AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042636

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042636.t1 MTR_5g054900 95.905 464 13 2 1 462 1 460 0.0 915
MS.gene042636.t1 MTR_5g054900 96.313 434 14 1 31 462 1 434 0.0 863
MS.gene042636.t1 MTR_5g054900 97.167 353 10 0 110 462 1 353 0.0 712
MS.gene042636.t1 MTR_5g054900 96.317 353 9 1 110 462 1 349 0.0 700
MS.gene042636.t1 MTR_7g089800 54.545 440 181 11 24 462 2 423 6.84e-152 439
MS.gene042636.t1 MTR_7g089800 54.545 440 181 11 24 462 31 452 1.77e-151 439
MS.gene042636.t1 MTR_8g040120 60.632 348 125 3 122 462 124 466 1.69e-140 411
MS.gene042636.t1 MTR_1g111310 55.478 429 108 10 64 462 332 707 4.50e-136 408
MS.gene042636.t1 MTR_1g111310 60.534 337 104 5 136 456 3 326 1.76e-116 357
MS.gene042636.t1 MTR_3g087940 49.153 354 151 4 124 462 22 361 6.04e-109 327
MS.gene042636.t1 MTR_7g092750 48.179 357 170 6 118 462 9 362 3.73e-106 320
MS.gene042636.t1 MTR_7g092750 51.613 310 140 3 160 462 157 463 1.94e-105 321
MS.gene042636.t1 MTR_2g086420 52.778 288 126 2 175 462 192 469 2.62e-99 306
MS.gene042636.t1 MTR_2g086420 52.778 288 126 2 175 462 191 468 3.26e-99 306
MS.gene042636.t1 MTR_4g053250 48.930 327 146 4 143 462 149 461 3.56e-99 306
MS.gene042636.t1 MTR_0126s0080 50.175 285 131 3 139 415 178 459 4.75e-93 290
MS.gene042636.t1 MTR_7g092750 46.129 310 131 4 160 462 157 437 1.11e-86 272
MS.gene042636.t1 MTR_8g091650 44.220 346 167 6 124 462 30 356 6.32e-83 260
MS.gene042636.t1 MTR_8g091650 48.780 287 135 3 180 462 5 283 1.69e-82 256
MS.gene042636.t1 MTR_8g091650 48.621 290 137 3 177 462 111 392 1.28e-81 258
MS.gene042636.t1 MTR_5g060950 46.341 287 143 2 177 459 67 346 1.12e-78 249
MS.gene042636.t1 MTR_3g073560 44.483 290 150 2 175 460 63 345 7.61e-77 251
MS.gene042636.t1 MTR_3g044820 67.052 173 46 3 168 329 36 208 1.50e-75 236
MS.gene042636.t1 MTR_1g111320 43.878 196 42 8 64 240 65 211 4.76e-30 116
MS.gene042636.t1 MTR_8g094690 26.556 241 149 4 237 449 7 247 9.92e-13 68.6
MS.gene042636.t1 MTR_1g090370 27.830 212 123 6 249 455 42 228 7.28e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042636.t1 AT1G68640 50.947 475 192 9 3 462 4 452 1.24e-141 414
MS.gene042636.t1 AT3G12250 63.333 330 109 5 143 462 3 330 6.62e-136 394
MS.gene042636.t1 AT3G12250 63.333 330 109 5 143 462 3 330 6.62e-136 394
MS.gene042636.t1 AT3G12250 63.333 330 109 5 143 462 3 330 6.62e-136 394
MS.gene042636.t1 AT3G12250 63.333 330 109 5 143 462 3 330 6.62e-136 394
MS.gene042636.t1 AT3G12250 63.694 314 107 3 154 462 13 324 6.63e-134 389
MS.gene042636.t1 AT3G12250 66.667 288 95 1 175 462 17 303 3.21e-133 387
MS.gene042636.t1 AT5G06950 68.056 288 91 1 175 462 44 330 6.68e-133 387
MS.gene042636.t1 AT5G06950 68.056 288 91 1 175 462 44 330 6.68e-133 387
MS.gene042636.t1 AT5G06950 68.056 288 91 1 175 462 44 330 6.68e-133 387
MS.gene042636.t1 AT5G06950 68.056 288 91 1 175 462 44 330 6.68e-133 387
MS.gene042636.t1 AT5G06950 68.056 288 91 1 175 462 44 330 6.68e-133 387
MS.gene042636.t1 AT3G12250 64.839 310 102 3 158 462 48 355 3.73e-132 386
MS.gene042636.t1 AT5G06960 62.500 288 107 1 175 462 24 310 1.17e-121 357
MS.gene042636.t1 AT5G06960 63.542 288 104 1 175 462 44 330 1.22e-121 358
MS.gene042636.t1 AT5G06960 63.542 288 104 1 175 462 44 330 1.22e-121 358
MS.gene042636.t1 AT1G08320 55.208 288 119 2 175 462 52 329 2.04e-108 325
MS.gene042636.t1 AT1G08320 55.208 288 119 2 175 462 52 329 2.04e-108 325
MS.gene042636.t1 AT1G08320 55.208 288 119 2 175 462 176 453 6.45e-107 326
MS.gene042636.t1 AT1G08320 55.208 288 119 2 175 462 176 453 6.45e-107 326
MS.gene042636.t1 AT1G08320 55.208 288 119 2 175 462 176 453 6.45e-107 326
MS.gene042636.t1 AT5G06839 52.188 320 141 3 155 462 139 458 3.41e-106 323
MS.gene042636.t1 AT5G06839 52.201 318 140 3 157 462 98 415 1.01e-105 320
MS.gene042636.t1 AT5G06839 52.351 319 139 3 157 462 98 416 1.46e-105 320
MS.gene042636.t1 AT5G10030 51.077 325 145 5 144 462 46 362 3.80e-100 304
MS.gene042636.t1 AT5G10030 51.077 325 145 5 144 462 46 362 3.80e-100 304
MS.gene042636.t1 AT5G10030 51.077 325 145 5 144 462 46 362 3.80e-100 304
MS.gene042636.t1 AT5G10030 51.077 325 145 5 144 462 46 362 3.80e-100 304
MS.gene042636.t1 AT5G10030 51.077 325 145 5 144 462 46 362 3.80e-100 304
MS.gene042636.t1 AT1G22070 52.159 301 134 4 166 462 88 382 3.82e-98 300
MS.gene042636.t1 AT1G77920 47.674 344 163 6 122 462 37 366 1.55e-97 298
MS.gene042636.t1 AT5G65210 52.759 290 126 4 177 462 14 296 4.65e-94 286
MS.gene042636.t1 AT5G65210 52.759 290 126 4 177 462 84 366 1.16e-93 288
MS.gene042636.t1 AT5G65210 52.759 290 126 4 177 462 84 366 1.16e-93 288
MS.gene042636.t1 AT5G65210 52.759 290 126 4 177 462 84 366 1.16e-93 288
MS.gene042636.t1 AT5G65210 52.759 290 126 4 177 462 84 366 1.16e-93 288
MS.gene042636.t1 AT5G65210 52.759 290 126 4 177 462 84 366 1.16e-93 288
MS.gene042636.t1 AT5G65210 52.759 290 126 4 177 462 84 366 1.16e-93 288

Find 105 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGTGACCGTTTCCTCTAT+TGG 0.301083 5.2:-46485039 None:intergenic
