AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042652

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042652.t1 MTR_4g066380 83.591 323 35 3 1 305 1 323 0.0 514
MS.gene042652.t1 MTR_4g066460 80.178 338 28 7 1 308 1 329 1.00e-178 496
MS.gene042652.t1 MTR_4g067010 76.506 332 37 5 1 305 1 318 1.65e-174 486
MS.gene042652.t1 MTR_6g047570 62.500 336 98 7 1 308 1 336 3.44e-133 382
MS.gene042652.t1 MTR_0011s0260 56.486 370 87 8 1 307 1 359 3.66e-117 342
MS.gene042652.t1 MTR_0011s0210 56.604 371 87 8 1 308 1 360 1.43e-116 340
MS.gene042652.t1 MTR_0250s0040 58.249 297 81 7 23 308 1 265 4.84e-104 305
MS.gene042652.t1 MTR_4g098035 48.266 346 137 11 1 308 1 342 1.47e-85 261
MS.gene042652.t1 MTR_0246s0020 57.741 239 82 5 88 308 142 379 3.33e-81 251
MS.gene042652.t1 MTR_0246s0020 55.696 79 28 3 1 77 1 74 1.36e-14 73.9
MS.gene042652.t1 MTR_0246s0050 47.222 324 130 10 22 308 2 321 9.66e-78 240
MS.gene042652.t1 MTR_0246s0020 52.814 231 88 6 88 300 142 369 2.60e-66 212
MS.gene042652.t1 MTR_0246s0020 55.696 79 28 3 1 77 1 74 1.34e-14 73.9
MS.gene042652.t1 MTR_6g047550 53.219 233 76 5 1 200 1 233 8.72e-64 202
MS.gene042652.t1 MTR_5g014520 42.284 324 144 9 17 307 20 333 2.12e-61 198
MS.gene042652.t1 MTR_5g014560 42.122 311 142 12 17 307 15 307 1.73e-54 180
MS.gene042652.t1 MTR_5g014600 35.088 342 157 9 13 303 7 334 2.32e-44 154
MS.gene042652.t1 MTR_4g009540 41.667 204 98 6 122 304 128 331 4.38e-41 145
MS.gene042652.t1 MTR_2g010450 43.784 185 91 3 134 305 168 352 2.40e-39 141
MS.gene042652.t1 MTR_4g097920 39.614 207 109 5 107 302 108 309 2.41e-39 140
MS.gene042652.t1 MTR_4g097920 39.614 207 109 5 107 302 123 324 2.77e-39 140
MS.gene042652.t1 MTR_8g009020 39.896 193 99 3 128 303 130 322 2.13e-38 138
MS.gene042652.t1 MTR_4g097940 39.130 207 110 5 107 302 123 324 3.21e-38 138
MS.gene042652.t1 MTR_2g104550 40.394 203 109 4 117 307 113 315 7.73e-38 137
MS.gene042652.t1 MTR_4g009110 37.872 235 120 7 92 304 120 350 7.92e-38 137
MS.gene042652.t1 MTR_4g092700 39.614 207 103 3 115 305 132 332 9.28e-38 137
MS.gene042652.t1 MTR_4g097950 45.405 185 84 4 138 305 67 251 1.21e-37 134
MS.gene042652.t1 MTR_2g104490 40.306 196 106 4 117 302 112 306 2.00e-36 133
MS.gene042652.t1 MTR_2g104650 41.176 187 94 5 130 301 81 266 1.46e-35 130
MS.gene042652.t1 MTR_5g014640 35.749 207 105 4 116 303 126 323 2.10e-35 130
MS.gene042652.t1 MTR_7g080780 38.350 206 123 3 100 304 127 329 8.02e-34 126
MS.gene042652.t1 MTR_7g080780 38.350 206 123 3 100 304 114 316 9.49e-34 126
