AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042507

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042507.t1 MTR_7g086940 98.230 226 4 0 1 226 47 272 4.02e-166 459
MS.gene042507.t1 MTR_6g027390 46.591 264 89 7 1 226 51 300 6.15e-45 152
MS.gene042507.t1 MTR_7g025010 58.182 55 23 0 1 55 66 120 1.11e-16 78.6
MS.gene042507.t1 MTR_2g015000 44.776 67 37 0 155 221 341 407 7.05e-15 73.2
MS.gene042507.t1 MTR_2g015000 64.444 45 16 0 1 45 74 118 7.40e-15 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042507.t1 AT3G03660 48.485 231 94 6 1 222 52 266 8.84e-46 153
MS.gene042507.t1 AT3G03660 48.085 235 97 6 1 226 52 270 4.47e-45 152
MS.gene042507.t1 AT3G03660 45.349 258 91 7 1 222 52 295 1.54e-42 145
MS.gene042507.t1 AT3G03660 44.656 262 95 7 1 226 52 299 7.24e-42 145
MS.gene042507.t1 AT5G17810 41.767 249 93 9 2 222 41 265 8.37e-38 132
MS.gene042507.t1 AT5G17810 41.767 249 94 9 2 222 41 266 9.55e-38 132
MS.gene042507.t1 AT5G17810 41.767 249 94 9 2 222 41 266 9.55e-38 132
MS.gene042507.t1 AT2G33880 65.116 43 15 0 1 43 74 116 5.00e-14 70.5
MS.gene042507.t1 AT2G33880 44.643 56 31 0 165 220 323 378 1.38e-12 66.6
MS.gene042507.t1 AT2G33880 60.870 46 18 0 1 46 74 119 5.12e-14 70.5
MS.gene042507.t1 AT2G33880 46.429 56 30 0 165 220 323 378 1.11e-12 66.6
MS.gene042507.t1 AT5G45980 41.379 58 34 0 2 59 75 132 3.26e-12 65.1

Find 48 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGAGTGATAGTTGAAATT+AGG 0.234117 7.2:+20887164 None:intergenic
TCCTGTTTAAATGATTCTTC+TGG 0.279962 7.2:-20887326 MS.gene042507:CDS
AGAAAACTTCTTGAGAAATT+CGG 0.326558 7.2:-20887560 MS.gene042507:CDS
GAGATCTAGACCGGCGGTTT+TGG 0.333606 7.2:+20887504 None:intergenic
CAAGTGTGGCCTGCTGCATC+TGG 0.348372 7.2:+20887468 None:intergenic
AAGATGCCATGTTCATTTGT+AGG 0.357603 7.2:+20885372 None:intergenic
ACATGGTGAAAGCTACTTTC+TGG 0.379822 7.2:-20885334 MS.gene042507:intron
CCATGTTCATTTGTAGGAAC+TGG 0.385723 7.2:+20885378 None:intergenic
CTAGACATCAAAACAGTGTT+TGG 0.400410 7.2:-20885435 MS.gene042507:CDS
TCATGTGGTGGTGTTCTTAG+TGG 0.413935 7.2:-20887290 MS.gene042507:CDS
CCTGCTGCATCTGGCGTTGT+CGG 0.413984 7.2:+20887477 None:intergenic
ACCAGAAGAATCATTTAAAC+AGG 0.422447 7.2:+20887325 None:intergenic
CCGACAACGCCAGATGCAGC+AGG 0.426272 7.2:-20887477 MS.gene042507:CDS
TTAGCAACTGTGTTTATCAA+TGG 0.440279 7.2:-20885486 MS.gene042507:CDS
TAGCAACTGTGTTTATCAAT+GGG 0.442136 7.2:-20885485 MS.gene042507:CDS
AAGTGCAATTCCTTGTGATA+TGG 0.444028 7.2:-20887387 MS.gene042507:CDS
GGAGGTGCTAGTAATATAAC+AGG 0.444664 7.2:-20885510 MS.gene042507:CDS
TTGAAATTAGGAGAAAGAGA+AGG 0.504459 7.2:+20887176 None:intergenic
GTGATGTTAGTTCATTCCTC+TGG 0.509716 7.2:-20885405 MS.gene042507:CDS
