Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042311.t1 | RHN64364.1 | 97.3 | 407 | 11 | 0 | 1 | 407 | 1 | 407 | 8.70E-233 | 815.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042311.t1 | Q42381 | 35.8 | 419 | 228 | 14 | 12 | 407 | 3 | 403 | 2.5e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042311.t1 | A0A396IJ64 | 97.3 | 407 | 11 | 0 | 1 | 407 | 1 | 407 | 6.3e-233 | 815.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene042311.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042311.t1 | MTR_4g122030 | 75.854 | 410 | 36 | 4 | 1 | 407 | 1 | 350 | 0.0 | 602 |
| MS.gene042311.t1 | MTR_3g465010 | 37.037 | 405 | 219 | 15 | 13 | 406 | 8 | 387 | 2.83e-72 | 231 |
| MS.gene042311.t1 | MTR_4g007130 | 34.390 | 410 | 239 | 11 | 8 | 407 | 20 | 409 | 3.36e-63 | 209 |
| MS.gene042311.t1 | MTR_4g095700 | 33.571 | 420 | 241 | 12 | 11 | 407 | 7 | 411 | 3.86e-62 | 206 |
| MS.gene042311.t1 | MTR_5g015810 | 33.976 | 415 | 242 | 12 | 7 | 406 | 5 | 402 | 3.77e-60 | 201 |
| MS.gene042311.t1 | MTR_5g015810 | 32.551 | 341 | 205 | 8 | 81 | 406 | 1 | 331 | 9.98e-43 | 152 |
| MS.gene042311.t1 | MTR_5g015810 | 31.973 | 294 | 188 | 6 | 115 | 406 | 2 | 285 | 1.14e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042311.t1 | AT4G37580 | 35.817 | 416 | 232 | 14 | 12 | 407 | 3 | 403 | 9.68e-69 | 223 |
| MS.gene042311.t1 | AT2G23060 | 33.570 | 423 | 241 | 13 | 11 | 407 | 5 | 413 | 1.20e-65 | 215 |
| MS.gene042311.t1 | AT4G37580 | 33.994 | 353 | 204 | 10 | 74 | 407 | 4 | 346 | 7.55e-54 | 182 |
| MS.gene042311.t1 | AT2G30090 | 34.390 | 410 | 214 | 20 | 13 | 406 | 15 | 385 | 1.70e-53 | 182 |
| MS.gene042311.t1 | AT5G67430 | 33.007 | 409 | 230 | 13 | 11 | 406 | 8 | 385 | 3.28e-52 | 179 |
| MS.gene042311.t1 | AT5G67430 | 31.861 | 317 | 196 | 8 | 91 | 406 | 23 | 320 | 3.79e-38 | 140 |
| MS.gene042311.t1 | AT2G23060 | 30.208 | 288 | 188 | 7 | 124 | 407 | 1 | 279 | 9.06e-36 | 133 |
Find 85 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTGTGCAAACTCCTTC+TGG | 0.261524 | 8.3:-7059427 | MS.gene042311:CDS |
| GAGCTTGTTGGAGTTGTTAA+AGG | 0.270934 | 8.3:-7059457 | MS.gene042311:CDS |
| GATTAATGGGACTACTAAAA+AGG | 0.272190 | 8.3:-7059744 | MS.gene042311:CDS |
| AGGGTTGTTATAACTGAGTT+AGG | 0.299823 | 8.3:-7058398 | MS.gene042311:CDS |
| GTGACCCTTTATCTAGGATT+AGG | 0.304028 | 8.3:-7059688 | MS.gene042311:CDS |
| AGTTGCATTTGTTGGTGAAT+AGG | 0.308058 | 8.3:+7058981 | None:intergenic |