MS.gene042652.t1 MTR_2g104560 38.503 187 103 5 130 305 41 226 3.79e-33 122
MS.gene042652.t1 MTR_4g009540 40.984 183 87 6 122 283 128 310 1.24e-32 122
MS.gene042652.t1 MTR_8g009010 35.841 226 108 5 85 299 68 267 1.56e-31 120
MS.gene042652.t1 MTR_8g069740 40.936 171 85 5 127 282 96 265 1.23e-30 116
MS.gene042652.t1 MTR_2g104530 38.235 170 95 4 142 303 106 273 2.63e-30 115
MS.gene042652.t1 MTR_2g104490 33.557 298 150 12 14 283 10 287 1.20e-29 114
MS.gene042652.t1 MTR_2g104500 35.979 189 109 5 127 304 85 272 3.26e-28 110
MS.gene042652.t1 MTR_2g104590 37.297 185 82 7 130 301 58 221 2.87e-26 103
MS.gene042652.t1 MTR_4g009510 37.423 163 95 5 143 302 45 203 3.01e-25 100
MS.gene042652.t1 MTR_7g451650 37.931 145 78 2 164 302 57 195 4.54e-23 94.7
MS.gene042652.t1 MTR_4g009420 39.286 140 75 4 164 302 65 195 2.57e-22 92.8
MS.gene042652.t1 MTR_7g050350 36.691 139 76 2 170 302 1 133 2.26e-21 88.2
MS.gene042652.t1 MTR_7g451650 36.691 139 76 2 170 302 1 133 2.26e-21 88.2
MS.gene042652.t1 MTR_5g014550 44.444 126 52 3 171 282 54 175 1.31e-19 85.5
MS.gene042652.t1 MTR_8g024790 26.891 238 140 8 56 260 187 423 2.92e-15 76.3
MS.gene042652.t1 MTR_8g067280 30.723 166 84 3 133 267 444 609 4.77e-15 75.9
MS.gene042652.t1 MTR_7g451650 35.385 130 72 2 164 287 57 180 8.78e-15 72.0
MS.gene042652.t1 MTR_4g009420 36.800 125 69 4 164 287 65 180 6.23e-14 69.7
MS.gene042652.t1 MTR_1g072320 31.944 144 76 3 141 264 470 611 6.81e-14 72.4
MS.gene042652.t1 MTR_5g030430 29.834 181 74 5 126 267 474 640 2.04e-13 70.9
MS.gene042652.t1 MTR_7g117670 30.519 154 101 2 137 284 394 547 2.44e-13 70.9
MS.gene042652.t1 MTR_8g024770 29.333 150 77 5 115 240 248 392 4.02e-13 69.7
MS.gene042652.t1 MTR_3g030700 32.903 155 89 3 143 282 198 352 6.89e-13 68.9
MS.gene042652.t1 MTR_8g064700 28.249 177 100 6 126 280 227 398 1.63e-12 67.8
MS.gene042652.t1 MTR_3g498695 26.596 188 118 2 127 294 284 471 5.90e-12 66.2
MS.gene042652.t1 MTR_7g096350 36.082 97 52 1 108 194 312 408 8.09e-12 65.9
MS.gene042652.t1 MTR_8g027495 45.333 75 41 0 141 215 458 532 1.21e-11 65.5
MS.gene042652.t1 MTR_3g498695 26.596 188 117 3 127 294 284 470 4.43e-11 63.5
MS.gene042652.t1 MTR_3g104100 30.323 155 88 4 143 277 197 351 8.33e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042652.t1 AT4G37850 41.872 203 97 6 121 305 128 327 3.09e-38 138
MS.gene042652.t1 AT4G37850 41.872 203 97 6 121 305 128 327 3.09e-38 138
MS.gene042652.t1 AT2G22750 33.236 343 172 12 8 306 4 333 1.63e-36 134
MS.gene042652.t1 AT2G22760 40.212 189 97 5 130 303 108 295 5.27e-36 131