CCTAATTTCAACTATCACTC+TGG 0.510567 7.2:-20887164 MS.gene042507:intron
TGAAATTAGGAGAAAGAGAA+GGG 0.522416 7.2:+20887177 None:intergenic
GTGATGCTAACGTCTTCTAC+TGG 0.530664 7.2:-20887529 MS.gene042507:CDS
GGTTCATCCTCTTCATCATG+TGG 0.536727 7.2:-20887305 MS.gene042507:CDS
AGTGGTCAACAAGGCATGGA+TGG 0.541797 7.2:-20887272 MS.gene042507:CDS
TGGTATTATTAAGGATATGG+AGG 0.551703 7.2:-20885528 MS.gene042507:intron
AGAATCATTTAAACAGGAGG+AGG 0.554300 7.2:+20887331 None:intergenic
CTTGAGAAATTCGGCAACGT+CGG 0.555714 7.2:-20887551 MS.gene042507:CDS
ATTTCTTTGCTGATCAAGTG+TGG 0.555910 7.2:+20887454 None:intergenic
AACACCACCACATGATGAAG+AGG 0.564994 7.2:+20887298 None:intergenic
GCTGCATCTGGCGTTGTCGG+CGG 0.572272 7.2:+20887480 None:intergenic
ATTGCAACAGAAATTCAAGC+AGG 0.580804 7.2:-20885462 MS.gene042507:CDS
GTCGGCGGCGAGATCTAGAC+CGG 0.586191 7.2:+20887495 None:intergenic
TGATCAGCAAAGAAATCAGA+TGG 0.591537 7.2:-20887447 MS.gene042507:CDS
TCTTAGTGGTCAACAAGGCA+TGG 0.594370 7.2:-20887276 MS.gene042507:CDS
CCAGTTCCTACAAATGAACA+TGG 0.595290 7.2:-20885378 MS.gene042507:CDS
AGAGAAGGGCACAAAAGTGA+TGG 0.605244 7.2:+20887191 None:intergenic
AGAAGAATCATTTAAACAGG+AGG 0.614423 7.2:+20887328 None:intergenic
TCTACTGGTTCCAAAACCGC+CGG 0.624539 7.2:-20887514 MS.gene042507:CDS
GGTTCAAACCAACCCAACCA+TGG 0.628192 7.2:-20887366 MS.gene042507:CDS
CCTCAGCAAGTTGTTAACGA+TGG 0.634528 7.2:-20887413 MS.gene042507:CDS
TCATCCTCTTCATCATGTGG+TGG 0.641364 7.2:-20887302 MS.gene042507:CDS
CCATCGTTAACAACTTGCTG+AGG 0.647740 7.2:+20887413 None:intergenic
TTGCAACAGAAATTCAAGCA+GGG 0.656089 7.2:-20885461 MS.gene042507:CDS
TTGGTTTGAACCATATCACA+AGG 0.660599 7.2:+20887377 None:intergenic
GGTGTTCTTAGTGGTCAACA+AGG 0.660710 7.2:-20887281 MS.gene042507:CDS
TGTAGGAACTGGCACACCAG+AGG 0.661943 7.2:+20885389 None:intergenic
TTGATTCAGAGCTTGCAACA+TGG 0.664561 7.2:-20885351 MS.gene042507:CDS
GGCGGCGAGATCTAGACCGG+CGG 0.697708 7.2:+20887498 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATTAAAAAAAAAATCTA+GGG + chr7.2:20885696-20885715 None:intergenic 10.0%
!! CAAAAAAATATATATTGAAT+AGG + chr7.2:20885314-20885333 None:intergenic 10.0%
!! TATGATTAAAAAAAAAATCT+AGG + chr7.2:20885697-20885716 None:intergenic 10.0%
!!! AAAAATTATTTTAAAATCCA+TGG - chr7.2:20884812-20884831 MS.gene042507:intron 10.0%
!!! ATGTTCTAATAATTTTATTT+TGG - chr7.2:20886357-20886376 MS.gene042507:intron 10.0%
!!! ATTTTATTTTGGTATTATTA+AGG - chr7.2:20886368-20886387 MS.gene042507:intron 10.0%
!!! GAATAATTTTATATAAATGT+TGG + chr7.2:20885781-20885800 None:intergenic 10.0%
!!! GTGATATTTTTTTTTTTTTT+TGG + chr7.2:20886974-20886993 None:intergenic 10.0%