| TTTCAAGATTCTTGTGTAGA+AGG | 0.309351 | 8.3:+7058844 | None:intergenic |
| AGAAACTGTACTGAGATTAA+TGG | 0.318075 | 8.3:-7059758 | MS.gene042311:CDS |
| TAGAACCTAATCCTAGATAA+AGG | 0.318214 | 8.3:+7059683 | None:intergenic |
| ATCTAATGGATACAACTCTT+TGG | 0.333407 | 8.3:+7058820 | None:intergenic |
| GTTGGTGAATAGGTTATTAG+AGG | 0.345184 | 8.3:+7058991 | None:intergenic |
| TTCTTAGAAATGTGGTTTGT+TGG | 0.348075 | 8.3:+7058908 | None:intergenic |
| ATGTGTAACAACAGTACATT+TGG | 0.356097 | 8.3:-7058527 | MS.gene042311:CDS |
| GAAACTGTACTGAGATTAAT+GGG | 0.378728 | 8.3:-7059757 | MS.gene042311:CDS |
| AGAATAATGTCCATATCTAA+TGG | 0.380464 | 8.3:+7058806 | None:intergenic |
| GCGGGCTAATGGAATCAATA+TGG | 0.381668 | 8.3:-7058460 | MS.gene042311:CDS |
| AGAGAATCTTGGCGGGCTAA+TGG | 0.382594 | 8.3:-7058471 | MS.gene042311:CDS |
| TCTTAGAAATGTGGTTTGTT+GGG | 0.383397 | 8.3:+7058909 | None:intergenic |
| GTTATAACTGAGTTAGGGTT+TGG | 0.401121 | 8.3:-7058392 | MS.gene042311:CDS |
| TTCAAGATGGGTTGTATACT+AGG | 0.416953 | 8.3:-7059397 | MS.gene042311:CDS |
| TGATGATGAAAATGATGAAT+TGG | 0.425086 | 8.3:-7058282 | MS.gene042311:CDS |
| TGGAGGTTTACATCAAGATT+AGG | 0.428439 | 8.3:-7058440 | MS.gene042311:CDS |
| CATGATAATTACCTGTGTAT+AGG | 0.429059 | 8.3:+7059361 | None:intergenic |
| TTCTGGATCACTCTTCAAGA+TGG | 0.429973 | 8.3:-7059410 | MS.gene042311:CDS |
| ATTGAAATAGTTGCATTTGT+TGG | 0.433692 | 8.3:+7058973 | None:intergenic |
| GTTGAAAACAAGGAGCTTGT+TGG | 0.434978 | 8.3:-7059469 | MS.gene042311:CDS |
| AGAGTTGTATCCATTAGATA+TGG | 0.437070 | 8.3:-7058816 | MS.gene042311:CDS |
| AAATTTACTGTGCAGGAGAA+AGG | 0.442722 | 8.3:-7059107 | MS.gene042311:intron |
| GTAATGGTGACCCTTTATCT+AGG | 0.452354 | 8.3:-7059694 | MS.gene042311:CDS |
| GGAATGTGTTTGTTGATCCT+AGG | 0.455878 | 8.3:-7058235 | MS.gene042311:CDS |
| CAAAATTATTTCAACCACTT+AGG | 0.457975 | 8.3:-7058616 | MS.gene042311:CDS |
| GGGTTGTTATAACTGAGTTA+GGG | 0.463044 | 8.3:-7058397 | MS.gene042311:CDS |
| CTATCCCCTTCGTGTTATGT+TGG | 0.463391 | 8.3:-7059663 | MS.gene042311:intron |
| TAGCATCCACTCTTCAATTG+AGG | 0.471060 | 8.3:+7059063 | None:intergenic |
| GTTAGTTATTACAAAGATGA+AGG | 0.474099 | 8.3:-7058755 | MS.gene042311:CDS |
| CATGGAGAGGGAGAGAATCT+TGG | 0.478715 | 8.3:-7058482 | MS.gene042311:CDS |
| TGTGTATAGGAGAGACTCTA+AGG | 0.479289 | 8.3:+7059374 | None:intergenic |
| AATAACTAACCCAAGTTCCT+AGG | 0.480250 | 8.3:+7058768 | None:intergenic |
| TCTGGATCACTCTTCAAGAT+GGG | 0.484366 | 8.3:-7059409 | MS.gene042311:CDS |