MS.gene042652.t1 AT2G22750 32.738 336 170 11 15 306 6 329 5.31e-36 132
MS.gene042652.t1 AT2G22750 33.236 343 171 13 8 306 4 332 3.37e-35 130
MS.gene042652.t1 AT2G22750 37.553 237 118 6 99 306 70 305 2.45e-34 127
MS.gene042652.t1 AT2G22750 37.553 237 117 7 99 306 70 304 3.99e-33 124
MS.gene042652.t1 AT2G22770 38.298 188 91 2 140 302 131 318 1.76e-31 120
MS.gene042652.t1 AT2G22760 40.476 168 85 4 130 283 108 274 5.26e-30 115
MS.gene042652.t1 AT5G46760 31.188 202 100 7 123 287 393 592 2.61e-18 85.5
MS.gene042652.t1 AT4G17880 32.110 218 118 7 78 265 340 557 1.77e-17 83.2
MS.gene042652.t1 AT1G32640 32.298 161 86 5 126 267 433 589 8.53e-15 75.1
MS.gene042652.t1 AT2G46510 38.462 117 52 4 133 238 377 484 1.79e-14 74.3
MS.gene042652.t1 AT1G01260 29.114 158 87 3 131 280 420 560 4.45e-13 70.1
MS.gene042652.t1 AT1G01260 29.114 158 87 3 131 280 420 560 4.45e-13 70.1
MS.gene042652.t1 AT1G01260 29.114 158 87 3 131 280 420 560 4.45e-13 70.1
MS.gene042652.t1 AT4G09820 25.000 300 160 10 20 306 269 516 8.52e-13 68.9
MS.gene042652.t1 AT4G16430 46.575 73 35 1 126 194 301 373 1.37e-12 68.2
MS.gene042652.t1 AT5G46830 54.237 59 23 1 137 191 335 393 2.08e-11 64.7
MS.gene042652.t1 AT5G41315 28.962 183 92 7 132 279 440 619 3.89e-11 64.3
MS.gene042652.t1 AT5G41315 28.962 183 92 7 132 279 437 616 4.10e-11 63.9
MS.gene042652.t1 AT5G41315 28.962 183 92 7 132 279 432 611 4.65e-11 63.9
MS.gene042652.t1 AT3G26744 31.515 165 93 4 142 286 308 472 8.66e-11 62.8
MS.gene042652.t1 AT3G26744 31.515 165 93 4 142 286 308 472 8.66e-11 62.8
MS.gene042652.t1 AT3G26744 31.515 165 93 4 142 286 308 472 8.66e-11 62.8

Find 47 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTTCCTAACCTTAAAA+AGG 0.267726 5.2:+46157864 MS.gene042652:CDS
CAGCAGCTGGTTATCTGATT+TGG 0.268145 5.2:+46157270 MS.gene042652:CDS
GGGGCTTCTGGTTAAAATTA+TGG 0.308732 5.2:+46158719 MS.gene042652:CDS
CAAGGAGCACAAGGGGCTTC+TGG 0.325264 5.2:+46158707 MS.gene042652:CDS
GCTAAGATCATTTGTGGAAA+TGG 0.327969 5.2:-46157566 None:intergenic
TCAAGAACAAAACAAACAAT+TGG 0.334442 5.2:+46157540 MS.gene042652:CDS
CAAGTGGAAGCAAGAGTGTT+AGG 0.334987 5.2:+46158657 MS.gene042652:CDS
ATTCATGAAACAATTGATAA+TGG 0.338552 5.2:+46157598 MS.gene042652:CDS
ATCAGTGTCTCCAACCGAAT+TGG 0.364748 5.2:+46157675 MS.gene042652:CDS
CTGCAAGAGCAATGAAGCTC+TGG 0.379324 5.2:-46157840 None:intergenic
CAAGAACAAAACAAACAATT+GGG 0.390107 5.2:+46157541 MS.gene042652:CDS
ATCGCTGCATATGCATGGTT+TGG 0.407010 5.2:-46158580 None:intergenic
