Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042572.t1 | XP_013442392.1 | 93.2 | 162 | 11 | 0 | 1 | 162 | 1 | 162 | 2.20E-77 | 298.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042572.t1 | A0A072TGE6 | 93.2 | 162 | 11 | 0 | 1 | 162 | 1 | 162 | 1.6e-77 | 298.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene042572.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042572.t1 | MTR_0191s0020 | 93.210 | 162 | 11 | 0 | 1 | 162 | 1 | 162 | 1.67e-111 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042572.t1 | AT5G05330 | 40.828 | 169 | 86 | 5 | 1 | 163 | 33 | 193 | 4.74e-29 | 107 |
| MS.gene042572.t1 | AT5G05330 | 37.278 | 169 | 84 | 6 | 1 | 163 | 33 | 185 | 1.68e-21 | 87.8 |
| MS.gene042572.t1 | AT5G05330 | 35.556 | 135 | 75 | 4 | 35 | 163 | 2 | 130 | 2.36e-16 | 73.2 |
| MS.gene042572.t1 | AT5G23420 | 29.586 | 169 | 79 | 7 | 3 | 133 | 13 | 179 | 6.87e-11 | 59.7 |
Find 40 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAATAGTATTCAATTT+TGG | 0.191442 | 6.3:-21306191 | MS.gene042572:CDS |
| CATCCTGTTTCAAAGCTTCT+TGG | 0.241698 | 6.3:+21307821 | None:intergenic |
| GATTCTTGATAAGGTTATTA+AGG | 0.268519 | 6.3:-21306249 | MS.gene042572:CDS |
| TTCATCAAACGTTGAATGTT+TGG | 0.271567 | 6.3:+21308912 | None:intergenic |
| AAGATTCTCTAAAGATCATT+TGG | 0.292429 | 6.3:+21306146 | None:intergenic |
| GAATAGATACCATTTGAAAA+AGG | 0.310273 | 6.3:+21309130 | None:intergenic |
| GTGAGGAATGTTACATAAAA+AGG | 0.338584 | 6.3:+21308865 | None:intergenic |
| TCATCAAACGTTGAATGTTT+GGG | 0.338840 | 6.3:+21308913 | None:intergenic |
| TGTTTCTCATGCTAGAGAAT+TGG | 0.360591 | 6.3:-21307854 | MS.gene042572:CDS |
| CTTTGAAACAGGATGCTATT+GGG | 0.383638 | 6.3:-21307813 | MS.gene042572:CDS |
| GGATGCTATTGGGATCATTA+AGG | 0.406234 | 6.3:-21307803 | MS.gene042572:intron |
| ACTGGTTGAGATTCTTGATA+AGG | 0.406697 | 6.3:-21306258 | MS.gene042572:CDS |
| AATGTTTGGGCGAGTTCGCT+TGG | 0.411938 | 6.3:+21308926 | None:intergenic |
| ATATTGAACTTGATAGGATA+GGG | 0.419391 | 6.3:-21308049 | MS.gene042572:CDS |
| ACTATAATATTGAACTTGAT+AGG | 0.429563 | 6.3:-21308055 | MS.gene042572:CDS |
| CCAACAAGATTCAATTCAAA+AGG | 0.430763 | 6.3:-21308965 | MS.gene042572:CDS |
| GCTTTGAAACAGGATGCTAT+TGG | 0.436484 | 6.3:-21307814 | MS.gene042572:CDS |
| GCACCAAGAAGCTTTGAAAC+AGG | 0.445728 | 6.3:-21307824 | MS.gene042572:CDS |
| AATATTGAACTTGATAGGAT+AGG | 0.445741 | 6.3:-21308050 | MS.gene042572:CDS |
| ATAGGATAGGGTTTGAAAAG+TGG | 0.454750 | 6.3:-21308037 | MS.gene042572:CDS |
| AGATTCTCTAAAGATCATTT+GGG | 0.462920 | 6.3:+21306147 | None:intergenic |
| AAAAGGCGATAAGGCGAAAT+GGG | 0.467083 | 6.3:+21308882 | None:intergenic |
