Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04252.t1 | XP_003590850.2 | 64.7 | 479 | 118 | 3 | 1 | 437 | 43 | 512 | 1.40E-162 | 582.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04252.t1 | Q9LUZ4 | 42.9 | 485 | 212 | 12 | 6 | 431 | 30 | 508 | 3.6e-87 | 323.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04252.t1 | G7I4W5 | 64.7 | 479 | 118 | 3 | 1 | 437 | 43 | 512 | 9.8e-163 | 582.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04252.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04252.t1 | MTR_1g075890 | 69.520 | 479 | 95 | 3 | 1 | 437 | 43 | 512 | 0.0 | 604 |
| MS.gene04252.t1 | MTR_3g464280 | 60.268 | 448 | 121 | 7 | 6 | 438 | 32 | 437 | 4.65e-162 | 466 |
| MS.gene04252.t1 | MTR_3g464260 | 57.263 | 475 | 80 | 8 | 1 | 437 | 35 | 424 | 4.09e-159 | 460 |
| MS.gene04252.t1 | MTR_5g071070 | 46.533 | 548 | 161 | 14 | 1 | 429 | 45 | 579 | 8.42e-135 | 404 |
| MS.gene04252.t1 | MTR_5g071070 | 45.490 | 510 | 146 | 14 | 39 | 429 | 1 | 497 | 1.10e-116 | 355 |
| MS.gene04252.t1 | MTR_5g082830 | 42.286 | 525 | 201 | 13 | 2 | 429 | 41 | 560 | 2.08e-116 | 356 |
| MS.gene04252.t1 | MTR_7g092070 | 40.466 | 472 | 179 | 12 | 2 | 383 | 58 | 517 | 3.09e-99 | 313 |
| MS.gene04252.t1 | MTR_3g464290 | 56.575 | 327 | 106 | 9 | 135 | 437 | 56 | 370 | 3.28e-94 | 292 |
| MS.gene04252.t1 | MTR_3g070880 | 37.500 | 488 | 151 | 14 | 2 | 429 | 21 | 414 | 2.59e-88 | 278 |
| MS.gene04252.t1 | MTR_3g029590 | 38.852 | 453 | 177 | 13 | 14 | 376 | 68 | 510 | 6.32e-84 | 273 |
| MS.gene04252.t1 | MTR_3g464270 | 48.684 | 304 | 104 | 5 | 178 | 438 | 8 | 302 | 5.72e-81 | 254 |
| MS.gene04252.t1 | MTR_1g050438 | 34.632 | 462 | 205 | 12 | 2 | 382 | 26 | 471 | 2.95e-72 | 238 |
| MS.gene04252.t1 | MTR_0728s0020 | 34.632 | 462 | 205 | 12 | 2 | 382 | 42 | 487 | 3.10e-72 | 239 |
| MS.gene04252.t1 | MTR_3g435590 | 38.776 | 343 | 143 | 8 | 16 | 299 | 57 | 391 | 3.70e-62 | 209 |
| MS.gene04252.t1 | MTR_3g435680 | 47.619 | 147 | 41 | 2 | 156 | 268 | 130 | 274 | 2.03e-40 | 149 |
| MS.gene04252.t1 | MTR_6g090380 | 43.750 | 144 | 56 | 4 | 116 | 243 | 33 | 167 | 2.86e-30 | 121 |
| MS.gene04252.t1 | MTR_8g102100 | 40.000 | 165 | 59 | 2 | 175 | 299 | 77 | 241 | 3.08e-30 | 120 |
| MS.gene04252.t1 | MTR_3g103960 | 55.056 | 89 | 30 | 2 | 156 | 243 | 39 | 118 | 6.65e-28 | 112 |
| MS.gene04252.t1 | MTR_2g090605 | 60.000 | 65 | 26 | 0 | 179 | 243 | 77 | 141 | 1.32e-25 | 108 |
| MS.gene04252.t1 | MTR_4g078660 | 55.072 | 69 | 31 | 0 | 175 | 243 | 56 | 124 | 8.84e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04252.t1 | AT5G58620 | 44.672 | 488 | 195 | 13 | 6 | 429 | 30 | 506 | 2.68e-113 | 346 |
| MS.gene04252.t1 | AT2G40140 | 45.413 | 436 | 166 | 10 | 5 | 401 | 48 | 450 | 1.10e-108 | 333 |
| MS.gene04252.t1 | AT2G40140 | 45.413 | 436 | 166 | 10 | 5 | 401 | 48 | 450 | 1.10e-108 | 333 |
| MS.gene04252.t1 | AT3G55980 | 44.244 | 443 | 162 | 15 | 2 | 401 | 41 | 441 | 2.61e-100 | 311 |
| MS.gene04252.t1 | AT3G55980 | 44.244 | 443 | 162 | 15 | 2 | 401 | 108 | 508 | 1.51e-99 | 311 |
| MS.gene04252.t1 | AT2G41900 | 40.225 | 445 | 184 | 11 | 7 | 382 | 64 | 495 | 3.49e-92 | 294 |
| MS.gene04252.t1 | AT5G12850 | 40.179 | 448 | 182 | 14 | 14 | 383 | 64 | 503 | 1.05e-91 | 292 |
| MS.gene04252.t1 | AT5G07500 | 57.831 | 83 | 35 | 0 | 161 | 243 | 34 | 116 | 8.18e-31 | 119 |
