AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042677

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042677.t1 MTR_5g053450 98.261 575 8 1 1 573 1 575 0.0 1158
MS.gene042677.t1 MTR_7g073530 39.340 394 198 9 104 463 86 472 1.70e-84 272
MS.gene042677.t1 MTR_8g005720 40.580 414 185 9 105 479 92 483 8.53e-79 258
MS.gene042677.t1 MTR_7g073540 32.124 193 87 5 271 463 1 149 3.32e-21 91.3
MS.gene042677.t1 MTR_7g073560 41.905 105 52 2 362 463 21 119 2.58e-17 79.3
MS.gene042677.t1 MTR_7g073610 41.905 105 52 2 362 463 21 119 2.58e-17 79.3
MS.gene042677.t1 MTR_4g007750 30.374 214 109 7 264 464 118 304 2.55e-15 77.4
MS.gene042677.t1 MTR_1g075610 27.830 212 111 6 267 464 126 309 6.05e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042677.t1 AT1G68830 83.301 515 86 0 59 573 48 562 0.0 907
MS.gene042677.t1 AT5G01920 41.191 403 193 7 112 477 96 491 4.01e-88 281
MS.gene042677.t1 AT5G01920 41.191 403 193 7 112 477 96 491 4.01e-88 281
MS.gene042677.t1 AT2G38620 30.986 213 111 7 263 464 55 242 1.38e-15 77.4
MS.gene042677.t1 AT2G38620 27.566 341 178 14 149 464 8 304 1.74e-15 78.2

Find 120 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCCATACTCTCATTTA+AGG 0.110339 5.2:+45546629 None:intergenic
TTGGTGCTTTGTCTTATCTT+TGG 0.201448 5.2:-45550559 MS.gene042677:CDS
CCTGGTGTTGTTCTTGCTTT+TGG 0.208005 5.2:-45550578 MS.gene042677:CDS
AAGTCTTTGGCCAATGAAAA+TGG 0.216825 5.2:+45550811 None:intergenic
CTCCTGAATATTGGCTTATA+TGG 0.234852 5.2:-45549031 MS.gene042677:CDS
TGGTGCTTTGTCTTATCTTT+GGG 0.266282 5.2:-45550558 MS.gene042677:CDS
CGAGCAACACAACAGGATTA+TGG 0.267381 5.2:-45547251 MS.gene042677:CDS
AGGGTTTGATTCTAAGTCTT+TGG 0.275538 5.2:+45550798 None:intergenic
GCCTTTGCCTTGCTTTATAT+CGG 0.279262 5.2:+45547366 None:intergenic
TTGTGCACCAGCCTTCTTCT+TGG 0.291467 5.2:+45546701 None:intergenic
AATATGGCGCTGTAGAAATT+TGG 0.295348 5.2:-45549260 MS.gene042677:CDS
ATTGACGGTTGAATTGTATA+AGG 0.298216 5.2:+45547522 None:intergenic
TTGAAGAAGGCGACTGAATA+TGG 0.307818 5.2:-45549276 MS.gene042677:CDS
CTTTGTGACTCCAATTCCTT+TGG 0.309079 5.2:+45550862 None:intergenic
CAGGTCGAAACATTGATTCT+TGG 0.311234 5.2:-45548648 MS.gene042677:CDS
TACAACTTTCATTCCTCTCT+TGG 0.323203 5.2:+45546564 None:intergenic
AAGAGACTACCAACATTATA+TGG 0.329901 5.2:+45548957 None:intergenic
CATTCCTAAAGAGTTTCTTT+TGG 0.331479 5.2:-45548319 MS.gene042677:CDS
GGATCCAAAAGAAACTCTTT+AGG 0.332998 5.2:+45548315 None:intergenic
TGGTGGTGGTTCATTGTTTG+AGG 0.346610 5.2:+45550778 None:intergenic
TGTGCACCAGCCTTCTTCTT+GGG 0.348907 5.2:+45546702 None:intergenic
CAAGTGGATTATTCAGCTTA+TGG 0.349059 5.2:-45547219 MS.gene042677:CDS
AAGCTAGGGGAGGGATCATT+TGG 0.355239 5.2:-45549725 MS.gene042677:CDS
CAAAGAAGACTCCTGAATAT+TGG 0.362523 5.2:-45549040 MS.gene042677:CDS
CTGCACTCTCTCCAGTCTTA+TGG 0.363671 5.2:-45548067 MS.gene042677:CDS
ATTCAGCTTATGGCAAAATC+AGG 0.382255 5.2:-45547209 MS.gene042677:CDS
ACATTCAAAATAATTGATCT+TGG 0.382791 5.2:-45548375 MS.gene042677:CDS
CTCCATATAAGCCAATATTC+AGG 0.386303 5.2:+45549029 None:intergenic
TTGGATTTAGATGGCGGAAT+AGG 0.392942 5.2:-45547413 MS.gene042677:CDS
CAACACCAACACCTACAAAA+AGG 0.400926 5.2:+45550684 None:intergenic
ACTGTTGCAACCAAAGGAAT+TGG 0.403712 5.2:-45550872 MS.gene042677:CDS
TTTGAGCTGTTGGATTTAGA+TGG 0.405059 5.2:-45547422 MS.gene042677:CDS
AAGCCTTCTTTGTCAAAGTA+AGG 0.405199 5.2:+45547317 None:intergenic
CTTTGACAAAGAAGGCTTGT+TGG 0.405734 5.2:-45547312 MS.gene042677:CDS
ACAAGATTTGCCAAAGGGAT+TGG 0.407482 5.2:-45548619 MS.gene042677:CDS
GCTACACCTGGTGTTGCTCC+TGG 0.415742 5.2:-45550536 MS.gene042677:CDS
CATCCTTACTTTGACAAAGA+AGG 0.421240 5.2:-45547320 MS.gene042677:CDS
GGTGGTGGTTCATTGTTTGA+GGG 0.422407 5.2:+45550779 None:intergenic
ACAACTTTCATTCCTCTCTT+GGG 0.423424 5.2:+45546565 None:intergenic
GGAGAGAGTGCAGTTGCAAC+TGG 0.425506 5.2:+45548077 None:intergenic
TCTTATCTTTGGGCTACACC+TGG 0.433977 5.2:-45550548 MS.gene042677:CDS
TAGGAGAGGCTTTGAGCTGT+TGG 0.438205 5.2:-45547432 MS.gene042677:CDS
TGGCTTATATGGAGGTTTGA+AGG 0.443769 5.2:-45549020 MS.gene042677:CDS
AGTCACACCTCTTTAATTGA+CGG 0.447260 5.2:+45547507 None:intergenic
GGCTTGAATGTTACTGTCCC+TGG 0.447608 5.2:-45550596 MS.gene042677:CDS
GGCTTATATGGAGGTTTGAA+GGG 0.452837 5.2:-45549019 MS.gene042677:CDS
ATTTAGATGGCGGAATAGGA+TGG 0.466045 5.2:-45547409 MS.gene042677:CDS
CTCAACTGGTATTGTGCATA+GGG 0.466971 5.2:-45548532 MS.gene042677:CDS
ATCACCACAAAAGCCATTCA+TGG 0.467695 5.2:-45550737 MS.gene042677:CDS
CTATTATCAGAGCGTAAGCC+AGG 0.468233 5.2:+45547545 None:intergenic
TTAGACGGTCTTCACTCAAC+TGG 0.479359 5.2:-45548546 MS.gene042677:CDS
AATCCATTCACCACCATGAA+TGG 0.480510 5.2:+45550724 None:intergenic
GGCAAAATCAGGAACAGAAA+AGG 0.483650 5.2:-45547198 MS.gene042677:CDS
AAAGCATTTGGTGGAGGAGA+TGG 0.488211 5.2:-45546590 MS.gene042677:CDS
TAACAAACCTTTCTGAAAGT+AGG 0.489012 5.2:+45550467 None:intergenic
CTTGCACTGCATGGTGGTGG+TGG 0.491350 5.2:+45550764 None:intergenic
