Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042501.t1 | XP_003624725.3 | 85.7 | 426 | 59 | 1 | 1 | 426 | 1 | 424 | 2.30E-207 | 731.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042501.t1 | Q93ZL5 | 36.2 | 340 | 165 | 10 | 84 | 406 | 117 | 421 | 4.7e-36 | 153.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042501.t1 | A0A396H9C4 | 85.7 | 426 | 59 | 1 | 1 | 426 | 1 | 424 | 1.6e-207 | 731.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene042501.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042501.t1 | MTR_7g086780 | 95.755 | 424 | 16 | 1 | 3 | 426 | 1 | 422 | 0.0 | 841 |
MS.gene042501.t1 | MTR_6g027460 | 50.267 | 374 | 139 | 9 | 8 | 350 | 10 | 367 | 5.88e-106 | 318 |
MS.gene042501.t1 | MTR_6g027450 | 46.939 | 343 | 143 | 9 | 8 | 335 | 10 | 328 | 8.38e-92 | 280 |
MS.gene042501.t1 | MTR_6g012450 | 34.545 | 495 | 223 | 17 | 8 | 425 | 5 | 475 | 3.53e-62 | 209 |
MS.gene042501.t1 | MTR_8g044220 | 33.051 | 472 | 226 | 15 | 5 | 426 | 8 | 439 | 4.42e-54 | 186 |
MS.gene042501.t1 | MTR_7g010950 | 35.294 | 442 | 209 | 15 | 38 | 425 | 67 | 485 | 2.79e-53 | 185 |
MS.gene042501.t1 | MTR_4g082060 | 31.633 | 490 | 231 | 16 | 8 | 424 | 5 | 463 | 1.41e-51 | 180 |
MS.gene042501.t1 | MTR_3g435480 | 34.358 | 358 | 187 | 8 | 83 | 421 | 116 | 444 | 1.03e-50 | 178 |
MS.gene042501.t1 | MTR_2g016030 | 56.000 | 100 | 37 | 1 | 97 | 196 | 41 | 133 | 5.09e-32 | 119 |
MS.gene042501.t1 | MTR_5g041420 | 65.116 | 86 | 24 | 1 | 86 | 165 | 121 | 206 | 1.34e-31 | 123 |
MS.gene042501.t1 | MTR_5g041380 | 31.594 | 345 | 127 | 15 | 97 | 426 | 121 | 371 | 4.16e-31 | 122 |
MS.gene042501.t1 | MTR_5g041400 | 29.825 | 342 | 137 | 11 | 97 | 426 | 113 | 363 | 9.99e-31 | 121 |
MS.gene042501.t1 | MTR_5g041530 | 69.014 | 71 | 22 | 0 | 86 | 156 | 123 | 193 | 3.85e-28 | 114 |
MS.gene042501.t1 | MTR_8g068210 | 51.807 | 83 | 39 | 1 | 77 | 158 | 5 | 87 | 9.55e-25 | 104 |
MS.gene042501.t1 | MTR_8g027295 | 44.444 | 117 | 60 | 3 | 98 | 213 | 19 | 131 | 1.10e-24 | 102 |
MS.gene042501.t1 | MTR_3g091820 | 55.556 | 81 | 30 | 1 | 77 | 157 | 23 | 97 | 1.46e-24 | 103 |
MS.gene042501.t1 | MTR_8g479350 | 57.534 | 73 | 31 | 0 | 103 | 175 | 68 | 140 | 2.08e-24 | 103 |
MS.gene042501.t1 | MTR_4g022370 | 65.517 | 58 | 20 | 0 | 99 | 156 | 78 | 135 | 7.44e-24 | 102 |
MS.gene042501.t1 | MTR_8g079060 | 38.462 | 130 | 55 | 3 | 58 | 187 | 3 | 107 | 7.48e-24 | 99.8 |
MS.gene042501.t1 | MTR_2g059540 | 73.469 | 49 | 13 | 0 | 103 | 151 | 31 | 79 | 8.15e-24 | 99.0 |
MS.gene042501.t1 | MTR_2g093220 | 66.102 | 59 | 20 | 0 | 98 | 156 | 35 | 93 | 1.54e-23 | 100 |
MS.gene042501.t1 | MTR_2g096740 | 56.000 | 75 | 33 | 0 | 82 | 156 | 56 | 130 | 1.94e-23 | 100 |
MS.gene042501.t1 | MTR_2g096740 | 56.000 | 75 | 33 | 0 | 82 | 156 | 41 | 115 | 1.97e-23 | 99.8 |
MS.gene042501.t1 | MTR_4g063780 | 37.903 | 124 | 74 | 2 | 90 | 211 | 60 | 182 | 3.82e-23 | 99.8 |
MS.gene042501.t1 | MTR_4g088580 | 70.909 | 55 | 16 | 0 | 104 | 158 | 56 | 110 | 4.83e-23 | 100 |
MS.gene042501.t1 | MTR_8g015840 | 69.231 | 52 | 16 | 0 | 103 | 154 | 20 | 71 | 5.62e-23 | 96.7 |
MS.gene042501.t1 | MTR_4g109980 | 67.925 | 53 | 17 | 0 | 101 | 153 | 38 | 90 | 8.53e-23 | 98.6 |
MS.gene042501.t1 | MTR_4g461080 | 62.121 | 66 | 24 | 1 | 91 | 155 | 16 | 81 | 1.76e-22 | 97.1 |
MS.gene042501.t1 | MTR_1g077600 | 51.899 | 79 | 33 | 1 | 82 | 155 | 17 | 95 | 2.58e-22 | 96.7 |
MS.gene042501.t1 | MTR_1g077600 | 51.899 | 79 | 33 | 1 | 82 | 155 | 17 | 95 | 2.90e-22 | 96.3 |
MS.gene042501.t1 | MTR_2g014060 | 59.375 | 64 | 26 | 0 | 91 | 154 | 13 | 76 | 3.28e-22 | 97.4 |
MS.gene042501.t1 | MTR_7g059400 | 38.760 | 129 | 66 | 2 | 91 | 217 | 62 | 179 | 4.20e-22 | 97.1 |
MS.gene042501.t1 | MTR_7g024670 | 69.231 | 52 | 16 | 0 | 104 | 155 | 78 | 129 | 2.40e-21 | 95.5 |
MS.gene042501.t1 | MTR_5g031440 | 65.455 | 55 | 19 | 0 | 99 | 153 | 39 | 93 | 2.44e-21 | 94.7 |
MS.gene042501.t1 | MTR_2g013370 | 67.857 | 56 | 17 | 1 | 103 | 158 | 46 | 100 | 2.94e-21 | 93.2 |
MS.gene042501.t1 | MTR_4g089095 | 66.071 | 56 | 18 | 1 | 103 | 158 | 50 | 104 | 3.78e-21 | 93.6 |
MS.gene042501.t1 | MTR_4g089095 | 66.071 | 56 | 18 | 1 | 103 | 158 | 16 | 70 | 4.60e-21 | 92.4 |
MS.gene042501.t1 | MTR_3g090430 | 67.308 | 52 | 17 | 0 | 105 | 156 | 53 | 104 | 5.09e-21 | 94.0 |
MS.gene042501.t1 | MTR_2g014170 | 69.388 | 49 | 15 | 0 | 103 | 151 | 45 | 93 | 7.83e-21 | 92.8 |