GATGTATTTCACATGCTCTA+TGG 0.304561 5.2:+46485884 MS.gene042636:CDS
GGGAATAGCTTCCTTGCCTT+TGG 0.313064 5.2:+46483927 MS.gene042636:CDS
GTTGAGAATTGGGCTGATTC+TGG 0.320551 5.2:+46483961 MS.gene042636:CDS
TTCACATGCTCTATGGGTTA+TGG 0.328202 5.2:+46485891 MS.gene042636:CDS
CATTTACCTTCTTCCGTAAC+CGG 0.349444 5.2:-46485225 None:intergenic
CATGTAATCAGATACATTTC+CGG 0.361147 5.2:-46486415 None:intergenic
TCAGTATCCGGTACAGGTTC+CGG 0.367258 5.2:+46486396 MS.gene042636:CDS
AAGTCGAACAATGTTGTTAT+TGG 0.370112 5.2:+46483115 MS.gene042636:CDS
TACGAGCACTTAGTTCGTTA+TGG 0.372994 5.2:+46486850 MS.gene042636:CDS
GGTGGTAGTAACATGCAGTA+TGG 0.375687 5.2:+46483136 MS.gene042636:CDS
GAAATTGTCATGTTGAGAAT+TGG 0.381065 5.2:+46483950 MS.gene042636:CDS
GGAATAGCTTCCTTGCCTTT+GGG 0.406539 5.2:+46483928 MS.gene042636:CDS
TGTTCATTGCAAATGCCATC+TGG 0.411477 5.2:-46486440 None:intergenic
ATCGGCGTTAAATTCTCAAA+TGG 0.422287 5.2:+46485775 MS.gene042636:CDS
GGTGCAGGGTGTTCGGATGC+AGG 0.422787 5.2:+46483868 MS.gene042636:CDS
GTGATCTTCAGCTCTGAACT+TGG 0.429104 5.2:-46485072 None:intergenic
CAAGTCCACCCCTACTCCCT+TGG 0.429505 5.2:-46486882 None:intergenic
AATGAACAAGCTTGCACTCC+TGG 0.437038 5.2:+46486455 MS.gene042636:CDS
TCTGCTTGTCGATGGTGTTA+TGG 0.438171 5.2:+46485814 MS.gene042636:CDS
CGGAAATGTATCTGATTACA+TGG 0.440246 5.2:+46486416 MS.gene042636:CDS
ACTTTATGTTAGTCCAATAG+AGG 0.440624 5.2:+46485026 MS.gene042636:intron
GCCACCAACCCTTCTTGCTT+AGG 0.443177 5.2:+46482792 MS.gene042636:CDS
TTCAAATGGTGCAGGGTGTT+CGG 0.453099 5.2:+46483861 MS.gene042636:CDS
TCCTCCACACCCTCAGTATC+CGG 0.457605 5.2:+46486384 MS.gene042636:CDS
GTTAACTGAAAATCAGTTGA+TGG 0.459301 5.2:+46486269 MS.gene042636:CDS
AAATTGTCATGTTGAGAATT+GGG 0.469910 5.2:+46483951 MS.gene042636:CDS
ATGTATTTCACATGCTCTAT+GGG 0.473912 5.2:+46485885 MS.gene042636:CDS
TATTTAGATTAAAGAGCATA+GGG 0.475914 5.2:+46485852 MS.gene042636:CDS
TGACGTGGAATACGCCCATT+GGG 0.479685 5.2:+46485718 MS.gene042636:CDS
GCTTCAACGAGTACGTCAAC+AGG 0.481742 5.2:+46485428 MS.gene042636:CDS
GATCAAGGTCATTCTTCTGT+TGG 0.485204 5.2:+46485557 MS.gene042636:CDS
AAGTCCACCCCTACTCCCTT+GGG 0.485810 5.2:-46486881 None:intergenic
GGTCATTCTTCTGTTGGAAA+CGG 0.488205 5.2:+46485563 MS.gene042636:CDS
TCGAACAATGTTGTTATTGG+TGG 0.490749 5.2:+46483118 MS.gene042636:CDS
GGCATGTGTATTGCAAATCC+TGG 0.490974 5.2:+46485533 MS.gene042636:CDS
GAAGAATGACCTTGATCTCC+AGG 0.492393 5.2:-46485551 None:intergenic
TGTTAGTCCAATAGAGGAAA+CGG 0.492474 5.2:+46485032 MS.gene042636:intron
GCATCTTGTTGTGGAAAGAA+AGG 0.513779 5.2:-46482962 None:intergenic
TTGACGTGGAATACGCCCAT+TGG 0.515295 5.2:+46485717 MS.gene042636:CDS
CTCAGAATCGCGAGGCGGCA+AGG 0.517608 5.2:+46485197 MS.gene042636:CDS
GTTAGCACGCCCAAGGGAGT+AGG 0.519419 5.2:+46486872 MS.gene042636:CDS
TACATTTCCGGAACCTGTAC+CGG 0.526133 5.2:-46486403 None:intergenic
TTAGCACGCCCAAGGGAGTA+GGG 0.528902 5.2:+46486873 MS.gene042636:CDS
TCGGCGTTAAATTCTCAAAT+GGG 0.532056 5.2:+46485776 MS.gene042636:CDS
ATTGCAAATCCTGGAGATCA+AGG 0.533726 5.2:+46485542 MS.gene042636:CDS
GAGATTGCTTCAAATGGTGC+AGG 0.534085 5.2:+46483853 MS.gene042636:CDS
TCTTCAGCAGTCTACTCAGC+AGG 0.536008 5.2:+46486302 MS.gene042636:CDS
GAAGAGCCGGTTACGGAAGA+AGG 0.537480 5.2:+46485219 MS.gene042636:CDS
GTGCAGGGTGTTCGGATGCA+GGG 0.541110 5.2:+46483869 MS.gene042636:CDS
ACTCACTTGGTGTTTATCAT+CGG 0.542557 5.2:-46484043 None:intergenic
CAAACATACCTAAGCAAGAA+GGG 0.547170 5.2:-46482800 None:intergenic
TTGATGCTCGTCAACCCAAT+GGG 0.548501 5.2:-46485732 None:intergenic
CGGCAAGGAAGAGCCGGTTA+CGG 0.550063 5.2:+46485212 MS.gene042636:CDS
CGTTATGGTTAGCACGCCCA+AGG 0.550245 5.2:+46486865 MS.gene042636:CDS
GCAGAGTTTCTTGCTTCAAG+AGG 0.550378 5.2:-46486752 None:intergenic
ACCTAAGCAAGAAGGGTTGG+TGG 0.551481 5.2:-46482793 None:intergenic
TGACGACACGTCAGACTGCA+AGG 0.551582 5.2:+46486793 MS.gene042636:CDS
CCTTGTGAAGGAAATCCTCC+AGG 0.552077 5.2:-46486473 None:intergenic
TTAACTGAAAATCAGTTGAT+GGG 0.554063 5.2:+46486270 MS.gene042636:CDS
GCGAGGCGGCAAGGAAGAGC+CGG 0.555351 5.2:+46485206 MS.gene042636:CDS
GTGGTAGTAACATGCAGTAT+GGG 0.556094 5.2:+46483137 MS.gene042636:CDS
ATCTGATTACATGGGCCAGA+TGG 0.556171 5.2:+46486425 MS.gene042636:CDS
TGGAAGTATCATCAGTCTGT+TGG 0.557670 5.2:-46484002 None:intergenic
CCTTGAGAATTTCAGATGAA+CGG 0.560398 5.2:-46485955 None:intergenic
GCAGTCTACTCAGCAGGCTG+AGG 0.561351 5.2:+46486308 MS.gene042636:CDS
TCTGCAGAGATTGCTTCAAA+TGG 0.562418 5.2:+46483847 MS.gene042636:CDS
GTTGATGCTCGTCAACCCAA+TGG 0.564292 5.2:-46485733 None:intergenic
TTATTTAGATTAAAGAGCAT+AGG 0.568168 5.2:+46485851 MS.gene042636:CDS
ACACCCTCAGTATCCGGTAC+AGG 0.569132 5.2:+46486390 MS.gene042636:CDS
GATTCTGAGCAAGTCTGCGA+AGG 0.570330 5.2:-46485183 None:intergenic
CCGTTCATCTGAAATTCTCA+AGG 0.573160 5.2:+46485955 MS.gene042636:CDS
AAATCAACAGCATCTTGTTG+TGG 0.584033 5.2:-46482971 None:intergenic
CATACCTAAGCAAGAAGGGT+TGG 0.587270 5.2:-46482796 None:intergenic
CCTGGAGGATTTCCTTCACA+AGG 0.589186 5.2:+46486473 MS.gene042636:CDS
TAGCACGCCCAAGGGAGTAG+GGG 0.590305 5.2:+46486874 MS.gene042636:CDS
GCTGAGGATGCTTTATCTCA+CGG 0.592632 5.2:+46486324 MS.gene042636:CDS
