AlfalfaGEDB | MS.gene042693

M. sativa cultivar XinJiangDaYe / MS.gene042693

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042693.t1	XP_013442386.1	97.9	431	9	0	113	543	227	657	3.60E-242	847.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042693.t1	Q9SX31	67.8	429	133	5	114	540	275	700	8.0e-166	585.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042693.t1	A0A072TGW2	97.9	431	9	0	113	543	227	657	2.6e-242	847.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042693.t1	MTR_0194s0030	97.959	441	9	0	103	543	217	657	0.0	863
MS.gene042693.t1	MTR_7g018890	57.706	558	202	12	5	539	174	720	0.0	592
MS.gene042693.t1	MTR_5g034210	66.077	339	107	3	205	535	54	392	3.03e-164	473
MS.gene042693.t1	MTR_5g034210	66.077	339	107	3	205	535	47	385	3.87e-164	472
MS.gene042693.t1	MTR_5g034210	57.702	409	131	5	169	535	64	472	9.10e-163	472
MS.gene042693.t1	MTR_8g064690	66.261	329	107	3	205	531	299	625	2.52e-158	467
MS.gene042693.t1	MTR_6g088610	60.224	357	130	4	191	535	269	625	1.68e-151	449
MS.gene042693.t1	MTR_3g116450	58.543	357	136	3	191	535	262	618	2.57e-146	436
MS.gene042693.t1	MTR_8g077850	57.817	339	131	3	205	531	325	663	4.87e-140	420
MS.gene042693.t1	MTR_5g019940	56.686	344	140	3	205	539	244	587	9.19e-136	407

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042693.t1	AT1G68690	65.427	457	152	6	86	540	248	700	0.0	619
MS.gene042693.t1	AT1G68690	65.427	457	152	6	86	540	248	700	0.0	619
MS.gene042693.t1	AT1G68690	65.427	457	152	6	86	540	248	700	0.0	619
MS.gene042693.t1	AT1G26150	65.563	453	147	6	94	540	305	754	0.0	600
MS.gene042693.t1	AT5G38560	61.555	463	165	7	89	539	204	665	0.0	583
MS.gene042693.t1	AT1G68690	63.930	402	139	6	86	485	248	645	0.0	526
MS.gene042693.t1	AT1G70460	54.487	468	174	8	87	527	210	665	4.16e-167	491
MS.gene042693.t1	AT1G23540	54.565	460	166	10	120	540	247	702	1.52e-164	484
MS.gene042693.t1	AT1G10620	54.362	447	184	8	96	525	237	680	1.02e-158	469
MS.gene042693.t1	AT3G24550	61.667	360	125	4	191	537	254	613	2.15e-158	466