| MS.gene04252.t1 | AT4G29190 | 49.558 | 113 | 50 | 2 | 136 | 243 | 33 | 143 | 5.59e-30 | 119 |
| MS.gene04252.t1 | AT2G25900 | 62.319 | 69 | 26 | 0 | 175 | 243 | 86 | 154 | 3.61e-29 | 116 |
| MS.gene04252.t1 | AT2G25900 | 62.319 | 69 | 26 | 0 | 175 | 243 | 86 | 154 | 3.61e-29 | 116 |
| MS.gene04252.t1 | AT2G19810 | 57.500 | 80 | 34 | 0 | 164 | 243 | 63 | 142 | 2.75e-28 | 115 |
| MS.gene04252.t1 | AT1G03790 | 51.136 | 88 | 38 | 2 | 157 | 243 | 64 | 147 | 4.63e-25 | 106 |
| MS.gene04252.t1 | AT5G44260 | 52.273 | 88 | 37 | 2 | 157 | 243 | 42 | 125 | 1.44e-24 | 105 |
Find 120 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTCATTGTGCTGTTTC+TGG | 0.098846 | 3.4:+59382304 | MS.gene04252:CDS |
| CTTATGGTTTATGCCTTATT+TGG | 0.140310 | 3.4:+59382202 | MS.gene04252:CDS |
| CTTACCAATTCAAATGTTAT+TGG | 0.199131 | 3.4:+59383399 | MS.gene04252:CDS |
| TTCACAGATGTTGTTGAAAA+AGG | 0.211504 | 3.4:+59382097 | MS.gene04252:CDS |
| GGTGTCCTGTCTTATATTAT+TGG | 0.263939 | 3.4:+59382232 | MS.gene04252:CDS |
| TCCCTTCCTGAGATAAATAA+TGG | 0.281745 | 3.4:+59382586 | MS.gene04252:CDS |
| GACACCCTTGCTTCCAAATA+AGG | 0.305473 | 3.4:-59382215 | None:intergenic |
| GTGTCCCTTGCCCCGACTTT+CGG | 0.317518 | 3.4:+59382755 | MS.gene04252:CDS |
| CAAGGGCTTATTCTCATGAT+TGG | 0.318225 | 3.4:+59382662 | MS.gene04252:CDS |
| TATATAGTACAAATGAATTT+AGG | 0.321742 | 3.4:+59382611 | MS.gene04252:CDS |
| TCTCCTTCAAATAGGCTTGC+AGG | 0.328651 | 3.4:+59383267 | MS.gene04252:CDS |
| TGAAGAGAGGACACCTCTTA+TGG | 0.347611 | 3.4:+59382186 | MS.gene04252:CDS |
| GTCTTTCATCTCCTTCAAAT+AGG | 0.348830 | 3.4:+59383259 | MS.gene04252:CDS |
| GAGGGTTGGATCGAAGGAAA+TGG | 0.360734 | 3.4:+59382159 | MS.gene04252:CDS |
| CTTGTAGCAGCTCCACCATT+TGG | 0.370368 | 3.4:-59382516 | None:intergenic |
| TTTCTTGGCATCTGAAGAGC+TGG | 0.379566 | 3.4:-59383141 | None:intergenic |
| CATGATCCCTTCCGAAAGTC+GGG | 0.387890 | 3.4:-59382766 | None:intergenic |
| TGATCCAATAACATTTGAAT+TGG | 0.388637 | 3.4:-59383403 | None:intergenic |
| GTCATCTTCACTGGTTGAAC+CGG | 0.408011 | 3.4:-59382449 | None:intergenic |
| CTGTCTTATATTATTGGAAC+CGG | 0.409250 | 3.4:+59382238 | MS.gene04252:CDS |
| TGACACTGACAATATTCTTA+AGG | 0.414329 | 3.4:+59382483 | MS.gene04252:CDS |
| AAGGATAGCCCCAGAGTTGA+TGG | 0.415284 | 3.4:-59383371 | None:intergenic |
| AGGGTTGGATCGAAGGAAAT+GGG | 0.426387 | 3.4:+59382160 | MS.gene04252:CDS |
| TCAAAGTGAAGCCTTGTTCA+AGG | 0.431149 | 3.4:+59382644 | MS.gene04252:CDS |
| GACAATATTCTTAAGGAAGC+AGG | 0.436071 | 3.4:+59382490 | MS.gene04252:CDS |
| TTGTGCTACCTCACTTGCTA+TGG | 0.437333 | 3.4:+59383504 | MS.gene04252:CDS |
| TATATCCCATTATTTATCTC+AGG | 0.446350 | 3.4:-59382592 | None:intergenic |
| CCCTTCCTGAGATAAATAAT+GGG | 0.448156 | 3.4:+59382587 | MS.gene04252:CDS |
| CCGTCATTAACTTCCGCATA+AGG | 0.448177 | 3.4:-59383224 | None:intergenic |
| AATAAGGCATAAACCATAAG+AGG | 0.452174 | 3.4:-59382199 | None:intergenic |
| GAGTGTCCCTTTGTTCATCC+AGG | 0.455762 | 3.4:+59382688 | MS.gene04252:CDS |
| ACTCCTGCAAGCCTATTTGA+AGG | 0.456472 | 3.4:-59383270 | None:intergenic |
| TTCACCTAGTTCTTCTTCAT+CGG | 0.461261 | 3.4:+59382987 | MS.gene04252:CDS |
| TTATGGTATGGAAGGAGGGT+TGG | 0.464678 | 3.4:+59382145 | MS.gene04252:CDS |
| CAGGTATAATGATATTTCCT+TGG | 0.467024 | 3.4:-59382733 | None:intergenic |