AAGCCATTCATGGTGGTGAA+TGG 0.493552 5.2:-45550727 MS.gene042677:CDS
CTCGATGTGGCGCTGAACTT+AGG 0.499449 5.2:-45547451 MS.gene042677:CDS
AATAATAATACCTTTGATGA+GGG 0.500325 5.2:+45549671 None:intergenic
GGAAATTGTGCCCAAGAAGA+AGG 0.504841 5.2:-45546712 MS.gene042677:CDS
CTGAATATTGGCTTATATGG+AGG 0.508004 5.2:-45549028 MS.gene042677:CDS
CCAAAAGCAAGAACAACACC+AGG 0.508205 5.2:+45550578 None:intergenic
ACTCAACTGGTATTGTGCAT+AGG 0.510063 5.2:-45548533 MS.gene042677:CDS
TGGTCTAATATTCCTCCAAA+TGG 0.512216 5.2:-45547904 MS.gene042677:intron
AATTCCTTTGGTTGCAACAG+TGG 0.512321 5.2:+45550874 None:intergenic
GTTTAGACCTACTTTCAGAA+AGG 0.516126 5.2:-45550474 MS.gene042677:intron
AGTTTAACCTGCCATAAGAC+TGG 0.523445 5.2:+45548056 None:intergenic
GTGCTCATAATGTACTGCTC+TGG 0.529003 5.2:+45548125 None:intergenic
GAGGTACAAGATTTGCCAAA+GGG 0.534473 5.2:-45548624 MS.gene042677:CDS
ACATTCAAGCCACTAGACTT+AGG 0.534526 5.2:+45550608 None:intergenic
AATTCAACCGTCAATTAAAG+AGG 0.535042 5.2:-45547514 MS.gene042677:CDS
CTGTAGATATCAAATCTGTC+AGG 0.543319 5.2:+45547930 None:intergenic
AATCTTGCACTGCATGGTGG+TGG 0.543569 5.2:+45550761 None:intergenic
CAACTCTTGTTCGCATTAGA+CGG 0.553953 5.2:-45548561 MS.gene042677:CDS
ATTTAATACTCACCATTTGG+AGG 0.558323 5.2:+45547892 None:intergenic
CTTCAGCTCTTAAAGTGCAA+AGG 0.564633 5.2:-45546665 MS.gene042677:CDS
ATTCACTGAAGCTCAACTAC+AGG 0.570689 5.2:-45547168 MS.gene042677:CDS
ACTCTCTCCAGTCTTATGGC+AGG 0.570820 5.2:-45548063 MS.gene042677:intron
TTAGGGAAGAAGCTAGGGGA+GGG 0.571275 5.2:-45549734 MS.gene042677:CDS
CCACACTCCATCACAGTGCA+TGG 0.571570 5.2:+45550656 None:intergenic
ACTGGAGCTGAGGGTGCAGA+TGG 0.578510 5.2:+45548095 None:intergenic
AGATTTGATATCTACAGTAC+TGG 0.579644 5.2:-45547924 MS.gene042677:CDS
ATTGTGCCCAAGAAGAAGGC+TGG 0.580227 5.2:-45546708 MS.gene042677:CDS
CGAAACATTGATTCTTGGTG+AGG 0.582143 5.2:-45548643 MS.gene042677:CDS
TTTAGATGGCGGAATAGGAT+GGG 0.582248 5.2:-45547408 MS.gene042677:CDS
AAAACAGGAAAAGCATTTGG+TGG 0.582619 5.2:-45546599 MS.gene042677:CDS
GAGCTGTTGGATTTAGATGG+CGG 0.583483 5.2:-45547419 MS.gene042677:CDS
CAATAATAATACCTTTGATG+AGG 0.584378 5.2:+45549670 None:intergenic
ACAGGAAAAGCATTTGGTGG+AGG 0.584401 5.2:-45546596 MS.gene042677:CDS
GTGATGAATCTTGCACTGCA+TGG 0.588583 5.2:+45550755 None:intergenic
ATGGCCACTGTTGCAACCAA+AGG 0.589790 5.2:-45550878 MS.gene042677:CDS
GTGACTATGACTTGGTTGCA+TGG 0.590726 5.2:-45547490 MS.gene042677:CDS
TTTAGGGAAGAAGCTAGGGG+AGG 0.593251 5.2:-45549735 MS.gene042677:CDS
TGCAGTTGCAACTGGAGCTG+AGG 0.594722 5.2:+45548085 None:intergenic
AGGTGACTTAGTCTTGAAGA+AGG 0.596316 5.2:-45549289 MS.gene042677:CDS
CATAAGCTGAATAATCCACT+TGG 0.599152 5.2:+45547220 None:intergenic
GCTTATATGGAGGTTTGAAG+GGG 0.600363 5.2:-45549018 MS.gene042677:CDS
ACTCTGCAATAGATCAGCTA+AGG 0.600527 5.2:+45548989 None:intergenic
TGGACTTCCATGCACTGTGA+TGG 0.608649 5.2:-45550663 MS.gene042677:CDS
AAAATCAGGAACAGAAAAGG+AGG 0.609977 5.2:-45547195 MS.gene042677:CDS
GCTGCTACAGACTTGCGAGT+TGG 0.612827 5.2:-45548351 MS.gene042677:CDS
CCATGCACTGTGATGGAGTG+TGG 0.621185 5.2:-45550656 MS.gene042677:CDS
CAATGGTCCGATATAAAGCA+AGG 0.622058 5.2:-45547373 MS.gene042677:CDS
TCCGATATAAAGCAAGGCAA+AGG 0.623569 5.2:-45547367 MS.gene042677:CDS
AGCACACTTCCTAAGTCTAG+TGG 0.625149 5.2:-45550617 MS.gene042677:CDS
TATCTATCATGCAAAATCTG+AGG 0.626573 5.2:-45547286 MS.gene042677:CDS
GCAGTTGCAACTGGAGCTGA+GGG 0.634177 5.2:+45548086 None:intergenic
TCAGGAACAGAAAAGGAGGG+TGG 0.634221 5.2:-45547191 MS.gene042677:CDS
TCAGAGAAAATAATGTTCTG+CGG 0.642515 5.2:+45548501 None:intergenic
TGAGGTACAAGATTTGCCAA+AGG 0.643878 5.2:-45548625 MS.gene042677:CDS
CAAAAGCAAGAACAACACCA+GGG 0.646990 5.2:+45550579 None:intergenic
GAGGAGATGGATCCCAAGAG+AGG 0.662184 5.2:-45546577 MS.gene042677:CDS
AAAGAGGTGTGACTATGACT+TGG 0.672074 5.2:-45547498 MS.gene042677:CDS
ATGAATCTTGCACTGCATGG+TGG 0.677136 5.2:+45550758 None:intergenic
AAAACTGTGGAGCCTCGATG+TGG 0.677269 5.2:-45547464 MS.gene042677:CDS
TGTGGCGCTGAACTTAGGAG+AGG 0.694905 5.2:-45547446 MS.gene042677:CDS
AAATCAGGAACAGAAAAGGA+GGG 0.696429 5.2:-45547194 MS.gene042677:CDS
ATTATGGAGAAGCTGCCAAG+TGG 0.696799 5.2:-45547235 MS.gene042677:CDS
CTAAGTTCAGCGCCACATCG+AGG 0.705406 5.2:+45547452 None:intergenic
ACCACAAAAGCCATTCATGG+TGG 0.707798 5.2:-45550734 MS.gene042677:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATATATTATATTTAT+AGG - chr5.2:45547894-45547913 MS.gene042677:intron 0.0%
!! TATTATTATTGTTATGAATA+TGG - chr5.2:45547792-45547811 MS.gene042677:intron 10.0%
!!! AAACTTTGTTATAAAATTTA+AGG + chr5.2:45548566-45548585 None:intergenic 10.0%
!!! AATCTAAAGAATTTTTTTAT+AGG - chr5.2:45550529-45550548 MS.gene042677:CDS 10.0%
!!! ATCTAAAGAATTTTTTTATA+GGG - chr5.2:45550530-45550549 MS.gene042677:CDS 10.0%
!!! ATTTTTATGAAATAGTATTT+CGG - chr5.2:45547636-45547655 MS.gene042677:intron 10.0%
!! AAAAAAGAATGATCAATAAA+AGG + chr5.2:45550709-45550728 None:intergenic 15.0%
!! AAATTTAAATAGAACTTTCT+CGG + chr5.2:45548712-45548731 None:intergenic 15.0%