| GATAGAGACGTTAAAGTGGT+GGG | 0.487062 | 8.3:-7059791 | MS.gene042311:CDS |
| GAATGTGTTTGTTGATCCTA+GGG | 0.487462 | 8.3:-7058234 | MS.gene042311:CDS |
| AGAACCTAATCCTAGATAAA+GGG | 0.491131 | 8.3:+7059684 | None:intergenic |
| CACGACATAGAATCAATTTG+AGG | 0.498622 | 8.3:+7058347 | None:intergenic |
| AATTTACTGTGCAGGAGAAA+GGG | 0.506218 | 8.3:-7059106 | MS.gene042311:intron |
| TGTGTAACAACAGTACATTT+GGG | 0.506653 | 8.3:-7058526 | MS.gene042311:CDS |
| AACAAACCACATTTCTAAGA+AGG | 0.512894 | 8.3:-7058906 | MS.gene042311:CDS |
| TTGGGAAACTAGTTGGTGGA+TGG | 0.520506 | 8.3:+7058927 | None:intergenic |
| TTCACCAACATGATGAGTAA+TGG | 0.521767 | 8.3:-7059710 | MS.gene042311:CDS |
| CTTTATGGACTTCATGGAGA+GGG | 0.530822 | 8.3:-7058494 | MS.gene042311:CDS |
| TGGTTTGTTGGGAAACTAGT+TGG | 0.533846 | 8.3:+7058920 | None:intergenic |
| AGCTGAGATGGTTGAAAACA+AGG | 0.541254 | 8.3:-7059479 | MS.gene042311:CDS |
| AAAGTACAACAAGCTCATCA+TGG | 0.542735 | 8.3:-7058697 | MS.gene042311:CDS |
| AAAACTCAGCCTAGGAACTT+GGG | 0.550630 | 8.3:-7058777 | MS.gene042311:CDS |
| TTTGTTGGGAAACTAGTTGG+TGG | 0.550774 | 8.3:+7058923 | None:intergenic |
| TGACATCCTTCTTAGAAATG+TGG | 0.553319 | 8.3:+7058900 | None:intergenic |
| TGATGAAAATGATGAATTGG+TGG | 0.563601 | 8.3:-7058279 | MS.gene042311:CDS |
| TGAGGAACATGGTTTACAAG+TGG | 0.564375 | 8.3:+7058365 | None:intergenic |
| ATAGAGACGTTAAAGTGGTG+GGG | 0.567023 | 8.3:-7059790 | MS.gene042311:CDS |
| GGAGAGGGAGAGAATCTTGG+CGG | 0.572469 | 8.3:-7058479 | MS.gene042311:CDS |
| GAAGAGTGGATGCTAAGAAA+TGG | 0.583171 | 8.3:-7059055 | MS.gene042311:CDS |
| TGAAGATAGAGACGTTAAAG+TGG | 0.583839 | 8.3:-7059795 | MS.gene042311:CDS |
| TAGAATCAATTTGAGGAACA+TGG | 0.588050 | 8.3:+7058354 | None:intergenic |
| AGATAGAGACGTTAAAGTGG+TGG | 0.592949 | 8.3:-7059792 | MS.gene042311:CDS |
| CTGTGCAGGAGAAAGGGAGT+TGG | 0.597746 | 8.3:-7059100 | MS.gene042311:intron |
| GTCGCATGAAGAAACCTAAG+TGG | 0.602408 | 8.3:+7058602 | None:intergenic |
| TGCGACATTAAATCATGCAA+AGG | 0.605817 | 8.3:-7058585 | MS.gene042311:CDS |
| TGGCCTGCAGGTAGCTGAGA+TGG | 0.614618 | 8.3:-7059491 | MS.gene042311:intron |
| GAGAGGGAGAGAATCTTGGC+GGG | 0.615284 | 8.3:-7058478 | MS.gene042311:CDS |
| GAGGTGATGAAGAGACAACT+CGG | 0.616820 | 8.3:-7058257 | MS.gene042311:CDS |
| ACACACCAACATAACACGAA+GGG | 0.618929 | 8.3:+7059658 | None:intergenic |
| GTCACCATTACTCATCATGT+TGG | 0.630070 | 8.3:+7059706 | None:intergenic |