| GATGTCTGTTGCTATTGCCT+TGG | 0.468902 | 6.3:-21309009 | MS.gene042572:CDS |
| ATGTTTGGGCGAGTTCGCTT+GGG | 0.478229 | 6.3:+21308927 | None:intergenic |
| GGAGAAGAAGAGTTAGCAAA+AGG | 0.489450 | 6.3:-21309193 | MS.gene042572:CDS |
| TCTCTAGCATGAGAAACAAA+TGG | 0.535184 | 6.3:+21307859 | None:intergenic |
| GAGAAGAAGAGTTAGCAAAA+GGG | 0.538496 | 6.3:-21309192 | MS.gene042572:CDS |
| CTTCATGAAGGGTCAAGACA+TGG | 0.546084 | 6.3:-21308081 | MS.gene042572:CDS |
| CGTCGTGCTCGTGCTCCCGA+TGG | 0.554065 | 6.3:-21309158 | MS.gene042572:CDS |
| GGCGATAAGGCGAAATGGGT+TGG | 0.554242 | 6.3:+21308886 | None:intergenic |
| TATCAGGGAAAGCTTCATGA+AGG | 0.569390 | 6.3:-21308093 | MS.gene042572:intron |
| ATTCAATTCAAAAGGTTACT+CGG | 0.576978 | 6.3:-21308957 | MS.gene042572:CDS |
| GGGAGCACGAGCACGACGAA+TGG | 0.580129 | 6.3:+21309163 | None:intergenic |
| ATCAATCACTGTTTATGGCA+CGG | 0.585902 | 6.3:-21309214 | None:intergenic |
| GTATGGAGCAAATTCACCAC+TGG | 0.600880 | 6.3:-21306276 | MS.gene042572:CDS |
| ACAATAATGCATATCAGCCA+AGG | 0.611858 | 6.3:+21308992 | None:intergenic |
| ATCAGGGAAAGCTTCATGAA+GGG | 0.645191 | 6.3:-21308092 | MS.gene042572:intron |
| TTATCAAGAATCTCAACCAG+TGG | 0.666090 | 6.3:+21306260 | None:intergenic |
| GTGTATGCAGTGAAACATGT+GGG | 0.704015 | 6.3:-21309031 | MS.gene042572:intron |
| TGTGTATGCAGTGAAACATG+TGG | 0.707973 | 6.3:-21309032 | MS.gene042572:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATCACATTAATAAT+AGG | + | chr6.3:21308020-21308039 | None:intergenic | 10.0% |
| !! | ATATCAAATACAAATATATT+TGG | - | chr6.3:21306617-21306636 | MS.gene042572:intron | 10.0% |
| !!! | ATTAAAATAGTATTCAATTT+TGG | - | chr6.3:21309163-21309182 | MS.gene042572:CDS | 10.0% |
| !!! | TATTTATTTTAGATAAAGTA+TGG | - | chr6.3:21309061-21309080 | MS.gene042572:intron | 10.0% |
| !! | AACAAAAAATAAGCTAAAAT+TGG | + | chr6.3:21307692-21307711 | None:intergenic | 15.0% |
| !! | ATATATATGGAAATAAAGTT+AGG | + | chr6.3:21307382-21307401 | None:intergenic | 15.0% |
| !! | TATATATGGAAATAAAGTTA+GGG | + | chr6.3:21307381-21307400 | None:intergenic | 15.0% |
| !!! | TGAATACTATTTTAATGAAT+AGG | + | chr6.3:21309159-21309178 | None:intergenic | 15.0% |
| !! | AAATTTGATCAAGATTGAAT+AGG | + | chr6.3:21307188-21307207 | None:intergenic | 20.0% |
| !! | AATCTAACAAATCTAATGAT+AGG | + | chr6.3:21308514-21308533 | None:intergenic | 20.0% |
| !! | ACTATAATATTGAACTTGAT+AGG | - | chr6.3:21307299-21307318 | MS.gene042572:intron | 20.0% |
| !! | ATAACATTTAACACTAAAGA+TGG | + | chr6.3:21306529-21306548 | None:intergenic | 20.0% |
| !! | ATTATACATTGTTGTATATG+AGG | - | chr6.3:21307627-21307646 | MS.gene042572:intron | 20.0% |
| !! | ATTTCATTATAACAAGTGAT+GGG | + | chr6.3:21309007-21309026 | None:intergenic | 20.0% |