| TGGAAGGAGGGTTGGATCGA+AGG | 0.473211 | 3.4:+59382153 | MS.gene04252:CDS |
| TTGCTTGATGCATCTGCAAA+TGG | 0.479762 | 3.4:+59382361 | MS.gene04252:CDS |
| CCGAGTATGCGGCTCAGATA+AGG | 0.487863 | 3.4:+59382276 | MS.gene04252:CDS |
| CGACCGTTGTATGCTTCTAC+CGG | 0.490079 | 3.4:+59382931 | MS.gene04252:CDS |
| AGAACACGAACCATCAACTC+TGG | 0.495455 | 3.4:+59383361 | MS.gene04252:CDS |
| CCCTTGCCCCGACTTTCGGA+AGG | 0.498336 | 3.4:+59382759 | MS.gene04252:CDS |
| CCCTTCCGAAAGTCGGGGCA+AGG | 0.501706 | 3.4:-59382760 | None:intergenic |
| CTGTTGTTGCGAATGGCAAC+CGG | 0.502079 | 3.4:+59382389 | MS.gene04252:CDS |
| AGGTGAAGGCAAAGCAGAAC+CGG | 0.502979 | 3.4:-59382950 | None:intergenic |
| TTCTTGGCATCTGAAGAGCT+GGG | 0.503638 | 3.4:-59383140 | None:intergenic |
| GCATGATCCCTTCCGAAAGT+CGG | 0.505621 | 3.4:-59382767 | None:intergenic |
| CCTTATCTGAGCCGCATACT+CGG | 0.510920 | 3.4:-59382276 | None:intergenic |
| GCAGCATCATTGCCTACGGC+TGG | 0.514430 | 3.4:+59383078 | MS.gene04252:CDS |
| AACATAAAAGTCATCTTCAC+TGG | 0.515000 | 3.4:-59382458 | None:intergenic |
| CAAAGTGAAGCCTTGTTCAA+GGG | 0.517860 | 3.4:+59382645 | MS.gene04252:CDS |
| TTTGAATTGGTAAGATCAGA+AGG | 0.519210 | 3.4:-59383390 | None:intergenic |
| TTATGCCTTATTTGGAAGCA+AGG | 0.525231 | 3.4:+59382210 | MS.gene04252:CDS |
| CTTGATAACCTCAGCAGAAG+TGG | 0.528251 | 3.4:-59382335 | None:intergenic |
| TAGGGTTATGGTATGGAAGG+AGG | 0.528404 | 3.4:+59382140 | MS.gene04252:CDS |
| TCAGGAAGGGATCGATCAAT+CGG | 0.528745 | 3.4:-59382574 | None:intergenic |
| GAACACGAACCATCAACTCT+GGG | 0.533588 | 3.4:+59383362 | MS.gene04252:CDS |
| AAAGTCGGGGCAAGGGACAC+AGG | 0.535861 | 3.4:-59382752 | None:intergenic |
| AGGGTTATGGTATGGAAGGA+GGG | 0.536148 | 3.4:+59382141 | MS.gene04252:CDS |
| TAAGGAAGCAGGTTTCCAAA+TGG | 0.540705 | 3.4:+59382501 | MS.gene04252:CDS |
| CCCATTATTTATCTCAGGAA+GGG | 0.543475 | 3.4:-59382587 | None:intergenic |
| ATGCAAAGCGCCGTGATCCA+AGG | 0.543626 | 3.4:+59382716 | MS.gene04252:CDS |
| AACATGATGTTGATGAGGTA+GGG | 0.544918 | 3.4:+59382122 | MS.gene04252:CDS |
| ATGTTGATGAGGTAGGGTTA+TGG | 0.554961 | 3.4:+59382128 | MS.gene04252:CDS |
| GCAGATGGAGTCAAAGGTGG+CGG | 0.558024 | 3.4:-59383057 | None:intergenic |
| TCCCATTATTTATCTCAGGA+AGG | 0.558706 | 3.4:-59382588 | None:intergenic |
| GGTGAATTCGAATATGATGT+AGG | 0.560129 | 3.4:-59382970 | None:intergenic |
| GGAAGCAGGTTTCCAAATGG+TGG | 0.560340 | 3.4:+59382504 | MS.gene04252:CDS |
| GGACTTAAAGCTTGCCACGC+TGG | 0.562068 | 3.4:-59383481 | None:intergenic |
| TCGGTGTCTAATAATATCTC+CGG | 0.564105 | 3.4:+59382430 | MS.gene04252:CDS |
| AATGATATTTCCTTGGATCA+CGG | 0.568390 | 3.4:-59382726 | None:intergenic |
| GTGGAGCTGCTACAAGATGC+AGG | 0.572446 | 3.4:+59382523 | MS.gene04252:CDS |
| GAACATGATGTTGATGAGGT+AGG | 0.574038 | 3.4:+59382121 | MS.gene04252:CDS |
| TTCGAATATGATGTAGGTGA+AGG | 0.575873 | 3.4:-59382964 | None:intergenic |
| CGGAAGGGATCATGCAGCAA+AGG | 0.575933 | 3.4:+59382775 | MS.gene04252:CDS |
| AGTGTCCCTTTGTTCATCCA+GGG | 0.576667 | 3.4:+59382689 | MS.gene04252:CDS |
| TATGCCTTATTTGGAAGCAA+GGG | 0.577363 | 3.4:+59382211 | MS.gene04252:CDS |
| TTGTTCTGCCACTTCTGCTG+AGG | 0.578024 | 3.4:+59382327 | MS.gene04252:CDS |
| CCTTGCCCCGACTTTCGGAA+GGG | 0.578605 | 3.4:+59382760 | MS.gene04252:CDS |