| TTGTAACCTCAATTGAAGAG+TGG | 0.632770 | 8.3:-7059069 | MS.gene042311:CDS |
| CACATACAGTATAGAGAGCG+AGG | 0.638269 | 8.3:-7059837 | MS.gene042311:CDS |
| TGTCGTGTATTGATGATATG+TGG | 0.645905 | 8.3:-7058331 | MS.gene042311:CDS |
| AGGTGATGAAGAGACAACTC+GGG | 0.647405 | 8.3:-7058256 | MS.gene042311:CDS |
| TCTTTATGGACTTCATGGAG+AGG | 0.647924 | 8.3:-7058495 | MS.gene042311:CDS |
| TGAAAATGATGAATTGGTGG+AGG | 0.648658 | 8.3:-7058276 | MS.gene042311:CDS |
| TTAGAGTCTCTCCTATACAC+AGG | 0.650718 | 8.3:-7059372 | MS.gene042311:intron |
| GAGACGTTAAAGTGGTGGGG+AGG | 0.666370 | 8.3:-7059787 | MS.gene042311:CDS |
| CACACCAACATAACACGAAG+GGG | 0.668902 | 8.3:+7059659 | None:intergenic |
| TACACACCAACATAACACGA+AGG | 0.672948 | 8.3:+7059657 | None:intergenic |
| GGCTAATGGAATCAATATGG+AGG | 0.674786 | 8.3:-7058457 | MS.gene042311:CDS |
| ATGGAGATATATGATGAGTG+AGG | 0.681980 | 8.3:+7058946 | None:intergenic |
| GAGTCAAACATTCTCAAACA+AGG | 0.685595 | 8.3:+7058551 | None:intergenic |
| ATCTTGAAGAGTGATCCAGA+AGG | 0.751962 | 8.3:+7059412 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTGTTTTAACTTGA+AGG | + | chr8.3:7059444-7059463 | None:intergenic | 15.0% |
| !! | AAGATTAGGAGAAAAATTAA+AGG | - | chr8.3:7059645-7059664 | MS.gene042311:intron | 20.0% |
| !! | ACAGTAAATTTAATGTAATG+TGG | + | chr8.3:7058955-7058974 | None:intergenic | 20.0% |
| !! | ATATAATATATATACACCTG+CGG | + | chr8.3:7058528-7058547 | None:intergenic | 20.0% |
| !!! | TATATGATGATGATACATAA+TGG | - | chr8.3:7058560-7058579 | MS.gene042311:CDS | 20.0% |
| ! | AGAATAATGTCCATATCTAA+TGG | + | chr8.3:7059268-7059287 | None:intergenic | 25.0% |
| ! | ATTAATGGGACTACTAAAAA+GGG | - | chr8.3:7058328-7058347 | MS.gene042311:CDS | 25.0% |
| ! | ATTGAAATAGTTGCATTTGT+TGG | + | chr8.3:7059101-7059120 | None:intergenic | 25.0% |
| ! | CAAAATTATTTCAACCACTT+AGG | - | chr8.3:7059455-7059474 | MS.gene042311:CDS | 25.0% |
| ! | GTTAGTTATTACAAAGATGA+AGG | - | chr8.3:7059316-7059335 | MS.gene042311:intron | 25.0% |
| ! | TTACATTAAATTTACTGTGC+AGG | - | chr8.3:7058957-7058976 | MS.gene042311:CDS | 25.0% |
| !! | AGAAAAATTAAAGGAGTGTA+GGG | - | chr8.3:7059654-7059673 | MS.gene042311:intron | 25.0% |
| !! | TGATGATGAAAATGATGAAT+TGG | - | chr8.3:7059789-7059808 | MS.gene042311:CDS | 25.0% |
| !!! | AAAGAGTATTTGATGAAAAG+AGG | + | chr8.3:7058472-7058491 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTCTTTTTCTTTA+TGG | - | chr8.3:7059562-7059581 | MS.gene042311:intron | 25.0% |