TGTACCGGATACTGAGGGTG+TGG 0.601254 5.2:-46486388 None:intergenic
AAATGTAATCATTTCTGACA+AGG 0.602307 5.2:-46486821 None:intergenic
ACAAACATACCTAAGCAAGA+AGG 0.605783 5.2:-46482801 None:intergenic
ATGACAATTTCCCAAAGGCA+AGG 0.624956 5.2:-46483938 None:intergenic
GGTATCGATATCAATATCAG+TGG 0.627662 5.2:-46484022 None:intergenic
ATTCTGAGCAAGTCTGCGAA+GGG 0.627771 5.2:-46485182 None:intergenic
TCAACATGACAATTTCCCAA+AGG 0.632745 5.2:-46483943 None:intergenic
TATGCTCAATGATCTAAGAT+CGG 0.636922 5.2:+46485757 MS.gene042636:CDS
ACCGGATACTGAGGGTGTGG+AGG 0.638958 5.2:-46486385 None:intergenic
GAATTGGGCTGATTCTGGCG+TGG 0.640437 5.2:+46483966 MS.gene042636:CDS
GGAACCTGTACCGGATACTG+AGG 0.640922 5.2:-46486394 None:intergenic
GACGACACGTCAGACTGCAA+GGG 0.641820 5.2:+46486794 MS.gene042636:CDS
GTTCAGAGCTGAAGATCACA+AGG 0.647306 5.2:+46485076 MS.gene042636:CDS
GGATGCTTTATCTCACGGCA+TGG 0.651448 5.2:+46486329 MS.gene042636:CDS
GAACAAGCTTGCACTCCTGG+AGG 0.653361 5.2:+46486458 MS.gene042636:CDS
GAATTGCATCTGCTTGTCGA+TGG 0.653447 5.2:+46485806 MS.gene042636:CDS
AGGTGCTCTAGCATTTGACG+TGG 0.664319 5.2:+46485703 MS.gene042636:intron
TTTCAGTTAACGGCTCGAGG+TGG 0.666369 5.2:-46486257 None:intergenic
AGATTGCTTCAAATGGTGCA+GGG 0.667836 5.2:+46483854 MS.gene042636:CDS
GTATGGGACAACAATTAACA+TGG 0.671970 5.2:+46483153 MS.gene042636:CDS
CAGACTTGCTCAGAATCGCG+AGG 0.675205 5.2:+46485189 MS.gene042636:CDS
GGAAATGTATCTGATTACAT+GGG 0.675444 5.2:+46486417 MS.gene042636:CDS
GCAGCAGCTGATGTACAACA+AGG 0.679055 5.2:+46483906 MS.gene042636:CDS
ATTTAGATTAAAGAGCATAG+GGG 0.679279 5.2:+46485853 MS.gene042636:CDS
GAACCTGTACCGGATACTGA+GGG 0.682981 5.2:-46486393 None:intergenic
GTTATGGTTAGCACGCCCAA+GGG 0.694685 5.2:+46486866 MS.gene042636:CDS
ACTTGCTCAGAATCGCGAGG+CGG 0.696700 5.2:+46485192 MS.gene042636:CDS
CAGCAGCTGATGTACAACAA+GGG 0.710804 5.2:+46483907 MS.gene042636:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAAAAAAAAACAC+TGG - chr5.2:46484125-46484144 None:intergenic 10.0%
!! AATAAATAAAAAAAAACACT+GGG - chr5.2:46484124-46484143 None:intergenic 10.0%
!!! GATATATATATTTTTTTTTG+AGG + chr5.2:46484586-46484605 MS.gene042636:intron 10.0%
!! AAAAAAAAGACTTAATAAAC+TGG + chr5.2:46483731-46483750 MS.gene042636:intron 15.0%
!! AAAAAAAGACTTAATAAACT+GGG + chr5.2:46483732-46483751 MS.gene042636:intron 15.0%
!!! ATTATGTTACATTTTTTCAA+AGG - chr5.2:46483237-46483256 None:intergenic 15.0%
!!! TATAAATTGACTACTATTTT+GGG - chr5.2:46484229-46484248 None:intergenic 15.0%
!!! TGAATTTTAGTTTAAACAAA+TGG + chr5.2:46484622-46484641 MS.gene042636:intron 15.0%
!!! TTAAGCTTTAATGATATATA+TGG + chr5.2:46485333-46485352 MS.gene042636:intron 15.0%
!!! TTATAAATTGACTACTATTT+TGG - chr5.2:46484230-46484249 None:intergenic 15.0%
!!! TTATGTTACATTTTTTCAAA+GGG - chr5.2:46483236-46483255 None:intergenic 15.0%
!!! TTTTTTAATAAAATTAGGGA+AGG - chr5.2:46483716-46483735 None:intergenic 15.0%
!! AATATAGATACATATGCAAA+AGG - chr5.2:46485274-46485293 None:intergenic 20.0%
!! AGTTATTGTATTGTTTGTAT+CGG - chr5.2:46484843-46484862 None:intergenic 20.0%
!! ATAATGTTTATTGATCATTC+AGG + chr5.2:46485683-46485702 MS.gene042636:intron 20.0%
!! CAAATAAAAAATCTTTCTAC+TGG - chr5.2:46485923-46485942 None:intergenic 20.0%
!! TTAATGATATATATGGATGT+TGG + chr5.2:46485340-46485359 MS.gene042636:intron 20.0%
!!! AAACTGTTTTTTTTTTTTGC+AGG + chr5.2:46483073-46483092 MS.gene042636:intron 20.0%
!!! ATTGAATCACCTTTTTTTTA+AGG - chr5.2:46484507-46484526 None:intergenic 20.0%
!!! CAGTAGAAAGATTTTTTATT+TGG + chr5.2:46485921-46485940 MS.gene042636:CDS 20.0%
!!! CATAATTAAATTTCTGAGAA+AGG + chr5.2:46483251-46483270 MS.gene042636:intron 20.0%
!!! TACAATTTTTTTTTTCCTCA+TGG + chr5.2:46485492-46485511 MS.gene042636:intron 20.0%
!!! TATTTAGATTAAAGAGCATA+GGG + chr5.2:46485852-46485871 MS.gene042636:CDS 20.0%
!!! TTATTTAGATTAAAGAGCAT+AGG + chr5.2:46485851-46485870 MS.gene042636:CDS 20.0%
!!! TTTATAGTGCGTTTTTTAAT+TGG + chr5.2:46485989-46486008 MS.gene042636:intron 20.0%
! AAAAAATTGATCTAAACAGC+CGG + chr5.2:46484152-46484171 MS.gene042636:intron 25.0%
! AAAATCTGAACTAACTTCAA+AGG - chr5.2:46484408-46484427 None:intergenic 25.0%
! AAATGTAATCATTTCTGACA+AGG - chr5.2:46486824-46486843 None:intergenic 25.0%
! AAATTGTCATGTTGAGAATT+GGG + chr5.2:46483951-46483970 MS.gene042636:CDS 25.0%
! AATTGTACATAAACATCAAC+TGG - chr5.2:46485479-46485498 None:intergenic 25.0%
! ACAAAAAATTCACATGAAGA+CGG - chr5.2:46486616-46486635 None:intergenic 25.0%
! AGAGTCAATAAGTAAGAAAA+TGG + chr5.2:46484474-46484493 MS.gene042636:intron 25.0%
! AGTTAATCTTTCTATGCTAA+GGG + chr5.2:46486510-46486529 MS.gene042636:intron 25.0%
! ATCATTAACTCTTACACTTT+AGG + chr5.2:46483298-46483317 MS.gene042636:intron 25.0%
! ATGATTATTAGTGTAACACT+AGG + chr5.2:46483404-46483423 MS.gene042636:intron 25.0%
! CAATAAACATTATCACAACA+CGG - chr5.2:46485676-46485695 None:intergenic 25.0%
! CTTACAATACACTAAATGAT+GGG + chr5.2:46483499-46483518 MS.gene042636:intron 25.0%
! GAGTCAATAAGTAAGAAAAT+GGG + chr5.2:46484475-46484494 MS.gene042636:intron 25.0%
! GTAAGAGTTAATGATTCTAA+AGG - chr5.2:46483293-46483312 None:intergenic 25.0%
