AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042695

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042695.t1 MTR_0194s0050 98.450 387 6 0 1 387 1 387 0.0 790
MS.gene042695.t1 MTR_3g099620 46.222 225 98 5 165 378 97 309 1.13e-54 183
MS.gene042695.t1 MTR_1g082480 47.368 209 99 4 177 381 129 330 7.32e-54 181
MS.gene042695.t1 MTR_7g113830 45.133 226 109 6 166 387 98 312 5.16e-52 176
MS.gene042695.t1 MTR_8g066770 41.241 274 122 7 139 387 50 309 6.94e-52 176
MS.gene042695.t1 MTR_8g024210 53.555 211 79 4 173 382 170 362 1.25e-51 176
MS.gene042695.t1 MTR_1g082480 46.970 198 95 3 177 371 129 319 1.05e-49 171
MS.gene042695.t1 MTR_3g090850 38.434 281 128 7 141 376 46 326 7.53e-49 168
MS.gene042695.t1 MTR_2g022280 45.408 196 97 2 184 379 1 186 4.48e-48 162
MS.gene042695.t1 MTR_5g064950 43.981 216 112 6 165 377 79 288 9.08e-47 162
MS.gene042695.t1 MTR_1g028470 38.053 226 129 1 162 376 65 290 9.34e-47 162
MS.gene042695.t1 MTR_5g064950 45.685 197 99 5 165 359 79 269 3.41e-44 155
MS.gene042695.t1 MTR_8g067280 27.511 229 135 9 159 383 439 640 5.93e-16 80.1
MS.gene042695.t1 MTR_5g030430 26.267 217 131 6 159 369 470 663 6.52e-14 73.6
MS.gene042695.t1 MTR_4g094762 25.500 200 132 4 186 383 293 477 9.41e-13 69.7
MS.gene042695.t1 MTR_1g072320 29.032 155 95 5 186 340 471 610 3.13e-12 68.6
MS.gene042695.t1 MTR_3g498695 28.063 253 136 11 107 356 239 448 4.47e-12 67.8
MS.gene042695.t1 MTR_3g498695 28.063 253 136 11 107 356 239 448 4.63e-12 67.8
MS.gene042695.t1 MTR_5g014560 22.772 202 132 3 175 375 121 299 9.10e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042695.t1 AT3G24140 59.653 404 104 12 31 387 11 402 1.93e-139 403
MS.gene042695.t1 AT3G24140 59.406 404 105 12 31 387 11 402 7.95e-139 402
MS.gene042695.t1 AT3G06120 43.564 202 101 3 184 381 1 193 2.69e-48 163
MS.gene042695.t1 AT1G72210 42.922 219 106 4 174 387 115 319 4.98e-48 166
MS.gene042695.t1 AT1G22490 43.458 214 107 4 173 385 104 304 8.44e-48 165
MS.gene042695.t1 AT1G22490 45.989 187 88 3 173 359 104 277 1.35e-44 157
MS.gene042695.t1 AT1G72210 43.684 190 89 3 174 359 115 290 2.31e-43 153
MS.gene042695.t1 AT2G46810 41.176 204 98 3 177 378 114 297 8.17e-41 146
MS.gene042695.t1 AT2G46810 41.176 204 98 3 177 378 174 357 5.24e-40 145
MS.gene042695.t1 AT4G01460 40.284 211 115 4 174 383 105 305 5.87e-40 144
MS.gene042695.t1 AT4G01460 40.284 211 115 4 174 383 105 305 5.87e-40 144
MS.gene042695.t1 AT2G46810 41.176 204 98 3 177 378 186 369 6.46e-40 145
MS.gene042695.t1 AT5G46690 41.964 224 114 4 173 381 77 299 8.83e-39 142