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Find 156 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTGTTAAAATCGCAGC+TGG	0.552419	5.2:+45318510	MS.gene042693:CDS
AAATTTACCTGATTCAGTTG+AGG	0.584200	5.2:-45317678	None:intergenic
AACTAATTCCTCCGGATTGA+GGG	0.429052	5.2:-45317514	None:intergenic
AACTCGAGCCCTCAATCCGG+AGG	0.634910	5.2:+45317506	MS.gene042693:CDS
AACTGGGGAATTTGAGAGTT+TGG	0.286206	5.2:+45320275	MS.gene042693:CDS
AAGAAATAAGATTGTTTCGG+AGG	0.542523	5.2:+45320604	MS.gene042693:CDS
AAGGTCAACCTGTACTCGAA+TGG	0.547474	5.2:+45318484	MS.gene042693:CDS
AATAAGATTGTTTCGGAGGA+TGG	0.452777	5.2:+45320608	MS.gene042693:CDS
AATGCGGGTTGGTGAAAGCC+AGG	0.509623	5.2:+45320557	MS.gene042693:CDS
AATTAGTTCTGGTGCGATAT+TGG	0.330824	5.2:+45317529	MS.gene042693:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTACCTGATTCAGTTG+AGG	-	chr5.2:45317681-45317700	None:intergenic	30.0%
AAGAAATAAGATTGTTTCGG+AGG	+	chr5.2:45320604-45320623	MS.gene042693:CDS	30.0%
AATAAAGGTAGCATCTTCAA+TGG	-	chr5.2:45320222-45320241	None:intergenic	30.0%
AATAGTGTAGACAGTAGATA+TGG	+	chr5.2:45318635-45318654	MS.gene042693:intron	30.0%
ACACAAAAAAATACAGAGCA+TGG	-	chr5.2:45319558-45319577	None:intergenic	30.0%
ACCGTGTAGATGAAAATAAA+GGG	-	chr5.2:45318348-45318367	None:intergenic	30.0%
AGCCTTAATTTAGTTAATGC+AGG	+	chr5.2:45319598-45319617	MS.gene042693:intron	30.0%
ATATCTCTATGAATAATCCG+AGG	-	chr5.2:45318807-45318826	None:intergenic	30.0%
ATATTGGAATTTGCAGAAGA+AGG	+	chr5.2:45318465-45318484	MS.gene042693:intron	30.0%
ATCTCTATATCAAGGTTTAG+AGG	+	chr5.2:45319784-45319803	MS.gene042693:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	45316789	45320689	45316789	ID=MS.gene042693
chr5.2	mRNA	45316789	45320689	45316789	ID=MS.gene042693.t1;Parent=MS.gene042693
chr5.2	exon	45316789	45317094	45316789	ID=MS.gene042693.t1.exon1;Parent=MS.gene042693.t1
chr5.2	CDS	45316789	45317094	45316789	ID=cds.MS.gene042693.t1;Parent=MS.gene042693.t1
chr5.2	exon	45317494	45317692	45317494	ID=MS.gene042693.t1.exon2;Parent=MS.gene042693.t1
chr5.2	CDS	45317494	45317692	45317494	ID=cds.MS.gene042693.t1;Parent=MS.gene042693.t1
chr5.2	exon	45317961	45318365	45317961	ID=MS.gene042693.t1.exon3;Parent=MS.gene042693.t1
chr5.2	CDS	45317961	45318365	45317961	ID=cds.MS.gene042693.t1;Parent=MS.gene042693.t1
chr5.2	exon	45318481	45318567	45318481	ID=MS.gene042693.t1.exon4;Parent=MS.gene042693.t1
chr5.2	CDS	45318481	45318567	45318481	ID=cds.MS.gene042693.t1;Parent=MS.gene042693.t1
chr5.2	exon	45318799	45318869	45318799	ID=MS.gene042693.t1.exon5;Parent=MS.gene042693.t1
chr5.2	CDS	45318799	45318869	45318799	ID=cds.MS.gene042693.t1;Parent=MS.gene042693.t1
chr5.2	exon	45318958	45319034	45318958	ID=MS.gene042693.t1.exon6;Parent=MS.gene042693.t1
chr5.2	CDS	45318958	45319034	45318958	ID=cds.MS.gene042693.t1;Parent=MS.gene042693.t1
chr5.2	exon	45319157	45319301	45319157	ID=MS.gene042693.t1.exon7;Parent=MS.gene042693.t1
chr5.2	CDS	45319157	45319301	45319157	ID=cds.MS.gene042693.t1;Parent=MS.gene042693.t1
chr5.2	exon	45320246	45320407	45320246	ID=MS.gene042693.t1.exon8;Parent=MS.gene042693.t1
chr5.2	CDS	45320246	45320407	45320246	ID=cds.MS.gene042693.t1;Parent=MS.gene042693.t1
chr5.2	exon	45320510	45320689	45320510	ID=MS.gene042693.t1.exon9;Parent=MS.gene042693.t1
chr5.2	CDS	45320510	45320689	45320510	ID=cds.MS.gene042693.t1;Parent=MS.gene042693.t1