! TACACGAGTATTTAAAAATG+AGG - chr5.2:46484919-46484938 None:intergenic 25.0%
! TTAACTGAAAATCAGTTGAT+GGG + chr5.2:46486270-46486289 MS.gene042636:CDS 25.0%
! TTGGGTGTTTAAATTAGAAA+GGG - chr5.2:46484211-46484230 None:intergenic 25.0%
! TTTGGGTGTTTAAATTAGAA+AGG - chr5.2:46484212-46484231 None:intergenic 25.0%
!! ATAATTTGAAATTTATCCCG+AGG + chr5.2:46484246-46484265 MS.gene042636:intron 25.0%
!! ATATCTATTTTACCTTGTGA+AGG - chr5.2:46486488-46486507 None:intergenic 25.0%
!! ATTTAGATTAAAGAGCATAG+GGG + chr5.2:46485853-46485872 MS.gene042636:CDS 25.0%
!! ATTTTGAACACTATACTTTG+AGG - chr5.2:46483357-46483376 None:intergenic 25.0%
!! TTGATTCTGTAATTTTCATG+AGG + chr5.2:46483438-46483457 MS.gene042636:intron 25.0%
!! TTGTGTTTTCATAGAATGTT+GGG + chr5.2:46483824-46483843 MS.gene042636:intron 25.0%
!! TTTGTGTTTTCATAGAATGT+TGG + chr5.2:46483823-46483842 MS.gene042636:intron 25.0%
!!! ATATGGATGTTGGTTTTAAT+AGG + chr5.2:46485350-46485369 MS.gene042636:intron 25.0%
!!! ATATTTTTGTTGTAGACCAA+GGG + chr5.2:46485289-46485308 MS.gene042636:intron 25.0%
!!! ATCAACTGATTTTCAGTTAA+CGG - chr5.2:46486270-46486289 None:intergenic 25.0%
!!! GAAAGATTTTTTATTTGGCA+TGG + chr5.2:46485926-46485945 MS.gene042636:CDS 25.0%
!!! TATATTTTTGTTGTAGACCA+AGG + chr5.2:46485288-46485307 MS.gene042636:intron 25.0%
!!! TCTATTTTTCACATTCATCA+AGG - chr5.2:46486568-46486587 None:intergenic 25.0%
AAAAAGCTAAGAGAGAAAAG+AGG - chr5.2:46483187-46483206 None:intergenic 30.0%
AAATTAGAAAGGGGGATAAA+GGG - chr5.2:46484201-46484220 None:intergenic 30.0%
AACACCTCATGAAAATTACA+GGG - chr5.2:46483573-46483592 None:intergenic 30.0%
AACCATGTATTTGAACTACT+TGG - chr5.2:46486679-46486698 None:intergenic 30.0%
AAGTCGAACAATGTTGTTAT+TGG + chr5.2:46483115-46483134 MS.gene042636:CDS 30.0%
AATAAAAAAAAACACTGGGC+TGG - chr5.2:46484120-46484139 None:intergenic 30.0%
ACTATCTTTGATCTTTGATG+TGG + chr5.2:46484374-46484393 MS.gene042636:intron 30.0%
ACTTTATAACACAAGGGAAA+AGG - chr5.2:46486086-46486105 None:intergenic 30.0%
ACTTTATGTTAGTCCAATAG+AGG + chr5.2:46485026-46485045 MS.gene042636:intron 30.0%
AGCAAAACATGTATGAGAAA+TGG - chr5.2:46484803-46484822 None:intergenic 30.0%
AGCTTGACTTTATAACACAA+GGG - chr5.2:46486092-46486111 None:intergenic 30.0%
ATAAAAAAAAACACTGGGCT+GGG - chr5.2:46484119-46484138 None:intergenic 30.0%
ATCTGGACATAAAATATCAG+TGG - chr5.2:46484750-46484769 None:intergenic 30.0%
ATGTATTTCACATGCTCTAT+GGG + chr5.2:46485885-46485904 MS.gene042636:CDS 30.0%
CAGTTAATCTTTCTATGCTA+AGG + chr5.2:46486509-46486528 MS.gene042636:intron 30.0%
CATGTAATCAGATACATTTC+CGG - chr5.2:46486418-46486437 None:intergenic 30.0%
CATTAAAATTCACAACCATG+AGG - chr5.2:46485510-46485529 None:intergenic 30.0%
GAAATTGTCATGTTGAGAAT+TGG + chr5.2:46483950-46483969 MS.gene042636:CDS 30.0%
GCATTCTCTTGTGATAAAAA+TGG + chr5.2:46482841-46482860 MS.gene042636:intron 30.0%
GCTTACAATACACTAAATGA+TGG + chr5.2:46483498-46483517 MS.gene042636:intron 30.0%
GGAAATGTATCTGATTACAT+GGG + chr5.2:46486417-46486436 MS.gene042636:CDS 30.0%
GTTAACTGAAAATCAGTTGA+TGG + chr5.2:46486269-46486288 MS.gene042636:CDS 30.0%
TAAATTAGAAAGGGGGATAA+AGG - chr5.2:46484202-46484221 None:intergenic 30.0%
TAACACCTCATGAAAATTAC+AGG - chr5.2:46483574-46483593 None:intergenic 30.0%
TCTGGACATAAAATATCAGT+GGG - chr5.2:46484749-46484768 None:intergenic 30.0%
TGGGTGTTTAAATTAGAAAG+GGG - chr5.2:46484210-46484229 None:intergenic 30.0%
TTAATCAGACGCAAAACATA+AGG - chr5.2:46483797-46483816 None:intergenic 30.0%
! ACAACTGTTTCGAGAAATTT+TGG + chr5.2:46486059-46486078 MS.gene042636:intron 30.0%
! ACAATGCGTTTTTCTGATAT+TGG + chr5.2:46482920-46482939 MS.gene042636:CDS 30.0%
! GAAGTTAGTTCAGATTTTGA+CGG + chr5.2:46484410-46484429 MS.gene042636:intron 30.0%
! GTTTTTGATGAAACAAACAG+AGG + chr5.2:46482878-46482897 MS.gene042636:intron 30.0%
! TATGCTCAATGATCTAAGAT+CGG + chr5.2:46485757-46485776 MS.gene042636:CDS 30.0%
! TGATTCTAAAGGACAATTTG+TGG - chr5.2:46483282-46483301 None:intergenic 30.0%
!! AAAAATGGTTCATGCTGTTT+TGG + chr5.2:46482856-46482875 MS.gene042636:intron 30.0%
!! ATGGTTGTGAATTTTAATGC+AGG + chr5.2:46485511-46485530 MS.gene042636:intron 30.0%
!! TATTTTTGTTGTAGACCAAG+GGG + chr5.2:46485290-46485309 MS.gene042636:intron 30.0%
!! TGGTTGTGAATTTTAATGCA+GGG + chr5.2:46485512-46485531 MS.gene042636:intron 30.0%
!! TTGTTGTCATGCTTGTTTTT+AGG + chr5.2:46486725-46486744 MS.gene042636:intron 30.0%
!! TTTTGATCTAGTTCCTGATT+TGG + chr5.2:46485142-46485161 MS.gene042636:intron 30.0%
!!! CGTTTTTTAATTGGAGAATG+AGG + chr5.2:46485998-46486017 MS.gene042636:intron 30.0%
!!! TTACCCTATTTTTACACAAG+TGG - chr5.2:46483475-46483494 None:intergenic 30.0%
AAACATTATCACAACACGGT+GGG - chr5.2:46485672-46485691 None:intergenic 35.0%
AAATCAACAGCATCTTGTTG+TGG - chr5.2:46482974-46482993 None:intergenic 35.0%
AAATGGTCTCGATGGAAATA+TGG + chr5.2:46485243-46485262 MS.gene042636:intron 35.0%
AACATGTATGAGAAATGGAG+AGG - chr5.2:46484798-46484817 None:intergenic 35.0%
AATGGTCTCGATGGAAATAT+GGG + chr5.2:46485244-46485263 MS.gene042636:intron 35.0%
ACAAACATACCTAAGCAAGA+AGG - chr5.2:46482804-46482823 None:intergenic 35.0%