ACTCTTGCTTCCACTTGAAA+TGG 0.409697 5.2:-46158651 None:intergenic
AGAAACATCAAAAGGGTCAT+TGG 0.411401 5.2:+46157717 MS.gene042652:CDS
AATAACAGTGTCTTACCCTT+TGG 0.416567 5.2:+46158774 MS.gene042652:CDS
GCCCCTTGTGCTCCTTGCAT+TGG 0.417499 5.2:-46158701 None:intergenic
TCACAAGTTCCTTTATGCTC+AGG 0.418425 5.2:-46159024 None:intergenic
CATCTGCATCAAGAAAATTC+AGG 0.444660 5.2:-46157480 None:intergenic
TAGGAAAACAAGTGTTGATT+CGG 0.449123 5.2:+46158676 MS.gene042652:CDS
AGCAAAAGGCCTCGTGCTCA+TGG 0.450095 5.2:+46157772 MS.gene042652:CDS
CACTCAACAGAAACATCAAA+AGG 0.454180 5.2:+46157709 MS.gene042652:CDS
TGACTTGCTAAGATCATTTG+TGG 0.465292 5.2:-46157572 None:intergenic
TTGATGATACTTTCATTGCT+CGG 0.501130 5.2:-46157246 None:intergenic
GGTAGCTACCTGAGCAATGA+TGG 0.511294 5.2:-46158817 None:intergenic
TTCTTGATGCAGATGTGGGA+GGG 0.544131 5.2:+46157488 MS.gene042652:CDS
CGACATTACCATCATTGCTC+AGG 0.544333 5.2:+46158809 MS.gene042652:CDS
GTTGATTCGGTTCCAATGCA+AGG 0.545125 5.2:+46158689 MS.gene042652:CDS
GTTCCAATGCAAGGAGCACA+AGG 0.563766 5.2:+46158698 MS.gene042652:CDS
TGCAAGAGCAATGAAGCTCT+GGG 0.565077 5.2:-46157839 None:intergenic
ACTCAACAGAAACATCAAAA+GGG 0.567021 5.2:+46157710 MS.gene042652:CDS
TCTTCATCGCTGCATATGCA+TGG 0.570607 5.2:-46158585 None:intergenic
AAGTATCATCAATCAGCAGC+TGG 0.573007 5.2:+46157257 MS.gene042652:CDS
AAGGCCTCGTGCTCATGGAA+AGG 0.577326 5.2:+46157777 MS.gene042652:CDS
TGTTGCTTCACCATTTCAAG+TGG 0.586046 5.2:+46158641 MS.gene042652:CDS
TTTCTTGATGCAGATGTGGG+AGG 0.588172 5.2:+46157487 MS.gene042652:CDS
GTCGAGTGTAGAATCTCCAA+AGG 0.590011 5.2:-46158790 None:intergenic
TCCAATGCAAGGAGCACAAG+GGG 0.595381 5.2:+46158700 MS.gene042652:CDS
TCATGGAAAGGATCACATCA+TGG 0.611063 5.2:+46157789 MS.gene042652:CDS
TCGAGTGTAGAATCTCCAAA+GGG 0.615421 5.2:-46158789 None:intergenic
CTGCATATGCATGGTTTGGT+CGG 0.617639 5.2:-46158576 None:intergenic
AGGGTACAACCTGAGCATAA+AGG 0.620360 5.2:+46159015 MS.gene042652:CDS
CGAATACAATATATTTGCTG+AGG 0.624364 5.2:+46157450 MS.gene042652:CDS
TGAAGATTCGTCATCATGTG+AGG 0.642706 5.2:+46158602 MS.gene042652:CDS
TTCCAATGCAAGGAGCACAA+GGG 0.644827 5.2:+46158699 MS.gene042652:CDS
AAGAACAAAACAAACAATTG+GGG 0.650416 5.2:+46157542 MS.gene042652:CDS
ACTTGTGAAGAACGTACGCA+TGG 0.661373 5.2:+46159039 MS.gene042652:CDS
TGATCCTTTCCATGAGCACG+AGG 0.668624 5.2:-46157781 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAAAAAATTGTGAT+AGG - chr5.2:46158841-46158860 None:intergenic 10.0%
!!! AGAAAAATCAATTTTATTTA+AGG + chr5.2:46158415-46158434 MS.gene042652:intron 10.0%