MS.gene042501.t1 | MTR_1g056810 | 67.308 | 52 | 17 | 0 | 105 | 156 | 14 | 65 | 9.37e-21 | 92.0 |
MS.gene042501.t1 | MTR_3g077750 | 58.065 | 62 | 25 | 1 | 93 | 153 | 50 | 111 | 2.92e-20 | 91.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042501.t1 | AT5G39660 | 37.097 | 372 | 176 | 15 | 40 | 393 | 77 | 408 | 1.66e-51 | 180 |
MS.gene042501.t1 | AT5G39660 | 37.097 | 372 | 176 | 15 | 40 | 393 | 77 | 408 | 1.66e-51 | 180 |
MS.gene042501.t1 | AT5G39660 | 37.097 | 372 | 176 | 15 | 40 | 393 | 77 | 408 | 1.66e-51 | 180 |
MS.gene042501.t1 | AT3G47500 | 31.546 | 485 | 234 | 15 | 3 | 426 | 1 | 448 | 7.79e-50 | 175 |
MS.gene042501.t1 | AT5G62430 | 42.424 | 198 | 65 | 5 | 82 | 277 | 33 | 183 | 1.72e-37 | 138 |
MS.gene042501.t1 | AT1G26790 | 45.143 | 175 | 88 | 5 | 1 | 169 | 5 | 177 | 1.75e-34 | 132 |
MS.gene042501.t1 | AT1G29160 | 81.667 | 60 | 11 | 0 | 97 | 156 | 56 | 115 | 8.23e-33 | 122 |
MS.gene042501.t1 | AT2G34140 | 64.198 | 81 | 29 | 0 | 97 | 177 | 52 | 132 | 1.44e-32 | 121 |
MS.gene042501.t1 | AT1G69570 | 65.823 | 79 | 27 | 0 | 91 | 169 | 120 | 198 | 4.01e-32 | 126 |
MS.gene042501.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 99 | 168 | 72 | 141 | 8.80e-25 | 104 |
MS.gene042501.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 99 | 168 | 72 | 141 | 1.11e-24 | 104 |
MS.gene042501.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 99 | 168 | 117 | 186 | 1.69e-24 | 104 |
MS.gene042501.t1 | AT5G60850 | 54.762 | 84 | 32 | 2 | 103 | 186 | 51 | 128 | 2.62e-24 | 102 |
MS.gene042501.t1 | AT5G60200 | 56.338 | 71 | 31 | 0 | 99 | 169 | 51 | 121 | 4.20e-24 | 100 |
MS.gene042501.t1 | AT1G51700 | 69.231 | 52 | 16 | 0 | 103 | 154 | 33 | 84 | 4.69e-24 | 99.4 |
MS.gene042501.t1 | AT4G24060 | 44.444 | 117 | 60 | 2 | 100 | 214 | 50 | 163 | 1.24e-23 | 101 |
MS.gene042501.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 1.61e-23 | 100 |
MS.gene042501.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 1.61e-23 | 100 |
MS.gene042501.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 69 | 127 | 2.02e-23 | 100 |
MS.gene042501.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 2.44e-23 | 100 |
MS.gene042501.t1 | AT2G28810 | 66.071 | 56 | 19 | 0 | 99 | 154 | 73 | 128 | 2.66e-23 | 100 |
MS.gene042501.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 69 | 127 | 3.35e-23 | 100 |
MS.gene042501.t1 | AT3G21270 | 69.811 | 53 | 16 | 0 | 103 | 155 | 29 | 81 | 3.54e-23 | 97.1 |
MS.gene042501.t1 | AT2G28810 | 66.071 | 56 | 19 | 0 | 99 | 154 | 90 | 145 | 4.66e-23 | 99.8 |
MS.gene042501.t1 | AT2G37590 | 63.793 | 58 | 21 | 0 | 99 | 156 | 85 | 142 | 5.41e-23 | 99.4 |
MS.gene042501.t1 | AT3G45610 | 52.857 | 70 | 33 | 0 | 99 | 168 | 36 | 105 | 5.79e-23 | 97.4 |
MS.gene042501.t1 | AT1G07640 | 69.091 | 55 | 16 | 1 | 103 | 156 | 21 | 75 | 1.15e-22 | 97.4 |
MS.gene042501.t1 | AT1G07640 | 69.091 | 55 | 16 | 1 | 103 | 156 | 77 | 131 | 1.60e-22 | 98.2 |
MS.gene042501.t1 | AT1G28310 | 68.519 | 54 | 17 | 0 | 103 | 156 | 27 | 80 | 2.10e-22 | 97.4 |
MS.gene042501.t1 | AT1G07640 | 69.091 | 55 | 16 | 1 | 103 | 156 | 85 | 139 | 2.11e-22 | 97.8 |
MS.gene042501.t1 | AT4G00940 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.18e-22 | 97.1 |
MS.gene042501.t1 | AT4G00940 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.18e-22 | 97.1 |
MS.gene042501.t1 | AT4G00940 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.18e-22 | 97.1 |
MS.gene042501.t1 | AT5G65590 | 70.370 | 54 | 16 | 0 | 103 | 156 | 41 | 94 | 2.43e-22 | 97.4 |
MS.gene042501.t1 | AT1G28310 | 68.519 | 54 | 17 | 0 | 103 | 156 | 51 | 104 | 3.08e-22 | 97.4 |
MS.gene042501.t1 | AT5G02460 | 44.898 | 98 | 53 | 1 | 99 | 195 | 91 | 188 | 4.12e-22 | 97.8 |
MS.gene042501.t1 | AT1G64620 | 65.385 | 52 | 18 | 0 | 100 | 151 | 46 | 97 | 5.61e-22 | 97.1 |
MS.gene042501.t1 | AT3G50410 | 70.588 | 51 | 15 | 0 | 105 | 155 | 32 | 82 | 5.79e-22 | 95.1 |
MS.gene042501.t1 | AT5G66940 | 50.000 | 80 | 33 | 1 | 90 | 169 | 26 | 98 | 7.73e-22 | 94.0 |
MS.gene042501.t1 | AT4G38000 | 66.071 | 56 | 18 | 1 | 102 | 156 | 40 | 95 | 8.10e-22 | 94.4 |
MS.gene042501.t1 | AT2G28510 | 66.071 | 56 | 19 | 0 | 105 | 160 | 50 | 105 | 1.53e-21 | 94.4 |
MS.gene042501.t1 | AT4G21050 | 40.800 | 125 | 59 | 3 | 76 | 198 | 4 | 115 | 2.83e-21 | 92.0 |
MS.gene042501.t1 | AT3G52440 | 65.385 | 52 | 18 | 0 | 105 | 156 | 27 | 78 | 1.16e-20 | 91.3 |
MS.gene042501.t1 | AT2G46590 | 62.264 | 53 | 20 | 0 | 98 | 150 | 63 | 115 | 1.21e-20 | 93.2 |