!! AATAGAATAGAGATAATTTA+TGG - chr5.2:45547546-45547565 MS.gene042677:CDS 15.0%
!! ATTATTTATAGATTCTCTTA+AGG - chr5.2:45548009-45548028 MS.gene042677:intron 15.0%
!! ATTTCCATTATTAGAAATAT+AGG + chr5.2:45549791-45549810 None:intergenic 15.0%
!! GAGAATCTATAAATAATTAA+TGG + chr5.2:45548006-45548025 None:intergenic 15.0%
!! TCTGATACTATATTAAAATT+TGG - chr5.2:45547479-45547498 MS.gene042677:CDS 15.0%
!! TGATTAATAGATACATTATT+AGG - chr5.2:45549220-45549239 MS.gene042677:CDS 15.0%
!!! CAATTTTGATCATTTTATAT+AGG - chr5.2:45549877-45549896 MS.gene042677:intron 15.0%
!!! TATTTAGTTTTTTTCTATCA+AGG - chr5.2:45547214-45547233 MS.gene042677:CDS 15.0%
!!! TTTAATTTCTATATTAACCA+TGG - chr5.2:45549038-45549057 MS.gene042677:CDS 15.0%
!!! TTTTTATGAAATAGTATTTC+GGG - chr5.2:45547637-45547656 MS.gene042677:intron 15.0%
!! AAATAATTTAGCGTCTATTT+AGG + chr5.2:45547420-45547439 None:intergenic 20.0%
!! AAATCATTTAAACAATGTCA+AGG - chr5.2:45549807-45549826 MS.gene042677:intron 20.0%
!! AAGTCCAAAAACATTAAAAT+AGG + chr5.2:45547927-45547946 None:intergenic 20.0%
!! AATAATAATACCTTTGATGA+GGG + chr5.2:45547782-45547801 None:intergenic 20.0%
!! AATCAATTATATGATCAAAC+TGG - chr5.2:45549838-45549857 MS.gene042677:intron 20.0%
!! AATTGTTTAGTTATGACTTA+TGG - chr5.2:45548113-45548132 MS.gene042677:CDS 20.0%
!! ACATTCAAAATAATTGATCT+TGG - chr5.2:45549075-45549094 MS.gene042677:intron 20.0%
!! AGATAATTTATGGATCAAAT+AGG - chr5.2:45547556-45547575 MS.gene042677:intron 20.0%
!! AGTCCAAAAACATTAAAATA+GGG + chr5.2:45547926-45547945 None:intergenic 20.0%
!! ATAGAAATTAAAGCATAACT+TGG + chr5.2:45549030-45549049 None:intergenic 20.0%
!! ATTATTTAATACTCACCATT+TGG + chr5.2:45549564-45549583 None:intergenic 20.0%
!!! AATGAAAATGGATTTTTTGT+CGG + chr5.2:45546630-45546649 None:intergenic 20.0%
!!! ACTGAAATTAATTTTTTTGC+TGG - chr5.2:45550327-45550346 MS.gene042677:intron 20.0%
!!! ATTTAAATTTTATGCTTCCT+TGG - chr5.2:45548722-45548741 MS.gene042677:intron 20.0%
!!! GTTTCCTATATTTCTAATAA+TGG - chr5.2:45549784-45549803 MS.gene042677:intron 20.0%
!!! TTTTGCAGTTAAAATGATTA+TGG - chr5.2:45549713-45549732 MS.gene042677:CDS 20.0%
! AAAAACCTTAAATGAGAGTA+TGG - chr5.2:45550816-45550835 MS.gene042677:CDS 25.0%
! AAATTTAGTGACGAAATTGA+AGG - chr5.2:45547588-45547607 MS.gene042677:intron 25.0%
! ACAAACATATCAAAAAAACC+AGG + chr5.2:45546935-45546954 None:intergenic 25.0%
! AGCTCATCAAACAATTTATT+AGG + chr5.2:45547077-45547096 None:intergenic 25.0%
! ATGATGACTATGACAATAAA+AGG + chr5.2:45550604-45550623 None:intergenic 25.0%
! CAATAATAATACCTTTGATG+AGG + chr5.2:45547783-45547802 None:intergenic 25.0%
! TCAACTATGAAGGAAAAAAA+GGG + chr5.2:45550684-45550703 None:intergenic 25.0%
! TGATGACTATGACAATAAAA+GGG + chr5.2:45550603-45550622 None:intergenic 25.0%
! TGGTTATTTATGATCTCTAA+AGG - chr5.2:45548742-45548761 MS.gene042677:intron 25.0%
! TTAGAGATCATAAATAACCA+AGG + chr5.2:45548742-45548761 None:intergenic 25.0%
!! AAGCTATAAGCTCAAATTTT+TGG - chr5.2:45547380-45547399 MS.gene042677:CDS 25.0%
!! ACATGTGCTATTATTAAACA+TGG + chr5.2:45549435-45549454 None:intergenic 25.0%
!! AGAGATTTTCCATATAATGT+TGG - chr5.2:45548484-45548503 MS.gene042677:intron 25.0%
!! GACAAAAAATCCATTTTCAT+TGG - chr5.2:45546629-45546648 MS.gene042677:CDS 25.0%
!! TTATGACTTATGGTACTTTT+TGG - chr5.2:45548123-45548142 MS.gene042677:CDS 25.0%
!! TTTTCATTTACTATTTGCAG+AGG - chr5.2:45548383-45548402 MS.gene042677:CDS 25.0%
!!! ATGAAAATGGATTTTTTGTC+GGG + chr5.2:45546629-45546648 None:intergenic 25.0%
!!! ATTTTCATCCCTCTAAAAAT+AGG + chr5.2:45550512-45550531 None:intergenic 25.0%
!!! GTACCCTATTTTAATGTTTT+TGG - chr5.2:45547920-45547939 MS.gene042677:CDS 25.0%
!!! TGTTAGTTTATAGTTGATAG+CGG - chr5.2:45547140-45547159 MS.gene042677:intron 25.0%
!!! TTTTCATCCCTCTAAAAATA+GGG + chr5.2:45550511-45550530 None:intergenic 25.0%
!!! TTTTGTTTATGGTTTTCTTG+AGG - chr5.2:45548257-45548276 MS.gene042677:intron 25.0%
AAAATGAAGAACCAACTTGT+TGG - chr5.2:45548045-45548064 MS.gene042677:intron 30.0%
AAGAGACTACCAACATTATA+TGG + chr5.2:45548496-45548515 None:intergenic 30.0%
AATTCAACCGTCAATTAAAG+AGG - chr5.2:45549936-45549955 MS.gene042677:intron 30.0%
AGATTTGATATCTACAGTAC+TGG - chr5.2:45549526-45549545 MS.gene042677:intron 30.0%
ATTGACGGTTGAATTGTATA+AGG + chr5.2:45549931-45549950 None:intergenic 30.0%
ATTTAATACTCACCATTTGG+AGG + chr5.2:45549561-45549580 None:intergenic 30.0%
GTATCTAAAGAAATGACATG+TGG + chr5.2:45550368-45550387 None:intergenic 30.0%
GTCAACTATGAAGGAAAAAA+AGG + chr5.2:45550685-45550704 None:intergenic 30.0%
TAAGCGTGAAATAAGTGTTT+GGG + chr5.2:45548667-45548686 None:intergenic 30.0%
TATCACTGTCTTACTTGTTT+GGG - chr5.2:45548295-45548314 MS.gene042677:intron 30.0%
TATCTATCATGCAAAATCTG+AGG - chr5.2:45550164-45550183 MS.gene042677:intron 30.0%
TCAGAGAAAATAATGTTCTG+CGG + chr5.2:45548952-45548971 None:intergenic 30.0%
TCATAGTCATCATCTTCTTA+GGG - chr5.2:45550611-45550630 MS.gene042677:CDS 30.0%