!!! ATCATATATTATTTTATAGT+TGG + chr5.2:46158988-46159007 MS.gene042652:intron 10.0%
!!! ATTTTTTTATTTTTTTTTGC+AGG + chr5.2:46157420-46157439 MS.gene042652:intron 10.0%
!!! ATTTTTTTTTGTGTAAATTA+TGG + chr5.2:46158234-46158253 MS.gene042652:intron 10.0%
!!! GTTTATATTTTGAAATATTT+AGG + chr5.2:46158034-46158053 MS.gene042652:intron 10.0%
!!! TCATATATTATTTTATAGTT+GGG + chr5.2:46158989-46159008 MS.gene042652:intron 10.0%
!!! TTTATTATTTTTCTTTTAGA+TGG + chr5.2:46158473-46158492 MS.gene042652:intron 10.0%
!! ATGATTAATATTAGATACAA+GGG - chr5.2:46158973-46158992 None:intergenic 15.0%
!! TATGATTAATATTAGATACA+AGG - chr5.2:46158974-46158993 None:intergenic 15.0%
!! TATGTATATTGTTTATATAG+AGG - chr5.2:46158303-46158322 None:intergenic 15.0%
!!! ATTTTGTTTTCTTTTGATTT+TGG + chr5.2:46158925-46158944 MS.gene042652:intron 15.0%
!!! CTTACATTTAACTTAATTAA+TGG - chr5.2:46157374-46157393 None:intergenic 15.0%
!! ACAAAAGTTGTCAAAAAAAA+TGG - chr5.2:46158147-46158166 None:intergenic 20.0%
!! ATTCATGAAACAATTGATAA+TGG + chr5.2:46157598-46157617 MS.gene042652:CDS 20.0%
!! TACATATGACATATATGAAT+TGG - chr5.2:46157979-46157998 None:intergenic 20.0%
!!! TCATTCTCTTTTGAAATATT+TGG - chr5.2:46157649-46157668 None:intergenic 20.0%
!!! TTACATAACATACCTTTTTA+AGG - chr5.2:46157879-46157898 None:intergenic 20.0%
!!! TTATTTTTTTTTGCAGGAAA+TGG + chr5.2:46157426-46157445 MS.gene042652:intron 20.0%
! AAGAACAAAACAAACAATTG+GGG + chr5.2:46157542-46157561 MS.gene042652:CDS 25.0%
! CAAGAACAAAACAAACAATT+GGG + chr5.2:46157541-46157560 MS.gene042652:CDS 25.0%
! CTTTGACAAATAATTATGAG+CGG + chr5.2:46158329-46158348 MS.gene042652:intron 25.0%
! TAATCAACCATCTTTGAATT+TGG - chr5.2:46157335-46157354 None:intergenic 25.0%
! TCAAGAACAAAACAAACAAT+TGG + chr5.2:46157540-46157559 MS.gene042652:CDS 25.0%
!! ATTCTAAGAGTTAGCTAATA+GGG - chr5.2:46157912-46157931 None:intergenic 25.0%
!! GATTTGGTAAGAAAATCAAA+AGG + chr5.2:46157286-46157305 MS.gene042652:intron 25.0%
!!! ATTATTTTATAGTTGGGTGA+AGG + chr5.2:46158995-46159014 MS.gene042652:intron 25.0%
!!! GTGTTATTTGAACAACTATT+TGG - chr5.2:46158279-46158298 None:intergenic 25.0%
!!! TAACATACCTTTTTAAGGTT+AGG - chr5.2:46157874-46157893 None:intergenic 25.0%
!!! TTATTTTATAGTTGGGTGAA+GGG + chr5.2:46158996-46159015 MS.gene042652:intron 25.0%
AAAAAATTGCACGAAAACCA+AGG - chr5.2:46158221-46158240 None:intergenic 30.0%
ACTCAACAGAAACATCAAAA+GGG + chr5.2:46157710-46157729 MS.gene042652:CDS 30.0%
ACTTTATCTCTTTATTGCCT+TGG + chr5.2:46158201-46158220 MS.gene042652:intron 30.0%