ACAGCCACTTGTGTAAAAAT+AGG + chr5.2:46483468-46483487 MS.gene042636:intron 35.0%
ATCGGCGTTAAATTCTCAAA+TGG + chr5.2:46485775-46485794 MS.gene042636:CDS 35.0%
CAAACATACCTAAGCAAGAA+GGG - chr5.2:46482803-46482822 None:intergenic 35.0%
CAGCCACTTGTGTAAAAATA+GGG + chr5.2:46483469-46483488 MS.gene042636:intron 35.0%
CATGTATTTGAACTACTTGG+CGG - chr5.2:46486676-46486695 None:intergenic 35.0%
CCTTGAGAATTTCAGATGAA+CGG - chr5.2:46485958-46485977 None:intergenic 35.0%
CGGAAATGTATCTGATTACA+TGG + chr5.2:46486416-46486435 MS.gene042636:CDS 35.0%
GAGCTTGACTTTATAACACA+AGG - chr5.2:46486093-46486112 None:intergenic 35.0%
GATGTATTTCACATGCTCTA+TGG + chr5.2:46485884-46485903 MS.gene042636:CDS 35.0%
GGGTGACTTCCTTAAAAAAA+AGG + chr5.2:46484495-46484514 MS.gene042636:intron 35.0%
GGGTGTTTAAATTAGAAAGG+GGG - chr5.2:46484209-46484228 None:intergenic 35.0%
GTACTGTTGAATTGACTATG+AGG - chr5.2:46486133-46486152 None:intergenic 35.0%
GTATGGGACAACAATTAACA+TGG + chr5.2:46483153-46483172 MS.gene042636:CDS 35.0%
TAAACATTATCACAACACGG+TGG - chr5.2:46485673-46485692 None:intergenic 35.0%
TCAACATGACAATTTCCCAA+AGG - chr5.2:46483946-46483965 None:intergenic 35.0%
TCGGCGTTAAATTCTCAAAT+GGG + chr5.2:46485776-46485795 MS.gene042636:CDS 35.0%
TGGAAACGGTAATGAATTGT+GGG + chr5.2:46485577-46485596 MS.gene042636:intron 35.0%
TGTTAGTCCAATAGAGGAAA+CGG + chr5.2:46485032-46485051 MS.gene042636:intron 35.0%
TTGGAAACGGTAATGAATTG+TGG + chr5.2:46485576-46485595 MS.gene042636:intron 35.0%
! AATTCAAATTCCCTCTGAGA+CGG + chr5.2:46483374-46483393 MS.gene042636:intron 35.0%
! ATTTTACAACTATCTCCGAG+AGG - chr5.2:46483648-46483667 None:intergenic 35.0%
! TCGAACAATGTTGTTATTGG+TGG + chr5.2:46483118-46483137 MS.gene042636:CDS 35.0%
! TTTTACAACTATCTCCGAGA+GGG - chr5.2:46483647-46483666 None:intergenic 35.0%
!! ACTCACTTGGTGTTTATCAT+CGG - chr5.2:46484046-46484065 None:intergenic 35.0%
!! ATTTTCATGAGGTGTTAGCT+CGG + chr5.2:46483577-46483596 MS.gene042636:intron 35.0%
!! GAAAAAAGAGCATCCAAATC+AGG - chr5.2:46485158-46485177 None:intergenic 35.0%
!! GGTATCGATATCAATATCAG+TGG - chr5.2:46484025-46484044 None:intergenic 35.0%
AAAGGGAAAACGTGAGTGTT+TGG - chr5.2:46484184-46484203 None:intergenic 40.0%
AAGAAGGTAAATGGTCTCGA+TGG + chr5.2:46485235-46485254 MS.gene042636:intron 40.0%
AGATTGCTTCAAATGGTGCA+GGG + chr5.2:46483854-46483873 MS.gene042636:CDS 40.0%
AGGATACACTATTACTCGCT+AGG - chr5.2:46483777-46483796 None:intergenic 40.0%
ATGAAAATTACAGGGCAACC+CGG - chr5.2:46483565-46483584 None:intergenic 40.0%
ATGACAATTTCCCAAAGGCA+AGG - chr5.2:46483941-46483960 None:intergenic 40.0%
ATGTTAAACTCGTTTCACCG+AGG - chr5.2:46483329-46483348 None:intergenic 40.0%
ATTGCAAATCCTGGAGATCA+AGG + chr5.2:46485542-46485561 MS.gene042636:CDS 40.0%
CAAGGGGTTACTGAATTCAA+AGG + chr5.2:46485306-46485325 MS.gene042636:intron 40.0%
CACATGAAGACGGTAACTTA+GGG - chr5.2:46486606-46486625 None:intergenic 40.0%
CATTTACCTTCTTCCGTAAC+CGG - chr5.2:46485228-46485247 None:intergenic 40.0%
CGCCAAGTAGTTCAAATACA+TGG + chr5.2:46486674-46486693 MS.gene042636:intron 40.0%
CTTTCATTGTGCAAAGCTTG+CGG + chr5.2:46484337-46484356 MS.gene042636:intron 40.0%
CTTTGAATTCAGTAACCCCT+TGG - chr5.2:46485308-46485327 None:intergenic 40.0%
GATCAAGGTCATTCTTCTGT+TGG + chr5.2:46485557-46485576 MS.gene042636:CDS 40.0%
GGATACACTATTACTCGCTA+GGG - chr5.2:46483776-46483795 None:intergenic 40.0%
GGTCATTCTTCTGTTGGAAA+CGG + chr5.2:46485563-46485582 MS.gene042636:CDS 40.0%
GTGGTAGTAACATGCAGTAT+GGG + chr5.2:46483137-46483156 MS.gene042636:CDS 40.0%
TACGAGCACTTAGTTCGTTA+TGG + chr5.2:46486850-46486869 MS.gene042636:CDS 40.0%
TCACATGAAGACGGTAACTT+AGG - chr5.2:46486607-46486626 None:intergenic 40.0%
TCTGCAGAGATTGCTTCAAA+TGG + chr5.2:46483847-46483866 MS.gene042636:CDS 40.0%
TGTTCATTGCAAATGCCATC+TGG - chr5.2:46486443-46486462 None:intergenic 40.0%
TTAGCTCGGTTATTAGAGCT+TGG + chr5.2:46483591-46483610 MS.gene042636:intron 40.0%
! CATTTTACAACCGTCTCAGA+GGG - chr5.2:46483387-46483406 None:intergenic 40.0%
! CCGTTCATCTGAAATTCTCA+AGG + chr5.2:46485955-46485974 MS.gene042636:CDS 40.0%
! GCATCTTGTTGTGGAAAGAA+AGG - chr5.2:46482965-46482984 None:intergenic 40.0%
! GTTGCCCTGTAATTTTCATG+AGG + chr5.2:46483566-46483585 MS.gene042636:intron 40.0%
! GTTTTGCTGACATCTGATAG+CGG + chr5.2:46484996-46485015 MS.gene042636:intron 40.0%
! TCATTTTACAACCGTCTCAG+AGG - chr5.2:46483388-46483407 None:intergenic 40.0%
! TTACACTTTAGGTGCTACCT+CGG + chr5.2:46483309-46483328 MS.gene042636:intron 40.0%
! TTCACATGCTCTATGGGTTA+TGG + chr5.2:46485891-46485910 MS.gene042636:CDS 40.0%
!! GTTAGTTCAGATTTTGACGG+TGG + chr5.2:46484413-46484432 MS.gene042636:intron 40.0%
!! TGGAAGTATCATCAGTCTGT+TGG - chr5.2:46484005-46484024 None:intergenic 40.0%
AAACACCAAGTGAGTTACCC+AGG + chr5.2:46484051-46484070 MS.gene042636:intron 45.0%
AAATGGAGAGGTAACTCCAG+GGG - chr5.2:46484786-46484805 None:intergenic 45.0%
AACACCAAGTGAGTTACCCA+GGG + chr5.2:46484052-46484071 MS.gene042636:intron 45.0%
AATGAACAAGCTTGCACTCC+TGG + chr5.2:46486455-46486474 MS.gene042636:CDS 45.0%
AGAAATGGAGAGGTAACTCC+AGG - chr5.2:46484788-46484807 None:intergenic 45.0%