Gene Sequence

>MS.gene042693

ATGTCAGCGGCGTCGCCGTCTCCGGCATCCTCTAATACCATCCAACCACCTTCCTCAGCCACTGTTCCGCCACCGCAACAACCATCAGCTGCACCTCCTCCAGTAACATCACCACCTCTTTCAGCTCCTCCTCCAGCAGTGCCGTCTCCTACTCCGACTTCACCAGCGCCTCGTGCTTCAACTCCGTCGCCGCCTCCTGTAGCTCCTACTCTAACCCCGCCAACACGCCCTCTGCCACCGCCACCACAGTCACCTGTTCCGCCAAGAACCTCGCCTCCACCGGATAATTCACCCCCTCCTCCCACTGTTACACCACCCAGACGTTCACCTCCACCACCCCCCAAAAACTCGTCTCAAACTCCACCTCCTAGGCCACAACCACCATCATCACCACCATTACAACCACCATCATCATCGCCACCACCATTACAACCACCACCATCACCGCCTAGGCCATCCCCGGCACCACCAGTACAACCACCATCATCATTACCATCACCACCACCATTACAACCTCCACCTCCAAAGTCATCACCACCACCATCATCATTACTATCACCACCACCAACATCATCAACCCCTCCTCCTACCAGGCCTATTACACAACCACCTCCACCACCACCATCAAATTCAACAACACCGAGGCTATCTCCTCCAACACCCTCCTCAATCATTCAACTGTCGCCACCTCCTCCACCGCTGCAGAACGGATCAGAAAACTCGAGCCCTCAATCCGGAGGAATTAGTTCTGGTGCGATATTGGCTATTGCTGTGTGTGGTGGAATTATATTTCTTGGCTTCATTGGAGTTGCTATCTGGTGCTTCAGAAGACAAAGCAAAAAGGATTCTTCTAATCATGGTTATGTCATGCCTTCCACTCTTCCCTCCTCCTCAACTGAATCAGGTAAATTTCTTTGCTCCTATTATTTGCAACAACGGACATTGGACACACGATACACAGACACTTTGAATGTAACCACATGTGTGAGTGTAGGTAGTGTTAGGTGTTGGACACTAGACGGTAGACACACGCCTTGAGCCTCAAGTTACTTTTTATGCATATTTGTTGAACCAGTTGTTAACATTCTTATTTTTATCATGATCATACTTTGAAACTTCAATTTCTTACCATTGAATTTGAATCAGTTAAGGTTTGTAAAATTATTGTCCAGATTCATCATTTTTTAAGATACATGCTGCCTCTACTCCTCTTGTAAGCAGTGATGTTGTGCATACACCATCTGATCCTGGTGGTGGAATGGGCCACTCGAGGAACTGGTTTTCATATGAAGAGCTAATCAAGGCCACAAATGGTTTCTCGACTCTGAATCTTTTGGGAGAAGGTGGATTTGGCTCTGTGTATAAAGGAATTTTACCTGATGGGAGAGAGATAGCAGTGAAGCAACTCAAAATTGGTGGAAGTCAAGGGGAGAGAGAATTCAAAGCCGAAGTTGACATTATTAGTCGCATACATCATCGTCATTTGGTTTCATTAGTTGGATACTGCATTCAAGATAACAGAAAAATACTTGTCTATGACTACGTCCCTAACAATACCCTTTATTTTCATCTACACGGTAAATGTAACTCCTTCTCAGTTGGTACATTAACAGATTGTTTCTTACATGAGATTTTTTGAATATTTGAATACTTTTGATTGTGTTGTGTTGAATGAAATATTGGAATTTGCAGAAGAAGGTCAACCTGTACTCGAATGGGAAAAACGTGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTTCATGAAGACTGTAATTACCAATCCTCATTATTTTGTTCTTTGCTCTTGACACAATTGTTGGACACTCTATGATACTGAATAGTGTAGACAGTAGATATGGCTTGTTGGCTAGAAGATTCAATTTGATGCATATAAAAATTGTTAAATATAGATAGATACTTTCAGATGTGGATCAATGTTACATTAGAATTGAGTCAATCGAGCTGACACGACTGATGTTGTTGAATTATGCATATTTCAGGCAATCCTCGGATTATTCATAGAGATATCAAGCCATCAAACATTCTTTTGGATGACAACTATGAAGCTCGTGTAAATGCCATTCCACTTATTCAATGTTTGTTATTGTTTGCTTCACTTATTATATCCAAATCTAAGTACTCCTATTTTTTTGTTATAGGTCGCAGATTTCGGCCTAGCCAAATTAGCTCAGGATGCAAATACACATGTATCGACGCGCGTCATGGGAACTTTTGGGTGGGTATATGCTTATTATTATTTATGCAAACTATTCATTTAGTTAATATTGCATTTAGACTAACAATCTATTGGTTCAAAAAAAAGTGTCAATATTGATTGCCTTTGTTCCCTATTGAAAGGTATGTTGCCCCTGAATATGCATCAAGTGGAAAATTGACTGACAGGTCTGATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTTATTACCGGACGGATGCCCGTAGATCCATCACAAATGGGAGATGAGAGTCTAGTTGAATGGGTATATAAAGATATCAATCTTACTCTCCTAAGTTATGTACTACTATTGCTTTATTATTGCTGATAAACCATTAGTTTCTATTAAACAAATGCTAAGGATCAGAAATTTATTTCATGATTGTGCTTTTCTTTTCTTTGGAAATTTTATCTTTTATTTATAGTGACTCCTGTATAAAAGGACAACAAAATGCCCAATCTTTTGAATCACTGACCTGAGAGGTGAACACATTCTAAGAGAATCAAAGAGAATAAATCCATGCTCTGTATTTTTTTGTGTTCCGTTGTCCAAGGTATATAAGCCTTAATTTAGTTAATGCAGGCACACCAAATGTCCTCGGTTTTCCATGCCTCCGATGTTTGGCAATATTTTTAATGATCAAACAATGAATCTACACTTGAGATGTATGTTTCTAGTGTTTAATTTCTTTTAGCTCTGGAGTATCAGGTCTTGGTCTTAATTTTAGTATGCATATATCAGTGCATATCTCTATATCAAGGTTTAGAGGCACTTGGTAATTTATTGAGTATCATCGTTCATCTTAAACACAAACTGATGAAGACTTAGATACCTGAATATTATTTTGCTATAGTTTTTTTCTTCGTGGATAGCAACATTTGTGTTGACCTTATCATAGTGTGCTGTGTCCACAAACTATGCATGCATACCGGTATTGTCAAACGTGGTTCACGGAAAATAGCGGTTTGTTCGAATTCCACTACACTTTAGTGATATAGCATCGTTATAGCTGTTATTTGGCAACACTATGTACTAAACGGCATATTGCGTAACAATAGAAATTTGTTCAAATTCTGCTACGCTATAGCCGTTATTTGACAACACTAATCCATACATGAGAAATGAGAATATAGAGTCATGTCATATAAATTTGTAAAGGTTAATCATCTTTACTTGAATCGCCATTGAAGATGCTACCTTTATTTCAGGCTCGACCATTGCTTAGTGATGCACTTGAAACTGGGGAATTTGAGAGTTTGGTAGATCCAAAGCTAGGGAAGAACTACATTGATAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTTCGACATTCAGCTTCTAAGAGACCTCGCATGGGACAGGTAAATATTGAAAATAAACAGCAAACATATTAAATCTGAGAGTTTATCAACAAACAAACATGCAAGCTACTGATATTGTTTTTTCTTGATTTCATTTCGTAGGTTGTTAGAGCTTTCGAAAGCTTAGCAACTTCAGATCTAACAAACGGAATGCGGGTTGGTGAAAGCCAGGCATTTGACTCTGCACAACAATCTGAAGAAATAAGATTGTTTCGGAGGATGGCATTTGGTAATCAAAATTATAGCTCCGAATATTTTAATCACTCTAGCTTGCGTCTGTAA

Protein sequence

>MS.gene042693.t1

MSAASPSPASSNTIQPPSSATVPPPQQPSAAPPPVTSPPLSAPPPAVPSPTPTSPAPRASTPSPPPVAPTLTPPTRPLPPPPQSPVPPRTSPPPDNSPPPPTNGSENSSPQSGGISSGAILAIAVCGGIIFLGFIGVAIWCFRRQSKKDSSNHGYVMPSTLPSSSTESDSSFFKIHAASTPLVSSDVVHTPSDPGGGMGHSRNWFSYEELIKATNGFSTLNLLGEGGFGSVYKGILPDGREIAVKQLKIGGSQGEREFKAEVDIISRIHHRHLVSLVGYCIQDNRKILVYDYVPNNTLYFHLHEEGQPVLEWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDDNYEARVADFGLAKLAQDANTHVSTRVMGTFGYVAPEYASSGKLTDRSDVYSFGVVLLELITGRMPVDPSQMGDESLVEWARPLLSDALETGEFESLVDPKLGKNYIDSEMFCMIEVAAACVRHSASKRPRMGQVVRAFESLATSDLTNGMRVGESQAFDSAQQSEEIRLFRRMAFGNQNYSSEYFNHSSLRL