AGATACAAGGGTAAATTTCA+TGG - chr5.2:46158961-46158980 None:intergenic 30.0%
CAAAAACCTCAAAAAGCAAA+AGG + chr5.2:46157758-46157777 MS.gene042652:CDS 30.0%
CATCTTTGAATTTGGAAAAC+AGG - chr5.2:46157327-46157346 None:intergenic 30.0%
TCTTGTTCCTAACCTTAAAA+AGG + chr5.2:46157864-46157883 MS.gene042652:CDS 30.0%
! AATTTTCTTGATGCAGATGT+GGG + chr5.2:46157484-46157503 MS.gene042652:CDS 30.0%
! CGAATACAATATATTTGCTG+AGG + chr5.2:46157450-46157469 MS.gene042652:CDS 30.0%
! CTGTTTTCCAAATTCAAAGA+TGG + chr5.2:46157325-46157344 MS.gene042652:intron 30.0%
! GATTCTAAGAGTTAGCTAAT+AGG - chr5.2:46157913-46157932 None:intergenic 30.0%
! GTGATTCATGTTTTCCAATT+CGG - chr5.2:46157692-46157711 None:intergenic 30.0%
! TTGATGATACTTTCATTGCT+CGG - chr5.2:46157249-46157268 None:intergenic 30.0%
!! TAGGAAAACAAGTGTTGATT+CGG + chr5.2:46158676-46158695 MS.gene042652:CDS 30.0%
!!! TTTTTTCCTCAACTTCCAAA+CGG - chr5.2:46158551-46158570 None:intergenic 30.0%
AATAACAGTGTCTTACCCTT+TGG + chr5.2:46158774-46158793 MS.gene042652:CDS 35.0%
AGAAACATCAAAAGGGTCAT+TGG + chr5.2:46157717-46157736 MS.gene042652:CDS 35.0%
CACTCAACAGAAACATCAAA+AGG + chr5.2:46157709-46157728 MS.gene042652:CDS 35.0%
CATCTGCATCAAGAAAATTC+AGG - chr5.2:46157483-46157502 None:intergenic 35.0%
GAAAGAGCTTAAAAACCGTT+TGG + chr5.2:46158533-46158552 MS.gene042652:CDS 35.0%
GCTAAGATCATTTGTGGAAA+TGG - chr5.2:46157569-46157588 None:intergenic 35.0%
TAAAAACCGTTTGGAAGTTG+AGG + chr5.2:46158542-46158561 MS.gene042652:CDS 35.0%
! GAATTTTCTTGATGCAGATG+TGG + chr5.2:46157483-46157502 MS.gene042652:CDS 35.0%
! TTCATGTTTTCCAATTCGGT+TGG - chr5.2:46157688-46157707 None:intergenic 35.0%
!! TGACTTGCTAAGATCATTTG+TGG - chr5.2:46157575-46157594 None:intergenic 35.0%
AAGTATCATCAATCAGCAGC+TGG + chr5.2:46157257-46157276 MS.gene042652:CDS 40.0%
ACTCTTGCTTCCACTTGAAA+TGG - chr5.2:46158654-46158673 None:intergenic 40.0%
TCACAAGTTCCTTTATGCTC+AGG - chr5.2:46159027-46159046 None:intergenic 40.0%
TCATGGAAAGGATCACATCA+TGG + chr5.2:46157789-46157808 MS.gene042652:CDS 40.0%
TCGAGTGTAGAATCTCCAAA+GGG - chr5.2:46158792-46158811 None:intergenic 40.0%
TGAAGATTCGTCATCATGTG+AGG + chr5.2:46158602-46158621 MS.gene042652:CDS 40.0%
! GGGGCTTCTGGTTAAAATTA+TGG + chr5.2:46158719-46158738 MS.gene042652:CDS 40.0%
! TGTTGCTTCACCATTTCAAG+TGG + chr5.2:46158641-46158660 MS.gene042652:CDS 40.0%
ACTTGTGAAGAACGTACGCA+TGG + chr5.2:46159039-46159058 MS.gene042652:CDS 45.0%
AGGGTACAACCTGAGCATAA+AGG + chr5.2:46159015-46159034 MS.gene042652:CDS 45.0%
ATCAGTGTCTCCAACCGAAT+TGG + chr5.2:46157675-46157694 MS.gene042652:CDS 45.0%