| ATCTGCAGCATCATTGCCTA+CGG | 0.579402 | 3.4:+59383074 | MS.gene04252:CDS |
| GCTCTCGCTCCGCTTTGTGA+TGG | 0.581388 | 3.4:-59383445 | None:intergenic |
| GTAGGCAATGATGCTGCAGA+TGG | 0.582817 | 3.4:-59383072 | None:intergenic |
| AGAAGAATCCATAGCAAGTG+AGG | 0.583861 | 3.4:-59383512 | None:intergenic |
| CGGTTCCAATAATATAAGAC+AGG | 0.589189 | 3.4:-59382237 | None:intergenic |
| GGCCACATGGTTCCAGCCGT+AGG | 0.590587 | 3.4:-59383090 | None:intergenic |
| GGTAGTTCTGTTGTTGCGAA+TGG | 0.592685 | 3.4:+59382382 | MS.gene04252:CDS |
| TCGGTTAACATCTACACGAC+CGG | 0.594422 | 3.4:-59382257 | None:intergenic |
| TAATCTTTCTTCTCAGTGCG+AGG | 0.594575 | 3.4:-59382550 | None:intergenic |
| CTTATGCGGAAGTTAATGAC+GGG | 0.596514 | 3.4:+59383225 | MS.gene04252:CDS |
| CCGAGTCTGAGTCGGCCACA+TGG | 0.598478 | 3.4:-59383103 | None:intergenic |
| AGGTAGGGTTATGGTATGGA+AGG | 0.598568 | 3.4:+59382137 | MS.gene04252:CDS |
| CCTTCCGAAAGTCGGGGCAA+GGG | 0.599933 | 3.4:-59382759 | None:intergenic |
| CCTTATGCGGAAGTTAATGA+CGG | 0.602861 | 3.4:+59383224 | MS.gene04252:CDS |
| AGACAATCAAGTCGCTACAC+CGG | 0.604044 | 3.4:-59382408 | None:intergenic |
| GATGAGGTAGGGTTATGGTA+TGG | 0.604921 | 3.4:+59382133 | MS.gene04252:CDS |
| GCGGAAGTTAATGACGGGAG+AGG | 0.608895 | 3.4:+59383230 | MS.gene04252:CDS |
| GTGTTCTGATGCGACTGCAT+TGG | 0.609359 | 3.4:-59383345 | None:intergenic |
| TAATCCGATGAAGAAGAACT+AGG | 0.616056 | 3.4:-59382991 | None:intergenic |
| AGGCGAACATGATGTTGATG+AGG | 0.616849 | 3.4:+59382117 | MS.gene04252:CDS |
| TGGATGAACAAAGGGACACT+CGG | 0.617153 | 3.4:-59382686 | None:intergenic |
| CCATGTGGCCGACTCAGACT+CGG | 0.618450 | 3.4:+59383103 | MS.gene04252:CDS |
| GTGTAGCGACTTGATTGTCT+CGG | 0.619922 | 3.4:+59382411 | MS.gene04252:CDS |
| TGATGCGACTGCATTGGTGT+CGG | 0.622152 | 3.4:-59383339 | None:intergenic |
| TGAGAATAAGCCCTTGAACA+AGG | 0.627841 | 3.4:-59382655 | None:intergenic |
| GCAGATTGTGTCAAATAAGA+CGG | 0.628556 | 3.4:-59383030 | None:intergenic |
| AACATGAAAATCTCCTTATG+CGG | 0.633353 | 3.4:+59383211 | MS.gene04252:CDS |
| GTGTCCCTTTGTTCATCCAG+GGG | 0.633464 | 3.4:+59382690 | MS.gene04252:CDS |
| GATGCTGCAGATGGAGTCAA+AGG | 0.643097 | 3.4:-59383063 | None:intergenic |
| GTATGAAGCCGAGTCTGAGT+CGG | 0.648321 | 3.4:-59383111 | None:intergenic |
| AGGAAATGGGATATGAAGAG+AGG | 0.649200 | 3.4:+59382173 | MS.gene04252:CDS |
| GTAGATGTTAACCGAGTATG+CGG | 0.658936 | 3.4:+59382265 | MS.gene04252:CDS |
| CTTTATTGAGCGCACCAGCG+TGG | 0.660917 | 3.4:+59383467 | MS.gene04252:CDS |
| ATGATCCCTTCCGAAAGTCG+GGG | 0.672164 | 3.4:-59382765 | None:intergenic |
| TGCCTACGGCTGGAACCATG+TGG | 0.681407 | 3.4:+59383088 | MS.gene04252:CDS |
| GCTGCAGATGGAGTCAAAGG+TGG | 0.696337 | 3.4:-59383060 | None:intergenic |
| ATGGCATCAACTCTTAATTG+TGG | 0.699766 | 3.4:-59383426 | None:intergenic |
| ATAGCAAGTGAGGTAGCACA+AGG | 0.724605 | 3.4:-59383502 | None:intergenic |
| GAGTTGATGCCATCACAAAG+CGG | 0.725373 | 3.4:+59383436 | MS.gene04252:CDS |
| AACACGAACCATCAACTCTG+GGG | 0.733137 | 3.4:+59383363 | MS.gene04252:CDS |
| GATGCTTGTGAATATGCACA+TGG | 0.757069 | 3.4:+59382799 | MS.gene04252:CDS |
| GAACCGGTAGAAGCATACAA+CGG | 0.780700 | 3.4:-59382934 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAGTACAAATGAATTT+AGG | + | chr3.4:59382611-59382630 | MS.gene04252:CDS | 15.0% |