TTAAGCGTGAAATAAGTGTT+TGG + chr5.2:45548668-45548687 None:intergenic 30.0%
TTCTTAGATATGATGAAGTC+AGG - chr5.2:45547829-45547848 MS.gene042677:intron 30.0%
! ATGTTTCGACCTGAAATTTT+TGG + chr5.2:45548795-45548814 None:intergenic 30.0%
! CAGAACATTATTTTCTCTGA+AGG - chr5.2:45548952-45548971 MS.gene042677:intron 30.0%
! CATTCCTAAAGAGTTTCTTT+TGG - chr5.2:45549131-45549150 MS.gene042677:intron 30.0%
! CATTTTATATAGGCATTTCC+TGG - chr5.2:45549887-45549906 MS.gene042677:intron 30.0%
! GCTAGCTTATAAGTATGAAA+TGG - chr5.2:45547167-45547186 MS.gene042677:CDS 30.0%
! GTGCTATTATTAAACATGGA+TGG + chr5.2:45549431-45549450 None:intergenic 30.0%
! TAACAAACCTTTCTGAAAGT+AGG + chr5.2:45546986-45547005 None:intergenic 30.0%
! TTCTTGAGGTAAGGATTTTT+GGG - chr5.2:45548271-45548290 MS.gene042677:intron 30.0%
! TTTATGGTTTTCTTGAGGTA+AGG - chr5.2:45548262-45548281 MS.gene042677:intron 30.0%
! TTTCTTGAGGTAAGGATTTT+TGG - chr5.2:45548270-45548289 MS.gene042677:intron 30.0%
! TTTTTCTATCAAGGCTACAA+AGG - chr5.2:45547223-45547242 MS.gene042677:CDS 30.0%
!! ATAAAAGGTGTCAACTATGA+AGG + chr5.2:45550694-45550713 None:intergenic 30.0%
!! CTATTTGTTATTGCTGAGAA+CGG - chr5.2:45547668-45547687 MS.gene042677:intron 30.0%
!! TTGTTCTTGCTTTTGTTGAA+AGG - chr5.2:45546951-45546970 MS.gene042677:intron 30.0%
!!! CAGCATTTACCATTTTAGTT+TGG - chr5.2:45548341-45548360 MS.gene042677:CDS 30.0%
!!! TACCATTTTAGTTTGGCTTA+CGG - chr5.2:45548348-45548367 MS.gene042677:CDS 30.0%
!!! TCATTCTTTTTTTGCGTTGT+AGG - chr5.2:45550717-45550736 MS.gene042677:CDS 30.0%
!!! TGAAAATGGATTTTTTGTCG+GGG + chr5.2:45546628-45546647 None:intergenic 30.0%
AAAATCAGGAACAGAAAAGG+AGG - chr5.2:45550255-45550274 MS.gene042677:intron 35.0%
AAAGTCATCTGAAGATACCT+TGG + chr5.2:45549159-45549178 None:intergenic 35.0%
AAAGTTGTTACGTGACTGAA+AGG + chr5.2:45550471-45550490 None:intergenic 35.0%
AAATCAGGAACAGAAAAGGA+GGG - chr5.2:45550256-45550275 MS.gene042677:intron 35.0%
AAGCCTTCTTTGTCAAAGTA+AGG + chr5.2:45550136-45550155 None:intergenic 35.0%
AAGTCTTTGGCCAATGAAAA+TGG + chr5.2:45546642-45546661 None:intergenic 35.0%
AATATGGCGCTGTAGAAATT+TGG - chr5.2:45548190-45548209 MS.gene042677:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG + chr5.2:45550425-45550444 None:intergenic 35.0%
AGGGTTTGATTCTAAGTCTT+TGG + chr5.2:45546655-45546674 None:intergenic 35.0%
AGTCACACCTCTTTAATTGA+CGG + chr5.2:45549946-45549965 None:intergenic 35.0%
ATAAGCTCGTTAGAAAGTGA+CGG - chr5.2:45547316-45547335 MS.gene042677:CDS 35.0%
ATCACTGTCTTACTTGTTTG+GGG - chr5.2:45548296-45548315 MS.gene042677:intron 35.0%
ATTCAGCTTATGGCAAAATC+AGG - chr5.2:45550241-45550260 MS.gene042677:intron 35.0%
CAAAGAAGACTCCTGAATAT+TGG - chr5.2:45548410-45548429 MS.gene042677:intron 35.0%
CATAAGCTGAATAATCCACT+TGG + chr5.2:45550233-45550252 None:intergenic 35.0%
CATAGTCATCATCTTCTTAG+GGG - chr5.2:45550612-45550631 MS.gene042677:CDS 35.0%
CATCCTTACTTTGACAAAGA+AGG - chr5.2:45550130-45550149 MS.gene042677:intron 35.0%
CTATATTAACCATGGTCTCA+GGG - chr5.2:45549046-45549065 MS.gene042677:CDS 35.0%
CTCATCCATACTCTCATTTA+AGG + chr5.2:45550824-45550843 None:intergenic 35.0%
CTCCATATAAGCCAATATTC+AGG + chr5.2:45548424-45548443 None:intergenic 35.0%
CTGTAGATATCAAATCTGTC+AGG + chr5.2:45549523-45549542 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr5.2:45550420-45550439 None:intergenic 35.0%
GAAGGATTGTAAACAACATG+AGG + chr5.2:45549287-45549306 None:intergenic 35.0%
GGATCCAAAAGAAACTCTTT+AGG + chr5.2:45549138-45549157 None:intergenic 35.0%
GTATCACTGTCTTACTTGTT+TGG - chr5.2:45548294-45548313 MS.gene042677:intron 35.0%
GTCATAGTCATCATCTTCTT+AGG - chr5.2:45550610-45550629 MS.gene042677:CDS 35.0%
GTTTAGACCTACTTTCAGAA+AGG - chr5.2:45546976-45546995 MS.gene042677:intron 35.0%
TAAACAGAAACTTCGATCAG+TGG + chr5.2:45549191-45549210 None:intergenic 35.0%
TACTTGTTTGGGGAAATCAA+AGG - chr5.2:45548306-45548325 MS.gene042677:intron 35.0%
TCTATATTAACCATGGTCTC+AGG - chr5.2:45549045-45549064 MS.gene042677:CDS 35.0%
TGGTCTAATATTCCTCCAAA+TGG - chr5.2:45549546-45549565 MS.gene042677:intron 35.0%
TGGTGCTTTGTCTTATCTTT+GGG - chr5.2:45546892-45546911 MS.gene042677:intron 35.0%
TGTGTTTGTGAGATTTCAGT+TGG - chr5.2:45548075-45548094 MS.gene042677:CDS 35.0%
TTATCAGTCTTTCATCTGTG+AGG - chr5.2:45548603-45548622 MS.gene042677:CDS 35.0%
TTGCTGAGAACGGTTTATTA+TGG - chr5.2:45547678-45547697 MS.gene042677:intron 35.0%
TTTGAGCTGTTGGATTTAGA+TGG - chr5.2:45550028-45550047 MS.gene042677:intron 35.0%
! AAGAGTTTCTTTTGGATCCA+AGG - chr5.2:45549139-45549158 MS.gene042677:intron 35.0%
! GAGAGAGAGTGTAATAGATT+AGG + chr5.2:45547055-45547074 None:intergenic 35.0%
! GCGTCTATTTAGGATCTATT+TGG + chr5.2:45547410-45547429 None:intergenic 35.0%
! TCTTGAGGTAAGGATTTTTG+GGG - chr5.2:45548272-45548291 MS.gene042677:intron 35.0%
! TTGGTGCTTTGTCTTATCTT+TGG - chr5.2:45546891-45546910 MS.gene042677:intron 35.0%
! TTTTCTCTTTCCAATCCCTT+TGG + chr5.2:45548844-45548863 None:intergenic 35.0%