AGAGTGACCGTTTCCTCTAT+TGG - chr5.2:46485042-46485061 None:intergenic 45.0%
AGCGATGTTCAAATCCCTCT+CGG + chr5.2:46483630-46483649 MS.gene042636:intron 45.0%
ATCTGATTACATGGGCCAGA+TGG + chr5.2:46486425-46486444 MS.gene042636:CDS 45.0%
ATTCTGAGCAAGTCTGCGAA+GGG - chr5.2:46485185-46485204 None:intergenic 45.0%
CAGCAGCTGATGTACAACAA+GGG + chr5.2:46483907-46483926 MS.gene042636:CDS 45.0%
CATACCTAAGCAAGAAGGGT+TGG - chr5.2:46482799-46482818 None:intergenic 45.0%
CGGTTACGGAAGAAGGTAAA+TGG + chr5.2:46485226-46485245 MS.gene042636:intron 45.0%
GAAAACGTGAGTGTTTGGAC+TGG - chr5.2:46484179-46484198 None:intergenic 45.0%
GAAATGGAGAGGTAACTCCA+GGG - chr5.2:46484787-46484806 None:intergenic 45.0%
GAAATTTATCCCGAGGTCAC+AGG + chr5.2:46484253-46484272 MS.gene042636:intron 45.0%
GAAGAATGACCTTGATCTCC+AGG - chr5.2:46485554-46485573 None:intergenic 45.0%
GAATTGCATCTGCTTGTCGA+TGG + chr5.2:46485806-46485825 MS.gene042636:CDS 45.0%
GAGATTGCTTCAAATGGTGC+AGG + chr5.2:46483853-46483872 MS.gene042636:CDS 45.0%
GCAGAGTTTCTTGCTTCAAG+AGG - chr5.2:46486755-46486774 None:intergenic 45.0%
GCTGAGGATGCTTTATCTCA+CGG + chr5.2:46486324-46486343 MS.gene042636:CDS 45.0%
GGAATAGCTTCCTTGCCTTT+GGG + chr5.2:46483928-46483947 MS.gene042636:CDS 45.0%
GGCATACTGGAGTAGGAATA+CGG - chr5.2:46486643-46486662 None:intergenic 45.0%
GGCATGTGTATTGCAAATCC+TGG + chr5.2:46485533-46485552 MS.gene042636:CDS 45.0%
GGTGGTAGTAACATGCAGTA+TGG + chr5.2:46483136-46483155 MS.gene042636:CDS 45.0%
GTTCAGAGCTGAAGATCACA+AGG + chr5.2:46485076-46485095 MS.gene042636:CDS 45.0%
TACATTTCCGGAACCTGTAC+CGG - chr5.2:46486406-46486425 None:intergenic 45.0%
TTGAACTACTTGGCGGAGAA+GGG - chr5.2:46486669-46486688 None:intergenic 45.0%
TTGATGCTCGTCAACCCAAT+GGG - chr5.2:46485735-46485754 None:intergenic 45.0%
TTTGAACTACTTGGCGGAGA+AGG - chr5.2:46486670-46486689 None:intergenic 45.0%
! ATGCAGGAGCTTTAGTGTAC+CGG + chr5.2:46483543-46483562 MS.gene042636:intron 45.0%
! GATTTTCAGTTAACGGCTCG+AGG - chr5.2:46486263-46486282 None:intergenic 45.0%
! GTTGAGAATTGGGCTGATTC+TGG + chr5.2:46483961-46483980 MS.gene042636:CDS 45.0%
! TAAATGATGGGACCCTTTCC+TGG + chr5.2:46483511-46483530 MS.gene042636:intron 45.0%
! TCTGCTTGTCGATGGTGTTA+TGG + chr5.2:46485814-46485833 MS.gene042636:CDS 45.0%
! TTCAAATGGTGCAGGGTGTT+CGG + chr5.2:46483861-46483880 MS.gene042636:CDS 45.0%
!! GTGATCTTCAGCTCTGAACT+TGG - chr5.2:46485075-46485094 None:intergenic 45.0%
!! ATTAAGAATAATTAATTATA+TGG - chr5.2:46486190-46486209 None:intergenic 5.0%
!! ATTATTATTAATTAATAAAG+TGG - chr5.2:46483683-46483702 None:intergenic 5.0%
!!! ATATATATATTTTTTTTTGA+GGG + chr5.2:46484587-46484606 MS.gene042636:intron 5.0%
!!! CTTTTTTTTTAATAAAATTA+GGG - chr5.2:46483720-46483739 None:intergenic 5.0%
!!! TCTTTTTTTTTAATAAAATT+AGG - chr5.2:46483721-46483740 None:intergenic 5.0%
ACACCAAGTGAGTTACCCAG+GGG + chr5.2:46484053-46484072 MS.gene042636:intron 50.0%
ACCTAAGCAAGAAGGGTTGG+TGG - chr5.2:46482796-46482815 None:intergenic 50.0%
ACTAAAGCTCCTGCATACGC+AGG - chr5.2:46483539-46483558 None:intergenic 50.0%
AGGTGCTCTAGCATTTGACG+TGG + chr5.2:46485703-46485722 MS.gene042636:intron 50.0%
ATTAAGCGTGCCTGTGACCT+CGG - chr5.2:46484266-46484285 None:intergenic 50.0%
CACAGGCACGCTTAATGTCA+AGG + chr5.2:46484270-46484289 MS.gene042636:intron 50.0%
CATCGCTCCTTCAGCTTACA+AGG - chr5.2:46483617-46483636 None:intergenic 50.0%
CCTGGAGGATTTCCTTCACA+AGG + chr5.2:46486473-46486492 MS.gene042636:CDS 50.0%
CCTTGTGAAGGAAATCCTCC+AGG - chr5.2:46486476-46486495 None:intergenic 50.0%
CTAAAGCTCCTGCATACGCA+GGG - chr5.2:46483538-46483557 None:intergenic 50.0%
GAACCTGTACCGGATACTGA+GGG - chr5.2:46486396-46486415 None:intergenic 50.0%
GATTCTGAGCAAGTCTGCGA+AGG - chr5.2:46485186-46485205 None:intergenic 50.0%
GCAGCAGCTGATGTACAACA+AGG + chr5.2:46483906-46483925 MS.gene042636:CDS 50.0%
GCTTCAACGAGTACGTCAAC+AGG + chr5.2:46485428-46485447 MS.gene042636:CDS 50.0%
GGATGCTTTATCTCACGGCA+TGG + chr5.2:46486329-46486348 MS.gene042636:CDS 50.0%
GGGAATAGCTTCCTTGCCTT+TGG + chr5.2:46483927-46483946 MS.gene042636:CDS 50.0%
GTTATGGTTAGCACGCCCAA+GGG + chr5.2:46486866-46486885 MS.gene042636:CDS 50.0%
GTTGATGCTCGTCAACCCAA+TGG - chr5.2:46485736-46485755 None:intergenic 50.0%
TCAGTATCCGGTACAGGTTC+CGG + chr5.2:46486396-46486415 MS.gene042636:CDS 50.0%
TCTTCAGCAGTCTACTCAGC+AGG + chr5.2:46486302-46486321 MS.gene042636:CDS 50.0%
TGACGTGGAATACGCCCATT+GGG + chr5.2:46485718-46485737 MS.gene042636:CDS 50.0%
TTGACGTGGAATACGCCCAT+TGG + chr5.2:46485717-46485736 MS.gene042636:CDS 50.0%
TTTCAGTTAACGGCTCGAGG+TGG - chr5.2:46486260-46486279 None:intergenic 50.0%
! AAAAAAACACTGGGCTGGGC+TGG - chr5.2:46484115-46484134 None:intergenic 50.0%
! GACTTGTTTGAGACAGGGTG+TGG + chr5.2:46484078-46484097 MS.gene042636:intron 50.0%
! TGCAGGAGCTTTAGTGTACC+GGG + chr5.2:46483544-46483563 MS.gene042636:intron 50.0%
!! AGCTTGGCCTTGTAAGCTGA+AGG + chr5.2:46483607-46483626 MS.gene042636:intron 50.0%
ACACCCTCAGTATCCGGTAC+AGG + chr5.2:46486390-46486409 MS.gene042636:CDS 55.0%
ACTACTTGGCGGAGAAGGGA+AGG - chr5.2:46486665-46486684 None:intergenic 55.0%