ATCGCTGCATATGCATGGTT+TGG - chr5.2:46158583-46158602 None:intergenic 45.0%
CAGCAGCTGGTTATCTGATT+TGG + chr5.2:46157270-46157289 MS.gene042652:CDS 45.0%
CGACATTACCATCATTGCTC+AGG + chr5.2:46158809-46158828 MS.gene042652:CDS 45.0%
GTCGAGTGTAGAATCTCCAA+AGG - chr5.2:46158793-46158812 None:intergenic 45.0%
TCTTCATCGCTGCATATGCA+TGG - chr5.2:46158588-46158607 None:intergenic 45.0%
TGCAAGAGCAATGAAGCTCT+GGG - chr5.2:46157842-46157861 None:intergenic 45.0%
TTCTTGATGCAGATGTGGGA+GGG + chr5.2:46157488-46157507 MS.gene042652:CDS 45.0%
TTTCTTGATGCAGATGTGGG+AGG + chr5.2:46157487-46157506 MS.gene042652:CDS 45.0%
! TTCCAATGCAAGGAGCACAA+GGG + chr5.2:46158699-46158718 MS.gene042652:CDS 45.0%
!! CAAGTGGAAGCAAGAGTGTT+AGG + chr5.2:46158657-46158676 MS.gene042652:CDS 45.0%
!! CTGCATATGCATGGTTTGGT+CGG - chr5.2:46158579-46158598 None:intergenic 45.0%
!! GTTGATTCGGTTCCAATGCA+AGG + chr5.2:46158689-46158708 MS.gene042652:CDS 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG - chr5.2:46157767-46157786 None:intergenic 45.0%
!!! TTTATATTTTGAAATATTTA+GGG + chr5.2:46158035-46158054 MS.gene042652:intron 5.0%
CTGCAAGAGCAATGAAGCTC+TGG - chr5.2:46157843-46157862 None:intergenic 50.0%
GGTAGCTACCTGAGCAATGA+TGG - chr5.2:46158820-46158839 None:intergenic 50.0%
TGATCCTTTCCATGAGCACG+AGG - chr5.2:46157784-46157803 None:intergenic 50.0%
! GTTCCAATGCAAGGAGCACA+AGG + chr5.2:46158698-46158717 MS.gene042652:CDS 50.0%
! TCCAATGCAAGGAGCACAAG+GGG + chr5.2:46158700-46158719 MS.gene042652:CDS 50.0%
AAGGCCTCGTGCTCATGGAA+AGG + chr5.2:46157777-46157796 MS.gene042652:CDS 55.0%
AGCAAAAGGCCTCGTGCTCA+TGG + chr5.2:46157772-46157791 MS.gene042652:CDS 55.0%
GCCCCTTGTGCTCCTTGCAT+TGG - chr5.2:46158704-46158723 None:intergenic 60.0%
! CAAGGAGCACAAGGGGCTTC+TGG + chr5.2:46158707-46158726 MS.gene042652:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 46157229 46159087 46157229 ID=MS.gene042652
chr5.2 mRNA 46157229 46159087 46157229 ID=MS.gene042652.t1;Parent=MS.gene042652
chr5.2 exon 46157229 46157291 46157229 ID=MS.gene042652.t1.exon1;Parent=MS.gene042652.t1
chr5.2 CDS 46157229 46157291 46157229 ID=cds.MS.gene042652.t1;Parent=MS.gene042652.t1
chr5.2 exon 46157442 46157885 46157442 ID=MS.gene042652.t1.exon2;Parent=MS.gene042652.t1
chr5.2 CDS 46157442 46157885 46157442 ID=cds.MS.gene042652.t1;Parent=MS.gene042652.t1
chr5.2 exon 46158492 46158830 46158492 ID=MS.gene042652.t1.exon3;Parent=MS.gene042652.t1
chr5.2 CDS 46158492 46158830 46158492 ID=cds.MS.gene042652.t1;Parent=MS.gene042652.t1