| AGAAACTGTACTGAGATTAA+TGG | - | chr8.3:7058313-7058332 | MS.gene042311:CDS | 30.0% | |
| AGAACCTAATCCTAGATAAA+GGG | + | chr8.3:7058390-7058409 | None:intergenic | 30.0% | |
| AGAGTTGTATCCATTAGATA+TGG | - | chr8.3:7059255-7059274 | MS.gene042311:intron | 30.0% | |
| ATGTGTAACAACAGTACATT+TGG | - | chr8.3:7059544-7059563 | MS.gene042311:intron | 30.0% | |
| CATGATAATTACCTGTGTAT+AGG | + | chr8.3:7058713-7058732 | None:intergenic | 30.0% | |
| CTATACACAGGTAATTATCA+TGG | - | chr8.3:7058711-7058730 | MS.gene042311:CDS | 30.0% | |
| CTCTTTCAAATCTACTTTAC+TGG | - | chr8.3:7058486-7058505 | MS.gene042311:CDS | 30.0% | |
| GAAACTGTACTGAGATTAAT+GGG | - | chr8.3:7058314-7058333 | MS.gene042311:CDS | 30.0% | |
| GATTAATGGGACTACTAAAA+AGG | - | chr8.3:7058327-7058346 | MS.gene042311:CDS | 30.0% | |
| TAGAACCTAATCCTAGATAA+AGG | + | chr8.3:7058391-7058410 | None:intergenic | 30.0% | |
| TAGAATCAATTTGAGGAACA+TGG | + | chr8.3:7059720-7059739 | None:intergenic | 30.0% | |
| TGATGAAAATGATGAATTGG+TGG | - | chr8.3:7059792-7059811 | MS.gene042311:CDS | 30.0% | |
| TGTGTAACAACAGTACATTT+GGG | - | chr8.3:7059545-7059564 | MS.gene042311:intron | 30.0% | |
| TTTCAAGATTCTTGTGTAGA+AGG | + | chr8.3:7059230-7059249 | None:intergenic | 30.0% | |
| ! | AACAAACCACATTTCTAAGA+AGG | - | chr8.3:7059165-7059184 | MS.gene042311:intron | 30.0% |
| ! | ATCTAATGGATACAACTCTT+TGG | + | chr8.3:7059254-7059273 | None:intergenic | 30.0% |
| ! | CATGGATCATTTTCAGTTTA+TGG | - | chr8.3:7059392-7059411 | MS.gene042311:CDS | 30.0% |
| ! | CTTTTTCTTTATGGACTTCA+TGG | - | chr8.3:7059571-7059590 | MS.gene042311:intron | 30.0% |
| ! | GAGAAAAATTAAAGGAGTGT+AGG | - | chr8.3:7059653-7059672 | MS.gene042311:intron | 30.0% |
| ! | TATTTTGTGACGCTATATAG+AGG | + | chr8.3:7058772-7058791 | None:intergenic | 30.0% |
| ! | TTCTTAGAAATGTGGTTTGT+TGG | + | chr8.3:7059166-7059185 | None:intergenic | 30.0% |
| !! | GTTATCCCTAACTATTTTAG+TGG | - | chr8.3:7058854-7058873 | MS.gene042311:CDS | 30.0% |
| !! | TCTTAGAAATGTGGTTTGTT+GGG | + | chr8.3:7059165-7059184 | None:intergenic | 30.0% |
| !!! | ATGAGCTTGTTGTACTTTTA+TGG | + | chr8.3:7059372-7059391 | None:intergenic | 30.0% |
| !!! | TGAGCTTGTTGTACTTTTAT+GGG | + | chr8.3:7059371-7059390 | None:intergenic | 30.0% |
| AAAGTACAACAAGCTCATCA+TGG | - | chr8.3:7059374-7059393 | MS.gene042311:CDS | 35.0% | |
| AAATTTACTGTGCAGGAGAA+AGG | - | chr8.3:7058964-7058983 | MS.gene042311:CDS | 35.0% | |
| AATAACTAACCCAAGTTCCT+AGG | + | chr8.3:7059306-7059325 | None:intergenic | 35.0% | |