MS.gene042501.t1 | AT2G46590 | 62.264 | 53 | 20 | 0 | 98 | 150 | 75 | 127 | 1.42e-20 | 93.2 |
MS.gene042501.t1 | AT3G52440 | 65.385 | 52 | 18 | 0 | 105 | 156 | 46 | 97 | 1.47e-20 | 91.3 |
MS.gene042501.t1 | AT1G21340 | 66.000 | 50 | 17 | 0 | 105 | 154 | 40 | 89 | 3.25e-20 | 90.1 |
MS.gene042501.t1 | AT1G47655 | 70.213 | 47 | 14 | 0 | 105 | 151 | 31 | 77 | 3.52e-20 | 89.0 |
MS.gene042501.t1 | AT5G62940 | 57.812 | 64 | 26 | 1 | 91 | 153 | 60 | 123 | 8.53e-20 | 90.9 |
MS.gene042501.t1 | AT4G21040 | 63.462 | 52 | 19 | 0 | 105 | 156 | 27 | 78 | 6.44e-18 | 82.8 |
MS.gene042501.t1 | AT4G21080 | 57.895 | 57 | 24 | 0 | 105 | 161 | 27 | 83 | 2.17e-17 | 81.6 |
MS.gene042501.t1 | AT4G21030 | 59.091 | 44 | 18 | 0 | 105 | 148 | 23 | 66 | 2.61e-11 | 63.2 |
Find 117 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTCTTCATTAGGCTTCT+TGG | 0.163517 | 7.2:+20963155 | None:intergenic |
TTTGGGTGGCTCTCAGATTT+TGG | 0.205376 | 7.2:-20963121 | MS.gene042501:CDS |
GATCATGGTATTATGCTATT+TGG | 0.221788 | 7.2:-20965328 | MS.gene042501:CDS |
AACGAGACTGTATTGAAATT+TGG | 0.235896 | 7.2:-20963753 | MS.gene042501:CDS |
TGTCCAATTCCGGCCAATTC+TGG | 0.261036 | 7.2:-20965283 | MS.gene042501:CDS |
TACTTCATTTCCTTGATTGC+CGG | 0.302888 | 7.2:+20963593 | None:intergenic |
AAAATTATTATATGCTTTCC+TGG | 0.315121 | 7.2:+20963061 | None:intergenic |
TATCTCTATTGTGCTTTCCT+AGG | 0.318213 | 7.2:+20963289 | None:intergenic |
GTGGGCTTGGAATTTACTAT+TGG | 0.321756 | 7.2:+20964107 | None:intergenic |
GGTCCAGAATTGGCCGGAAT+TGG | 0.321957 | 7.2:+20965280 | None:intergenic |
CGTGTTATCTTCGGTGGGCT+TGG | 0.325634 | 7.2:+20964094 | None:intergenic |
GCTATTTGGTTGGAAGATTC+CGG | 0.345460 | 7.2:-20965314 | MS.gene042501:CDS |
GATTCGTAAAGAGGGGTATC+AGG | 0.378052 | 7.2:+20963729 | None:intergenic |
GCAAGAACTGCCAAAGGTAT+TGG | 0.383831 | 7.2:-20963938 | MS.gene042501:CDS |
AGAAGGAAAAGACGGTGTTT+TGG | 0.384688 | 7.2:-20963139 | MS.gene042501:CDS |
ACACCTATGTTGGCAATTCC+AGG | 0.386307 | 7.2:-20963435 | MS.gene042501:CDS |
TTATACCATGGGTCCAGAAT+TGG | 0.394530 | 7.2:+20965270 | None:intergenic |
TTTATCTTGATCCGTATTAC+CGG | 0.399758 | 7.2:+20964067 | None:intergenic |
GGTAGTACCCATGGAGAAAC+AGG | 0.400241 | 7.2:+20963534 | None:intergenic |
TTGGAATAATGTTGCTTCAA+TGG | 0.402306 | 7.2:-20963499 | MS.gene042501:CDS |
TTATTCCAACCTGGATTCAT+TGG | 0.406197 | 7.2:+20963513 | None:intergenic |
AGACAATTCTTCTGATTCAA+TGG | 0.409932 | 7.2:-20964162 | MS.gene042501:CDS |
TTGGCCGGAATTGGACATTC+CGG | 0.413804 | 7.2:+20965289 | None:intergenic |
CACCAGCAGTCCAATACCTT+TGG | 0.414239 | 7.2:+20963928 | None:intergenic |
CAGAACGCAATGCATCAAAT+TGG | 0.417701 | 7.2:-20963569 | MS.gene042501:CDS |
TCGTGGTTACTATAATTTGC+CGG | 0.419212 | 7.2:+20963841 | None:intergenic |
ACAAGTAACAGTTGCTGCTC+AGG | 0.422483 | 7.2:-20963327 | MS.gene042501:CDS |
ATCTCTATTGTGCTTTCCTA+GGG | 0.423915 | 7.2:+20963290 | None:intergenic |
GGACACTGAACAATCTTGTC+TGG | 0.427093 | 7.2:+20964032 | None:intergenic |
AACAGTTGCTGCTCAGGAAA+TGG | 0.428682 | 7.2:-20963321 | MS.gene042501:CDS |
CTATTGTGCTTTCCTAGGGT+TGG | 0.437965 | 7.2:+20963294 | None:intergenic |
TAAAACAGACAAGTGTGTTC+CGG | 0.446244 | 7.2:-20963247 | MS.gene042501:CDS |
CAGTCTCGAAAAGTCCTATC+CGG | 0.447133 | 7.2:-20963191 | MS.gene042501:CDS |
ACCGGTCTCCGTGTTATCTT+CGG | 0.448248 | 7.2:+20964085 | None:intergenic |
TTCCGATAGGTGCTGGGAGG+CGG | 0.450898 | 7.2:-20963890 | MS.gene042501:CDS |
AGAAATGTTCCGATAGGTGC+TGG | 0.459160 | 7.2:-20963897 | MS.gene042501:CDS |
ATGGTATTATGCTATTTGGT+TGG | 0.461686 | 7.2:-20965324 | MS.gene042501:CDS |
TGGTTGGAAGATTCCGGTGC+CGG | 0.462466 | 7.2:-20965308 | MS.gene042501:CDS |
ACAAGAGTCTATACCAGAAA+AGG | 0.468668 | 7.2:-20964132 | MS.gene042501:CDS |
TAACACGGAGACCGGTAATA+CGG | 0.475853 | 7.2:-20964078 | MS.gene042501:CDS |
GGTGCCGGAATGTCCAATTC+CGG | 0.477329 | 7.2:-20965293 | MS.gene042501:CDS |
GTGTTATCCTGTTTCTCCAT+GGG | 0.479488 | 7.2:-20963541 | MS.gene042501:CDS |
TACCCCTCTTTACGAATCAA+TGG | 0.484142 | 7.2:-20963724 | MS.gene042501:CDS |
AGGATACTTGCAGCAGTACA+AGG | 0.490268 | 7.2:-20964229 | MS.gene042501:CDS |
GTAACAAACACCGGCAATCA+AGG | 0.493046 | 7.2:-20963603 | MS.gene042501:CDS |
AGTGTTATCCTGTTTCTCCA+TGG | 0.495037 | 7.2:-20963542 | MS.gene042501:CDS |
GGAATTGGACATTCCGGCAC+CGG | 0.499395 | 7.2:+20965295 | None:intergenic |
TGCCAAAGGTATTGGACTGC+TGG | 0.503181 | 7.2:-20963930 | MS.gene042501:CDS |