| !! | GTTAATTGTAGTTGAAAATA+TGG | + | chr6.3:21306835-21306854 | None:intergenic | 20.0% |
| !! | GTTTGTATACAAGAAATTAT+CGG | - | chr6.3:21308406-21308425 | MS.gene042572:intron | 20.0% |
| !! | TACTTATGATCACATATATA+TGG | + | chr6.3:21307395-21307414 | None:intergenic | 20.0% |
| !! | TATATGTGATCATAAGTAAT+TGG | - | chr6.3:21307397-21307416 | MS.gene042572:intron | 20.0% |
| !! | TTATTAACTACCAAAATCAA+AGG | + | chr6.3:21308670-21308689 | None:intergenic | 20.0% |
| !!! | AATTTCAATTGTTTTCACTT+AGG | - | chr6.3:21307840-21307859 | MS.gene042572:CDS | 20.0% |
| !!! | ACTATATAGTTTTCATATCA+GGG | - | chr6.3:21307246-21307265 | MS.gene042572:intron | 20.0% |
| !!! | ATAGTGTTTCTTTTATATAC+AGG | - | chr6.3:21306874-21306893 | MS.gene042572:intron | 20.0% |
| !!! | ATTTTATTCCTAATTTCACT+TGG | - | chr6.3:21306778-21306797 | MS.gene042572:intron | 20.0% |
| !!! | ATTTTCAGGTTTGATTTTTT+TGG | - | chr6.3:21307204-21307223 | MS.gene042572:intron | 20.0% |
| !!! | CTTTGTGAAAATTTAGTTTA+AGG | + | chr6.3:21306755-21306774 | None:intergenic | 20.0% |
| !!! | TGATAAAGTTAGTTATTTTG+TGG | - | chr6.3:21307772-21307791 | MS.gene042572:intron | 20.0% |
| ! | AAAATGAAAGAAAGTGGAAA+AGG | + | chr6.3:21306261-21306280 | None:intergenic | 25.0% |
| ! | AAAGTGGAAAAATATGTCAA+AGG | - | chr6.3:21307333-21307352 | MS.gene042572:intron | 25.0% |
| ! | AAATTATATAGATCCAGTGT+TGG | - | chr6.3:21308279-21308298 | MS.gene042572:intron | 25.0% |
| ! | AATATTGAACTTGATAGGAT+AGG | - | chr6.3:21307304-21307323 | MS.gene042572:intron | 25.0% |
| ! | AATTATCGGAAAAAAAGTTG+AGG | - | chr6.3:21308420-21308439 | MS.gene042572:intron | 25.0% |
| ! | ACACTAAAAATGAAAGAAAG+TGG | + | chr6.3:21306267-21306286 | None:intergenic | 25.0% |
| ! | ACTAACTTTATCAATGACAT+TGG | + | chr6.3:21307765-21307784 | None:intergenic | 25.0% |
| ! | AGAAACACTATACATAACAA+AGG | + | chr6.3:21306865-21306884 | None:intergenic | 25.0% |
| ! | AGTTACAAATACAAATCACT+TGG | - | chr6.3:21306646-21306665 | MS.gene042572:intron | 25.0% |
| ! | ATATTGAACTTGATAGGATA+GGG | - | chr6.3:21307305-21307324 | MS.gene042572:intron | 25.0% |
| ! | ATGTAAGCATAAACATTTCA+AGG | + | chr6.3:21308163-21308182 | None:intergenic | 25.0% |
| ! | ATTCAATTCAAAAGGTTACT+CGG | - | chr6.3:21306397-21306416 | MS.gene042572:intron | 25.0% |
| ! | CATTTCATTATAACAAGTGA+TGG | + | chr6.3:21309008-21309027 | None:intergenic | 25.0% |
| ! | CTGAAAGTTGAAATATGATT+TGG | - | chr6.3:21308851-21308870 | MS.gene042572:intron | 25.0% |
| ! | GAAAGGACTATAAGTAATTT+AGG | - | chr6.3:21307107-21307126 | MS.gene042572:intron | 25.0% |
| ! | GAATAGATACCATTTGAAAA+AGG | + | chr6.3:21306227-21306246 | None:intergenic | 25.0% |