ACTTGCTCAGAATCGCGAGG+CGG + chr5.2:46485192-46485211 MS.gene042636:CDS 55.0%
CATACGCAGGGTCCAGGAAA+GGG - chr5.2:46483526-46483545 None:intergenic 55.0%
CGTTATGGTTAGCACGCCCA+AGG + chr5.2:46486865-46486884 MS.gene042636:CDS 55.0%
CTACTTGGCGGAGAAGGGAA+GGG - chr5.2:46486664-46486683 None:intergenic 55.0%
GAACAAGCTTGCACTCCTGG+AGG + chr5.2:46486458-46486477 MS.gene042636:CDS 55.0%
GAAGAGCCGGTTACGGAAGA+AGG + chr5.2:46485219-46485238 MS.gene042636:CDS 55.0%
GACGACACGTCAGACTGCAA+GGG + chr5.2:46486794-46486813 MS.gene042636:CDS 55.0%
GCCACCAACCCTTCTTGCTT+AGG + chr5.2:46482792-46482811 MS.gene042636:CDS 55.0%
GGAACCTGTACCGGATACTG+AGG - chr5.2:46486397-46486416 None:intergenic 55.0%
TCCTCCACACCCTCAGTATC+CGG + chr5.2:46486384-46486403 MS.gene042636:CDS 55.0%
TCTCAAACAAGTCCGCCCCT+GGG - chr5.2:46484071-46484090 None:intergenic 55.0%
TGACGACACGTCAGACTGCA+AGG + chr5.2:46486793-46486812 MS.gene042636:CDS 55.0%
TGTACCGGATACTGAGGGTG+TGG - chr5.2:46486391-46486410 None:intergenic 55.0%
TTAAGCGTGCCTGTGACCTC+GGG - chr5.2:46484265-46484284 None:intergenic 55.0%
! AGGGAAGGGCATACTGGAGT+AGG - chr5.2:46486650-46486669 None:intergenic 55.0%
! CAGACTTGCTCAGAATCGCG+AGG + chr5.2:46485189-46485208 MS.gene042636:CDS 55.0%
! CGTGAGTGTTTGGACTGGAC+CGG - chr5.2:46484174-46484193 None:intergenic 55.0%
! GAATTGGGCTGATTCTGGCG+TGG + chr5.2:46483966-46483985 MS.gene042636:CDS 55.0%
! GGGCGGACTTGTTTGAGACA+GGG + chr5.2:46484073-46484092 MS.gene042636:intron 55.0%
CCAAGTGAGTTACCCAGGGG+CGG + chr5.2:46484056-46484075 MS.gene042636:intron 60.0%
CGGCAAGGAAGAGCCGGTTA+CGG + chr5.2:46485212-46485231 MS.gene042636:CDS 60.0%
GCAGTCTACTCAGCAGGCTG+AGG + chr5.2:46486308-46486327 MS.gene042636:CDS 60.0%
GCATACGCAGGGTCCAGGAA+AGG - chr5.2:46483527-46483546 None:intergenic 60.0%
GTCTCAAACAAGTCCGCCCC+TGG - chr5.2:46484072-46484091 None:intergenic 60.0%
TTCCTGGACCCTGCGTATGC+AGG + chr5.2:46483527-46483546 MS.gene042636:intron 60.0%
! ACCGGATACTGAGGGTGTGG+AGG - chr5.2:46486388-46486407 None:intergenic 60.0%
! CGGAGAAGGGAAGGGCATAC+TGG - chr5.2:46486656-46486675 None:intergenic 60.0%
! GGGGCGGACTTGTTTGAGAC+AGG + chr5.2:46484072-46484091 MS.gene042636:intron 60.0%
! GTGCAGGGTGTTCGGATGCA+GGG + chr5.2:46483869-46483888 MS.gene042636:CDS 60.0%
CCGCCCCTGGGTAACTCACT+TGG - chr5.2:46484059-46484078 None:intergenic 65.0%
CTCAGAATCGCGAGGCGGCA+AGG + chr5.2:46485197-46485216 MS.gene042636:CDS 65.0%
CTCCTGCATACGCAGGGTCC+AGG - chr5.2:46483532-46483551 None:intergenic 65.0%
! AGAGGTAACTCCAGGGGCGC+AGG - chr5.2:46484780-46484799 None:intergenic 65.0%
! AGGTAACTCCAGGGGCGCAG+GGG - chr5.2:46484778-46484797 None:intergenic 65.0%
! GAGGTAACTCCAGGGGCGCA+GGG - chr5.2:46484779-46484798 None:intergenic 65.0%
! GGTGCAGGGTGTTCGGATGC+AGG + chr5.2:46483868-46483887 MS.gene042636:CDS 65.0%
!! AACACTGGGCTGGGCTGGTG+TGG - chr5.2:46484110-46484129 None:intergenic 65.0%
GCGAGGCGGCAAGGAAGAGC+CGG + chr5.2:46485206-46485225 MS.gene042636:CDS 70.0%
!! ACTCCAGGGGCGCAGGGGCG+CGG - chr5.2:46484773-46484792 None:intergenic 80.0%
! GATCCGCGCCCCTGCGCCCC+TGG + chr5.2:46484767-46484786 MS.gene042636:intron 85.0%
!! GGGGCGCAGGGGCGCGGATC+TGG - chr5.2:46484767-46484786 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 46482749 46486893 46482749 ID=MS.gene042636
chr5.2 mRNA 46482749 46486893 46482749 ID=MS.gene042636.t1;Parent=MS.gene042636
chr5.2 exon 46482749 46482813 46482749 ID=MS.gene042636.t1.exon1;Parent=MS.gene042636.t1
chr5.2 CDS 46482749 46482813 46482749 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
chr5.2 exon 46482898 46483001 46482898 ID=MS.gene042636.t1.exon2;Parent=MS.gene042636.t1
chr5.2 CDS 46482898 46483001 46482898 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
chr5.2 exon 46483095 46483174 46483095 ID=MS.gene042636.t1.exon3;Parent=MS.gene042636.t1
chr5.2 CDS 46483095 46483174 46483095 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
chr5.2 exon 46483838 46484059 46483838 ID=MS.gene042636.t1.exon4;Parent=MS.gene042636.t1
chr5.2 CDS 46483838 46484059 46483838 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
chr5.2 exon 46485038 46485097 46485038 ID=MS.gene042636.t1.exon5;Parent=MS.gene042636.t1
chr5.2 CDS 46485038 46485097 46485038 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
chr5.2 exon 46485181 46485240 46485181 ID=MS.gene042636.t1.exon6;Parent=MS.gene042636.t1
chr5.2 CDS 46485181 46485240 46485181 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
chr5.2 exon 46485372 46485449 46485372 ID=MS.gene042636.t1.exon7;Parent=MS.gene042636.t1
chr5.2 CDS 46485372 46485449 46485372 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
chr5.2 exon 46485533 46485584 46485533 ID=MS.gene042636.t1.exon8;Parent=MS.gene042636.t1
chr5.2 CDS 46485533 46485584 46485533 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
chr5.2 exon 46485705 46485976 46485705 ID=MS.gene042636.t1.exon9;Parent=MS.gene042636.t1
chr5.2 CDS 46485705 46485976 46485705 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
chr5.2 exon 46486246 46486494 46486246 ID=MS.gene042636.t1.exon10;Parent=MS.gene042636.t1