ACCAAGAAGCCTAATGAAGA+AGG | 0.504636 | 7.2:-20963156 | MS.gene042501:CDS |
GTCTCCGTGTTATCTTCGGT+GGG | 0.507024 | 7.2:+20964089 | None:intergenic |
AGAAGAATTGTCTTGTTGCT+CGG | 0.510082 | 7.2:+20964172 | None:intergenic |
AGCACCTAGCCTCTCAATAC+CGG | 0.512664 | 7.2:-20963860 | MS.gene042501:CDS |
CGTGGTTGGAACTCCATTCG+TGG | 0.513560 | 7.2:+20963824 | None:intergenic |
GATTCCATTGATTCGTAAAG+AGG | 0.514441 | 7.2:+20963720 | None:intergenic |
TTCTCATGCTCATACAATCC+AGG | 0.520401 | 7.2:-20963079 | MS.gene042501:CDS |
CAATACAGTCTCGTTATCCA+TGG | 0.528405 | 7.2:+20963761 | None:intergenic |
TTCCGCCTCCCAGCACCTAT+CGG | 0.529039 | 7.2:+20963888 | None:intergenic |
GTAGTTTCTAGCCTCGTGGT+TGG | 0.531644 | 7.2:+20963810 | None:intergenic |
TATAATTTGCCGGTATTGAG+AGG | 0.538214 | 7.2:+20963851 | None:intergenic |
ACCGAAGATAACACGGAGAC+CGG | 0.539518 | 7.2:-20964086 | MS.gene042501:CDS |
GGAATTGCCAACATAGGTGT+TGG | 0.540068 | 7.2:+20963438 | None:intergenic |
GTGTCCGCGATGCAACAGTT+GGG | 0.540349 | 7.2:-20964015 | MS.gene042501:CDS |
GTTGTTGAAATAACAAAACT+TGG | 0.540457 | 7.2:+20963989 | None:intergenic |
ATTCCATTGATTCGTAAAGA+GGG | 0.545028 | 7.2:+20963721 | None:intergenic |
CGATCACCACCACACATCCA+TGG | 0.550071 | 7.2:-20963778 | MS.gene042501:CDS |
GGATTCATTGGTAGTACCCA+TGG | 0.554215 | 7.2:+20963525 | None:intergenic |
GTAGCTAATGTAGCCCGGAT+AGG | 0.554980 | 7.2:+20963177 | None:intergenic |
GGTCTCCGTGTTATCTTCGG+TGG | 0.555105 | 7.2:+20964088 | None:intergenic |
ATGAGAAATAGCTCCTGAGC+TGG | 0.556629 | 7.2:+20963095 | None:intergenic |
CATGGATGTGTGGTGGTGAT+CGG | 0.559985 | 7.2:+20963779 | None:intergenic |
GGAAATGGCTCACCAACCCT+AGG | 0.561749 | 7.2:-20963306 | MS.gene042501:CDS |
TCTCAGACTGAGAAGGATCA+TGG | 0.563095 | 7.2:-20965343 | MS.gene042501:CDS |
CAGTTCTTGCAGAAATGTCG+AGG | 0.563164 | 7.2:+20963951 | None:intergenic |
CGACTTCGGCATCCATGCAA+TGG | 0.568776 | 7.2:-20963464 | MS.gene042501:CDS |
TCTTGGTAGCTAATGTAGCC+CGG | 0.573000 | 7.2:+20963172 | None:intergenic |
AACTTGTAGCAGCATCACAT+TGG | 0.575411 | 7.2:-20963386 | MS.gene042501:CDS |
AGTGTCCGCGATGCAACAGT+TGG | 0.576096 | 7.2:-20964016 | MS.gene042501:CDS |
GGCAGCAGTTCATCCGACTT+CGG | 0.576744 | 7.2:-20963478 | MS.gene042501:CDS |
TCCGGCCAATTCTGGACCCA+TGG | 0.577153 | 7.2:-20965275 | MS.gene042501:intron |
CAAATTATAGTAACCACGAA+TGG | 0.580675 | 7.2:-20963837 | MS.gene042501:CDS |
GCAGCAACTGTTACTTGTAG+AGG | 0.584099 | 7.2:+20963332 | None:intergenic |
TGGGTACTACCAATGAATCC+AGG | 0.586175 | 7.2:-20963522 | MS.gene042501:CDS |
CATTGCATGGATGCCGAAGT+CGG | 0.595329 | 7.2:+20963465 | None:intergenic |
AGTCTCGAAAAGTCCTATCC+GGG | 0.597281 | 7.2:-20963190 | MS.gene042501:CDS |
ATTCCTGGAATTGCCAACAT+AGG | 0.597632 | 7.2:+20963432 | None:intergenic |
AGAGAGGAACCGTCCTTGTG+TGG | 0.598119 | 7.2:-20963633 | MS.gene042501:CDS |
TACTACCAATGAATCCAGGT+TGG | 0.601762 | 7.2:-20963518 | MS.gene042501:CDS |
CAGTTCTGTGCAACATAGAG+AGG | 0.603480 | 7.2:-20963649 | MS.gene042501:CDS |
CCTAATGAAGAAGGAAAAGA+CGG | 0.611817 | 7.2:-20963147 | MS.gene042501:CDS |
GAAATGTTCCGATAGGTGCT+GGG | 0.612734 | 7.2:-20963896 | MS.gene042501:CDS |
GGCGGCGAGAGGCAAAGTGA+TGG | 0.613227 | 7.2:+20963357 | None:intergenic |
GATGCTGCTACAAGTTGTAA+AGG | 0.617256 | 7.2:+20963393 | None:intergenic |
CAGTACAAGGAAAACAGAAG+TGG | 0.617838 | 7.2:-20964216 | MS.gene042501:CDS |
TTCCATTGATTCGTAAAGAG+GGG | 0.618009 | 7.2:+20963722 | None:intergenic |
GAAGCAACATTATTCCAACC+TGG | 0.621410 | 7.2:+20963504 | None:intergenic |
CAAAGGTATTGGACTGCTGG+TGG | 0.623552 | 7.2:-20963927 | MS.gene042501:CDS |
GAACATGTCTCAGACTGAGA+AGG | 0.623598 | 7.2:-20965350 | MS.gene042501:CDS |
CAAGCCCACCGAAGATAACA+CGG | 0.626181 | 7.2:-20964093 | MS.gene042501:CDS |
TTGTAGAGGAAGGCGGCGAG+AGG | 0.626239 | 7.2:+20963346 | None:intergenic |
TTTGCCGGTATTGAGAGGCT+AGG | 0.626885 | 7.2:+20963856 | None:intergenic |
ATGGTGTCCAACACCTATGT+TGG | 0.630522 | 7.2:-20963445 | MS.gene042501:CDS |
CAACTGTTACTTGTAGAGGA+AGG | 0.635921 | 7.2:+20963336 | None:intergenic |
GTTTGTAGTTTCTAGCCTCG+TGG | 0.637790 | 7.2:+20963806 | None:intergenic |
AGGTGTTGGACACCATTGCA+TGG | 0.641634 | 7.2:+20963452 | None:intergenic |
ACGATGAGAAATGTTCCGAT+AGG | 0.643759 | 7.2:-20963903 | MS.gene042501:CDS |
GGATCTTCTGTAACAAACAC+CGG | 0.647048 | 7.2:-20963612 | MS.gene042501:CDS |
CGTTATCCATGGATGTGTGG+TGG | 0.660626 | 7.2:+20963772 | None:intergenic |