| ! | GATTCTTGATAAGGTTATTA+AGG | - | chr6.3:21309105-21309124 | MS.gene042572:intron | 25.0% |
| ! | TCACTATGAAAGAAATTGAA+AGG | - | chr6.3:21307090-21307109 | MS.gene042572:intron | 25.0% |
| ! | TCTTGTATACAAACTAAACT+CGG | + | chr6.3:21308400-21308419 | None:intergenic | 25.0% |
| ! | TGTAATTTCACAATTTCCAT+AGG | - | chr6.3:21307936-21307955 | MS.gene042572:intron | 25.0% |
| ! | TTCAAAAGTCAAGTGTAATT+AGG | - | chr6.3:21308249-21308268 | MS.gene042572:intron | 25.0% |
| ! | TTTCATTATAACAAGTGATG+GGG | + | chr6.3:21309006-21309025 | None:intergenic | 25.0% |
| ! | TTTGATTGTTCTCATTTCAT+TGG | + | chr6.3:21307912-21307931 | None:intergenic | 25.0% |
| !! | GACTATAAGTAATTTAGGAT+TGG | - | chr6.3:21307112-21307131 | MS.gene042572:intron | 25.0% |
| !! | GACTATATAGTTTTCATATC+AGG | - | chr6.3:21307245-21307264 | MS.gene042572:intron | 25.0% |
| !! | TCAATCTTGATCAAATTTTC+AGG | - | chr6.3:21307190-21307209 | MS.gene042572:intron | 25.0% |
| !! | TGTTTTCACTTAGGTATATA+AGG | - | chr6.3:21307849-21307868 | MS.gene042572:CDS | 25.0% |
| !!! | GTAATTTGTTGCAGTAATTT+AGG | - | chr6.3:21307011-21307030 | MS.gene042572:intron | 25.0% |
| !!! | TCAATTTTGGTTTGTTTGAA+TGG | - | chr6.3:21309176-21309195 | MS.gene042572:CDS | 25.0% |
| AAAGTTTCATCTTCAAGCAA+AGG | + | chr6.3:21308077-21308096 | None:intergenic | 30.0% | |
| AAATCAAAGGATAAGAAACG+AGG | + | chr6.3:21308657-21308676 | None:intergenic | 30.0% | |
| ACATTGAATATAGTTGTCTG+AGG | + | chr6.3:21308964-21308983 | None:intergenic | 30.0% | |
| AGCAAATATGATAGACGAAA+CGG | - | chr6.3:21308706-21308725 | MS.gene042572:intron | 30.0% | |
| ATACAAACTCATCTTTGACA+TGG | - | chr6.3:21309038-21309057 | MS.gene042572:intron | 30.0% | |
| ATGGAATGAAATGGATCATT+AGG | + | chr6.3:21308191-21308210 | None:intergenic | 30.0% | |
| CCAACAAGATTCAATTCAAA+AGG | - | chr6.3:21306389-21306408 | MS.gene042572:intron | 30.0% | |
| CTAATCACAATGGAATGAAA+TGG | + | chr6.3:21308200-21308219 | None:intergenic | 30.0% | |
| CTGTTTCATCTTTAATCCAA+TGG | - | chr6.3:21308891-21308910 | MS.gene042572:CDS | 30.0% | |
| CTTGTATACAAACTAAACTC+GGG | + | chr6.3:21308399-21308418 | None:intergenic | 30.0% | |
| GACTAGATATCTAATCACAA+TGG | + | chr6.3:21308210-21308229 | None:intergenic | 30.0% | |
| GATTGTAACCAAGTGAAATT+AGG | + | chr6.3:21306789-21306808 | None:intergenic | 30.0% | |
| GATTTCCTTCTAAACTGAAA+AGG | + | chr6.3:21308480-21308499 | None:intergenic | 30.0% | |
| GTCAAGTGTAATTAGGATTT+AGG | - | chr6.3:21308256-21308275 | MS.gene042572:intron | 30.0% | |
| GTGAGGAATGTTACATAAAA+AGG | + | chr6.3:21306492-21306511 | None:intergenic | 30.0% | |
| TAAGAATGGAGAAATTGTTG+TGG | - | chr6.3:21308303-21308322 | MS.gene042572:intron | 30.0% | |
