTTCA+GGG | 0.447890 | 8.3:-7209941 | MS.gene042294:intron |
| GCGTGCTTCAGCTTCTGGGC+TGG | 0.448475 | 8.3:+7204209 | None:intergenic |
| CTGCTCCTCGGTAAGGTTCT+CGG | 0.448811 | 8.3:+7204347 | None:intergenic |
| ATACTATTGCTCACTGCAAT+TGG | 0.451657 | 8.3:+7208923 | None:intergenic |
| GCGTTGGCGTTTAAAGAGAA+AGG | 0.452827 | 8.3:-7203790 | MS.gene042294:CDS |
| AAGTAACAACTTGGCTGATA+GGG | 0.459430 | 8.3:+7207956 | None:intergenic |
| TGTTTGACCGCAAGATGCTT+CGG | 0.463262 | 8.3:-7211618 | MS.gene042294:CDS |
| CTTGTTGGATCAGAGATACA+TGG | 0.467564 | 8.3:-7212689 | MS.gene042294:CDS |
| ACCACATACACACATTAGAT+TGG | 0.467840 | 8.3:+7208086 | None:intergenic |
| CTTAATACCGAGGAAGAATC+GGG | 0.468527 | 8.3:-7203750 | MS.gene042294:CDS |
| CTTCAGACAATTAGCAATCA+AGG | 0.472262 | 8.3:-7208872 | MS.gene042294:CDS |
| ATTAAATACTTGTTCTGGAA+GGG | 0.472785 | 8.3:+7208628 | None:intergenic |
| TTGCAACTTTGCTGTCAGCT+GGG | 0.472793 | 8.3:-7204569 | MS.gene042294:CDS |
| ATGCAGAGGAGGAATTCTTT+CGG | 0.473903 | 8.3:-7203707 | MS.gene042294:CDS |
| CTGCAGAAATTGTTCAGGAT+GGG | 0.477098 | 8.3:-7208050 | MS.gene042294:CDS |
| TGGATGGACGGCTCTTCATT+GGG | 0.477645 | 8.3:-7207476 | MS.gene042294:CDS |
| AGCTGGGGCAAAGCCAAACT+TGG | 0.480001 | 8.3:-7204553 | MS.gene042294:CDS |
| GACAGAATCCATGGTGCAGA+TGG | 0.481590 | 8.3:+7209872 | None:intergenic |
| TGGAAATATCAGTGGCTCAC+TGG | 0.481619 | 8.3:-7204397 | MS.gene042294:CDS |
| TAATGAACCATATTCATCTC+TGG | 0.490693 | 8.3:-7208672 | MS.gene042294:CDS |
| CTGATCTCCCGATTCTTCCT+CGG | 0.494626 | 8.3:+7203743 | None:intergenic |
| TACTGATGTGTCCCCTGCGT+GGG | 0.495048 | 8.3:-7208603 | MS.gene042294:CDS |
| GTCAGGACAGCTTTGGAATG+TGG | 0.495726 | 8.3:-7208766 | MS.gene042294:CDS |
| CACGCATACAAGAAGCATAT+AGG | 0.496664 | 8.3:-7204272 | MS.gene042294:CDS |
| TGGGTACCACCGCATTCTCC+GGG | 0.502761 | 8.3:-7208015 | MS.gene042294:CDS |
| ATTCCTTTGTGCAGCTGGAA+CGG | 0.503915 | 8.3:-7203475 | MS.gene042294:intron |
| TGTTGATTCCTTAAACACTT+TGG | 0.504390 | 8.3:-7208807 | MS.gene042294:CDS |
| AGAGGTTTATGCGATGATGA+TGG | 0.505647 | 8.3:-7212732 | None:intergenic |
| TACAACATAGATTCCGTACA+TGG | 0.506906 | 8.3:-7204107 | MS.gene042294:CDS |
| CTTTGTCTCAAAATTGCGGA+AGG | 0.510652 | 8.3:+7204155 | None:intergenic |
| CATAGAGCTGCTCCTCGGTA+AGG | 0.512844 | 8.3:+7204340 | None:intergenic |
| GCTTATACGAGGGGTTATCA+TGG | 0.514631 | 8.3:-7204480 | MS.gene042294:CDS |
| CTTCTTGCGCTTTCTTAGAA+CGG | 0.515603 | 8.3:+7203622 | None:intergenic |
| AGATGAATATGGTTCATTAA+CGG | 0.515829 | 8.3:+7208676 | None:intergenic |
| CCGGGATAAATTTGGATGGA+CGG | 0.516036 | 8.3:-7207488 | MS.gene042294:CDS |
| AGCATGGCATGAATCTCATT+GGG | 0.516702 | 8.3:+7212078 | None:intergenic |