ACCATGGGTCCAGAATTGGC+CGG | 0.660729 | 7.2:+20965274 | None:intergenic |
ATTTCTGCAAGAACTGCCAA+AGG | 0.665461 | 7.2:-20963944 | MS.gene042501:CDS |
ACAGAAGATCCACACAAGGA+CGG | 0.669016 | 7.2:+20963624 | None:intergenic |
GTAGCAGCATCACATTGGAG+TGG | 0.674545 | 7.2:-20963381 | MS.gene042501:CDS |
CTGTTACTTGTAGAGGAAGG+CGG | 0.676133 | 7.2:+20963339 | None:intergenic |
TCTCGTTATCCATGGATGTG+TGG | 0.680622 | 7.2:+20963769 | None:intergenic |
CGAATGGAGTTCCAACCACG+AGG | 0.695228 | 7.2:-20963821 | MS.gene042501:CDS |
GTGTCCCAACTGTTGCATCG+CGG | 0.715720 | 7.2:+20964011 | None:intergenic |
TGTTACAGAAGATCCACACA+AGG | 0.727736 | 7.2:+20963620 | None:intergenic |
ATGTTCCGATAGGTGCTGGG+AGG | 0.729596 | 7.2:-20963893 | MS.gene042501:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTGATTTTTGTAATTCT+TGG | - | chr7.2:20963726-20963745 | MS.gene042501:CDS | 15.0% |
!!! | TAATTCATGGTTTAAATTTT+AGG | - | chr7.2:20964171-20964190 | MS.gene042501:CDS | 15.0% |
!!! | TATTTTGTTTGTTTTCTTAT+GGG | - | chr7.2:20963285-20963304 | MS.gene042501:CDS | 15.0% |
!!! | TTATTTTGTTTGTTTTCTTA+TGG | - | chr7.2:20963284-20963303 | MS.gene042501:CDS | 15.0% |
!!! | ATTTTGTTTGTTTTCTTATG+GGG | - | chr7.2:20963286-20963305 | MS.gene042501:CDS | 20.0% |
!!! | TCTTTATGTTTTAATTGTGA+TGG | - | chr7.2:20963650-20963669 | MS.gene042501:CDS | 20.0% |
!!! | TTTTTTATGATGATTTCTCT+TGG | - | chr7.2:20963826-20963845 | MS.gene042501:CDS | 20.0% |
! | ATTCATCAATCATCAATCAT+TGG | + | chr7.2:20963600-20963619 | None:intergenic | 25.0% |
! | CAATATAATGTAAACAAAGG+CGG | - | chr7.2:20963552-20963571 | MS.gene042501:CDS | 25.0% |
! | CATTTGTACACTTAATTTCT+AGG | - | chr7.2:20963800-20963819 | MS.gene042501:CDS | 25.0% |
! | CTTAGTTTATCACTAATTCA+TGG | - | chr7.2:20964158-20964177 | MS.gene042501:CDS | 25.0% |
! | GACCAATATAATGTAAACAA+AGG | - | chr7.2:20963549-20963568 | MS.gene042501:CDS | 25.0% |
! | GTTGTTGAAATAACAAAACT+TGG | + | chr7.2:20964434-20964453 | None:intergenic | 25.0% |
! | TGTATGTTGCATATGAAAAT+GGG | - | chr7.2:20963240-20963259 | MS.gene042501:CDS | 25.0% |
! | TTGTATGTTGCATATGAAAA+TGG | - | chr7.2:20963239-20963258 | MS.gene042501:CDS | 25.0% |
! | TTGTTATGTTGTTATACCAT+GGG | + | chr7.2:20963164-20963183 | None:intergenic | 25.0% |
!!! | AGGATAATTTTGTTTCTTAG+TGG | - | chr7.2:20963372-20963391 | MS.gene042501:CDS | 25.0% |
!!! | AGTTGTAAAGGTATATTTTG+TGG | + | chr7.2:20965018-20965037 | None:intergenic | 25.0% |
!!! | ATAATTTTGTTTCTTAGTGG+AGG | - | chr7.2:20963375-20963394 | MS.gene042501:CDS | 25.0% |
AACGAGACTGTATTGAAATT+TGG | - | chr7.2:20964667-20964686 | MS.gene042501:intron | 30.0% | |
ACAACAAATTCTCACATAAC+AGG | + | chr7.2:20964059-20964078 | None:intergenic | 30.0% | |
AGACAATTCTTCTGATTCAA+TGG | - | chr7.2:20964258-20964277 | MS.gene042501:intron | 30.0% | |
CAAATTATAGTAACCACGAA+TGG | - | chr7.2:20964583-20964602 | MS.gene042501:intron | 30.0% | |
GACTAAAGATTGTTATAGTC+CGG | + | chr7.2:20963475-20963494 | None:intergenic | 30.0% | |
GATCATGGTATTATGCTATT+TGG | - | chr7.2:20963092-20963111 | MS.gene042501:CDS | 30.0% | |
TAGACAGAGAAATGAAATCA+AGG | + | chr7.2:20964107-20964126 | None:intergenic | 30.0% | |
TCATTTCTCTGTCTATTCTT+AGG | - | chr7.2:20964112-20964131 | MS.gene042501:CDS | 30.0% | |
TCCAATAGAAGTAAAAGATC+AGG | - | chr7.2:20963970-20963989 | MS.gene042501:CDS | 30.0% | |
TGTTATGCTTGCAAAATTTG+AGG | - | chr7.2:20964011-20964030 | MS.gene042501:CDS | 30.0% | |
TTTATCTTGATCCGTATTAC+CGG | + | chr7.2:20964356-20964375 | None:intergenic | 30.0% | |
! | AGGACACAAGTATAACTTTT+TGG | + | chr7.2:20964039-20964058 | None:intergenic | 30.0% |
! | ATGACTCTAAGAAAATGAAG+AGG | + | chr7.2:20963783-20963802 | None:intergenic | 30.0% |
! | ATGGTATTATGCTATTTGGT+TGG | - | chr7.2:20963096-20963115 | MS.gene042501:CDS | 30.0% |
! | CGCCTTTGTTTACATTATAT+TGG | + | chr7.2:20963554-20963573 | None:intergenic | 30.0% |
! | CTTGTTATGTTGTTATACCA+TGG | + | chr7.2:20963165-20963184 | None:intergenic | 30.0% |
! | TCCTGATCTTTTACTTCTAT+TGG | + | chr7.2:20963974-20963993 | None:intergenic | 30.0% |
! | TTGGAATAATGTTGCTTCAA+TGG | - | chr7.2:20964921-20964940 | MS.gene042501:intron | 30.0% |
!! | ATTCCATTGATTCGTAAAGA+GGG | + | chr7.2:20964702-20964721 | None:intergenic | 30.0% |
!! | ATTTTAATGAGCTTGAGGTA+AGG | - | chr7.2:20963418-20963437 | MS.gene042501:CDS | 30.0% |
!! | CAAAATCTTCTGAAGTTTGA+AGG | - | chr7.2:20963352-20963371 | MS.gene042501:CDS | 30.0% |