| ! | CTTACCAATTCAAATGTTAT+TGG | + | chr3.4:59383399-59383418 | MS.gene04252:CDS | 25.0% |
| ! | TATATCCCATTATTTATCTC+AGG | - | chr3.4:59382595-59382614 | None:intergenic | 25.0% |
| ! | TGATCCAATAACATTTGAAT+TGG | - | chr3.4:59383406-59383425 | None:intergenic | 25.0% |
| !!! | CACATGGTATTTTTTAATGT+TGG | + | chr3.4:59382815-59382834 | MS.gene04252:intron | 25.0% |
| AACATAAAAGTCATCTTCAC+TGG | - | chr3.4:59382461-59382480 | None:intergenic | 30.0% | |
| AACATGAAAATCTCCTTATG+CGG | + | chr3.4:59383211-59383230 | MS.gene04252:CDS | 30.0% | |
| AATAAGGCATAAACCATAAG+AGG | - | chr3.4:59382202-59382221 | None:intergenic | 30.0% | |
| AATGATATTTCCTTGGATCA+CGG | - | chr3.4:59382729-59382748 | None:intergenic | 30.0% | |
| CAGGTATAATGATATTTCCT+TGG | - | chr3.4:59382736-59382755 | None:intergenic | 30.0% | |
| CTGTCTTATATTATTGGAAC+CGG | + | chr3.4:59382238-59382257 | MS.gene04252:CDS | 30.0% | |
| TGACACTGACAATATTCTTA+AGG | + | chr3.4:59382483-59382502 | MS.gene04252:CDS | 30.0% | |
| TTCACAGATGTTGTTGAAAA+AGG | + | chr3.4:59382097-59382116 | MS.gene04252:CDS | 30.0% | |
| TTTGAATTGGTAAGATCAGA+AGG | - | chr3.4:59383393-59383412 | None:intergenic | 30.0% | |
| ! | CTAACCTTGAAAACATTTTC+GGG | + | chr3.4:59383301-59383320 | MS.gene04252:CDS | 30.0% |
| ! | CTTATGGTTTATGCCTTATT+TGG | + | chr3.4:59382202-59382221 | MS.gene04252:CDS | 30.0% |
| ! | GCTAACCTTGAAAACATTTT+CGG | + | chr3.4:59383300-59383319 | MS.gene04252:CDS | 30.0% |
| !! | AAAATGTTTTCAAGGTTAGC+GGG | - | chr3.4:59383300-59383319 | None:intergenic | 30.0% |
| !! | GAAAATGTTTTCAAGGTTAG+CGG | - | chr3.4:59383301-59383320 | None:intergenic | 30.0% |
| ATGGCATCAACTCTTAATTG+TGG | - | chr3.4:59383429-59383448 | None:intergenic | 35.0% | |
| CCCATTATTTATCTCAGGAA+GGG | - | chr3.4:59382590-59382609 | None:intergenic | 35.0% | |
| CCCTTCCTGAGATAAATAAT+GGG | + | chr3.4:59382587-59382606 | MS.gene04252:CDS | 35.0% | |
| CGGTTCCAATAATATAAGAC+AGG | - | chr3.4:59382240-59382259 | None:intergenic | 35.0% | |
| GACAATATTCTTAAGGAAGC+AGG | + | chr3.4:59382490-59382509 | MS.gene04252:CDS | 35.0% | |
| GCAGATTGTGTCAAATAAGA+CGG | - | chr3.4:59383033-59383052 | None:intergenic | 35.0% | |
| GGTGAATTCGAATATGATGT+AGG | - | chr3.4:59382973-59382992 | None:intergenic | 35.0% | |
| GGTGTCCTGTCTTATATTAT+TGG | + | chr3.4:59382232-59382251 | MS.gene04252:CDS | 35.0% | |
| GTCTTTCATCTCCTTCAAAT+AGG | + | chr3.4:59383259-59383278 | MS.gene04252:CDS | 35.0% | |
| TAATCCGATGAAGAAGAACT+AGG | - | chr3.4:59382994-59383013 | None:intergenic | 35.0% | |
| TCCCATTATTTATCTCAGGA+AGG | - | chr3.4:59382591-59382610 | None:intergenic | 35.0% | |
| TCCCTTCCTGAGATAAATAA+TGG | + | chr3.4:59382586-59382605 | MS.gene04252:CDS | 35.0% | |
| TTCGAATATGATGTAGGTGA+AGG | - | chr3.4:59382967-59382986 | None:intergenic | 35.0% | |
| ! | AACATGATGTTGATGAGGTA+GGG | + | chr3.4:59382122-59382141 | MS.gene04252:CDS | 35.0% |
| ! | ATGACCCGAAAATGTTTTCA+AGG | - | chr3.4:59383308-59383327 | None:intergenic | 35.0% |
| ! | TCGGTGTCTAATAATATCTC+CGG | + | chr3.4:59382430-59382449 | MS.gene04252:CDS | 35.0% |
| ! | TTCACCTAGTTCTTCTTCAT+CGG | + | chr3.4:59382987-59383006 | MS.gene04252:CDS | 35.0% |
| !! | GCAGTTTTCAATCTGTTTCT+TGG | - | chr3.4:59383159-59383178 | None:intergenic | 35.0% |
| !! | TATGCCTTATTTGGAAGCAA+GGG | + | chr3.4:59382211-59382230 | MS.gene04252:CDS | 35.0% |