MS.gene042695.t1 AT2G46810 44.022 184 82 2 177 359 114 277 1.38e-38 141
MS.gene042695.t1 AT3G61950 40.580 207 100 4 174 378 117 302 4.77e-38 139
MS.gene042695.t1 AT3G61950 42.487 193 89 3 174 365 117 288 8.25e-38 138
MS.gene042695.t1 AT3G61950 39.614 207 102 4 174 378 168 353 1.74e-37 139
MS.gene042695.t1 AT3G61950 41.451 193 91 3 174 365 168 339 3.48e-37 138
MS.gene042695.t1 AT5G46690 43.284 201 99 3 173 359 77 276 1.63e-35 132
MS.gene042695.t1 AT5G65320 36.449 214 119 4 174 382 92 293 7.55e-31 119
MS.gene042695.t1 AT5G65320 38.624 189 101 3 174 359 92 268 1.84e-27 110
MS.gene042695.t1 AT5G53210 65.714 70 24 0 182 251 100 169 2.39e-25 105
MS.gene042695.t1 AT5G53210 50.000 74 37 0 289 362 274 347 3.58e-15 76.6
MS.gene042695.t1 AT5G53210 65.714 70 24 0 182 251 100 169 3.40e-25 105
MS.gene042695.t1 AT5G53210 46.591 88 47 0 289 376 274 361 1.87e-18 86.3
MS.gene042695.t1 AT4G17880 27.354 223 126 7 142 361 380 569 5.75e-15 77.0
MS.gene042695.t1 AT1G32640 25.714 245 128 7 126 360 405 605 8.28e-15 76.6
MS.gene042695.t1 AT4G37850 25.573 262 161 6 126 379 90 325 7.25e-13 69.3
MS.gene042695.t1 AT4G37850 25.573 262 161 6 126 379 90 325 7.25e-13 69.3
MS.gene042695.t1 AT3G61950 66.667 42 14 0 174 215 168 209 1.15e-12 67.4
MS.gene042695.t1 AT3G61950 66.667 42 14 0 174 215 168 209 1.15e-12 67.4
MS.gene042695.t1 AT5G46760 24.898 245 150 7 121 361 358 572 2.95e-12 68.6

Find 76 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGATTCTTCGCGGTTTA+AGG 0.091676 5.2:+45307094 None:intergenic
GTGATGCAGTTTGCAGATTT+TGG 0.187925 5.2:-45307128 MS.gene042695:CDS
GGTGATCAAGCTTCTATAAT+TGG 0.199677 5.2:-45305539 MS.gene042695:CDS
TCACTTGTCTTAACAGTTCT+TGG 0.201116 5.2:+45306828 None:intergenic
CACCACTCAACATCAAATTT+TGG 0.284583 5.2:+45307015 None:intergenic
CCTCCTGAAGTTTGTGTTTG+AGG 0.310661 5.2:+45307194 None:intergenic
TCGCGGTTTAAGGCTAATTT+AGG 0.318430 5.2:+45307104 None:intergenic
ACTAGCTTCATCTGGTCATT+TGG 0.371823 5.2:+45305359 None:intergenic
AAGCTAGTTGAGATGGAAAC+TGG 0.382861 5.2:-45305344 MS.gene042695:CDS
GTGATCAAGCTTCTATAATT+GGG 0.386419 5.2:-45305538 MS.gene042695:CDS
AACCAGGCATGAGGGATCTA+AGG 0.393915 5.2:+45306727 None:intergenic
TATAGAATTTGTGAGGGAAT+TGG 0.396789 5.2:-45305510 MS.gene042695:CDS
GATGTAGAAGTGAAACTTCT+AGG 0.406812 5.2:-45305281 MS.gene042695:CDS
GCCTTAAACCGCGAAGAATC+AGG 0.418841 5.2:-45307095 MS.gene042695:CDS
CCATCTCAACTAGCTTCATC+TGG 0.419409 5.2:+45305351 None:intergenic
GGAAACTTGAGAAAATAAAT+CGG 0.433203 5.2:+45307062 None:intergenic