| AATTTACTGTGCAGGAGAAA+GGG | - | chr8.3:7058965-7058984 | MS.gene042311:CDS | 35.0% | |
| AGGGTTGTTATAACTGAGTT+AGG | - | chr8.3:7059673-7059692 | MS.gene042311:CDS | 35.0% | |
| ATGGAGATATATGATGAGTG+AGG | + | chr8.3:7059128-7059147 | None:intergenic | 35.0% | |
| ATGTGGTACACAAAAAGACT+TGG | - | chr8.3:7059757-7059776 | MS.gene042311:CDS | 35.0% | |
| CACGACATAGAATCAATTTG+AGG | + | chr8.3:7059727-7059746 | None:intergenic | 35.0% | |
| CACGACTAATACAATCTGTA+TGG | + | chr8.3:7058900-7058919 | None:intergenic | 35.0% | |
| GAGTCAAACATTCTCAAACA+AGG | + | chr8.3:7059523-7059542 | None:intergenic | 35.0% | |
| GGGTTGTTATAACTGAGTTA+GGG | - | chr8.3:7059674-7059693 | MS.gene042311:CDS | 35.0% | |
| GTTATAACTGAGTTAGGGTT+TGG | - | chr8.3:7059679-7059698 | MS.gene042311:CDS | 35.0% | |
| TCAAATATATATGTAGCCGC+AGG | - | chr8.3:7058509-7058528 | MS.gene042311:CDS | 35.0% | |
| TGAAAATGATGAATTGGTGG+AGG | - | chr8.3:7059795-7059814 | MS.gene042311:CDS | 35.0% | |
| TGAAGATAGAGACGTTAAAG+TGG | - | chr8.3:7058276-7058295 | MS.gene042311:CDS | 35.0% | |
| TGACATCCTTCTTAGAAATG+TGG | + | chr8.3:7059174-7059193 | None:intergenic | 35.0% | |
| TGCGACATTAAATCATGCAA+AGG | - | chr8.3:7059486-7059505 | MS.gene042311:intron | 35.0% | |
| TGCGACCACTAAAATAGTTA+GGG | + | chr8.3:7058862-7058881 | None:intergenic | 35.0% | |
| TGGAGGTTTACATCAAGATT+AGG | - | chr8.3:7059631-7059650 | MS.gene042311:intron | 35.0% | |
| TTCACCAACATGATGAGTAA+TGG | - | chr8.3:7058361-7058380 | MS.gene042311:CDS | 35.0% | |
| TTGTAACCTCAATTGAAGAG+TGG | - | chr8.3:7059002-7059021 | MS.gene042311:CDS | 35.0% | |
| ! | AGTTGCATTTGTTGGTGAAT+AGG | + | chr8.3:7059093-7059112 | None:intergenic | 35.0% |
| ! | GAATGTGTTTGTTGATCCTA+GGG | - | chr8.3:7059837-7059856 | MS.gene042311:CDS | 35.0% |
| ! | GTTGGTGAATAGGTTATTAG+AGG | + | chr8.3:7059083-7059102 | None:intergenic | 35.0% |
| ! | TGTCGTGTATTGATGATATG+TGG | - | chr8.3:7059740-7059759 | MS.gene042311:CDS | 35.0% |
| ! | TGTTATTCTTTTCTGTGGCT+AGG | + | chr8.3:7059057-7059076 | None:intergenic | 35.0% |
| !! | GGCATTGTTATTCTTTTCTG+TGG | + | chr8.3:7059062-7059081 | None:intergenic | 35.0% |
| !! | TTCAAGATGGGTTGTATACT+AGG | - | chr8.3:7058674-7058693 | MS.gene042311:CDS | 35.0% |
| AAAAACTCAGCCTAGGAACT+TGG | - | chr8.3:7059293-7059312 | MS.gene042311:intron | 40.0% | |
| AAAACTCAGCCTAGGAACTT+GGG | - | chr8.3:7059294-7059313 | MS.gene042311:intron | 40.0% | |