| !! | TTATGCCTTATTTGGAAGCA+AGG | + | chr3.4:59382210-59382229 | MS.gene04252:CDS | 35.0% |
| AGAAGAATCCATAGCAAGTG+AGG | - | chr3.4:59383515-59383534 | None:intergenic | 40.0% | |
| AGGAAATGGGATATGAAGAG+AGG | + | chr3.4:59382173-59382192 | MS.gene04252:CDS | 40.0% | |
| ATACAGAACAAGGCTTTGCA+CGG | + | chr3.4:59382852-59382871 | MS.gene04252:intron | 40.0% | |
| ATCCTGCTCAATACAGAACA+AGG | + | chr3.4:59382842-59382861 | MS.gene04252:intron | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | chr3.4:59382662-59382681 | MS.gene04252:CDS | 40.0% | |
| CCTTATGCGGAAGTTAATGA+CGG | + | chr3.4:59383224-59383243 | MS.gene04252:CDS | 40.0% | |
| CTTATGCGGAAGTTAATGAC+GGG | + | chr3.4:59383225-59383244 | MS.gene04252:CDS | 40.0% | |
| GATGCTTGTGAATATGCACA+TGG | + | chr3.4:59382799-59382818 | MS.gene04252:CDS | 40.0% | |
| GTAGATGTTAACCGAGTATG+CGG | + | chr3.4:59382265-59382284 | MS.gene04252:CDS | 40.0% | |
| TAAGGAAGCAGGTTTCCAAA+TGG | + | chr3.4:59382501-59382520 | MS.gene04252:CDS | 40.0% | |
| TAATCTTTCTTCTCAGTGCG+AGG | - | chr3.4:59382553-59382572 | None:intergenic | 40.0% | |
| TGAGAATAAGCCCTTGAACA+AGG | - | chr3.4:59382658-59382677 | None:intergenic | 40.0% | |
| TTGCTTGATGCATCTGCAAA+TGG | + | chr3.4:59382361-59382380 | MS.gene04252:CDS | 40.0% | |
| ! | ATGTTGATGAGGTAGGGTTA+TGG | + | chr3.4:59382128-59382147 | MS.gene04252:CDS | 40.0% |
| ! | ATTTTCCCCTGGATGAACAA+AGG | - | chr3.4:59382698-59382717 | None:intergenic | 40.0% |
| ! | GAACATGATGTTGATGAGGT+AGG | + | chr3.4:59382121-59382140 | MS.gene04252:CDS | 40.0% |
| ! | TTTTCCCCTGGATGAACAAA+GGG | - | chr3.4:59382697-59382716 | None:intergenic | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr3.4:59382645-59382664 | MS.gene04252:CDS | 40.0% |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr3.4:59382644-59382663 | MS.gene04252:CDS | 40.0% |
| AACACGAACCATCAACTCTG+GGG | + | chr3.4:59383363-59383382 | MS.gene04252:CDS | 45.0% | |
| ACTCCTGCAAGCCTATTTGA+AGG | - | chr3.4:59383273-59383292 | None:intergenic | 45.0% | |
| AGAACACGAACCATCAACTC+TGG | + | chr3.4:59383361-59383380 | MS.gene04252:CDS | 45.0% | |
| AGACAATCAAGTCGCTACAC+CGG | - | chr3.4:59382411-59382430 | None:intergenic | 45.0% | |
| AGGCGAACATGATGTTGATG+AGG | + | chr3.4:59382117-59382136 | MS.gene04252:CDS | 45.0% | |
| AGGGTTATGGTATGGAAGGA+GGG | + | chr3.4:59382141-59382160 | MS.gene04252:CDS | 45.0% | |
| AGGGTTGGATCGAAGGAAAT+GGG | + | chr3.4:59382160-59382179 | MS.gene04252:CDS | 45.0% | |
| AGGTAGGGTTATGGTATGGA+AGG | + | chr3.4:59382137-59382156 | MS.gene04252:CDS | 45.0% | |
| AGTGTCCCTTTGTTCATCCA+GGG | + | chr3.4:59382689-59382708 | MS.gene04252:CDS | 45.0% | |
| ATAGCAAGTGAGGTAGCACA+AGG | - | chr3.4:59383505-59383524 | None:intergenic | 45.0% | |
| ATCTGCAGCATCATTGCCTA+CGG | + | chr3.4:59383074-59383093 | MS.gene04252:CDS | 45.0% | |
| CCGTCATTAACTTCCGCATA+AGG | - | chr3.4:59383227-59383246 | None:intergenic | 45.0% | |
| GAACACGAACCATCAACTCT+GGG | + | chr3.4:59383362-59383381 | MS.gene04252:CDS | 45.0% | |
| GACACCCTTGCTTCCAAATA+AGG | - | chr3.4:59382218-59382237 | None:intergenic | 45.0% | |
| GATGAGGTAGGGTTATGGTA+TGG | + | chr3.4:59382133-59382152 | MS.gene04252:CDS | 45.0% | |
| GTGTAGCGACTTGATTGTCT+CGG | + | chr3.4:59382411-59382430 | MS.gene04252:CDS | 45.0% | |