| CAATGACAGATTGCAAAGTC+AGG | 0.517201 | 8.3:-7208783 | MS.gene042294:CDS |
| ACCATATTCATCTCTGGTAG+TGG | 0.517334 | 8.3:-7208666 | MS.gene042294:CDS |
| GATTAAATACTTGTTCTGGA+AGG | 0.517408 | 8.3:+7208627 | None:intergenic |
| CTTTCTTTGTCTCAAAATTG+CGG | 0.517560 | 8.3:+7204151 | None:intergenic |
| GAAAGGGCTTCCGTGGGCTC+CGG | 0.517612 | 8.3:-7203773 | MS.gene042294:CDS |
| ATCCAACTCACCAAAACCCT+GGG | 0.517945 | 8.3:-7204524 | MS.gene042294:CDS |
| ACGAGTTTCAACTTCAAATG+AGG | 0.518692 | 8.3:-7207870 | MS.gene042294:CDS |
| ATCAGGTTGGTAATGAAGAA+AGG | 0.520019 | 8.3:-7211403 | MS.gene042294:intron |
| GAGAAGTGTAATACGAGTGC+AGG | 0.521544 | 8.3:-7203652 | MS.gene042294:CDS |
| CCTGCAGAAATTGTTCAGGA+TGG | 0.524642 | 8.3:-7208051 | MS.gene042294:CDS |
| CATGGATTCCACACATTGCA+AGG | 0.525083 | 8.3:-7212671 | MS.gene042294:intron |
| TTGTATGCGTGCTGCTGCAT+CGG | 0.525543 | 8.3:+7204284 | None:intergenic |
| AGATTATAGGAGGATGAAGT+TGG | 0.526731 | 8.3:-7203601 | MS.gene042294:CDS |
| TGCAACTTTGCTGTCAGCTG+GGG | 0.527062 | 8.3:-7204568 | MS.gene042294:CDS |
| CGTTGGCGTTTAAAGAGAAA+GGG | 0.527109 | 8.3:-7203789 | MS.gene042294:CDS |
| TGCAGAAATTGTTCAGGATG+GGG | 0.527605 | 8.3:-7208049 | MS.gene042294:CDS |
| GGACCAAAACTGCATATGCT+GGG | 0.528427 | 8.3:-7209832 | MS.gene042294:CDS |
| CCGCTGATCTTGCTTATACG+AGG | 0.533890 | 8.3:-7204491 | MS.gene042294:CDS |
| AAGTAGAGATTCACAAATCC+CGG | 0.535140 | 8.3:+7207997 | None:intergenic |
| CGGTATTAAGCCGGAGCCCA+CGG | 0.538463 | 8.3:+7203763 | None:intergenic |
| TCAGGACAGCTTTGGAATGT+GGG | 0.540299 | 8.3:-7208765 | MS.gene042294:CDS |
| ATTTCTTCTGACAGAATCCA+TGG | 0.540689 | 8.3:+7209863 | None:intergenic |
| AGTATCACTTAGCAGACTAA+AGG | 0.541579 | 8.3:-7207794 | MS.gene042294:CDS |
| GGATGGGGTCTACCGTTGCT+GGG | 0.542829 | 8.3:-7208034 | MS.gene042294:CDS |
| AATCATTTGGTCAGTTGGCG+TGG | 0.546844 | 8.3:-7203829 | MS.gene042294:CDS |
| CTCTACGAATCTTCCATGTA+CGG | 0.546988 | 8.3:+7204094 | None:intergenic |
| GAGGAGGAATTCTTTCGGAC+TGG | 0.547668 | 8.3:-7203702 | MS.gene042294:CDS |
| TGTCAGAAGAAATAGATTCA+GGG | 0.548424 | 8.3:-7209853 | MS.gene042294:CDS |
| ATTGGGCAGCATATTACGGC+AGG | 0.549580 | 8.3:-7207459 | MS.gene042294:intron |
| TTAAAGAGAAAGGGCTTCCG+TGG | 0.557276 | 8.3:-7203780 | MS.gene042294:CDS |
| GACCATGTGCATAATATACA+TGG | 0.559880 | 8.3:+7211378 | None:intergenic |
| ATTCTTCCTCGGTATTAAGC+CGG | 0.562168 | 8.3:+7203754 | None:intergenic |
| CCATCCTGAACAATTTCTGC+AGG | 0.563606 | 8.3:+7208051 | None:intergenic |
| TCAACACCACTTGAAGAGAC+AGG | 0.563737 | 8.3:+7208824 | None:intergenic |
| ATACTTGTGATTACAAAGCA+TGG | 0.565098 | 8.3:+7212062 | None:intergenic |
| ATTTCCGGGATAAATTTGGA+TGG | 0.565666 | 8.3:-7207492 | MS.gene042294:CDS |