!! AAAACAGGAAAAGCATTTGG+TGG - chr5.2:45550851-45550870 MS.gene042677:CDS 35.0%
!! AAGACTGATAATTGATTCGC+TGG + chr5.2:45548594-45548613 None:intergenic 35.0%
!! AGCTGTGCAGATTTTGTTTA+TGG - chr5.2:45548246-45548265 MS.gene042677:intron 35.0%
!! CAAGTGGATTATTCAGCTTA+TGG - chr5.2:45550231-45550250 MS.gene042677:intron 35.0%
!! CTCCTGAATATTGGCTTATA+TGG - chr5.2:45548419-45548438 MS.gene042677:intron 35.0%
!! CTGAATATTGGCTTATATGG+AGG - chr5.2:45548422-45548441 MS.gene042677:intron 35.0%
!! GCAAAAACAGGAAAAGCATT+TGG - chr5.2:45550848-45550867 MS.gene042677:CDS 35.0%
!! TGAGATTTCAGTTGGTCTTT+GGG - chr5.2:45548083-45548102 MS.gene042677:CDS 35.0%
!!! GGCAGGATGATTTTGTTTTA+GGG - chr5.2:45547699-45547718 MS.gene042677:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr5.2:45550420-45550439 MS.gene042677:intron 35.0%
!!! TGGCAGGATGATTTTGTTTT+AGG - chr5.2:45547698-45547717 MS.gene042677:intron 35.0%
!!! TTGTTTTAGGGAAGAAGCTA+GGG - chr5.2:45547711-45547730 MS.gene042677:intron 35.0%
!!! TTTGTTTTAGGGAAGAAGCT+AGG - chr5.2:45547710-45547729 MS.gene042677:intron 35.0%
AAGCTCATTTGACTCCGTTT+GGG + chr5.2:45547344-45547363 None:intergenic 40.0%
AATCCATTCACCACCATGAA+TGG + chr5.2:45546729-45546748 None:intergenic 40.0%
AATTCCTTTGGTTGCAACAG+TGG + chr5.2:45546579-45546598 None:intergenic 40.0%
ACAAGATTTGCCAAAGGGAT+TGG - chr5.2:45548831-45548850 MS.gene042677:intron 40.0%
ACATTCAAGCCACTAGACTT+AGG + chr5.2:45546845-45546864 None:intergenic 40.0%
ACTCAACTGGTATTGTGCAT+AGG - chr5.2:45548917-45548936 MS.gene042677:intron 40.0%
ACTCTGCAATAGATCAGCTA+AGG + chr5.2:45548464-45548483 None:intergenic 40.0%
ACTGTTGCAACCAAAGGAAT+TGG - chr5.2:45546578-45546597 MS.gene042677:CDS 40.0%
AGTTTAACCTGCCATAAGAC+TGG + chr5.2:45549397-45549416 None:intergenic 40.0%
ATCACCACAAAAGCCATTCA+TGG - chr5.2:45546713-45546732 MS.gene042677:CDS 40.0%
ATGAAGTCAGGATATGAGCT+GGG - chr5.2:45547841-45547860 MS.gene042677:intron 40.0%
ATTCACTGAAGCTCAACTAC+AGG - chr5.2:45550282-45550301 MS.gene042677:intron 40.0%
CAAAAGCAAGAACAACACCA+GGG + chr5.2:45546874-45546893 None:intergenic 40.0%
CAACACCAACACCTACAAAA+AGG + chr5.2:45546769-45546788 None:intergenic 40.0%
CAACTCTTGTTCGCATTAGA+CGG - chr5.2:45548889-45548908 MS.gene042677:intron 40.0%
CAATGGTCCGATATAAAGCA+AGG - chr5.2:45550077-45550096 MS.gene042677:intron 40.0%
CACATGCTATACCAACAAGT+TGG + chr5.2:45548059-45548078 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + chr5.2:45550426-45550445 None:intergenic 40.0%
CTAACTTGAGTCGACAAAAC+AGG - chr5.2:45547509-45547528 MS.gene042677:CDS 40.0%
CTCAACTGGTATTGTGCATA+GGG - chr5.2:45548918-45548937 MS.gene042677:intron 40.0%
CTTCAGCTCTTAAAGTGCAA+AGG - chr5.2:45550785-45550804 MS.gene042677:CDS 40.0%
CTTCCTAACTTGAGTCATCA+AGG + chr5.2:45549248-45549267 None:intergenic 40.0%
CTTTGACAAAGAAGGCTTGT+TGG - chr5.2:45550138-45550157 MS.gene042677:intron 40.0%
CTTTGTGACTCCAATTCCTT+TGG + chr5.2:45546591-45546610 None:intergenic 40.0%
GAGGTACAAGATTTGCCAAA+GGG - chr5.2:45548826-45548845 MS.gene042677:intron 40.0%
GCCTTTGCCTTGCTTTATAT+CGG + chr5.2:45550087-45550106 None:intergenic 40.0%
GCTTATATGGAGGTTTGAAG+GGG - chr5.2:45548432-45548451 MS.gene042677:intron 40.0%
GGCAAAATCAGGAACAGAAA+AGG - chr5.2:45550252-45550271 MS.gene042677:intron 40.0%
GGCTTATATGGAGGTTTGAA+GGG - chr5.2:45548431-45548450 MS.gene042677:intron 40.0%
TAAGCTCATTTGACTCCGTT+TGG + chr5.2:45547345-45547364 None:intergenic 40.0%
TCCGATATAAAGCAAGGCAA+AGG - chr5.2:45550083-45550102 MS.gene042677:intron 40.0%
TGAGAACGGTTTATTATGGC+AGG - chr5.2:45547682-45547701 MS.gene042677:intron 40.0%
TGAGGTACAAGATTTGCCAA+AGG - chr5.2:45548825-45548844 MS.gene042677:intron 40.0%
TGCCGTAAGCCAAACTAAAA+TGG + chr5.2:45548353-45548372 None:intergenic 40.0%
TGGCTTATATGGAGGTTTGA+AGG - chr5.2:45548430-45548449 MS.gene042677:intron 40.0%
TTGAAGAAGGCGACTGAATA+TGG - chr5.2:45548174-45548193 MS.gene042677:intron 40.0%
! AAAGAGGTGTGACTATGACT+TGG - chr5.2:45549952-45549971 MS.gene042677:intron 40.0%
! ATGGGAACTTTTGACGTCAA+TGG - chr5.2:45550060-45550079 MS.gene042677:intron 40.0%
! CACAACCTTTTTGTAGGTGT+TGG - chr5.2:45546761-45546780 MS.gene042677:intron 40.0%
! CAGTCTTGTATTTGTCAACG+AGG + chr5.2:45549682-45549701 None:intergenic 40.0%
! GATCCTTGATGACTCAAGTT+AGG - chr5.2:45549242-45549261 MS.gene042677:CDS 40.0%
! GTGATGGTGCCAAAAATTTC+AGG - chr5.2:45548783-45548802 MS.gene042677:intron 40.0%
! TACCTTTGATGAGGGCTTTT+TGG + chr5.2:45547774-45547793 None:intergenic 40.0%
! TCAGCTCACAACCTTTTTGT+AGG - chr5.2:45546755-45546774 MS.gene042677:intron 40.0%
! TGCAGCATATCTGAAATGGA+AGG + chr5.2:45549305-45549324 None:intergenic 40.0%
!! AGGTGACTTAGTCTTGAAGA+AGG - chr5.2:45548161-45548180 MS.gene042677:intron 40.0%
!! ATTTAGATGGCGGAATAGGA+TGG - chr5.2:45550041-45550060 MS.gene042677:intron 40.0%
!! CAGGTCGAAACATTGATTCT+TGG - chr5.2:45548802-45548821 MS.gene042677:intron 40.0%
!! CGAAACATTGATTCTTGGTG+AGG - chr5.2:45548807-45548826 MS.gene042677:intron 40.0%