!! AAATTTATCAAAATTGGATT+AGG + chr7.2:20884997-20885016 None:intergenic 15.0%
!! ATAAAAAATAAGATTAGAGA+AGG - chr7.2:20885102-20885121 MS.gene042507:intron 15.0%
!! GAATAATACAAAATTATTTG+TGG + chr7.2:20884894-20884913 None:intergenic 15.0%
!! TATTAATATTAAGAGTTCAA+CGG + chr7.2:20887271-20887290 None:intergenic 15.0%
!! TATTTAGCGAATTAAAATAT+AGG + chr7.2:20887484-20887503 None:intergenic 15.0%
!! TGCATATATATGAAAATTAT+AGG + chr7.2:20886190-20886209 None:intergenic 15.0%
!! TTAGTTAATTACAAATAAAC+TGG + chr7.2:20885912-20885931 None:intergenic 15.0%
!! TTTAAAAAAGTTCATGTTTA+TGG - chr7.2:20885452-20885471 MS.gene042507:CDS 15.0%
!!! AGTTTGAAATTTATCAAAAT+TGG + chr7.2:20885003-20885022 None:intergenic 15.0%
!!! ATATATAGCAGATTTTATTT+TGG + chr7.2:20885961-20885980 None:intergenic 15.0%
!!! TATATAGCAGATTTTATTTT+GGG + chr7.2:20885960-20885979 None:intergenic 15.0%
!!! TTGTAAATTTTCAATTAAGT+TGG + chr7.2:20885889-20885908 None:intergenic 15.0%
!!! TTTCTGATTTTATTATGAAT+TGG + chr7.2:20884844-20884863 None:intergenic 15.0%
!! AAAAAAGTGAGAGAATAAAA+AGG + chr7.2:20885624-20885643 None:intergenic 20.0%
!! AATTAGAATATGAAAACACA+TGG - chr7.2:20886828-20886847 MS.gene042507:intron 20.0%
!! ATCACAATTAACAATTTCAT+TGG - chr7.2:20885143-20885162 MS.gene042507:intron 20.0%
!! ATTTGACATGATTAAAATAC+AGG + chr7.2:20887446-20887465 None:intergenic 20.0%
!! CAAATTTGATTAACAATTCT+TGG + chr7.2:20886080-20886099 None:intergenic 20.0%
!! CAAGAATTGTTAATCAAATT+TGG - chr7.2:20886078-20886097 MS.gene042507:intron 20.0%
!! GAAATTGTTTATTATATGCA+TGG - chr7.2:20885028-20885047 MS.gene042507:intron 20.0%
!! TGATCATGATTATTAAACTT+TGG - chr7.2:20887565-20887584 MS.gene042507:CDS 20.0%
!!! ACATTAACTTCAAAATGTTT+TGG - chr7.2:20887378-20887397 MS.gene042507:CDS 20.0%
!!! ATATAGCAGATTTTATTTTG+GGG + chr7.2:20885959-20885978 None:intergenic 20.0%
!!! ATTATTAAACTTTGGTTTAC+AGG - chr7.2:20887573-20887592 MS.gene042507:CDS 20.0%
!!! ATTGTTTTGAAAATGTATGA+TGG + chr7.2:20886610-20886629 None:intergenic 20.0%
!!! ATTTTGATAGTTTCTTCTTT+TGG + chr7.2:20884324-20884343 None:intergenic 20.0%
!!! CATTAACTTCAAAATGTTTT+GGG - chr7.2:20887379-20887398 MS.gene042507:CDS 20.0%
!!! GAACTTGTAATTTTTTTTGA+CGG + chr7.2:20885811-20885830 None:intergenic 20.0%
!!! TAAAAAAAAAATCTAGGGTT+TGG + chr7.2:20885691-20885710 None:intergenic 20.0%
!!! TTAAAAAAAAAAAAGTGTCG+CGG + chr7.2:20885989-20886008 None:intergenic 20.0%
!!! TTTTACACTAACAATGTATA+TGG - chr7.2:20887245-20887264 MS.gene042507:CDS 20.0%
!!! TTTTCATATTCTAATTGATG+TGG + chr7.2:20886824-20886843 None:intergenic 20.0%
!!! TTTTGATAGTTTCTTCTTTT+GGG + chr7.2:20884323-20884342 None:intergenic 20.0%
!!! TTTTGGTATTATTAAGGATA+TGG - chr7.2:20886374-20886393 MS.gene042507:intron 20.0%