chr5.2 exon 46159007 46159087 46159007 ID=MS.gene042652.t1.exon4;Parent=MS.gene042652.t1
chr5.2 CDS 46159007 46159087 46159007 ID=cds.MS.gene042652.t1;Parent=MS.gene042652.t1
Gene Sequence

>MS.gene042652

ATGGAGGAAATCAACAACCGAGCAATGAAAGTATCATCAATCAGCAGCTGGTTATCTGATTTGGTAAGAAAATCAAAAGGCAGTTATTCATCTTTCCTGTTTTCCAAATTCAAAGATGGTTGATTATTAATTAATTCTTTTGCCATTAATTAAGTTAAATGTAAGCTAAGTGAAGCTTATAATCTTATGCTATTTTTTTATTTTTTTTTGCAGGAAATGGACGAATACAATATATTTGCTGAGGAATGCAACCTGAATTTTCTTGATGCAGATGTGGGAGGGTTTCTTTCAGATGACATAGCTAATGTATTTCAAGAACAAAACAAACAATTGGGGTCCATTTCCACAAATGATCTTAGCAAGTCATTCATTCATGAAACAATTGATAATGGTGACAAAATCAATGAATCTCTTTCACCAAATATTTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAACATGAATCACTCAACAGAAACATCAAAAGGGTCATTGGAAAATGAAAAGTTTGAAACAAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGAAAGGATCACATCATGGCTGAGAGAAATCGAAGAGAGAAACTCACCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGGTATGTTATGTAATTTTCACTTACCCTATTAGCTAACTCTTAGAATCATCAATTATCAATCAATCACTTCATCGATAAATACATGTTGCACCAATTCATATATGTCATATGTAAGATTTTGATCACTAATATCTTTAGATGTTTAAAAGTTTATATTTTGAAATATTTAGGGAGACAAATCGAATATCTTATATATTAACATTTCTCTTTACATATGATCAAAGTATGTTATATGAATAAGAAATGATATTTGAACATCCATTTTTTTTGACAACTTTTGTGATAATTTTCTCTCTCATACTCATATTATTTTTTACTTTATCTCTTTATTGCCTTGGTTTTCGTGCAATTTTTTTTTGTGTAAATTATGGTTGTCATATAAGTTGTCAACCAAATAGTTGTTCAAATAACACTCCTCTATATAAACAATATACATAGTAAAACTTTGACAAATAATTATGAGCGGAGAGAGTACAAATATAAGAAAATTAATTACATATTTAATACATTCTTATTTTTCTTTAAAATAAGAAAAATCAATTTTATTTAAGGACAAATCTATCATTTAACATTATTATTTCTAACTCTTTATTATTTTTCTTTTAGATGGACAAGTTATCTGTACTAATTGACACTATCAAATACTTGAAAGAGCTTAAAAACCGTTTGGAAGTTGAGGAAAAAAAGTCACCGACCAAACCATGCATATGCAGCGATGAAGATTCGTCATCATGTGAGGATAACATTGAATGTGTTGTTGCTTCACCATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAGTGTTGATTCGGTTCCAATGCAAGGAGCACAAGGGGCTTCTGGTTAAAATTATGGTCGAAATTCAAAAATTTCAACTATTTGTTGTCAATAACAGTGTCTTACCCTTTGGAGATTCTACACTCGACATTACCATCATTGCTCAGGTAGCTACCTATCACAATTTTTTTTTAATTGTTATTATCTTATAATAAGTAGTTTATTCTAAGTTGTTTTATACAATAATTGCGTGATATATTTATTTTGTTTTCTTTTGATTTTGGTCTTTTTTCTCCATGAAATTTACCCTTGTATCTAATATTAATCATATATTATTTTATAGTTGGGTGAAGGGTACAACCTGAGCATAAAGGAACTTGTGAAGAACGTACGCATGGCATTGTTGAAGTTTACGTCATCATAA
Protein sequence

>MS.gene042652.t1

MEEINNRAMKVSSISSWLSDLEMDEYNIFAEECNLNFLDADVGGFLSDDIANVFQEQNKQLGSISTNDLSKSFIHETIDNGDKINESLSPNISKENETISVSPTELENMNHSTETSKGSLENEKFETKTSKSKRPRAHGKDHIMAERNRREKLTQSFIALAALVPNLKKMDKLSVLIDTIKYLKELKNRLEVEEKKSPTKPCICSDEDSSSCEDNIECVVASPFQVEARVLGKQVLIRFQCKEHKGLLVKIMVEIQKFQLFVVNNSVLPFGDSTLDITIIAQLGEGYNLSIKELVKNVRMALLKFTSS