TTTGTGATTCTAGACATTGA+AGG 0.440507 5.2:+45305480 None:intergenic
AAGCACAATCAAAACAAGTT+GGG 0.449296 5.2:-45305436 MS.gene042695:CDS
TGCAGAGAGTAAGTCATGTT+TGG 0.450615 5.2:-45305306 MS.gene042695:CDS
TCTATCTTATTGGTTAAGAC+AGG 0.457469 5.2:+45307041 None:intergenic
TTGAGTGGTGGTGATGGGTT+AGG 0.458608 5.2:-45307002 MS.gene042695:CDS
TATCGAGTTGGCGAAACATC+GGG 0.463450 5.2:-45307251 MS.gene042695:CDS
ATCCTCTCAAGGAGAAGGCC+TGG 0.465771 5.2:-45305239 MS.gene042695:CDS
GTCCTTAGATCCCTCATGCC+TGG 0.466194 5.2:-45306729 MS.gene042695:CDS
AACAAGATCACGAAGAAGCT+CGG 0.483629 5.2:-45306926 MS.gene042695:CDS
CAAAAGAGGAGAAGACTACT+AGG 0.484464 5.2:-45305461 MS.gene042695:CDS
GAAGCACAATCAAAACAAGT+TGG 0.486078 5.2:-45305437 MS.gene042695:CDS
TGGTCATTTGGTAAAGGAGC+TGG 0.494479 5.2:+45305371 None:intergenic
AAGAACTGTCTGTTCAATAG+TGG 0.499927 5.2:+45305151 None:intergenic
TGTGTTGAAGCTTGGTGGCA+TGG 0.500253 5.2:+45307337 None:intergenic
TTGATGTTGAGTGGTGGTGA+TGG 0.503048 5.2:-45307008 MS.gene042695:CDS
CCAGATGAAGCTAGTTGAGA+TGG 0.511789 5.2:-45305351 MS.gene042695:CDS
GCCTGGTTCATACGTGCAAA+GGG 0.513019 5.2:-45306712 MS.gene042695:intron
AATGTCTAGAATCACAAAAG+AGG 0.515187 5.2:-45305475 MS.gene042695:CDS
TTCATCTGGTCATTTGGTAA+AGG 0.516461 5.2:+45305365 None:intergenic
GTGTTGAAGCTTGGTGGCAT+GGG 0.524729 5.2:+45307338 None:intergenic
GTATCGAGTTGGCGAAACAT+CGG 0.525109 5.2:-45307252 MS.gene042695:CDS
TGATGTTGAGTGGTGGTGAT+GGG 0.525956 5.2:-45307007 MS.gene042695:CDS
GAAACTTGAGAAAATAAATC+GGG 0.527811 5.2:+45307063 None:intergenic
TGCAAGAGAACAACAAGAAG+AGG 0.529798 5.2:-45306857 MS.gene042695:CDS
ATGGTCTTGATCAACTGTCC+AGG 0.530534 5.2:+45305221 None:intergenic
TGCCTGGTTCATACGTGCAA+AGG 0.533937 5.2:-45306713 MS.gene042695:CDS
AGCTAGTGATACAAGGTTCA+CGG 0.534009 5.2:-45304836 MS.gene042695:CDS
ACAAGATCACGAAGAAGCTC+GGG 0.541968 5.2:-45306925 MS.gene042695:CDS
CATATCTTCAAGAGCAGCAA+TGG 0.547350 5.2:+45305202 None:intergenic
TCTTTATTCATTCAATGTCA+AGG 0.550164 5.2:-45305132 MS.gene042695:intron
GTCCAGGCCTTCTCCTTGAG+AGG 0.550662 5.2:+45305237 None:intergenic
ACCCTTTGCACGTATGAACC+AGG 0.550812 5.2:+45306711 None:intergenic
CTTCGATACCTGATTCTTCG+CGG 0.569325 5.2:+45307087 None:intergenic
TTAAAATCCTCTCAAGGAGA+AGG 0.575154 5.2:-45305244 MS.gene042695:CDS
ATGCCTCAAACACAAACTTC+AGG 0.576898 5.2:-45307197 MS.gene042695:CDS
TTCAGGTAGCTAGTGATACA+AGG 0.585732 5.2:-45304843 MS.gene042695:intron
TCAAGTGTGTTGAAGCTTGG+TGG 0.589540 5.2:+45307332 None:intergenic
TGACTCACATAGCTGTTGAA+AGG 0.591781 5.2:-45306785 MS.gene042695:CDS