| TATCTTATGTTCTTAGCCAT+TGG | + | chr6.3:21308910-21308929 | None:intergenic | 30.0% | |
| TCATCAAACGTTGAATGTTT+GGG | + | chr6.3:21306444-21306463 | None:intergenic | 30.0% | |
| TCGTTGAATTTGTAATCAGT+GGG | + | chr6.3:21306982-21307001 | None:intergenic | 30.0% | |
| TGTTACATAAAAAGGCGATA+AGG | + | chr6.3:21306484-21306503 | None:intergenic | 30.0% | |
| TTCAAAAGAATCCACCATAT+GGG | + | chr6.3:21308564-21308583 | None:intergenic | 30.0% | |
| TTCATCAAACGTTGAATGTT+TGG | + | chr6.3:21306445-21306464 | None:intergenic | 30.0% | |
| TTCATTATAACAAGTGATGG+GGG | + | chr6.3:21309005-21309024 | None:intergenic | 30.0% | |
| TTGAACCACAATCACTATAA+AGG | + | chr6.3:21308600-21308619 | None:intergenic | 30.0% | |
| TTGAACCTTTATAGTGATTG+TGG | - | chr6.3:21308592-21308611 | MS.gene042572:intron | 30.0% | |
| TTGAATAGGATCAAACAACA+TGG | + | chr6.3:21307174-21307193 | None:intergenic | 30.0% | |
| TTTCAGTTTAGAAGGAAATC+TGG | - | chr6.3:21308480-21308499 | MS.gene042572:intron | 30.0% | |
| ! | ATGTTATTTAATACGCAGTC+AGG | - | chr6.3:21306542-21306561 | MS.gene042572:intron | 30.0% |
| ! | CCTTTTGAATTGAATCTTGT+TGG | + | chr6.3:21306392-21306411 | None:intergenic | 30.0% |
| ! | CTTTTATATACAGGTGTTAG+TGG | - | chr6.3:21306883-21306902 | MS.gene042572:intron | 30.0% |
| ! | GGCATCTAAAATACACAAAT+CGG | + | chr6.3:21307147-21307166 | None:intergenic | 30.0% |
| ! | TGTTATTTAATACGCAGTCA+GGG | - | chr6.3:21306543-21306562 | MS.gene042572:intron | 30.0% |
| ! | TTGTTGCAGTAATTTAGGAT+TGG | - | chr6.3:21307016-21307035 | MS.gene042572:intron | 30.0% |
| !! | ATGGTTTGTTGTTCTGTTAT+TGG | - | chr6.3:21307053-21307072 | MS.gene042572:intron | 30.0% |
| !! | ATTTTGTGGAAGTACATTAG+AGG | - | chr6.3:21307786-21307805 | MS.gene042572:intron | 30.0% |
| !! | CGTTTCTTATCCTTTGATTT+TGG | - | chr6.3:21308657-21308676 | MS.gene042572:intron | 30.0% |
| !! | GTTAGTGGTTAGTTTGTTAA+GGG | - | chr6.3:21306898-21306917 | MS.gene042572:intron | 30.0% |
| !! | TGGTTTGTTGTTCTGTTATT+GGG | - | chr6.3:21307054-21307073 | MS.gene042572:intron | 30.0% |
| !! | TGTTAGTGGTTAGTTTGTTA+AGG | - | chr6.3:21306897-21306916 | MS.gene042572:intron | 30.0% |
| !! | TTAGTGGTTAGTTTGTTAAG+GGG | - | chr6.3:21306899-21306918 | MS.gene042572:intron | 30.0% |
| ACAATAATGCATATCAGCCA+AGG | + | chr6.3:21306365-21306384 | None:intergenic | 35.0% | |
| ACATCCAGTCCAAATCTATA+TGG | + | chr6.3:21308775-21308794 | None:intergenic | 35.0% | |
| ACTGGTTGAGATTCTTGATA+AGG | - | chr6.3:21309096-21309115 | MS.gene042572:intron | 35.0% | |
| AGGATCAAACAACATGGAAT+AGG | + | chr6.3:21307168-21307187 | None:intergenic | 35.0% | |
| ATAGGATAGGGTTTGAAAAG+TGG | - | chr6.3:21307317-21307336 | MS.gene042572:intron | 35.0% | |