| AACACCTCTGCTGTGCCTAA+CGG | 0.566570 | 8.3:-7209282 | MS.gene042294:CDS |
| AGGAATTCTTTCGGACTGGT+AGG | 0.566668 | 8.3:-7203698 | MS.gene042294:CDS |
| ATTGCTCACTGCAATTGGCT+GGG | 0.569273 | 8.3:+7208928 | None:intergenic |
| GAATCAGCAAAGTGATGCAG+AGG | 0.570072 | 8.3:-7203721 | MS.gene042294:CDS |
| TCAGCAAAGTGATGCAGAGG+AGG | 0.570168 | 8.3:-7203718 | MS.gene042294:CDS |
| GCAGAATCATCAACTGAACA+AGG | 0.575288 | 8.3:+7208719 | None:intergenic |
| GATCCAACTCACCAAAACCC+TGG | 0.576628 | 8.3:-7204525 | MS.gene042294:CDS |
| TTCGTGCAGATCCTAGTGAC+TGG | 0.577891 | 8.3:-7208144 | MS.gene042294:intron |
| TATGAAAGAGTCCAGTCACT+AGG | 0.581151 | 8.3:+7208133 | None:intergenic |
| CTGTGGAAGACACCCACGCA+GGG | 0.582346 | 8.3:+7208591 | None:intergenic |
| TTCGGAACTTTAGAAAAGAT+GGG | 0.582890 | 8.3:-7211600 | MS.gene042294:CDS |
| AACCATCCTGTCTCTTCAAG+TGG | 0.583378 | 8.3:-7208830 | MS.gene042294:CDS |
| TTAGCAGACTAAAGGAGGCA+AGG | 0.584150 | 8.3:-7207786 | MS.gene042294:CDS |
| CCGTCCATCCAAATTTATCC+CGG | 0.585048 | 8.3:+7207488 | None:intergenic |
| TAGCAGACTAAAGGAGGCAA+GGG | 0.588948 | 8.3:-7207785 | MS.gene042294:CDS |
| TTCCTTAAAGTTACAAACAG+AGG | 0.589046 | 8.3:-7204244 | MS.gene042294:CDS |
| TTGAGAAAGCAGTGTTGCGT+TGG | 0.592228 | 8.3:-7203806 | MS.gene042294:CDS |
| ACATTAGATTGGACTTTGGG+AGG | 0.592424 | 8.3:+7208097 | None:intergenic |
| AATCACCATTTACCTCCGTT+AGG | 0.593445 | 8.3:+7209267 | None:intergenic |
| AAGCGCAAGAAGATTATAGG+AGG | 0.598107 | 8.3:-7203611 | MS.gene042294:CDS |
| GTGTTTCACGGTAATGAACA+AGG | 0.598368 | 8.3:+7211173 | None:intergenic |
| ATCACTTAGCAGACTAAAGG+AGG | 0.601189 | 8.3:-7207791 | MS.gene042294:CDS |
| CCATGGTGCAGATGGGTCAG+AGG | 0.602933 | 8.3:+7209880 | None:intergenic |
| TTTCAATGCAATTCCAAACA+GGG | 0.604567 | 8.3:+7207666 | None:intergenic |
| GACCAAAACTGCATATGCTG+GGG | 0.606069 | 8.3:-7209831 | MS.gene042294:CDS |
| GATACTCAAAAGTAACAACT+TGG | 0.606670 | 8.3:+7207947 | None:intergenic |
| ACAGAATCCATGGTGCAGAT+GGG | 0.607338 | 8.3:+7209873 | None:intergenic |
| TCCAATCTAATGTGTGTATG+TGG | 0.609379 | 8.3:-7208087 | MS.gene042294:CDS |
| TTCACAAATCCCGGAGAATG+CGG | 0.610070 | 8.3:+7208006 | None:intergenic |
| GCTGATCTTGCTTATACGAG+GGG | 0.612221 | 8.3:-7204489 | MS.gene042294:CDS |
| GGCAAAGCCAAACTTGGTCA+CGG | 0.614024 | 8.3:-7204547 | MS.gene042294:CDS |
| CCTCTGACCCATCTGCACCA+TGG | 0.617433 | 8.3:-7209880 | MS.gene042294:CDS |
| TAAAGTTCCGAAGCATCTTG+CGG | 0.620816 | 8.3:+7211611 | None:intergenic |
| AGCTTAGCTGGAAATATCAG+TGG | 0.624080 | 8.3:-7204405 | MS.gene042294:CDS |
| TCATTACCGTGAAACACAAG+AGG | 0.627907 | 8.3:-7211167 | MS.gene042294:intron |
| GAAGCTTACCTTGCAATGTG+TGG | 0.628537 | 8.3:+7212663 | None:intergenic |