| ACACACCAACATAACACGAA+GGG | + | chr8.3:7058416-7058435 | None:intergenic | 40.0% | |
| AGATAGAGACGTTAAAGTGG+TGG | - | chr8.3:7058279-7058298 | MS.gene042311:CDS | 40.0% | |
| AGCTGAGATGGTTGAAAACA+AGG | - | chr8.3:7058592-7058611 | MS.gene042311:CDS | 40.0% | |
| ATAGAGACGTTAAAGTGGTG+GGG | - | chr8.3:7058281-7058300 | MS.gene042311:CDS | 40.0% | |
| ATCTTGAAGAGTGATCCAGA+AGG | + | chr8.3:7058662-7058681 | None:intergenic | 40.0% | |
| CTCAAAGAAAAACTCAGCCT+AGG | - | chr8.3:7059286-7059305 | MS.gene042311:intron | 40.0% | |
| CTGCGACCACTAAAATAGTT+AGG | + | chr8.3:7058863-7058882 | None:intergenic | 40.0% | |
| CTTTATGGACTTCATGGAGA+GGG | - | chr8.3:7059577-7059596 | MS.gene042311:intron | 40.0% | |
| GAAGAGTGGATGCTAAGAAA+TGG | - | chr8.3:7059016-7059035 | MS.gene042311:CDS | 40.0% | |
| GATAGAGACGTTAAAGTGGT+GGG | - | chr8.3:7058280-7058299 | MS.gene042311:CDS | 40.0% | |
| GGCTAATGGAATCAATATGG+AGG | - | chr8.3:7059614-7059633 | MS.gene042311:intron | 40.0% | |
| GTAATGGTGACCCTTTATCT+AGG | - | chr8.3:7058377-7058396 | MS.gene042311:CDS | 40.0% | |
| GTCACCATTACTCATCATGT+TGG | + | chr8.3:7058368-7058387 | None:intergenic | 40.0% | |
| GTTGAAAACAAGGAGCTTGT+TGG | - | chr8.3:7058602-7058621 | MS.gene042311:CDS | 40.0% | |
| TACACACCAACATAACACGA+AGG | + | chr8.3:7058417-7058436 | None:intergenic | 40.0% | |
| TAGCATCCACTCTTCAATTG+AGG | + | chr8.3:7059011-7059030 | None:intergenic | 40.0% | |
| TCTGGATCACTCTTCAAGAT+GGG | - | chr8.3:7058662-7058681 | MS.gene042311:CDS | 40.0% | |
| TCTTTATGGACTTCATGGAG+AGG | - | chr8.3:7059576-7059595 | MS.gene042311:intron | 40.0% | |
| TGAGGAACATGGTTTACAAG+TGG | + | chr8.3:7059709-7059728 | None:intergenic | 40.0% | |
| TGTGTATAGGAGAGACTCTA+AGG | + | chr8.3:7058700-7058719 | None:intergenic | 40.0% | |
| TTAGAGTCTCTCCTATACAC+AGG | - | chr8.3:7058699-7058718 | MS.gene042311:CDS | 40.0% | |
| TTCTGGATCACTCTTCAAGA+TGG | - | chr8.3:7058661-7058680 | MS.gene042311:CDS | 40.0% | |
| TTTGTTGGGAAACTAGTTGG+TGG | + | chr8.3:7059151-7059170 | None:intergenic | 40.0% | |
| ! | AAAAGTGTGCAAACTCCTTC+TGG | - | chr8.3:7058644-7058663 | MS.gene042311:CDS | 40.0% |
| ! | ATTCTTTTCTGTGGCTAGGA+AGG | + | chr8.3:7059053-7059072 | None:intergenic | 40.0% |
| ! | GGAATGTGTTTGTTGATCCT+AGG | - | chr8.3:7059836-7059855 | MS.gene042311:CDS | 40.0% |
| ! | GTGACCCTTTATCTAGGATT+AGG | - | chr8.3:7058383-7058402 | MS.gene042311:CDS | 40.0% |
| !! | GAGCTTGTTGGAGTTGTTAA+AGG | - | chr8.3:7058614-7058633 | MS.gene042311:CDS | 40.0% |