| CTTCAAAAGAATCCACCATA+TGG | + | chr6.3:21308565-21308584 | None:intergenic | 35.0% | |
| CTTCTGTAACAGAGATGAAT+TGG | - | chr6.3:21308354-21308373 | MS.gene042572:intron | 35.0% | |
| GAGAAGAAGAGTTAGCAAAA+GGG | - | chr6.3:21306162-21306181 | MS.gene042572:CDS | 35.0% | |
| GGAGAAAATTGTCAACAAGA+TGG | - | chr6.3:21306920-21306939 | MS.gene042572:intron | 35.0% | |
| GTCGTTGAATTTGTAATCAG+TGG | + | chr6.3:21306983-21307002 | None:intergenic | 35.0% | |
| GTGGAAAAATATGTCAAAGG+AGG | - | chr6.3:21307336-21307355 | MS.gene042572:intron | 35.0% | |
| TATGGAAATAAAGTTAGGGC+AGG | + | chr6.3:21307377-21307396 | None:intergenic | 35.0% | |
| TCTCTAGCATGAGAAACAAA+TGG | + | chr6.3:21307498-21307517 | None:intergenic | 35.0% | |
| TGTTTCTCATGCTAGAGAAT+TGG | - | chr6.3:21307500-21307519 | MS.gene042572:intron | 35.0% | |
| TTATCAAGAATCTCAACCAG+TGG | + | chr6.3:21309097-21309116 | None:intergenic | 35.0% | |
| TTTGTAATCAGTGGGAATTG+AGG | + | chr6.3:21306974-21306993 | None:intergenic | 35.0% | |
| ! | AATTGAGGCATTAAACGAGA+AGG | + | chr6.3:21306959-21306978 | None:intergenic | 35.0% |
| ! | ATATAGATTTGGACTGGATG+TGG | - | chr6.3:21308774-21308793 | MS.gene042572:intron | 35.0% |
| ! | ATTGGAGTGTTTGACAACTA+TGG | - | chr6.3:21307034-21307053 | MS.gene042572:intron | 35.0% |
| ! | CATAATCTCCTTTTCTCTTC+AGG | - | chr6.3:21307464-21307483 | MS.gene042572:intron | 35.0% |
| ! | TCATTATAACAAGTGATGGG+GGG | + | chr6.3:21309004-21309023 | None:intergenic | 35.0% |
| !! | CTTTGAAACAGGATGCTATT+GGG | - | chr6.3:21307541-21307560 | MS.gene042572:intron | 35.0% |
| !! | TTTGAAAAAGGCACTTCCAT+CGG | + | chr6.3:21306215-21306234 | None:intergenic | 35.0% |
| !!! | ATGGAAGTGCCTTTTTCAAA+TGG | - | chr6.3:21306215-21306234 | MS.gene042572:CDS | 35.0% |
| !!! | TGAATATCTAGCTTTTGCTG+TGG | - | chr6.3:21308331-21308350 | MS.gene042572:intron | 35.0% |
| AAAAAGGCGATAAGGCGAAA+TGG | + | chr6.3:21306476-21306495 | None:intergenic | 40.0% | |
| AAAAGGCGATAAGGCGAAAT+GGG | + | chr6.3:21306475-21306494 | None:intergenic | 40.0% | |
| AAAGGATAAGAAACGAGGCA+AGG | + | chr6.3:21308652-21308671 | None:intergenic | 40.0% | |
| AGGTAGCACAATAACACCTA+TGG | + | chr6.3:21307955-21307974 | None:intergenic | 40.0% | |
| ATCAGGGAAAGCTTCATGAA+GGG | - | chr6.3:21307262-21307281 | MS.gene042572:intron | 40.0% | |
| ATTCACGCAGTCAAGACATT+TGG | - | chr6.3:21306577-21306596 | MS.gene042572:intron | 40.0% | |
| CATCCTGTTTCAAAGCTTCT+TGG | + | chr6.3:21307536-21307555 | None:intergenic | 40.0% | |
| GCACTGTTGCCATATAGATT+TGG | - | chr6.3:21308763-21308782 | MS.gene042572:intron | 40.0% | |
| GGAGAAGAAGAGTTAGCAAA+AGG | - | chr6.3:21306161-21306180 | MS.gene042572:CDS | 40.0% | |