! ACAAAAAACTCCTTAATTAC+TGG + chr7.2:20887546-20887565 None:intergenic 25.0%
! ACTTTGGTAAAACTAGAATT+CGG + chr7.2:20885206-20885225 None:intergenic 25.0%
! AGAAAACTTCTTGAGAAATT+CGG - chr7.2:20884345-20884364 MS.gene042507:intron 25.0%
! ATGGTGAATAATTTACAAAG+AGG + chr7.2:20885742-20885761 None:intergenic 25.0%
! CAAAGTTTACATATGTGATA+TGG - chr7.2:20885220-20885239 MS.gene042507:intron 25.0%
! CATATCACATATGTAAACTT+TGG + chr7.2:20885222-20885241 None:intergenic 25.0%
! CATATCATTTCACTTGAATA+TGG - chr7.2:20887126-20887145 MS.gene042507:intron 25.0%
! CATATTCAAGTGAAATGATA+TGG + chr7.2:20887128-20887147 None:intergenic 25.0%
! TGGTGAATAATTTACAAAGA+GGG + chr7.2:20885741-20885760 None:intergenic 25.0%
! TGTTTATGGAATGATTGATT+AGG - chr7.2:20885466-20885485 MS.gene042507:CDS 25.0%
! TTTCTAATAAGTAACCCATA+AGG + chr7.2:20886695-20886714 None:intergenic 25.0%
!! ATCACTTTAACTTAGTTGTT+TGG - chr7.2:20886138-20886157 MS.gene042507:intron 25.0%
!! ATTTTCAGTTTCTTCTCAAA+TGG - chr7.2:20884659-20884678 MS.gene042507:intron 25.0%
!! ATTTTCTTTTCTCTCCTTAT+GGG - chr7.2:20886678-20886697 MS.gene042507:intron 25.0%
!! TTTTCAGTTTCTTCTCAAAT+GGG - chr7.2:20884660-20884679 MS.gene042507:intron 25.0%
!!! ATTAATGAACTTTTTCAAGC+AGG + chr7.2:20886120-20886139 None:intergenic 25.0%
!!! TTTGATAGTTTCTTCTTTTG+GGG + chr7.2:20884322-20884341 None:intergenic 25.0%
AAAATCTGTAGCATCAGATT+TGG + chr7.2:20885345-20885364 None:intergenic 30.0%
AAGTGAGAGAATAAAAAGGA+AGG + chr7.2:20885620-20885639 None:intergenic 30.0%
AATGATACATGAAAAGACGA+TGG - chr7.2:20887169-20887188 MS.gene042507:CDS 30.0%
ACATTGAACTAAAGCTAGTT+AGG - chr7.2:20887409-20887428 MS.gene042507:CDS 30.0%
ACCAGAAGAATCATTTAAAC+AGG + chr7.2:20884583-20884602 None:intergenic 30.0%
AGAAGAATCATTTAAACAGG+AGG + chr7.2:20884580-20884599 None:intergenic 30.0%
TAGCAACTGTGTTTATCAAT+GGG - chr7.2:20886420-20886439 MS.gene042507:intron 30.0%
TCCTGTTTAAATGATTCTTC+TGG - chr7.2:20884579-20884598 MS.gene042507:intron 30.0%
TGAAATTAGGAGAAAGAGAA+GGG + chr7.2:20884731-20884750 None:intergenic 30.0%
TGGTAAAAACTAGTGATGTA+TGG + chr7.2:20885761-20885780 None:intergenic 30.0%
TGGTATTATTAAGGATATGG+AGG - chr7.2:20886377-20886396 MS.gene042507:intron 30.0%
TGTTTGGTTATCTACGATAT+GGG - chr7.2:20886154-20886173 MS.gene042507:intron 30.0%
TTAGCAACTGTGTTTATCAA+TGG - chr7.2:20886419-20886438 MS.gene042507:intron 30.0%
TTGAAATTAGGAGAAAGAGA+AGG + chr7.2:20884732-20884751 None:intergenic 30.0%
TTGTATTTGACCAATGTGTA+TGG - chr7.2:20886332-20886351 MS.gene042507:intron 30.0%
TTGTTTGGTTATCTACGATA+TGG - chr7.2:20886153-20886172 MS.gene042507:intron 30.0%