!! GTGAGATTTCAGTTGGTCTT+TGG - chr5.2:45548082-45548101 MS.gene042677:CDS 40.0%
!! TTGGATTTAGATGGCGGAAT+AGG - chr5.2:45550037-45550056 MS.gene042677:intron 40.0%
!! TTTAGATGGCGGAATAGGAT+GGG - chr5.2:45550042-45550061 MS.gene042677:intron 40.0%
!!! AAATTTTTGGCACCATCACC+GGG + chr5.2:45548782-45548801 None:intergenic 40.0%
!!! ACTTTTTGGTTCTCACTGGA+AGG - chr5.2:45548137-45548156 MS.gene042677:CDS 40.0%
!!! CAAGGCTCCCTATTTTTAGA+GGG - chr5.2:45550501-45550520 MS.gene042677:CDS 40.0%
!!! CTGTTTTGTCGACTCAAGTT+AGG + chr5.2:45547511-45547530 None:intergenic 40.0%
!!! CTTTTTGTAGGTGTTGGTGT+TGG - chr5.2:45546767-45546786 MS.gene042677:intron 40.0%
!!! GAAATTTTTGGCACCATCAC+CGG + chr5.2:45548783-45548802 None:intergenic 40.0%
!!! GATTTTTTGTCGGGGTTGTA+GGG + chr5.2:45546620-45546639 None:intergenic 40.0%
!!! GTTTTTTCGAGCAACACAAC+AGG - chr5.2:45550192-45550211 MS.gene042677:intron 40.0%
!!! TGGTACTTTTTGGTTCTCAC+TGG - chr5.2:45548133-45548152 MS.gene042677:CDS 40.0%
!!! TGTTTTAGGGAAGAAGCTAG+GGG - chr5.2:45547712-45547731 MS.gene042677:intron 40.0%
AAAAAACCAGGAGCAACACC+AGG + chr5.2:45546923-45546942 None:intergenic 45.0%
ACAACTTTACCGTTGCACCA+AGG - chr5.2:45550483-45550502 MS.gene042677:CDS 45.0%
ACCACAAAAGCCATTCATGG+TGG - chr5.2:45546716-45546735 MS.gene042677:intron 45.0%
AGAAAGTGACGGTTCCCAAA+CGG - chr5.2:45547327-45547346 MS.gene042677:CDS 45.0%
AGAAATGACATGTGGCCATC+TGG + chr5.2:45550360-45550379 None:intergenic 45.0%
AGCACACTTCCTAAGTCTAG+TGG - chr5.2:45546833-45546852 MS.gene042677:intron 45.0%
AGCCAAAAAGCCCTCATCAA+AGG - chr5.2:45547769-45547788 MS.gene042677:intron 45.0%
ATGAATCTTGCACTGCATGG+TGG + chr5.2:45546695-45546714 None:intergenic 45.0%
ATTATGGAGAAGCTGCCAAG+TGG - chr5.2:45550215-45550234 MS.gene042677:intron 45.0%
CCAAAAGCAAGAACAACACC+AGG + chr5.2:45546875-45546894 None:intergenic 45.0%
CGAGCAACACAACAGGATTA+TGG - chr5.2:45550199-45550218 MS.gene042677:intron 45.0%
CTATTATCAGAGCGTAAGCC+AGG + chr5.2:45549908-45549927 None:intergenic 45.0%
CTGGTGCAGCATATCTGAAA+TGG + chr5.2:45549309-45549328 None:intergenic 45.0%
GAAACTTCGATCAGTGGAGT+AGG + chr5.2:45549185-45549204 None:intergenic 45.0%
GAGCTGTTGGATTTAGATGG+CGG - chr5.2:45550031-45550050 MS.gene042677:intron 45.0%
GATGAAGTCAGGATATGAGC+TGG - chr5.2:45547840-45547859 MS.gene042677:intron 45.0%
GGAAATTGTGCCCAAGAAGA+AGG - chr5.2:45550738-45550757 MS.gene042677:CDS 45.0%
GGTTGCATGGAGAAAAACTG+TGG - chr5.2:45549973-45549992 MS.gene042677:intron 45.0%
GTGATGAATCTTGCACTGCA+TGG + chr5.2:45546698-45546717 None:intergenic 45.0%
GTGCTCATAATGTACTGCTC+TGG + chr5.2:45549328-45549347 None:intergenic 45.0%
GTTACGTGACTGAAAGGTCA+CGG + chr5.2:45550465-45550484 None:intergenic 45.0%
TCTTATCTTTGGGCTACACC+TGG - chr5.2:45546902-45546921 MS.gene042677:intron 45.0%
TGAAGTCAGGATATGAGCTG+GGG - chr5.2:45547842-45547861 MS.gene042677:intron 45.0%
TGGATGAGCTCAGCAAAAAC+AGG - chr5.2:45550836-45550855 MS.gene042677:CDS 45.0%
TTACGTGACTGAAAGGTCAC+GGG + chr5.2:45550464-45550483 None:intergenic 45.0%
TTAGACGGTCTTCACTCAAC+TGG - chr5.2:45548904-45548923 MS.gene042677:intron 45.0%
! AAAGCATTTGGTGGAGGAGA+TGG - chr5.2:45550860-45550879 MS.gene042677:CDS 45.0%
! AAGCCATTCATGGTGGTGAA+TGG - chr5.2:45546723-45546742 MS.gene042677:intron 45.0%
! ACCACCATGAATGGCTTTTG+TGG + chr5.2:45546720-45546739 None:intergenic 45.0%
! CCTCTAAAAATAGGGAGCCT+TGG + chr5.2:45550503-45550522 None:intergenic 45.0%
! GGTGGTGGTTCATTGTTTGA+GGG + chr5.2:45546674-45546693 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr5.2:45550431-45550450 MS.gene042677:intron 45.0%
!! ACAGGAAAAGCATTTGGTGG+AGG - chr5.2:45550854-45550873 MS.gene042677:CDS 45.0%
!! GTGACTATGACTTGGTTGCA+TGG - chr5.2:45549960-45549979 MS.gene042677:intron 45.0%
!! TGGTGGTGGTTCATTGTTTG+AGG + chr5.2:45546675-45546694 None:intergenic 45.0%
!! TTTGGTTCTCACTGGAAGGA+AGG - chr5.2:45548141-45548160 MS.gene042677:intron 45.0%
!!! AATTTTTGGCACCATCACCG+GGG + chr5.2:45548781-45548800 None:intergenic 45.0%
!!! CCAAGGCTCCCTATTTTTAG+AGG - chr5.2:45550500-45550519 MS.gene042677:CDS 45.0%
!!! CCTGGTGTTGTTCTTGCTTT+TGG - chr5.2:45546872-45546891 MS.gene042677:intron 45.0%
!!! GGATTTTTTGTCGGGGTTGT+AGG + chr5.2:45546621-45546640 None:intergenic 45.0%
AAAACTGTGGAGCCTCGATG+TGG - chr5.2:45549986-45550005 MS.gene042677:intron 50.0%
AAGCTAGGGGAGGGATCATT+TGG - chr5.2:45547725-45547744 MS.gene042677:intron 50.0%
AATCTTGCACTGCATGGTGG+TGG + chr5.2:45546692-45546711 None:intergenic 50.0%
ATGGCCACTGTTGCAACCAA+AGG - chr5.2:45546572-45546591 MS.gene042677:CDS 50.0%
ATTGTGCCCAAGAAGAAGGC+TGG - chr5.2:45550742-45550761 MS.gene042677:CDS 50.0%
CTGCACTCTCTCCAGTCTTA+TGG - chr5.2:45549383-45549402 MS.gene042677:intron 50.0%
GAAGTCAGGATATGAGCTGG+GGG - chr5.2:45547843-45547862 MS.gene042677:intron 50.0%
GGCTTGAATGTTACTGTCCC+TGG - chr5.2:45546854-45546873 MS.gene042677:intron 50.0%
TCAGGAACAGAAAAGGAGGG+TGG - chr5.2:45550259-45550278 MS.gene042677:intron 50.0%