| GGATGCTATTGGGATCATTA+AGG | - | chr6.3:21307551-21307570 | MS.gene042572:intron | 40.0% | |
| GTGTATGCAGTGAAACATGT+GGG | - | chr6.3:21306323-21306342 | MS.gene042572:intron | 40.0% | |
| GTTGCCATATAGATTTGGAC+TGG | - | chr6.3:21308768-21308787 | MS.gene042572:intron | 40.0% | |
| TATCAGGGAAAGCTTCATGA+AGG | - | chr6.3:21307261-21307280 | MS.gene042572:intron | 40.0% | |
| TATGATAGACGAAACGGAAG+TGG | - | chr6.3:21308712-21308731 | MS.gene042572:intron | 40.0% | |
| TCATTGCAGTTAGCACATCT+TGG | - | chr6.3:21308813-21308832 | MS.gene042572:intron | 40.0% | |
| TCTCCATTCTTAACCAACAC+TGG | + | chr6.3:21308295-21308314 | None:intergenic | 40.0% | |
| TGTGTATGCAGTGAAACATG+TGG | - | chr6.3:21306322-21306341 | MS.gene042572:intron | 40.0% | |
| TTGCTTCTCCTGAAGAGAAA+AGG | + | chr6.3:21307475-21307494 | None:intergenic | 40.0% | |
| ! | CAGACCAAAAGTGCAAGTTA+AGG | + | chr6.3:21307975-21307994 | None:intergenic | 40.0% |
| ! | CTGCTCCTTTTCAGTTTAGA+AGG | - | chr6.3:21308472-21308491 | MS.gene042572:intron | 40.0% |
| !! | GATCCAGTGTTGGTTAAGAA+TGG | - | chr6.3:21308289-21308308 | MS.gene042572:intron | 40.0% |
| !! | GCTTTGAAACAGGATGCTAT+TGG | - | chr6.3:21307540-21307559 | MS.gene042572:intron | 40.0% |
| !! | TTGAAAAAGGCACTTCCATC+GGG | + | chr6.3:21306214-21306233 | None:intergenic | 40.0% |
| !!! | GCTACCTTAACTTGCACTTT+TGG | - | chr6.3:21307968-21307987 | MS.gene042572:intron | 40.0% |
| AAACTAAACTCGGGCTGAGA+CGG | + | chr6.3:21308390-21308409 | None:intergenic | 45.0% | |
| AAACTGAAAAGGAGCAGCTC+TGG | + | chr6.3:21308469-21308488 | None:intergenic | 45.0% | |
| ATAAGGTCTCTCTGTGCACA+TGG | - | chr6.3:21307866-21307885 | MS.gene042572:CDS | 45.0% | |
| ATGTCTTGACTGCGTGAATG+TGG | + | chr6.3:21306576-21306595 | None:intergenic | 45.0% | |
| CTTCATGAAGGGTCAAGACA+TGG | - | chr6.3:21307273-21307292 | MS.gene042572:intron | 45.0% | |
| GAAATAAAGTTAGGGCAGGC+AGG | + | chr6.3:21307373-21307392 | None:intergenic | 45.0% | |
| GTATGGAGCAAATTCACCAC+TGG | - | chr6.3:21309078-21309097 | MS.gene042572:intron | 45.0% | |
| TCACCTATGTGCTTCCCATA+TGG | - | chr6.3:21308547-21308566 | MS.gene042572:intron | 45.0% | |
| TGTCTTGACTGCGTGAATGT+GGG | + | chr6.3:21306575-21306594 | None:intergenic | 45.0% | |
| ! | ATAACAAGTGATGGGGGGTT+AGG | + | chr6.3:21308999-21309018 | None:intergenic | 45.0% |
| ! | GATGTCTGTTGCTATTGCCT+TGG | - | chr6.3:21306345-21306364 | MS.gene042572:intron | 45.0% |
| ! | TAACAAGTGATGGGGGGTTA+GGG | + | chr6.3:21308998-21309017 | None:intergenic | 45.0% |
| ! | TCTGAGGCCAAAATACCTTG+CGG | + | chr6.3:21308948-21308967 | None:intergenic | 45.0% |