! ATTAGAGAAGGCATATACAA+AGG - chr7.2:20885114-20885133 MS.gene042507:intron 30.0%
! ATTGACTTCTTAATGAAACG+TGG - chr7.2:20886210-20886229 MS.gene042507:intron 30.0%
! CATTTTCTTTTCTCTCCTTA+TGG - chr7.2:20886677-20886696 MS.gene042507:intron 30.0%
! TAGGCTTTGATGTAATATGT+TGG + chr7.2:20884978-20884997 None:intergenic 30.0%
!! TTGATAGTTTCTTCTTTTGG+GGG + chr7.2:20884321-20884340 None:intergenic 30.0%
!!! AAAGCCTAAGCTCTTTTTTT+CGG + chr7.2:20886906-20886925 None:intergenic 30.0%
!!! ACTTTTTTAAACCAAGTGCA+TGG + chr7.2:20885443-20885462 None:intergenic 30.0%
AAGATGCCATGTTCATTTGT+AGG + chr7.2:20886536-20886555 None:intergenic 35.0%
AAGTGCAATTCCTTGTGATA+TGG - chr7.2:20884518-20884537 MS.gene042507:intron 35.0%
AATAAATCCATCCATGCACT+TGG - chr7.2:20885429-20885448 MS.gene042507:CDS 35.0%
AGAATCATTTAAACAGGAGG+AGG + chr7.2:20884577-20884596 None:intergenic 35.0%
ATTGCAACAGAAATTCAAGC+AGG - chr7.2:20886443-20886462 MS.gene042507:intron 35.0%
ATTTCTTTGCTGATCAAGTG+TGG + chr7.2:20884454-20884473 None:intergenic 35.0%
CCAGAGTGATAGTTGAAATT+AGG + chr7.2:20884744-20884763 None:intergenic 35.0%
CCTAATTTCAACTATCACTC+TGG - chr7.2:20884741-20884760 MS.gene042507:intron 35.0%
CTAGACATCAAAACAGTGTT+TGG - chr7.2:20886470-20886489 MS.gene042507:intron 35.0%
GATTGATTAGGTTACAGGAT+GGG - chr7.2:20885478-20885497 MS.gene042507:CDS 35.0%
GGAATGATTGATTAGGTTAC+AGG - chr7.2:20885473-20885492 MS.gene042507:CDS 35.0%
GTAACCGAAAAAAAGAGCTT+AGG - chr7.2:20886899-20886918 MS.gene042507:intron 35.0%
TAGAACATCACCATACACAT+TGG + chr7.2:20886345-20886364 None:intergenic 35.0%
TCAACTATCACTCTGGTAAT+TGG - chr7.2:20884748-20884767 MS.gene042507:intron 35.0%
TCCTACTACTCCAGTAATTA+AGG - chr7.2:20887533-20887552 MS.gene042507:CDS 35.0%
TCCTTAATTACTGGAGTAGT+AGG + chr7.2:20887537-20887556 None:intergenic 35.0%
TGATCAGCAAAGAAATCAGA+TGG - chr7.2:20884458-20884477 MS.gene042507:intron 35.0%
TGATTGATTAGGTTACAGGA+TGG - chr7.2:20885477-20885496 MS.gene042507:CDS 35.0%
TGCATGAAAGTTGTTCTTTC+CGG - chr7.2:20885556-20885575 MS.gene042507:intron 35.0%
TTCATGCAACAATTCAAACG+CGG + chr7.2:20885544-20885563 None:intergenic 35.0%
TTGCAACAGAAATTCAAGCA+GGG - chr7.2:20886444-20886463 MS.gene042507:intron 35.0%
! AAAACATGAACGCTACTTTC+CGG - chr7.2:20885580-20885599 MS.gene042507:intron 35.0%
! AAGACGATGGTGTTTTTCAT+TGG - chr7.2:20887182-20887201 MS.gene042507:CDS 35.0%
! AAGTAGCGTTCATGTTTTTC+CGG + chr7.2:20885578-20885597 None:intergenic 35.0%
! TATCTACGATATGGGTTGAA+AGG - chr7.2:20886162-20886181 MS.gene042507:intron 35.0%
! TTGGGGTAAAGTCTGAAATT+TGG + chr7.2:20885942-20885961 None:intergenic 35.0%
! TTGGTTTGAACCATATCACA+AGG + chr7.2:20884531-20884550 None:intergenic 35.0%