TGGACTTCCATGCACTGTGA+TGG - chr5.2:45546787-45546806 MS.gene042677:intron 50.0%
TGTGCACCAGCCTTCTTCTT+GGG + chr5.2:45550751-45550770 None:intergenic 50.0%
TTAGGGAAGAAGCTAGGGGA+GGG - chr5.2:45547716-45547735 MS.gene042677:intron 50.0%
TTGTGCACCAGCCTTCTTCT+TGG + chr5.2:45550752-45550771 None:intergenic 50.0%
TTTAGGGAAGAAGCTAGGGG+AGG - chr5.2:45547715-45547734 MS.gene042677:intron 50.0%
! AATAGGGAGCCTTGGTGCAA+CGG + chr5.2:45550495-45550514 None:intergenic 50.0%
! ACTCTCTCCAGTCTTATGGC+AGG - chr5.2:45549387-45549406 MS.gene042677:intron 50.0%
! TTTTGTCGGGGTTGTAGGGA+TGG + chr5.2:45546616-45546635 None:intergenic 50.0%
!! TAGGAGAGGCTTTGAGCTGT+TGG - chr5.2:45550018-45550037 MS.gene042677:intron 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr5.2:45550452-45550471 None:intergenic 55.0%
CAGAGCCTCGTTTCGACCAA+GGG + chr5.2:45547463-45547482 None:intergenic 55.0%
CCACACTCCATCACAGTGCA+TGG + chr5.2:45546797-45546816 None:intergenic 55.0%
CTAAGTTCAGCGCCACATCG+AGG + chr5.2:45550001-45550020 None:intergenic 55.0%
GAGGAGATGGATCCCAAGAG+AGG - chr5.2:45550873-45550892 MS.gene042677:CDS 55.0%
GCAGTTGCAACTGGAGCTGA+GGG + chr5.2:45549367-45549386 None:intergenic 55.0%
GCTGCTACAGACTTGCGAGT+TGG - chr5.2:45549099-45549118 MS.gene042677:intron 55.0%
GTTTCGACCAAGGGACACGT+GGG + chr5.2:45547454-45547473 None:intergenic 55.0%
TCAGAGCCTCGTTTCGACCA+AGG + chr5.2:45547464-45547483 None:intergenic 55.0%
TCCATAACCCACGTGTCCCT+TGG - chr5.2:45547444-45547463 MS.gene042677:CDS 55.0%
TGCAGTTGCAACTGGAGCTG+AGG + chr5.2:45549368-45549387 None:intergenic 55.0%
TGTACGAGACCCTGAGACCA+TGG + chr5.2:45549058-45549077 None:intergenic 55.0%
TTTGCTGGACACTCGCCAGA+TGG - chr5.2:45550342-45550361 MS.gene042677:intron 55.0%
! ACCAAGGGACACGTGGGTTA+TGG + chr5.2:45547448-45547467 None:intergenic 55.0%
! CCATGCACTGTGATGGAGTG+TGG - chr5.2:45546794-45546813 MS.gene042677:intron 55.0%
! CTCGATGTGGCGCTGAACTT+AGG - chr5.2:45549999-45550018 MS.gene042677:intron 55.0%
! GGAGAGAGTGCAGTTGCAAC+TGG + chr5.2:45549376-45549395 None:intergenic 55.0%
! TGTGGCGCTGAACTTAGGAG+AGG - chr5.2:45550004-45550023 MS.gene042677:intron 55.0%
AAGGTCGCCAGTATCAGCCC+CGG - chr5.2:45548761-45548780 MS.gene042677:intron 60.0%
ACCATCACCGGGGCTGATAC+TGG + chr5.2:45548771-45548790 None:intergenic 60.0%
CGTGTCCCTTGGTCGAAACG+AGG - chr5.2:45547455-45547474 MS.gene042677:CDS 60.0%
CGTTTCGACCAAGGGACACG+TGG + chr5.2:45547455-45547474 None:intergenic 60.0%
! ACTGGAGCTGAGGGTGCAGA+TGG + chr5.2:45549358-45549377 None:intergenic 60.0%
!! CTTGCACTGCATGGTGGTGG+TGG + chr5.2:45546689-45546708 None:intergenic 60.0%
!! GCTACACCTGGTGTTGCTCC+TGG - chr5.2:45546914-45546933 MS.gene042677:intron 60.0%
GCCAGTATCAGCCCCGGTGA+TGG - chr5.2:45548767-45548786 MS.gene042677:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 45546572 45550900 45546572 ID=MS.gene042677
chr5.2 mRNA 45546572 45550900 45546572 ID=MS.gene042677.t1;Parent=MS.gene042677
chr5.2 exon 45550475 45550900 45550475 ID=MS.gene042677.t1.exon1;Parent=MS.gene042677.t1
chr5.2 CDS 45550475 45550900 45550475 ID=cds.MS.gene042677.t1;Parent=MS.gene042677.t1
chr5.2 exon 45549682 45549768 45549682 ID=MS.gene042677.t1.exon2;Parent=MS.gene042677.t1
chr5.2 CDS 45549682 45549768 45549682 ID=cds.MS.gene042677.t1;Parent=MS.gene042677.t1
chr5.2 exon 45549194 45549313 45549194 ID=MS.gene042677.t1.exon3;Parent=MS.gene042677.t1
chr5.2 CDS 45549194 45549313 45549194 ID=cds.MS.gene042677.t1;Parent=MS.gene042677.t1
chr5.2 exon 45548971 45549069 45548971 ID=MS.gene042677.t1.exon4;Parent=MS.gene042677.t1
chr5.2 CDS 45548971 45549069 45548971 ID=cds.MS.gene042677.t1;Parent=MS.gene042677.t1
chr5.2 exon 45548499 45548667 45548499 ID=MS.gene042677.t1.exon5;Parent=MS.gene042677.t1
chr5.2 CDS 45548499 45548667 45548499 ID=cds.MS.gene042677.t1;Parent=MS.gene042677.t1
chr5.2 exon 45548312 45548405 45548312 ID=MS.gene042677.t1.exon6;Parent=MS.gene042677.t1
chr5.2 CDS 45548312 45548405 45548312 ID=cds.MS.gene042677.t1;Parent=MS.gene042677.t1
chr5.2 exon 45548064 45548157 45548064 ID=MS.gene042677.t1.exon7;Parent=MS.gene042677.t1
chr5.2 CDS 45548064 45548157 45548064 ID=cds.MS.gene042677.t1;Parent=MS.gene042677.t1
chr5.2 exon 45547905 45547961 45547905 ID=MS.gene042677.t1.exon8;Parent=MS.gene042677.t1
chr5.2 CDS 45547905 45547961 45547905 ID=cds.MS.gene042677.t1;Parent=MS.gene042677.t1
chr5.2 exon 45547160 45547573 45547160 ID=MS.gene042677.t1.exon9;Parent=MS.gene042677.t1
chr5.2 CDS 45547160 45547573 45547160 ID=cds.MS.gene042677.t1;Parent=MS.gene042677.t1
chr5.2 exon 45546572 45546733 45546572 ID=MS.gene042677.t1.exon10;Parent=MS.gene042677.t1
chr5.2 CDS 45546572 45546733 45546572 ID=cds.MS.gene042677.t1;Parent=MS.gene042677.t1
Gene Sequence

>MS.gene042677