TGAAAACAACAACGGAATGG+TGG 0.599929 5.2:-45307228 MS.gene042695:CDS
GCACGTATGAACCAGGCATG+AGG 0.603673 5.2:+45306718 None:intergenic
CAATGATTAAAATCCTCTCA+AGG 0.606240 5.2:-45305250 MS.gene042695:CDS
ATCAAGCTTCTATAATTGGG+GGG 0.607172 5.2:-45305535 MS.gene042695:CDS
CACGTATGAACCAGGCATGA+GGG 0.608646 5.2:+45306719 None:intergenic
AGCACAATCAAAACAAGTTG+GGG 0.609367 5.2:-45305435 MS.gene042695:CDS
GACCAAAATTTGATGTTGAG+TGG 0.615025 5.2:-45307017 MS.gene042695:CDS
TGATCAAGCTTCTATAATTG+GGG 0.615729 5.2:-45305537 MS.gene042695:CDS
GAGGTTCAAATTGACAAGCG+TGG 0.615809 5.2:-45306967 MS.gene042695:CDS
TAATCAAGTGTGTTGAAGCT+TGG 0.616529 5.2:+45307329 None:intergenic
TAGCTGTTGAAAGGAATCGA+AGG 0.623409 5.2:-45306776 MS.gene042695:CDS
GGGTGAAAACAACAACGGAA+TGG 0.626152 5.2:-45307231 MS.gene042695:CDS
AAAACTTAGTATCTGCTGAA+CGG 0.628856 5.2:+45304795 None:intergenic
GATCAAGCTTCTATAATTGG+GGG 0.640085 5.2:-45305536 MS.gene042695:CDS
CCTCAAACACAAACTTCAGG+AGG 0.642336 5.2:-45307194 MS.gene042695:CDS
TCAAGCTTCTATAATTGGGG+GGG 0.643949 5.2:-45305534 MS.gene042695:CDS
TAGTGGTGATGTTTGTGTGA+AGG 0.650341 5.2:+45305168 None:intergenic
GGTTTCTGATGAGAACAACT+CGG 0.653773 5.2:-45306904 MS.gene042695:CDS
CAAAATTTGATGTTGAGTGG+TGG 0.660663 5.2:-45307014 MS.gene042695:CDS
GTTCAAATTGACAAGCGTGG+AGG 0.694433 5.2:-45306964 MS.gene042695:CDS
GGTTAGGAGAAAATGACGAG+AGG 0.716694 5.2:-45306986 MS.gene042695:CDS
ACATCGGGTGAAAACAACAA+CGG 0.729217 5.2:-45307236 MS.gene042695:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAACATAAATTAAAATC+TGG - chr5.2:45307191-45307210 MS.gene042695:CDS 15.0%
!! TCAAACATAAATTAAAATCT+GGG - chr5.2:45307192-45307211 MS.gene042695:CDS 15.0%
!!! AATTTTTAAAGATGGAAAAT+AGG + chr5.2:45306496-45306515 None:intergenic 15.0%
!!! ATCAAGAAAATTTTTAAAGA+TGG + chr5.2:45306504-45306523 None:intergenic 15.0%
!!! ATTTTTAAAGATGGAAAATA+GGG + chr5.2:45306495-45306514 None:intergenic 15.0%
!!! GTTTTTGATTTTACAATATA+GGG - chr5.2:45306546-45306565 MS.gene042695:intron 15.0%
!!! TAAATTTTAGAGAACAATTA+CGG + chr5.2:45306180-45306199 None:intergenic 15.0%
!!! TGTTTTTGATTTTACAATAT+AGG - chr5.2:45306545-45306564 MS.gene042695:intron 15.0%
!! AAACATAAATTAAAATCTGG+GGG - chr5.2:45307194-45307213 MS.gene042695:CDS 20.0%
!! AAGTTTCAAAAGTTTCAAAT+AGG - chr5.2:45305613-45305632 MS.gene042695:intron 20.0%
!! ACCAAAGTTAAATTATTATC+GGG - chr5.2:45305477-45305496 MS.gene042695:CDS 20.0%
!! CAAACATAAATTAAAATCTG+GGG - chr5.2:45307193-45307212 MS.gene042695:CDS 20.0%
!! CACCAAAGTTAAATTATTAT+CGG - chr5.2:45305476-45305495 MS.gene042695:CDS 20.0%