| !! | TGGTTTGTTGGGAAACTAGT+TGG | + | chr8.3:7059154-7059173 | None:intergenic | 40.0% |
| AGGTGATGAAGAGACAACTC+GGG | - | chr8.3:7059815-7059834 | MS.gene042311:CDS | 45.0% | |
| CACACCAACATAACACGAAG+GGG | + | chr8.3:7058415-7058434 | None:intergenic | 45.0% | |
| CACATACAGTATAGAGAGCG+AGG | - | chr8.3:7058234-7058253 | MS.gene042311:CDS | 45.0% | |
| CTATCCCCTTCGTGTTATGT+TGG | - | chr8.3:7058408-7058427 | MS.gene042311:CDS | 45.0% | |
| GAGGTGATGAAGAGACAACT+CGG | - | chr8.3:7059814-7059833 | MS.gene042311:CDS | 45.0% | |
| GATGATACATAATGGCCTGC+AGG | - | chr8.3:7058568-7058587 | MS.gene042311:CDS | 45.0% | |
| GTCGCATGAAGAAACCTAAG+TGG | + | chr8.3:7059472-7059491 | None:intergenic | 45.0% | |
| ! | GCGGGCTAATGGAATCAATA+TGG | - | chr8.3:7059611-7059630 | MS.gene042311:intron | 45.0% |
| !! | TTGGGAAACTAGTTGGTGGA+TGG | + | chr8.3:7059147-7059166 | None:intergenic | 45.0% |
| CATGGAGAGGGAGAGAATCT+TGG | - | chr8.3:7059589-7059608 | MS.gene042311:intron | 50.0% | |
| !! | AGAGAATCTTGGCGGGCTAA+TGG | - | chr8.3:7059600-7059619 | MS.gene042311:intron | 50.0% |
| CAACCATCTCAGCTACCTGC+AGG | + | chr8.3:7058586-7058605 | None:intergenic | 55.0% | |
| CTGTGCAGGAGAAAGGGAGT+TGG | - | chr8.3:7058971-7058990 | MS.gene042311:CDS | 55.0% | |
| GAGAGGGAGAGAATCTTGGC+GGG | - | chr8.3:7059593-7059612 | MS.gene042311:intron | 55.0% | |
| GGAGAGGGAGAGAATCTTGG+CGG | - | chr8.3:7059592-7059611 | MS.gene042311:intron | 55.0% | |
| ! | GAGACGTTAAAGTGGTGGGG+AGG | - | chr8.3:7058284-7058303 | MS.gene042311:CDS | 55.0% |
| TGGCCTGCAGGTAGCTGAGA+TGG | - | chr8.3:7058580-7058599 | MS.gene042311:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 7058226 | 7059867 | 7058226 | ID=MS.gene042311 |
| chr8.3 | mRNA | 7058226 | 7059867 | 7058226 | ID=MS.gene042311.t1;Parent=MS.gene042311 |
| chr8.3 | exon | 7059664 | 7059867 | 7059664 | ID=MS.gene042311.t1.exon1;Parent=MS.gene042311.t1 |
| chr8.3 | CDS | 7059664 | 7059867 | 7059664 | ID=cds.MS.gene042311.t1;Parent=MS.gene042311.t1 |
| chr8.3 | exon | 7059373 | 7059503 | 7059373 | ID=MS.gene042311.t1.exon2;Parent=MS.gene042311.t1 |
| chr8.3 | CDS | 7059373 | 7059503 | 7059373 | ID=cds.MS.gene042311.t1;Parent=MS.gene042311.t1 |
| chr8.3 | exon | 7058226 | 7059114 | 7058226 | ID=MS.gene042311.t1.exon3;Parent=MS.gene042311.t1 |
| chr8.3 | CDS | 7058226 | 7059114 | 7058226 | ID=cds.MS.gene042311.t1;Parent=MS.gene042311.t1 |
| Gene Sequence |
| Protein sequence |