| TAGGGTTATGGTATGGAAGG+AGG | + | chr3.4:59382140-59382159 | MS.gene04252:CDS | 45.0% | |
| TCAGGAAGGGATCGATCAAT+CGG | - | chr3.4:59382577-59382596 | None:intergenic | 45.0% | |
| TCGGTTAACATCTACACGAC+CGG | - | chr3.4:59382260-59382279 | None:intergenic | 45.0% | |
| TCTCCTTCAAATAGGCTTGC+AGG | + | chr3.4:59383267-59383286 | MS.gene04252:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | chr3.4:59382186-59382205 | MS.gene04252:CDS | 45.0% | |
| TGGATGAACAAAGGGACACT+CGG | - | chr3.4:59382689-59382708 | None:intergenic | 45.0% | |
| TTATGGTATGGAAGGAGGGT+TGG | + | chr3.4:59382145-59382164 | MS.gene04252:CDS | 45.0% | |
| TTCTTGGCATCTGAAGAGCT+GGG | - | chr3.4:59383143-59383162 | None:intergenic | 45.0% | |
| TTTCTTGGCATCTGAAGAGC+TGG | - | chr3.4:59383144-59383163 | None:intergenic | 45.0% | |
| ! | CTTGATAACCTCAGCAGAAG+TGG | - | chr3.4:59382338-59382357 | None:intergenic | 45.0% |
| ! | GAACCGGTAGAAGCATACAA+CGG | - | chr3.4:59382937-59382956 | None:intergenic | 45.0% |
| ! | GGTAGTTCTGTTGTTGCGAA+TGG | + | chr3.4:59382382-59382401 | MS.gene04252:CDS | 45.0% |
| ! | GTCATCTTCACTGGTTGAAC+CGG | - | chr3.4:59382452-59382471 | None:intergenic | 45.0% |
| ! | TTGTGCTACCTCACTTGCTA+TGG | + | chr3.4:59383504-59383523 | MS.gene04252:CDS | 45.0% |
| !! | AGCCTTGTTCTGTATTGAGC+AGG | - | chr3.4:59382847-59382866 | None:intergenic | 45.0% |
| !! | GAGTTGATGCCATCACAAAG+CGG | + | chr3.4:59383436-59383455 | MS.gene04252:CDS | 45.0% |
| !! | GCTCTTCATTGTGCTGTTTC+TGG | + | chr3.4:59382304-59382323 | MS.gene04252:CDS | 45.0% |
| AAGGATAGCCCCAGAGTTGA+TGG | - | chr3.4:59383374-59383393 | None:intergenic | 50.0% | |
| AGAACAAGGCTTTGCACGGA+TGG | + | chr3.4:59382856-59382875 | MS.gene04252:intron | 50.0% | |
| AGGCTTTGCACGGATGGAAT+CGG | + | chr3.4:59382862-59382881 | MS.gene04252:intron | 50.0% | |
| AGGTGAAGGCAAAGCAGAAC+CGG | - | chr3.4:59382953-59382972 | None:intergenic | 50.0% | |
| ATGATCCCTTCCGAAAGTCG+GGG | - | chr3.4:59382768-59382787 | None:intergenic | 50.0% | |
| CATGATCCCTTCCGAAAGTC+GGG | - | chr3.4:59382769-59382788 | None:intergenic | 50.0% | |
| CCTTATCTGAGCCGCATACT+CGG | - | chr3.4:59382279-59382298 | None:intergenic | 50.0% | |
| CGACCGTTGTATGCTTCTAC+CGG | + | chr3.4:59382931-59382950 | MS.gene04252:CDS | 50.0% | |
| CTGTTGTTGCGAATGGCAAC+CGG | + | chr3.4:59382389-59382408 | MS.gene04252:CDS | 50.0% | |
| CTTGTAGCAGCTCCACCATT+TGG | - | chr3.4:59382519-59382538 | None:intergenic | 50.0% | |
| GAGGGTTGGATCGAAGGAAA+TGG | + | chr3.4:59382159-59382178 | MS.gene04252:CDS | 50.0% | |
| GAGTGTCCCTTTGTTCATCC+AGG | + | chr3.4:59382688-59382707 | MS.gene04252:CDS | 50.0% | |
| GATGCTGCAGATGGAGTCAA+AGG | - | chr3.4:59383066-59383085 | None:intergenic | 50.0% | |
| GCATGATCCCTTCCGAAAGT+CGG | - | chr3.4:59382770-59382789 | None:intergenic | 50.0% | |
| GGAAGCAGGTTTCCAAATGG+TGG | + | chr3.4:59382504-59382523 | MS.gene04252:CDS | 50.0% | |
| GTAGGCAATGATGCTGCAGA+TGG | - | chr3.4:59383075-59383094 | None:intergenic | 50.0% | |
| GTATGAAGCCGAGTCTGAGT+CGG | - | chr3.4:59383114-59383133 | None:intergenic | 50.0% | |
| GTGTCCCTTTGTTCATCCAG+GGG | + | chr3.4:59382690-59382709 | MS.gene04252:CDS | 50.0% | |
| GTGTTCTGATGCGACTGCAT+TGG | - | chr3.4:59383348-59383367 | None:intergenic | 50.0% | |