!! TTGAATCTTTCAAAACTTAT+AGG - chr5.2:45306094-45306113 MS.gene042695:intron 20.0%
!!! CTCTAAAATTTAACAATGTA+AGG - chr5.2:45306188-45306207 MS.gene042695:intron 20.0%
!!! GGTAAACTTATTTTTTTTTG+AGG + chr5.2:45306474-45306493 None:intergenic 20.0%
!!! TAATTTTTAACTGACAACAA+GGG - chr5.2:45305975-45305994 MS.gene042695:intron 20.0%
!!! TTAATTTTTAACTGACAACA+AGG - chr5.2:45305974-45305993 MS.gene042695:intron 20.0%
!!! TTGAAACTTTTGAAACTTAA+AGG + chr5.2:45305611-45305630 None:intergenic 20.0%
! AAAACTTATAGGACTAACTT+GGG - chr5.2:45306105-45306124 MS.gene042695:intron 25.0%
! AAATATATTAACACACCACA+AGG + chr5.2:45306440-45306459 None:intergenic 25.0%
! AAGTTACAAAAGTTTCACAT+AGG + chr5.2:45306032-45306051 None:intergenic 25.0%
! AATATATTAACACACCACAA+GGG + chr5.2:45306439-45306458 None:intergenic 25.0%
! ATTATCTCATAAGATGTGAA+TGG + chr5.2:45307068-45307087 None:intergenic 25.0%
! ATTGCACCAAAATTAAACAA+TGG - chr5.2:45306218-45306237 MS.gene042695:intron 25.0%
! GAAACTTAAAGGATTAACTT+GGG + chr5.2:45305540-45305559 None:intergenic 25.0%
! GAAACTTGAGAAAATAAATC+GGG + chr5.2:45305046-45305065 None:intergenic 25.0%
! GAGTCAACATAATATTTACA+AGG + chr5.2:45306366-45306385 None:intergenic 25.0%
! GGAAACTTGAGAAAATAAAT+CGG + chr5.2:45305047-45305066 None:intergenic 25.0%
! GTAACTTAAAAGACTAACTT+GGG - chr5.2:45306045-45306064 MS.gene042695:intron 25.0%
! TCTTTATTCATTCAATGTCA+AGG - chr5.2:45306974-45306993 MS.gene042695:CDS 25.0%
! TGTAACTTAAAAGACTAACT+TGG - chr5.2:45306044-45306063 MS.gene042695:intron 25.0%
!! ACCCGATAATAATTTAACTT+TGG + chr5.2:45305481-45305500 None:intergenic 25.0%
!! CCACTTAAGTCTAAAATTTA+AGG - chr5.2:45307166-45307185 MS.gene042695:CDS 25.0%
!! CCTTAAATTTTAGACTTAAG+TGG + chr5.2:45307169-45307188 None:intergenic 25.0%
!!! ATTTTGGTCTTCTATCTTAT+TGG + chr5.2:45305078-45305097 None:intergenic 25.0%
!!! CTCTAACCATTGTTTAATTT+TGG + chr5.2:45306227-45306246 None:intergenic 25.0%
!!! GTTTCTAGTTTTTTGTTCTT+TGG - chr5.2:45306326-45306345 MS.gene042695:intron 25.0%
AAAACTTAGTATCTGCTGAA+CGG + chr5.2:45307314-45307333 None:intergenic 30.0%
AAGCACAATCAAAACAAGTT+GGG - chr5.2:45306670-45306689 MS.gene042695:intron 30.0%
AAGTTTCGAAAGTTTCAGTT+AGG - chr5.2:45305553-45305572 MS.gene042695:intron 30.0%
AATGCCTAAAACAGAGAATA+GGG + chr5.2:45306290-45306309 None:intergenic 30.0%
CAAAACTTATAGGACTAACT+TGG - chr5.2:45306104-45306123 MS.gene042695:intron 30.0%
CAATGATTAAAATCCTCTCA+AGG - chr5.2:45306856-45306875 MS.gene042695:CDS 30.0%
CGAAACTTAAAGGATTAACT+TGG + chr5.2:45305541-45305560 None:intergenic 30.0%