chr5.2 CDS 46486246 46486494 46486246 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
chr5.2 exon 46486747 46486893 46486747 ID=MS.gene042636.t1.exon11;Parent=MS.gene042636.t1
chr5.2 CDS 46486747 46486893 46486747 ID=cds.MS.gene042636.t1;Parent=MS.gene042636.t1
Gene Sequence

>MS.gene042636

ATGCAAAGCTTCAAAACAGCTCAATCAAACTCTCAACTCTATTGCCACCAACCCTTCTTGCTTAGGTATGTTTGTCTTGTGTTTTTGTTTTTGCATTCTCTTGTGATAAAAATGGTTCATGCTGTTTTGGTTTTTGATGAAACAAACAGAGGAGAAGACATAAACAGAAACACAATGCGTTTTTCTGATATTGGAGACTTTCATAATTCATCTCCTTTCTTTCCACAACAAGATGCTGTTGATTTAACTTCAAGTAACTTTCTCTTCTTTTACATGTGTTTGTATAGAAAAACTATATAGTATAATTTTATTTATTTCTAATTTAAACTGTTTTTTTTTTTTGCAGGTTGCATGTTTAGTAGTGTAAAGTCGAACAATGTTGTTATTGGTGGTAGTAACATGCAGTATGGGACAACAATTAACATGGTTCATCATCCTCTTTTCTCTCTTAGCTTTTTAGTTCTTAACATAATTTTATTTTAGTCCCTTTGAAAAAATGTAACATAATTAAATTTCTGAGAAAGGATTGTCCACAAATTGTCCTTTAGAATCATTAACTCTTACACTTTAGGTGCTACCTCGGTGAAACGAGTTTAACATTGTAACCTCAAAGTATAGTGTTCAAAATTCAAATTCCCTCTGAGACGGTTGTAAAATGATTATTAGTGTAACACTAGGAAGAATTTATCTTGATTCTGTAATTTTCATGAGGTGTAAAAACAGCCACTTGTGTAAAAATAGGGTAAGCTGCTTACAATACACTAAATGATGGGACCCTTTCCTGGACCCTGCGTATGCAGGAGCTTTAGTGTACCGGGTTGCCCTGTAATTTTCATGAGGTGTTAGCTCGGTTATTAGAGCTTGGCCTTGTAAGCTGAAGGAGCGATGTTCAAATCCCTCTCGGAGATAGTTGTAAAATGATCATACAATACCACTTTATTAATTAATAATAATAATAATTTATCCTTCCCTAATTTTATTAAAAAAAAAGACTTAATAAACTGGGTTTCGCAATTTTTAGTCACCCTAGCGAGTAATAGTGTATCCTTATGTTTTGCGTCTGATTAAGCTTTATTTGTGTTTTCATAGAATGTTGGGTCTGCAGAGATTGCTTCAAATGGTGCAGGGTGTTCGGATGCAGGGCTGCAGCAGCAGCAGCAGCAGCTGATGTACAACAAGGGAATAGCTTCCTTGCCTTTGGGAAATTGTCATGTTGAGAATTGGGCTGATTCTGGCGTGGCTGATAATAATAGCCAACAGACTGATGATACTTCCACTGATATTGATATCGATACCGATGATAAACACCAAGTGAGTTACCCAGGGGCGGACTTGTTTGAGACAGGGTGTGGCAATAGCCACACCAGCCCAGCCCAGTGTTTTTTTTTATTTATTTTTTTATAAAAAAATTGATCTAAACAGCCGGTCCAGTCCAAACACTCACGTTTTCCCTTTATCCCCCTTTCTAATTTAAACACCCAAAATAGTAGTCAATTTATAATTTGAAATTTATCCCGAGGTCACAGGCACGCTTAATGTCAAGGCTTAAAAATAAAAATTGAATAGTCAAGACACTAAGAAATATCAACTTTCATTGTGCAAAGCTTGCGGAAACAAACAAGTACACTATCTTTGATCTTTGATGTGGTGTACAAACCTTTGAAGTTAGTTCAGATTTTGACGGTGGCAACTGCACACATGTTTTCTCAGCTATAAAATATGTCAAGAGTCAATAAGTAAGAAAATGGGTGACTTCCTTAAAAAAAAGGTGATTCAATGATTAAATGTCTGTCTTGTAACATTTATAGAAAAATTTGCTCTTAGAACAGTTAGCAACGATATATATATTTTTTTTTGAGGGAGTTAGTAATGATGAATTTTAGTTTAAACAAATGGATAATAGTTTTTTTTTTTTTTTTTTTTTTTTTGTAATTTTGATTGTTACAACTATTTTTAATATATTTAGTATTATTTAGTTATGAACAAAAAAATTTAGTCCCACTGATATTTTATGTCCAGATCCGCGCCCCTGCGCCCCTGGAGTTACCTCTCCATTTCTCATACATGTTTTGCTTTTAACAGATTACATTACCGATACAAACAATACAATAACTCAATTTACATTTTAGTTTTGTTTTATTCATGCTTTTGTTGTGTTAGAAATTTGCCTCATTTTTAAATACTCGTGTATACACGAGTATCTTTTTGATATTTTGTGAAGATGTTTCTTTTAGATGAGTTGTGTCTGTTTTGCTGACATCTGATAGCGGTTTTTTAACTTTATGTTAGTCCAATAGAGGAAACGGTCACTCTAATAATCAGACCAAGTTCAGAGCTGAAGATCACAAGGTTTTTGTTCTTGATTATTTCTTTGCTATAACATGTATTAACATTTTTGATCTAGTTCCTGATTTGGATGCTCTTTTTTCTAGACCCTTCGCAGACTTGCTCAGAATCGCGAGGCGGCAAGGAAGAGCCGGTTACGGAAGAAGGTAAATGGTCTCGATGGAAATATGGGATTACCTTTTGCATATGTATCTATATTTTTGTTGTAGACCAAGGGGTTACTGAATTCAAAGGATAGTTAAGCTTTAATGATATATATGGATGTTGGTTTTAATAGGCATATGTACAACAGCTCGAGAGCAGTCGAGTCAAGCTTATGCAATTAGAGCAAGAGCTTCAACGAGTACGTCAACAGGTGCATCAAGTTGTTGATTTCTATTTCCAGTTGATGTTTATGTACAATTTTTTTTTTCCTCATGGTTGTGAATTTTAATGCAGGGCATGTGTATTGCAAATCCTGGAGATCAAGGTCATTCTTCTGTTGGAAACGGTAATGAATTGTGGGTGAATAAAGCATGATGCATATATTTTTTACATATACATCAATGTACATCTAAATGATTCTTGTATTACGCCCACCGTGTTGTGATAATGTTTATTGATCATTCAGGTGCTCTAGCATTTGACGTGGAATACGCCCATTGGGTTGACGAGCATCAACGTATGCTCAATGATCTAAGATCGGCGTTAAATTCTCAAATGGGAGATAATGAATTGCATCTGCTTGTCGATGGTGTTATGGCACATCATAATGAGTTATTTAGATTAAAGAGCATAGGGGCAAAGACTGATGTATTTCACATGCTCTATGGGTTATGGAAGACACCAGTAGAAAGATTTTTTATTTGGCATGGTGCATTCCGTTCATCTGAAATTCTCAAGGTGACTGAACAATTTATAGTGCGTTTTTTAATTGGAGAATGAGGAAATTATTATTAATTAAATTGACATTAACGATTATTTTACAACTGTTTCGAGAAATTTTGGACCTTTTCCCTTGTGTTATAAAGTCAAGCTCTTATTGATGAGCTGTCACCTCATAGTCAATTCAACAGTACTTCATTTGCAAGTAACTTGATCACTTGCGTAGAACCATATAATTAATTATTCTTAATTTGTTGATTCTCATATTTGTTTCGTTTATAATTCAGATAGTAAAGAACCACCTCGAGCCGTTAACTGAAAATCAGTTGATGGGAATTTGTAGTCTTCAGCAGTCTACTCAGCAGGCTGAGGATGCTTTATCTCACGGCATGGAAGTATTGAAACAATCTCTTTTAGAGATACTTTCCTCCACACCCTCAGTATCCGGTACAGGTTCCGGAAATGTATCTGATTACATGGGCCAGATGGCATTTGCAATGAACAAGCTTGCACTCCTGGAGGATTTCCTTCACAAGGTAAAATAGATATGCAGTTAATCTTTCTATGCTAAGGGATCTAAATTTTATTATCTCGTAATCTCTTAAACCTTGATGAATGTGAAAAATAGACATATGATGTTCAAACCCTAAGTTACCGTCTTCATGTGAATTTTTTGTTTAACCGTATTCCTACTCCAGTATGCCCTTCCCTTCTCCGCCAAGTAGTTCAAATACATGGTTTTATCGTTTTCAAAAGTTTATAAGTATTGTTGTCATGCTTGTTTTTAGGCTGACCTCTTGAAGCAAGAAACTCTGCAACAGCTGCAAAGAATTTTGACGACACGTCAGACTGCAAGGGCTCTCCTTGTCAGAAATGATTACATTTCAAGACTACGAGCACTTAGTTCGTTATGGTTAGCACGCCCAAGGGAGTAG
Protein sequence

>MS.gene042636.t1

MQSFKTAQSNSQLYCHQPFLLRGEDINRNTMRFSDIGDFHNSSPFFPQQDAVDLTSSCMFSSVKSNNVVIGGSNMQYGTTINMNVGSAEIASNGAGCSDAGLQQQQQQLMYNKGIASLPLGNCHVENWADSGVADNNSQQTDDTSTDIDIDTDDKHQSNRGNGHSNNQTKFRAEDHKTLRRLAQNREAARKSRLRKKAYVQQLESSRVKLMQLEQELQRVRQQGMCIANPGDQGHSSVGNGALAFDVEYAHWVDEHQRMLNDLRSALNSQMGDNELHLLVDGVMAHHNELFRLKSIGAKTDVFHMLYGLWKTPVERFFIWHGAFRSSEILKIVKNHLEPLTENQLMGICSLQQSTQQAEDALSHGMEVLKQSLLEILSSTPSVSGTGSGNVSDYMGQMAFAMNKLALLEDFLHKADLLKQETLQQLQRILTTRQTARALLVRNDYISRLRALSSLWLARPRE