!! | GATTCATTTTAATGAGCTTG+AGG | - | chr7.2:20963413-20963432 | MS.gene042501:CDS | 30.0% |
!! | GTTCTAATTGTTTTTCGAAC+CGG | + | chr7.2:20965195-20965214 | None:intergenic | 30.0% |
!!! | GTTTTAATTGTGATGGAAGA+TGG | - | chr7.2:20963657-20963676 | MS.gene042501:CDS | 30.0% |
ACAAGAGTCTATACCAGAAA+AGG | - | chr7.2:20964288-20964307 | MS.gene042501:intron | 35.0% | |
ATCTCTATTGTGCTTTCCTA+GGG | + | chr7.2:20965133-20965152 | None:intergenic | 35.0% | |
CCTAATGAAGAAGGAAAAGA+CGG | - | chr7.2:20965273-20965292 | MS.gene042501:intron | 35.0% | |
GAAGAAAGACATAAGCTGAA+AGG | + | chr7.2:20963196-20963215 | None:intergenic | 35.0% | |
TAAAACAGACAAGTGTGTTC+CGG | - | chr7.2:20965173-20965192 | MS.gene042501:intron | 35.0% | |
TACTTCATTTCCTTGATTGC+CGG | + | chr7.2:20964830-20964849 | None:intergenic | 35.0% | |
TAGTAATCCAGAGTTTAGCT+GGG | + | chr7.2:20963513-20963532 | None:intergenic | 35.0% | |
TATCTCTATTGTGCTTTCCT+AGG | + | chr7.2:20965134-20965153 | None:intergenic | 35.0% | |
TGTAAACAAAGGCGGTATTT+AGG | - | chr7.2:20963560-20963579 | MS.gene042501:CDS | 35.0% | |
TGTTGCATATGAAAATGGGT+TGG | - | chr7.2:20963244-20963263 | MS.gene042501:CDS | 35.0% | |
TTATTCCAACCTGGATTCAT+TGG | + | chr7.2:20964910-20964929 | None:intergenic | 35.0% | |
TTGATGTGAACCAAAGGATT+TGG | - | chr7.2:20963750-20963769 | MS.gene042501:CDS | 35.0% | |
! | AAGATCAGGACTAGTGAAAT+AGG | - | chr7.2:20963984-20964003 | MS.gene042501:CDS | 35.0% |
! | AGAAGAATTGTCTTGTTGCT+CGG | + | chr7.2:20964251-20964270 | None:intergenic | 35.0% |
! | ATATTTTGTGGCTGAATTCC+TGG | + | chr7.2:20965006-20965025 | None:intergenic | 35.0% |
! | TATAATTTGCCGGTATTGAG+AGG | + | chr7.2:20964572-20964591 | None:intergenic | 35.0% |
! | TATGGGGTTGTTGAGATTTT+TGG | - | chr7.2:20963302-20963321 | MS.gene042501:CDS | 35.0% |
! | TCGTGGTTACTATAATTTGC+CGG | + | chr7.2:20964582-20964601 | None:intergenic | 35.0% |
!! | GATTCCATTGATTCGTAAAG+AGG | + | chr7.2:20964703-20964722 | None:intergenic | 35.0% |
!! | TTCCATTGATTCGTAAAGAG+GGG | + | chr7.2:20964701-20964720 | None:intergenic | 35.0% |
!!! | AATGGGTTGGACGTAAATTT+TGG | - | chr7.2:20963257-20963276 | MS.gene042501:CDS | 35.0% |
!!! | TTTACTATTGGCTCCTTTTC+TGG | + | chr7.2:20964304-20964323 | None:intergenic | 35.0% |
AACTTGTAGCAGCATCACAT+TGG | - | chr7.2:20965034-20965053 | MS.gene042501:intron | 40.0% | |
ACAAATTGTTCCGTAGAACC+CGG | - | chr7.2:20963441-20963460 | MS.gene042501:CDS | 40.0% | |
ACCAAGAAGCCTAATGAAGA+AGG | - | chr7.2:20965264-20965283 | MS.gene042501:intron | 40.0% | |
ACGATGAGAAATGTTCCGAT+AGG | - | chr7.2:20964517-20964536 | MS.gene042501:intron | 40.0% | |
AGGATCAAGACCAAATCCTT+TGG | + | chr7.2:20963763-20963782 | None:intergenic | 40.0% | |
ATTCCTGGAATTGCCAACAT+AGG | + | chr7.2:20964991-20965010 | None:intergenic | 40.0% | |
ATTTCTGCAAGAACTGCCAA+AGG | - | chr7.2:20964476-20964495 | MS.gene042501:intron | 40.0% | |
CAATACAGTCTCGTTATCCA+TGG | + | chr7.2:20964662-20964681 | None:intergenic | 40.0% | |
CAGAACGCAATGCATCAAAT+TGG | - | chr7.2:20964851-20964870 | MS.gene042501:intron | 40.0% | |
CAGTACAAGGAAAACAGAAG+TGG | - | chr7.2:20964204-20964223 | MS.gene042501:CDS | 40.0% | |
CTAGTAATCCAGAGTTTAGC+TGG | + | chr7.2:20963514-20963533 | None:intergenic | 40.0% | |
CTGGATTACTAGAGAGTAGA+GGG | - | chr7.2:20963522-20963541 | MS.gene042501:CDS | 40.0% | |
CTTGGATTGATGTGAACCAA+AGG | - | chr7.2:20963744-20963763 | MS.gene042501:CDS | 40.0% | |
GAAGCAACATTATTCCAACC+TGG | + | chr7.2:20964919-20964938 | None:intergenic | 40.0% | |
GATGCTGCTACAAGTTGTAA+AGG | + | chr7.2:20965030-20965049 | None:intergenic | 40.0% | |
GCTATTTGGTTGGAAGATTC+CGG | - | chr7.2:20963106-20963125 | MS.gene042501:CDS | 40.0% | |
GGATCTTCTGTAACAAACAC+CGG | - | chr7.2:20964808-20964827 | MS.gene042501:intron | 40.0% | |
GTGGGCTTGGAATTTACTAT+TGG | + | chr7.2:20964316-20964335 | None:intergenic | 40.0% | |
TACCCCTCTTTACGAATCAA+TGG | - | chr7.2:20964696-20964715 | MS.gene042501:intron | 40.0% | |
TACTACCAATGAATCCAGGT+TGG | - | chr7.2:20964902-20964921 | MS.gene042501:intron | 40.0% | |
TCCTTCTTCATTAGGCTTCT+TGG | + | chr7.2:20965268-20965287 | None:intergenic | 40.0% | |
TCTGGATTACTAGAGAGTAG+AGG | - | chr7.2:20963521-20963540 | MS.gene042501:CDS | 40.0% | |
TGTTACAGAAGATCCACACA+AGG | + | chr7.2:20964803-20964822 | None:intergenic | 40.0% | |
TTATACCATGGGTCCAGAAT+TGG | + | chr7.2:20963153-20963172 | None:intergenic | 40.0% | |