| AGAATCATCAACTGAACAAG+GGG | 0.629791 | 8.3:+7208721 | None:intergenic |
| GCTCTATGTGAAAGATACAC+TGG | 0.629798 | 8.3:-7204325 | MS.gene042294:CDS |
| AAGTTGACATGAAAATGAAG+AGG | 0.630398 | 8.3:-7203427 | None:intergenic |
| TGGAGGAAGCAAGAACGAGA+TGG | 0.631278 | 8.3:-7212107 | MS.gene042294:CDS |
| TTACTGATGTGTCCCCTGCG+TGG | 0.631639 | 8.3:-7208604 | MS.gene042294:CDS |
| GTCTTCCACAGAGAAATCAA+AGG | 0.632840 | 8.3:-7208579 | MS.gene042294:intron |
| TAAAGAGAAAGGGCTTCCGT+GGG | 0.635069 | 8.3:-7203779 | MS.gene042294:CDS |
| ACCTCCGTTAGGCACAGCAG+AGG | 0.636051 | 8.3:+7209278 | None:intergenic |
| CGATGTTGCGAGCATTATGG+AGG | 0.637890 | 8.3:-7212124 | MS.gene042294:CDS |
| AATGCGGTGGTACCCAGCAA+CGG | 0.638258 | 8.3:+7208022 | None:intergenic |
| ATCCATGTATATTATGCACA+TGG | 0.639136 | 8.3:-7211380 | MS.gene042294:CDS |
| CAGAATCATCAACTGAACAA+GGG | 0.639781 | 8.3:+7208720 | None:intergenic |
| GTTGGCCCTTAATCAAGCAA+AGG | 0.646848 | 8.3:-7203583 | MS.gene042294:intron |
| TGGCTCACTGGAAACTAGCA+CGG | 0.646998 | 8.3:-7204385 | MS.gene042294:CDS |
| TAAGATCGTTTGCTACGACT+AGG | 0.647975 | 8.3:+7209304 | None:intergenic |
| TTTCACATAGAGCTGCTCCT+CGG | 0.648879 | 8.3:+7204335 | None:intergenic |
| TCTGTGGAAGACACCCACGC+AGG | 0.652477 | 8.3:+7208590 | None:intergenic |
| ATGATGGCAAATAACTTACC+GGG | 0.653975 | 8.3:-7212716 | MS.gene042294:CDS |
| GGAAACCTTTGATTTCTCTG+TGG | 0.654481 | 8.3:+7208574 | None:intergenic |
| TTCATTAACGGATGAAACTG+AGG | 0.656620 | 8.3:+7208688 | None:intergenic |
| ACTACTGAATATGATGCGCA+AGG | 0.659271 | 8.3:-7207595 | MS.gene042294:CDS |
| CACCACTTGAAGAGACAGGA+TGG | 0.667219 | 8.3:+7208828 | None:intergenic |
| TCTGATCCAACAAGTTGACC+CGG | 0.667535 | 8.3:+7212698 | None:intergenic |
| AAGGATATCGAAATGAGCAG+AGG | 0.668623 | 8.3:-7208853 | MS.gene042294:CDS |
| ACCTCTGCTGTGCCTAACGG+AGG | 0.674338 | 8.3:-7209279 | MS.gene042294:intron |
| CAGTCAAAAGCCATGAACTG+AGG | 0.675587 | 8.3:-7209359 | MS.gene042294:CDS |
| ACAAATCCCGGAGAATGCGG+TGG | 0.677994 | 8.3:+7208009 | None:intergenic |
| ACCAAAACTGCATATGCTGG+GGG | 0.678637 | 8.3:-7209830 | MS.gene042294:intron |
| TGGGCTCCGGCTTAATACCG+AGG | 0.693204 | 8.3:-7203760 | MS.gene042294:CDS |
| TGTGGAAGACACCCACGCAG+GGG | 0.697131 | 8.3:+7208592 | None:intergenic |
| TATGGAAGAGAAGAACAACT+GGG | 0.717360 | 8.3:-7207893 | MS.gene042294:CDS |
| CCATAATGCTCGCAACATCG+AGG | 0.721796 | 8.3:+7212127 | None:intergenic |
| TCCAACTCACCAAAACCCTG+GGG | 0.739177 | 8.3:-7204523 | MS.gene042294:CDS |
| CCTCGTATAAGCAAGATCAG+CGG | 0.742504 | 8.3:+7204491 | None:intergenic |
| CCAACTCACCAAAACCCTGG+GGG | 0.742962 | 8.3:-7204522 | MS.gene042294:CDS |
| AAATTCCGAGAACCTTACCG+AGG | 0.753280 | 8.3:-7204352 | MS.gene042294:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 7203428 | 7212741 | 7203428 | ID=MS.gene042294 |