ATGGCCACTGTTGCAACCAAAGGAATTGGAGTCACAAAGCTCCATCCCTACAACCCCGACAAAAAATCCATTTTCATTGGCCAAAGACTTAGAATCAAACCCTCAAACAATGAACCACCACCACCATGCAGTGCAAGATTCATCACCACAAAAGCCATTCATGGTGGTGAATGGATTCTTGAATCAGCTCACAACCTTTTTGTAGGTGTTGGTGTTGGACTTCCATGCACTGTGATGGAGTGTGGAGATATGATCTATAGAAGCACACTTCCTAAGTCTAGTGGCTTGAATGTTACTGTCCCTGGTGTTGTTCTTGCTTTTGGTGCTTTGTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTTAGACCTACTTTCAGAAAGGTTTGTTAATTTTTCAATATTTTTTTTATTTTAGACTACAACTTCAATTTATTACCTAATCTATTACACTCTCTCTCCTAATAAATTGTTTGATGAGCTATAGAAATATAATAATACTCTGTTTGCTAAAAAATAGTGAATATGTTAGTTTATAGTTGATAGCGGATAAGCTAGCTTATAAGTATGAAATGGCATGAATAATATATATTCAATTAATATTTAGTTTTTTTCTATCAAGGCTACAAAGGTAAAGTTGAGATAAAAAATGTTAAGTTATAAGCTTTTTGAATTAGCTTATCAAGTTAGTAAAAATAAGTTATAAGCTCGTTAGAAAGTGACGGTTCCCAAACGGAGTCAAATGAGCTTATAAGACAAAAGCTATAAGCTATAAGCTCAAATTTTTGGCTTGCCAAATAGATCCTAAATAGACGCTAAATTATTTTCGATCCATAACCCACGTGTCCCTTGGTCGAAACGAGGCTCTGATACTATATTAAAATTTGGATTGAGCCTAACTTGAGTCGACAAAACAGGCTTGATAAACTGAGAATAGAATAGAGATAATTTATGGATCAAATAGGAGAGTGTGAAAATTTAGTGACGAAATTGAAGGTTTACTATTTATTTAATTTTATTGCATTTTTATGAAATAGTATTTCGGGAGTCTGTTCTATTTGTTATTGCTGAGAACGGTTTATTATGGCAGGATGATTTTGTTTTAGGGAAGAAGCTAGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGACACTAGCCAAAAAGCCCTCATCAAAGGTATTATTATTGTTATGAATATGGATTCTTTGCGATCATTCTTAGATATGATGAAGTCAGGATATGAGCTGGGGGAACGTAATCTGAGTCTTGTTATTATATTATAATATATATTATATTTATAGGTTCGTACCCTATTTTAATGTTTTTGGACTTACAATAAACTATTTGCAGTTTTTCATGAATAAGAACATAAATTAATTTCAAGTTAACCATTAATTATTTATAGATTCTCTTAAGGATTTTTAGAAAATAAAATGAAGAACCAACTTGTTGGTATAGCATGTGTTTGTGAGATTTCAGTTGGTCTTTGGGTCGCTTGAATTGTTTAGTTATGACTTATGGTACTTTTTGGTTCTCACTGGAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGCGCTGTAGAAATTTGGATGAATGAACGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGGTAAGGATTTTTGGGGTATCACTGTCTTACTTGTTTGGGGAAATCAAAGGCGTTCTCAGTCTCAGCATTTACCATTTTAGTTTGGCTTACGGCAAAGACTGATATTTTCATTTACTATTTGCAGAGGTCTACAAAGAAGACTCCTGAATATTGGCTTATATGGAGGTTTGAAGGGGATGCTACCTTAGCTGATCTATTGCAGAGTAGAGATTTTCCATATAATGTTGGTAGTCTCTTTAATTAAGATCATTGTACTCGATAAATTAAAAATGTCAGTATTTTAGCCTTAAATTTTATAACAAAGTTTATATACCAGCGAATCAATTATCAGTCTTTCATCTGTGAGGATATGTTTCATATGCTTTAATTCTACTAAAACTTTTTTCCCAAACACTTATTTCACGCTTAAATTCTACTAAAACTTTTCTGTCCGAGAAAGTTCTATTTAAATTTTATGCTTCCTTGGTTATTTATGATCTCTAAAGGTCGCCAGTATCAGCCCCGGTGATGGTGCCAAAAATTTCAGGTCGAAACATTGATTCTTGGTGAGGTACAAGATTTGCCAAAGGGATTGGAAAGAGAAAATAAAATTATTCAAACAATCATAAGACAACTCTTGTTCGCATTAGACGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCGCAGAACATTATTTTCTCTGAAGGTAAAAGAGTCTAAAGATTGCATAACATTTTCAAATTACAAAAGATTCTCAAACCAAGTTATGCTTTAATTTCTATATTAACCATGGTCTCAGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCTGCTACAGACTTGCGAGTTGGCATTAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGGTATCTTCAGATGACTTTAAACCTACTCCACTGATCGAAGTTTCTGTTTAATGATTAGTTGATTAATAGATACATTATTAGGATCCTTGATGACTCAAGTTAGGAAGTATGCGTTGTATTTATCCTCATGTTGTTTACAATCCTTCCATTTCAGATATGCTGCACCAGAGCAGTACATTATGAGCACACAAACTCCATCTGCACCCTCAGCTCCAGTTGCAACTGCACTCTCTCCAGTCTTATGGCAGGTTAAACTTTTCTTACGAACCATCCATGTTTAATAATAGCACATGTTACTTTCATTTGCATCTAATGATGTTGTTCTATGTTTGTCTTCTTGTTTCAAACAGTTGAATCTTCCTGACAGATTTGATATCTACAGTACTGGTCTAATATTCCTCCAAATGGTGAGTATTAAATAATGAGAAAACTGATTATTATCTTTTGTCGCTGTTATATGAATTCATTAGTCAATTTCTGTAATAAATTATATAAGACGTAAATTAGTAGTATAACTACCTCGTTGACAAATACAAGACTGCACTTTCGTATTTTTGCAGTTAAAATGATTATGGCTATGATTTTGATTGTTTTGATCTATCACGATTTTTTTTTATACAATAGTTTCCTATATTTCTAATAATGGAAATCATTTAAACAATGTCAAGGAGTGCTCTAATCAATTATATGATCAAACTGGTATTCTTTATTGCTCACAATTTTGATCATTTTATATAGGCATTTCCTGGCTTACGCTCTGATAATAGCCTTATACAATTCAACCGTCAATTAAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTGGAGCCTCGATGTGGCGCTGAACTTAGGAGAGGCTTTGAGCTGTTGGATTTAGATGGCGGAATAGGATGGGAACTTTTGACGTCAATGGTCCGATATAAAGCAAGGCAAAGGCTGAGTGCTAAAGCAGCGTTAGCTCATCCTTACTTTGACAAAGAAGGCTTGTTGGCATTATCTATCATGCAAAATCTGAGGCTTAAGTTTTTTCGAGCAACACAACAGGATTATGGAGAAGCTGCCAAGTGGATTATTCAGCTTATGGCAAAATCAGGAACAGAAAAGGAGGGTGGATTCACTGAAGCTCAACTACAGGAACTTAGAGTACGCATCTTAATACTGAAATTAATTTTTTTGCTGGACACTCGCCAGATGGCCACATGTCATTTCTTTAGATACATAAGTTTTTGAGAGATGTCACGTAACAGCCTTACCCTGTTTTTTACACAAGAGGCTGTTTCCAGGACTTGAACCCGTGACCTTTCAGTCACGTAACAACTTTACCGTTGCACCAAGGCTCCCTATTTTTAGAGGGATGAAAATCTAAAGAATTTTTTTATAGGGACCAAAATCAAATTTTGTTTATTTTACTGGATCATAAACATATTTAACCCTTTTATTGTCATAGTCATCATCTTCTTAGGGGCAAAAATCAAAATCTGCTTATATGACTGAATCATAAACATGTTCAACCCTTTTTTTCCTTCATAGTTGACACCTTTTATTGATCATTCTTTTTTTGCGTTGTAGGAAATTGTGCCCAAGAAGAAGGCTGGTGCACAAAGAAATGCTCTAGCTTCAGCTCTTAAAGTGCAAAGGAAAATTATAAAAACCTTAAATGAGAGTATGGATGAGCTCAGCAAAAACAGGAAAAGCATTTGGTGGAGGAGATGGATCCCAAGAGAGGAATGA
Protein sequence

>MS.gene042677.t1

MATVATKGIGVTKLHPYNPDKKSIFIGQRLRIKPSNNEPPPPCSARFITTKAIHGGEWILESAHNLFVGVGVGLPCTVMECGDMIYRSTLPKSSGLNVTVPGVVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVTLAKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWRFEGDATLADLLQSRDFPYNVETLILGEVQDLPKGLERENKIIQTIIRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPGLRSDNSLIQFNRQLKRCDYDLVAWRKTVEPRCGAELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGLLALSIMQNLRLKFFRATQQDYGEAAKWIIQLMAKSGTEKEGGFTEAQLQELREIVPKKKAGAQRNALASALKVQRKIIKTLNESMDELSKNRKSIWWRRWIPREE