TTATAGTCCGGATTCAAACC+CGG | + | chr7.2:20963463-20963482 | None:intergenic | 40.0% | |
TTCTCATGCTCATACAATCC+AGG | - | chr7.2:20965341-20965360 | MS.gene042501:CDS | 40.0% | |
! | AGAAGGAAAAGACGGTGTTT+TGG | - | chr7.2:20965281-20965300 | MS.gene042501:CDS | 40.0% |
! | AGTGTTATCCTGTTTCTCCA+TGG | - | chr7.2:20964878-20964897 | MS.gene042501:intron | 40.0% |
! | CAACTGTTACTTGTAGAGGA+AGG | + | chr7.2:20965087-20965106 | None:intergenic | 40.0% |
! | CCGTCTTTTCCTTCTTCATT+AGG | + | chr7.2:20965276-20965295 | None:intergenic | 40.0% |
! | GAAGGAAAAGACGGTGTTTT+GGG | - | chr7.2:20965282-20965301 | MS.gene042501:CDS | 40.0% |
! | GTGTTATCCTGTTTCTCCAT+GGG | - | chr7.2:20964879-20964898 | MS.gene042501:intron | 40.0% |
! | TCTGAGATAAGCAGAAGTTG+AGG | - | chr7.2:20963935-20963954 | MS.gene042501:CDS | 40.0% |
! | TTGCATCAGCACTTCTTTTC+TGG | + | chr7.2:20964744-20964763 | None:intergenic | 40.0% |
!!! | GGGTTGTTGAGATTTTTGGT+TGG | - | chr7.2:20963306-20963325 | MS.gene042501:CDS | 40.0% |
AACAGTTGCTGCTCAGGAAA+TGG | - | chr7.2:20965099-20965118 | MS.gene042501:intron | 45.0% | |
ACAAGTAACAGTTGCTGCTC+AGG | - | chr7.2:20965093-20965112 | MS.gene042501:intron | 45.0% | |
ACACCTATGTTGGCAATTCC+AGG | - | chr7.2:20964985-20965004 | MS.gene042501:intron | 45.0% | |
ACAGAAGATCCACACAAGGA+CGG | + | chr7.2:20964799-20964818 | None:intergenic | 45.0% | |
AGAAATGTTCCGATAGGTGC+TGG | - | chr7.2:20964523-20964542 | MS.gene042501:intron | 45.0% | |
AGGATACTTGCAGCAGTACA+AGG | - | chr7.2:20964191-20964210 | MS.gene042501:CDS | 45.0% | |
AGTCTCGAAAAGTCCTATCC+GGG | - | chr7.2:20965230-20965249 | MS.gene042501:intron | 45.0% | |
ATGAGAAATAGCTCCTGAGC+TGG | + | chr7.2:20965328-20965347 | None:intergenic | 45.0% | |
ATGGTGTCCAACACCTATGT+TGG | - | chr7.2:20964975-20964994 | MS.gene042501:intron | 45.0% | |
CAAATTGTTCCGTAGAACCC+GGG | - | chr7.2:20963442-20963461 | MS.gene042501:CDS | 45.0% | |
CAGTCTCGAAAAGTCCTATC+CGG | - | chr7.2:20965229-20965248 | MS.gene042501:intron | 45.0% | |
CAGTTCTGTGCAACATAGAG+AGG | - | chr7.2:20964771-20964790 | MS.gene042501:intron | 45.0% | |
CAGTTCTTGCAGAAATGTCG+AGG | + | chr7.2:20964472-20964491 | None:intergenic | 45.0% | |
CTATTGTGCTTTCCTAGGGT+TGG | + | chr7.2:20965129-20965148 | None:intergenic | 45.0% | |
CTTACTTCCCAGCTAAACTC+TGG | - | chr7.2:20963503-20963522 | MS.gene042501:CDS | 45.0% | |
GAAATGTTCCGATAGGTGCT+GGG | - | chr7.2:20964524-20964543 | MS.gene042501:intron | 45.0% | |
GAACATGTCTCAGACTGAGA+AGG | - | chr7.2:20963070-20963089 | MS.gene042501:CDS | 45.0% | |
GGAATTGCCAACATAGGTGT+TGG | + | chr7.2:20964985-20965004 | None:intergenic | 45.0% | |
GGACACTGAACAATCTTGTC+TGG | + | chr7.2:20964391-20964410 | None:intergenic | 45.0% | |
GTAACAAACACCGGCAATCA+AGG | - | chr7.2:20964817-20964836 | MS.gene042501:intron | 45.0% | |
TAACACGGAGACCGGTAATA+CGG | - | chr7.2:20964342-20964361 | MS.gene042501:intron | 45.0% | |
TATAGTCCGGATTCAAACCC+GGG | + | chr7.2:20963462-20963481 | None:intergenic | 45.0% | |
TCTCAGACTGAGAAGGATCA+TGG | - | chr7.2:20963077-20963096 | MS.gene042501:CDS | 45.0% | |
TCTCGTTATCCATGGATGTG+TGG | + | chr7.2:20964654-20964673 | None:intergenic | 45.0% | |
TGGGTACTACCAATGAATCC+AGG | - | chr7.2:20964898-20964917 | MS.gene042501:intron | 45.0% | |
! | CTGTTACTTGTAGAGGAAGG+CGG | + | chr7.2:20965084-20965103 | None:intergenic | 45.0% |
! | GCAAGAACTGCCAAAGGTAT+TGG | - | chr7.2:20964482-20964501 | MS.gene042501:intron | 45.0% |
! | GCAGCAACTGTTACTTGTAG+AGG | + | chr7.2:20965091-20965110 | None:intergenic | 45.0% |
! | GGATTCATTGGTAGTACCCA+TGG | + | chr7.2:20964898-20964917 | None:intergenic | 45.0% |
! | TCTTGGTAGCTAATGTAGCC+CGG | + | chr7.2:20965251-20965270 | None:intergenic | 45.0% |
! | TTTGGGTGGCTCTCAGATTT+TGG | - | chr7.2:20965299-20965318 | MS.gene042501:CDS | 45.0% |
!! | GATTCGTAAAGAGGGGTATC+AGG | + | chr7.2:20964694-20964713 | None:intergenic | 45.0% |
!! | GTTTGTAGTTTCTAGCCTCG+TGG | + | chr7.2:20964617-20964636 | None:intergenic | 45.0% |
!!! | TGCTCGGTTTTTTCTGCACA+AGG | + | chr7.2:20964235-20964254 | None:intergenic | 45.0% |
ACCGAAGATAACACGGAGAC+CGG | - | chr7.2:20964334-20964353 | MS.gene042501:intron | 50.0% | |
ACCGGTCTCCGTGTTATCTT+CGG | + | chr7.2:20964338-20964357 | None:intergenic | 50.0% | |
AGCACCTAGCCTCTCAATAC+CGG | - | chr7.2:20964560-20964579 | MS.gene042501:intron | 50.0% | |
CAAGCCCACCGAAGATAACA+CGG | - | chr7.2:20964327-20964346 | MS.gene042501:intron | 50.0% | |