| chr8.3 | mRNA | 7203428 | 7212741 | 7203428 | ID=MS.gene042294.t1;Parent=MS.gene042294 |
| chr8.3 | exon | 7212672 | 7212741 | 7212672 | ID=MS.gene042294.t1.exon1;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7212672 | 7212741 | 7212672 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7212025 | 7212150 | 7212025 | ID=MS.gene042294.t1.exon2;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7212025 | 7212150 | 7212025 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7211540 | 7211655 | 7211540 | ID=MS.gene042294.t1.exon3;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7211540 | 7211655 | 7211540 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7211332 | 7211420 | 7211332 | ID=MS.gene042294.t1.exon4;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7211332 | 7211420 | 7211332 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7211168 | 7211213 | 7211168 | ID=MS.gene042294.t1.exon5;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7211168 | 7211213 | 7211168 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7209831 | 7209948 | 7209831 | ID=MS.gene042294.t1.exon6;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7209831 | 7209948 | 7209831 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7209280 | 7209399 | 7209280 | ID=MS.gene042294.t1.exon7;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7209280 | 7209399 | 7209280 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7209132 | 7209190 | 7209132 | ID=MS.gene042294.t1.exon8;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7209132 | 7209190 | 7209132 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7208580 | 7208996 | 7208580 | ID=MS.gene042294.t1.exon9;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7208580 | 7208996 | 7208580 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7207460 | 7208157 | 7207460 | ID=MS.gene042294.t1.exon10;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7207460 | 7208157 | 7207460 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7204056 | 7204602 | 7204056 | ID=MS.gene042294.t1.exon11;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7204056 | 7204602 | 7204056 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7203584 | 7203892 | 7203584 | ID=MS.gene042294.t1.exon12;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7203584 | 7203892 | 7203584 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| chr8.3 | exon | 7203428 | 7203483 | 7203428 | ID=MS.gene042294.t1.exon13;Parent=MS.gene042294.t1 |
| chr8.3 | CDS | 7203428 | 7203483 | 7203428 | ID=cds.MS.gene042294.t1;Parent=MS.gene042294.t1 |
| Gene Sequence |
| Protein sequence |