! TTTTAAACCAAGTGCATGGA+TGG + chr7.2:20885439-20885458 None:intergenic 35.0%
!! TCTTCTCAAATGGGTTTTCT+TGG - chr7.2:20884669-20884688 MS.gene042507:intron 35.0%
!!! AACACTGTTTTGATGTCTAG+TGG + chr7.2:20886470-20886489 None:intergenic 35.0%
AACCACCAAAAACCATGGTT+GGG + chr7.2:20884554-20884573 None:intergenic 40.0%
AGGATGGGTACAGAATAAAG+TGG - chr7.2:20885493-20885512 MS.gene042507:CDS 40.0%
CCAGTTCCTACAAATGAACA+TGG - chr7.2:20886527-20886546 MS.gene042507:intron 40.0%
CCATGTTCATTTGTAGGAAC+TGG + chr7.2:20886530-20886549 None:intergenic 40.0%
GGATGGGTACAGAATAAAGT+GGG - chr7.2:20885494-20885513 MS.gene042507:CDS 40.0%
GTGATGTTAGTTCATTCCTC+TGG - chr7.2:20886500-20886519 MS.gene042507:intron 40.0%
TCGTAGTTGACACGTATGAT+TGG + chr7.2:20885251-20885270 None:intergenic 40.0%
TTGATGTGGCAATGCTTCAT+TGG + chr7.2:20886810-20886829 None:intergenic 40.0%
TTGATTCAGAGCTTGCAACA+TGG - chr7.2:20886554-20886573 MS.gene042507:intron 40.0%
! ACATGGTGAAAGCTACTTTC+TGG - chr7.2:20886571-20886590 MS.gene042507:intron 40.0%
! GAAAGCTACTTTCTGGTACT+TGG - chr7.2:20886578-20886597 MS.gene042507:intron 40.0%
! TTATGAATTGGAGTGCTCCA+TGG + chr7.2:20884832-20884851 None:intergenic 40.0%
!! GGAGGTGCTAGTAATATAAC+AGG - chr7.2:20886395-20886414 MS.gene042507:intron 40.0%
!!! GCATCTATTGATTTTGCACG+AGG + chr7.2:20885865-20885884 None:intergenic 40.0%
AACACCACCACATGATGAAG+AGG + chr7.2:20884610-20884629 None:intergenic 45.0%
AACGCGGAACTGTCAAATCA+AGG + chr7.2:20885528-20885547 None:intergenic 45.0%
ACCAAAAACCATGGTTGGGT+TGG + chr7.2:20884550-20884569 None:intergenic 45.0%
CCTCAGCAAGTTGTTAACGA+TGG - chr7.2:20884492-20884511 MS.gene042507:intron 45.0%
CTTGAGAAATTCGGCAACGT+CGG - chr7.2:20884354-20884373 MS.gene042507:intron 45.0%
GAACCACCAAAAACCATGGT+TGG + chr7.2:20884555-20884574 None:intergenic 45.0%
GGTGTTCTTAGTGGTCAACA+AGG - chr7.2:20884624-20884643 MS.gene042507:intron 45.0%
GGTTCATCCTCTTCATCATG+TGG - chr7.2:20884600-20884619 MS.gene042507:intron 45.0%
GTGATGCTAACGTCTTCTAC+TGG - chr7.2:20884376-20884395 MS.gene042507:intron 45.0%
TCATCCTCTTCATCATGTGG+TGG - chr7.2:20884603-20884622 MS.gene042507:intron 45.0%
TCTTAGTGGTCAACAAGGCA+TGG - chr7.2:20884629-20884648 MS.gene042507:intron 45.0%
! ACCAACCCAACCATGGTTTT+TGG - chr7.2:20884546-20884565 MS.gene042507:intron 45.0%
! AGAGAAGGGCACAAAAGTGA+TGG + chr7.2:20884717-20884736 None:intergenic 45.0%
! TCATGTGGTGGTGTTCTTAG+TGG - chr7.2:20884615-20884634 MS.gene042507:intron 45.0%
!! AACCCAACCATGGTTTTTGG+TGG - chr7.2:20884549-20884568 MS.gene042507:intron 45.0%
!! CCATCGTTAACAACTTGCTG+AGG + chr7.2:20884495-20884514 None:intergenic 45.0%
AGTGGTCAACAAGGCATGGA+TGG - chr7.2:20884633-20884652 MS.gene042507:intron 50.0%