| ! | TGGAATTGAGAGTGTGAGTG+AGG | + | chr6.3:21306509-21306528 | None:intergenic | 45.0% |
| !! | GCAATGACCGCAAGGTATTT+TGG | - | chr6.3:21308938-21308957 | MS.gene042572:CDS | 45.0% |
| !! | GCACCAAGAAGCTTTGAAAC+AGG | - | chr6.3:21307530-21307549 | MS.gene042572:intron | 45.0% |
| AACTAAACTCGGGCTGAGAC+GGG | + | chr6.3:21308389-21308408 | None:intergenic | 50.0% | |
| AATGTTTGGGCGAGTTCGCT+TGG | + | chr6.3:21306431-21306450 | None:intergenic | 50.0% | |
| ATGTTTGGGCGAGTTCGCTT+GGG | + | chr6.3:21306430-21306449 | None:intergenic | 50.0% | |
| CCTATGTGCTTCCCATATGG+TGG | - | chr6.3:21308550-21308569 | MS.gene042572:intron | 50.0% | |
| GTCTTGACTGCGTGAATGTG+GGG | + | chr6.3:21306574-21306593 | None:intergenic | 50.0% | |
| TACCTTGCGGTCATTGCAGT+CGG | + | chr6.3:21308935-21308954 | None:intergenic | 50.0% | |
| TCTTGACTGCGTGAATGTGG+GGG | + | chr6.3:21306573-21306592 | None:intergenic | 50.0% | |
| ! | CCACCATATGGGAAGCACAT+AGG | + | chr6.3:21308553-21308572 | None:intergenic | 50.0% |
| CTTGACTGCGTGAATGTGGG+GGG | + | chr6.3:21306572-21306591 | None:intergenic | 55.0% | |
| GGCGATAAGGCGAAATGGGT+TGG | + | chr6.3:21306471-21306490 | None:intergenic | 55.0% | |
| ! | TGCCGACTGCAATGACCGCA+AGG | - | chr6.3:21308930-21308949 | MS.gene042572:CDS | 60.0% |
| ! | GGGAGCACGAGCACGACGAA+TGG | + | chr6.3:21306194-21306213 | None:intergenic | 65.0% |
| CGTCGTGCTCGTGCTCCCGA+TGG | - | chr6.3:21306196-21306215 | MS.gene042572:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 21306154 | 21309222 | 21306154 | ID=MS.gene042572 |
| chr6.3 | mRNA | 21306154 | 21309222 | 21306154 | ID=MS.gene042572.t1;Parent=MS.gene042572 |
| chr6.3 | exon | 21309140 | 21309222 | 21309140 | ID=MS.gene042572.t1.exon1;Parent=MS.gene042572.t1 |
| chr6.3 | CDS | 21309140 | 21309222 | 21309140 | ID=cds.MS.gene042572.t1;Parent=MS.gene042572.t1 |
| chr6.3 | exon | 21308879 | 21309043 | 21308879 | ID=MS.gene042572.t1.exon2;Parent=MS.gene042572.t1 |
| chr6.3 | CDS | 21308879 | 21309043 | 21308879 | ID=cds.MS.gene042572.t1;Parent=MS.gene042572.t1 |
| chr6.3 | exon | 21308019 | 21308109 | 21308019 | ID=MS.gene042572.t1.exon3;Parent=MS.gene042572.t1 |
| chr6.3 | CDS | 21308019 | 21308109 | 21308019 | ID=cds.MS.gene042572.t1;Parent=MS.gene042572.t1 |
| chr6.3 | exon | 21307804 | 21307890 | 21307804 | ID=MS.gene042572.t1.exon4;Parent=MS.gene042572.t1 |
| chr6.3 | CDS | 21307804 | 21307890 | 21307804 | ID=cds.MS.gene042572.t1;Parent=MS.gene042572.t1 |
| chr6.3 | exon | 21306154 | 21306303 | 21306154 | ID=MS.gene042572.t1.exon5;Parent=MS.gene042572.t1 |
| chr6.3 | CDS | 21306154 | 21306303 | 21306154 | ID=cds.MS.gene042572.t1;Parent=MS.gene042572.t1 |
| Gene Sequence |
| Protein sequence |