| TACAACGGTCGAAGCTCATC+TGG | - | chr3.4:59382922-59382941 | None:intergenic | 50.0% | |
| ! | TGATGCGACTGCATTGGTGT+CGG | - | chr3.4:59383342-59383361 | None:intergenic | 50.0% |
| ! | TTGTTCTGCCACTTCTGCTG+AGG | + | chr3.4:59382327-59382346 | MS.gene04252:CDS | 50.0% |
| ATGGAATCGGGCGTACAAGG+AGG | + | chr3.4:59382875-59382894 | MS.gene04252:intron | 55.0% | |
| CCGAGTATGCGGCTCAGATA+AGG | + | chr3.4:59382276-59382295 | MS.gene04252:CDS | 55.0% | |
| CGGAAGGGATCATGCAGCAA+AGG | + | chr3.4:59382775-59382794 | MS.gene04252:CDS | 55.0% | |
| CTTTATTGAGCGCACCAGCG+TGG | + | chr3.4:59383467-59383486 | MS.gene04252:CDS | 55.0% | |
| GCAGATGGAGTCAAAGGTGG+CGG | - | chr3.4:59383060-59383079 | None:intergenic | 55.0% | |
| GCTGCAGATGGAGTCAAAGG+TGG | - | chr3.4:59383063-59383082 | None:intergenic | 55.0% | |
| GGACTTAAAGCTTGCCACGC+TGG | - | chr3.4:59383484-59383503 | None:intergenic | 55.0% | |
| GGCTTTGCACGGATGGAATC+GGG | + | chr3.4:59382863-59382882 | MS.gene04252:intron | 55.0% | |
| GTGGAGCTGCTACAAGATGC+AGG | + | chr3.4:59382523-59382542 | MS.gene04252:CDS | 55.0% | |
| TGGAAGGAGGGTTGGATCGA+AGG | + | chr3.4:59382153-59382172 | MS.gene04252:CDS | 55.0% | |
| TGGAATCGGGCGTACAAGGA+GGG | + | chr3.4:59382876-59382895 | MS.gene04252:intron | 55.0% | |
| ! | GCGGAAGTTAATGACGGGAG+AGG | + | chr3.4:59383230-59383249 | MS.gene04252:CDS | 55.0% |
| !! | ATGCAAAGCGCCGTGATCCA+AGG | + | chr3.4:59382716-59382735 | MS.gene04252:CDS | 55.0% |
| AAAGTCGGGGCAAGGGACAC+AGG | - | chr3.4:59382755-59382774 | None:intergenic | 60.0% | |
| CCTTCCGAAAGTCGGGGCAA+GGG | - | chr3.4:59382762-59382781 | None:intergenic | 60.0% | |
| CCTTGCCCCGACTTTCGGAA+GGG | + | chr3.4:59382760-59382779 | MS.gene04252:CDS | 60.0% | |
| CGGATGGAATCGGGCGTACA+AGG | + | chr3.4:59382872-59382891 | MS.gene04252:intron | 60.0% | |
| GCAGCATCATTGCCTACGGC+TGG | + | chr3.4:59383078-59383097 | MS.gene04252:CDS | 60.0% | |
| GCTCTCGCTCCGCTTTGTGA+TGG | - | chr3.4:59383448-59383467 | None:intergenic | 60.0% | |
| GTGTCCCTTGCCCCGACTTT+CGG | + | chr3.4:59382755-59382774 | MS.gene04252:CDS | 60.0% | |
| TGCCTACGGCTGGAACCATG+TGG | + | chr3.4:59383088-59383107 | MS.gene04252:CDS | 60.0% | |
| ! | CCATGTGGCCGACTCAGACT+CGG | + | chr3.4:59383103-59383122 | MS.gene04252:CDS | 60.0% |
| ! | CGGCGCTTTGCATTTTCCCC+TGG | - | chr3.4:59382709-59382728 | None:intergenic | 60.0% |
| CCCTTCCGAAAGTCGGGGCA+AGG | - | chr3.4:59382763-59382782 | None:intergenic | 65.0% | |
| CCCTTGCCCCGACTTTCGGA+AGG | + | chr3.4:59382759-59382778 | MS.gene04252:CDS | 65.0% | |
| CCGAGTCTGAGTCGGCCACA+TGG | - | chr3.4:59383106-59383125 | None:intergenic | 65.0% | |
| GGCCACATGGTTCCAGCCGT+AGG | - | chr3.4:59383093-59383112 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 59382091 | 59383536 | 59382091 | ID=MS.gene04252 |
| chr3.4 | mRNA | 59382091 | 59383536 | 59382091 | ID=MS.gene04252.t1;Parent=MS.gene04252 |
| chr3.4 | exon | 59382091 | 59382820 | 59382091 | ID=MS.gene04252.t1.exon1;Parent=MS.gene04252.t1 |
| chr3.4 | CDS | 59382091 | 59382820 | 59382091 | ID=cds.MS.gene04252.t1;Parent=MS.gene04252.t1 |
| chr3.4 | exon | 59382923 | 59383536 | 59382923 | ID=MS.gene04252.t1.exon2;Parent=MS.gene04252.t1 |
| chr3.4 | CDS | 59382923 | 59383536 | 59382923 | ID=cds.MS.gene04252.t1;Parent=MS.gene04252.t1 |
| Gene Sequence |
| Protein sequence |