GAAGGAACAGAAACTGCAGC+CGG + chr7.2:20885602-20885621 None:intergenic 50.0%
GGAGGAACCACCAAAAACCA+TGG + chr7.2:20884559-20884578 None:intergenic 50.0%
GGTTCAAACCAACCCAACCA+TGG - chr7.2:20884539-20884558 MS.gene042507:intron 50.0%
!! TCTACTGGTTCCAAAACCGC+CGG - chr7.2:20884391-20884410 MS.gene042507:intron 50.0%
TGTAGGAACTGGCACACCAG+AGG + chr7.2:20886519-20886538 None:intergenic 55.0%
! GAGATCTAGACCGGCGGTTT+TGG + chr7.2:20884404-20884423 None:intergenic 55.0%
CAAGTGTGGCCTGCTGCATC+TGG + chr7.2:20884440-20884459 None:intergenic 60.0%
CCTGCTGCATCTGGCGTTGT+CGG + chr7.2:20884431-20884450 None:intergenic 60.0%
CCGACAACGCCAGATGCAGC+AGG - chr7.2:20884428-20884447 MS.gene042507:intron 65.0%
GCTGCATCTGGCGTTGTCGG+CGG + chr7.2:20884428-20884447 None:intergenic 65.0%
GTCGGCGGCGAGATCTAGAC+CGG + chr7.2:20884413-20884432 None:intergenic 65.0%
GGCGGCGAGATCTAGACCGG+CGG + chr7.2:20884410-20884429 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 20884309 20887618 20884309 ID=MS.gene042507
chr7.2 mRNA 20884309 20887618 20884309 ID=MS.gene042507.t1;Parent=MS.gene042507
chr7.2 exon 20887165 20887618 20887165 ID=MS.gene042507.t1.exon1;Parent=MS.gene042507.t1
chr7.2 CDS 20887165 20887618 20887165 ID=cds.MS.gene042507.t1;Parent=MS.gene042507.t1
chr7.2 exon 20885335 20885537 20885335 ID=MS.gene042507.t1.exon2;Parent=MS.gene042507.t1
chr7.2 CDS 20885335 20885537 20885335 ID=cds.MS.gene042507.t1;Parent=MS.gene042507.t1
chr7.2 exon 20884309 20884332 20884309 ID=MS.gene042507.t1.exon3;Parent=MS.gene042507.t1
chr7.2 CDS 20884309 20884332 20884309 ID=cds.MS.gene042507.t1;Parent=MS.gene042507.t1
Gene Sequence

>MS.gene042507

ATGGTGAATCCCCCAAAAGAAGAAACTATCAAAATAAGAAAACTTCTTGAGAAATTCGGCAACGTCGGTGATGCTAACGTCTTCTACTGGTTCCAAAACCGCCGGTCTAGATCTCGCCGCCGACAACGCCAGATGCAGCAGGCCACACTTGATCAGCAAAGAAATCAGATGGCTATGATGCAGCCTCAGCAAGTTGTTAACGATGGTGCAAGTGCAATTCCTTGTGATATGGTTCAAACCAACCCAACCATGGTTTTTGGTGGTTCCTCCTCCTGTTTAAATGATTCTTCTGGTTCATCCTCTTCATCATGTGGTGGTGTTCTTAGTGGTCAACAAGGCATGGATGGTTTATTTTCAGTTTCTTCTCAAATGGGTTTTCTTGGAGTTGATCAAACTTTAGCTGCACCATCACTTTTGTGCCCTTCTCTTTCTCCTAATTTCAACTATCACTCTGGTAATTGGTTGCATGTCTTTTATTTATTTATTATTTATTTTATTACTAAAAAAATTATTTTAAAATCCATGGAGCACTCCAATTCATAATAAAATCAGAAAAGATTTGTTCAAAATCATTTAGAATCTCCACAAATAATTTTGTATTATTCAAAAAAGCTAACTTAAAATTATTTTTTCAATATTTTTTTTTATCAATACACAAGATATACTCCAACATATTACATCAAAGCCTAATCCAATTTTGATAAATTTCAAACTCACTAGAAATTGTTTATTATATGCATGGTTGTGTTTCTCAATTTTATTTTATTTTTTTTGAGATTTTTTTGTAAAAAAAATAAAAAATAAGATTAGAGAAGGCATATACAAAGGAAAGATATCACAATTAACAATTTCATTGGATATTTACAATGAAATTTACATATATCAAATCAATTGCCGAATTCTAGTTTTACCAAAGTTTACATATGTGATATGGAAGATCCAATCATACGTGTCAACTACGATCGATCATTTTTATGAGATGTGAGCATATGAATTTTTTCTCCTATTCAATATATATTTTTTTGCATAAATTCCAAATCTGATGCTACAGATTTTATTTTTTATCAATTATTATTAATGCATATTTGAATTCATAGTTGTTTTTTCAAAAAATATAAAAAATAAATCCATCCATGCACTTGGTTTAAAAAAGTTCATGTTTATGGAATGATTGATTAGGTTACAGGATGGGTACAGAATAAAGTGGGTAGCTTTTCCTTGATTTGACAGTTCCGCGTTTGAATTGTTGCATGAAAGTTGTTCTTTCCGGAAAAACATGAACGCTACTTTCCGGCTGCAGTTTCTGTTCCTTCCTTTTTATTCTCTCACTTTTTTCGACTTTCTTCAATAGTAATACTTCTGCTTCTGCACAAAAATTTCCAAACCCTAGATTTTTTTTTTAATCATAAATCATTTCATCTGATTGTTACCCTCTTTGTAAATTATTCACCATACATCACTAGTTTTTACCAACATTTATATAAAATTATTCAACTTTGCCGTCAAAAAAAATTACAAGTTCTTCTTATAATTAAAAAAGAGAGAGAGAAACACCTCGTGCAAAATCAATAGATGCACCAACTTAATTGAAAATTTACAACCAGTTTATTTGTAATTAACTAATCAAGAGCCAAATTTCAGACTTTACCCCAAAATAAAATCTGCTATATATGTTAACCGCGACACTTTTTTTTTTTTAACTCTTCAGTTCTCATAAGAAGTAAGTTTCAGCAATCTAAAGTTCGTTCGAGACATAAATAAAGTATTGCCAAGAATTGTTAATCAAATTTGGACTCACTTGAAACGTTCCTGCTTGAAAAAGTTCATTAATCACTTTAACTTAGTTGTTTGGTTATCTACGATATGGGTTGAAAGGAACCTATAATTTTCATATATATGCAATTGACTTCTTAATGAAACGTGGTCATCAAAGAAAACTTGCTTTGTTCATTACATGAGTAAATTGAGATTCAAAACGTTTGCTGAAACATTAATGAGATCAGCTTCTTTTATGCTTTAATATTTGTATTTGACCAATGTGTATGGTGATGTTCTAATAATTTTATTTTGGTATTATTAAGGATATGGAGGTGCTAGTAATATAACAGGATTAGCAACTGTGTTTATCAATGGGATTGCAACAGAAATTCAAGCAGGGCCACTAGACATCAAAACAGTGTTTGGAGAAGATGTGATGTTAGTTCATTCCTCTGGTGTGCCAGTTCCTACAAATGAACATGGCATCTTGATTCAGAGCTTGCAACATGGTGAAAGCTACTTTCTGGTACTTGGCACATACCATCATACATTTTCAAAACAATTGTTTCTATTCTAAATATTGTGTTGTCACATCTTTATCATTGTTCTTCATTTTCTTTTCTCTCCTTATGGGTTACTTATTAGAAAATTAATTCACACACATGTGCACATATGTGTACTACTTAAAAATAAAATTTAATTAGTATACTCTGTTGTGTACAATTATTTTACACATGTATCCAATGAAGCATTGCCACATCAATTAGAATATGAAAACACATGGATTTTCATATTCATTAATTGATATAGCAACAGATCACTTGATGCATGTGTAACCGAAAAAAAGAGCTTAGGCTTTTCTCTTTTCTGTTTTTGTTTCTTTTTCTTTTCTTCAGCTTTGTAACCAAAAAAAAAAAAAAATATCACTTGATGCATGTGTAAAATAATTTTACATTTACAAAACATATTAATTAAACTCTTAAAAATATCGATCAGATCATATGCACTATAAATGTAAAACAATTTTACACGTATATCAATAAAAATCTACTATTGTGCCATATCATTTCACTTGAATATGGTTATTTAAAAATTATTTGATAATGATACATGAAAAGACGATGGTGTTTTTCATTGGATATCAGTGTAAAATGTCTAAAAAATAAAGTGTAAAACTCTTTTACACTAACAATGTATATGGCCGTTGAACTCTTAATATTAATATTATATTTCTGTTTAAATTGTTCAATATGTTATTGTATTGAAACATTTTTTGTACAGAGTTATTGTATAGAAATATGTTATATGAAAACATTAACTTCAAAATGTTTTGGGAGTGAGAACATTGAACTAAAGCTAGTTAGGATTTATCTACTCCTGTATTTTAATCATGTCAAATAAAAAATAATCTACTCCTATATTTTAATTCGCTAAATATAATATTTTTCACTTACATTATTTTGAATTCCTACTACTCCAGTAATTAAGGAGTTTTTTGTGATCATGATTATTAAACTTTGGTTTACAGGTATCAAAGTCAGCACAAGTTTGA
Protein sequence

>MS.gene042507.t1

MVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQRQMQQATLDQQRNQMAMMQPQQVVNDGASAIPCDMVQTNPTMVFGGSSSCLNDSSGSSSSSCGGVLSGQQGMDGLFSVSSQMGFLGVDQTLAAPSLLCPSLSPNFNYHSGYGGASNITGLATVFINGIATEIQAGPLDIKTVFGEDVMLVHSSGVPVPTNEHGILIQSLQHGESYFLVSKSAQV