CACCAGCAGTCCAATACCTT+TGG | + | chr7.2:20964495-20964514 | None:intergenic | 50.0% | |
CATTGCATGGATGCCGAAGT+CGG | + | chr7.2:20964958-20964977 | None:intergenic | 50.0% | |
CGTTATCCATGGATGTGTGG+TGG | + | chr7.2:20964651-20964670 | None:intergenic | 50.0% | |
GGATTCAAACCCGGGTTCTA+CGG | + | chr7.2:20963454-20963473 | None:intergenic | 50.0% | |
GGTAGTACCCATGGAGAAAC+AGG | + | chr7.2:20964889-20964908 | None:intergenic | 50.0% | |
GTAGAACCCGGGTTTGAATC+CGG | - | chr7.2:20963453-20963472 | MS.gene042501:CDS | 50.0% | |
GTAGCAGCATCACATTGGAG+TGG | - | chr7.2:20965039-20965058 | MS.gene042501:intron | 50.0% | |
GTAGCTAATGTAGCCCGGAT+AGG | + | chr7.2:20965246-20965265 | None:intergenic | 50.0% | |
GTCTCCGTGTTATCTTCGGT+GGG | + | chr7.2:20964334-20964353 | None:intergenic | 50.0% | |
TGTCCAATTCCGGCCAATTC+TGG | - | chr7.2:20963137-20963156 | MS.gene042501:CDS | 50.0% | |
TTGGCCGGAATTGGACATTC+CGG | + | chr7.2:20963134-20963153 | None:intergenic | 50.0% | |
! | CATGGATGTGTGGTGGTGAT+CGG | + | chr7.2:20964644-20964663 | None:intergenic | 50.0% |
! | TTTGCCGGTATTGAGAGGCT+AGG | + | chr7.2:20964567-20964586 | None:intergenic | 50.0% |
!! | AGGTGTTGGACACCATTGCA+TGG | + | chr7.2:20964971-20964990 | None:intergenic | 50.0% |
!! | CAAAGGTATTGGACTGCTGG+TGG | - | chr7.2:20964493-20964512 | MS.gene042501:intron | 50.0% |
!! | CAGATTTTGGAAGCCAGCTC+AGG | - | chr7.2:20965312-20965331 | MS.gene042501:CDS | 50.0% |
!! | GGAAAAGACGGTGTTTTGGG+TGG | - | chr7.2:20965285-20965304 | MS.gene042501:CDS | 50.0% |
!! | GTAGTTTCTAGCCTCGTGGT+TGG | + | chr7.2:20964613-20964632 | None:intergenic | 50.0% |
!! | TGCCAAAGGTATTGGACTGC+TGG | - | chr7.2:20964490-20964509 | MS.gene042501:intron | 50.0% |
ACCATGGGTCCAGAATTGGC+CGG | + | chr7.2:20963149-20963168 | None:intergenic | 55.0% | |
AGAGAGGAACCGTCCTTGTG+TGG | - | chr7.2:20964787-20964806 | MS.gene042501:intron | 55.0% | |
AGTGTCCGCGATGCAACAGT+TGG | - | chr7.2:20964404-20964423 | MS.gene042501:intron | 55.0% | |
CGAATGGAGTTCCAACCACG+AGG | - | chr7.2:20964599-20964618 | MS.gene042501:intron | 55.0% | |
CGACTTCGGCATCCATGCAA+TGG | - | chr7.2:20964956-20964975 | MS.gene042501:intron | 55.0% | |
CGATCACCACCACACATCCA+TGG | - | chr7.2:20964642-20964661 | MS.gene042501:intron | 55.0% | |
CGTGGTTGGAACTCCATTCG+TGG | + | chr7.2:20964599-20964618 | None:intergenic | 55.0% | |
GGAAATGGCTCACCAACCCT+AGG | - | chr7.2:20965114-20965133 | MS.gene042501:intron | 55.0% | |
GGAATTGGACATTCCGGCAC+CGG | + | chr7.2:20963128-20963147 | None:intergenic | 55.0% | |
GGCAGCAGTTCATCCGACTT+CGG | - | chr7.2:20964942-20964961 | MS.gene042501:intron | 55.0% | |
GGTCCAGAATTGGCCGGAAT+TGG | + | chr7.2:20963143-20963162 | None:intergenic | 55.0% | |
GGTCTCCGTGTTATCTTCGG+TGG | + | chr7.2:20964335-20964354 | None:intergenic | 55.0% | |
GTGTCCCAACTGTTGCATCG+CGG | + | chr7.2:20964412-20964431 | None:intergenic | 55.0% | |
GTGTCCGCGATGCAACAGTT+GGG | - | chr7.2:20964405-20964424 | MS.gene042501:intron | 55.0% | |
TGGTTGGAAGATTCCGGTGC+CGG | - | chr7.2:20963112-20963131 | MS.gene042501:CDS | 55.0% | |
! | CGTGTTATCTTCGGTGGGCT+TGG | + | chr7.2:20964329-20964348 | None:intergenic | 55.0% |
! | GGTGCCGGAATGTCCAATTC+CGG | - | chr7.2:20963127-20963146 | MS.gene042501:CDS | 55.0% |
!! | ATGTTCCGATAGGTGCTGGG+AGG | - | chr7.2:20964527-20964546 | MS.gene042501:intron | 55.0% |
TCCGGCCAATTCTGGACCCA+TGG | - | chr7.2:20963145-20963164 | MS.gene042501:CDS | 60.0% | |
TTCCGCCTCCCAGCACCTAT+CGG | + | chr7.2:20964535-20964554 | None:intergenic | 60.0% | |
TTGTAGAGGAAGGCGGCGAG+AGG | + | chr7.2:20965077-20965096 | None:intergenic | 60.0% | |
!! | TTCCGATAGGTGCTGGGAGG+CGG | - | chr7.2:20964530-20964549 | MS.gene042501:intron | 60.0% |
GGCGGCGAGAGGCAAAGTGA+TGG | + | chr7.2:20965066-20965085 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 20963068 | 20965374 | 20963068 | ID=MS.gene042501 |
chr7.2 | mRNA | 20963068 | 20965374 | 20963068 | ID=MS.gene042501.t1;Parent=MS.gene042501 |
chr7.2 | exon | 20965276 | 20965374 | 20965276 | ID=MS.gene042501.t1.exon1;Parent=MS.gene042501.t1 |
chr7.2 | CDS | 20965276 | 20965374 | 20965276 | ID=cds.MS.gene042501.t1;Parent=MS.gene042501.t1 |
chr7.2 | exon | 20963068 | 20964249 | 20963068 | ID=MS.gene042501.t1.exon2;Parent=MS.gene042501.t1 |
chr7.2 | CDS | 20963068 | 20964249 | 20963068 | ID=cds.MS.gene042501.t1;Parent=MS.gene042501.t1 |
Gene Sequence |
Protein sequence |