CTGAAACTTTCGAAACTTAA+AGG + chr5.2:45305551-45305570 None:intergenic 30.0%
GAGAATTCTGTCAAACTAAA+AGG + chr5.2:45305580-45305599 None:intergenic 30.0%
GATCCAAGTCAACAATTTAA+CGG + chr5.2:45305709-45305728 None:intergenic 30.0%
GGGAATTATGTCAAACTAAA+AGG - chr5.2:45306065-45306084 MS.gene042695:intron 30.0%
GTGATCAAGCTTCTATAATT+GGG - chr5.2:45306568-45306587 MS.gene042695:intron 30.0%
TAAACTAAAATGACCAAACG+TGG - chr5.2:45306136-45306155 MS.gene042695:intron 30.0%
TATAGAATTTGTGAGGGAAT+TGG - chr5.2:45306596-45306615 MS.gene042695:intron 30.0%
TGATCAAGCTTCTATAATTG+GGG - chr5.2:45306569-45306588 MS.gene042695:intron 30.0%
TTTGTGATTCTAGACATTGA+AGG + chr5.2:45306629-45306648 None:intergenic 30.0%
! AATGTCTAGAATCACAAAAG+AGG - chr5.2:45306631-45306650 MS.gene042695:intron 30.0%
! GGGAATTTTGTCAAACTAAA+AGG + chr5.2:45305520-45305539 None:intergenic 30.0%
! TCTATCTTATTGGTTAAGAC+AGG + chr5.2:45305068-45305087 None:intergenic 30.0%
! TTTACCCTATTCTCTGTTTT+AGG - chr5.2:45306283-45306302 MS.gene042695:intron 30.0%
!!! GTATTTTTTGTGATGTGTTC+AGG - chr5.2:45307246-45307265 MS.gene042695:CDS 30.0%
!!! TCTAGTTTTTTGTTCTTTGG+TGG - chr5.2:45306329-45306348 MS.gene042695:intron 30.0%
!!! TTTTTTGTTCTTTGGTGGTT+AGG - chr5.2:45306334-45306353 MS.gene042695:intron 30.0%
AAGAACTGTCTGTTCAATAG+TGG + chr5.2:45306958-45306977 None:intergenic 35.0%
AATGACCAAACGTGGTATTT+AGG - chr5.2:45306144-45306163 MS.gene042695:intron 35.0%
AGCACAATCAAAACAAGTTG+GGG - chr5.2:45306671-45306690 MS.gene042695:intron 35.0%
ATAAGCCTAAATACCACGTT+TGG + chr5.2:45306152-45306171 None:intergenic 35.0%
ATCAAGCTTCTATAATTGGG+GGG - chr5.2:45306571-45306590 MS.gene042695:intron 35.0%
CAAAATTTGATGTTGAGTGG+TGG - chr5.2:45305092-45305111 MS.gene042695:intron 35.0%
CAATGCCTAAAACAGAGAAT+AGG + chr5.2:45306291-45306310 None:intergenic 35.0%
GAAGCACAATCAAAACAAGT+TGG - chr5.2:45306669-45306688 MS.gene042695:intron 35.0%
GACCAAAATTTGATGTTGAG+TGG - chr5.2:45305089-45305108 MS.gene042695:intron 35.0%
GATCAAGCTTCTATAATTGG+GGG - chr5.2:45306570-45306589 MS.gene042695:intron 35.0%
GATGTAGAAGTGAAACTTCT+AGG - chr5.2:45306825-45306844 MS.gene042695:CDS 35.0%
GGTGATCAAGCTTCTATAAT+TGG - chr5.2:45306567-45306586 MS.gene042695:intron 35.0%
GTCAGTTAATAGTGCTAGAA+AGG + chr5.2:45305836-45305855 None:intergenic 35.0%
GTTAGAGTTAGACACAAACT+AGG - chr5.2:45306240-45306259 MS.gene042695:intron 35.0%
TAATCAAGTGTGTTGAAGCT+TGG + chr5.2:45304780-45304799 None:intergenic 35.0%
TCACTTGTCTTAACAGTTCT+TGG + chr5.2:45305281-45305300 None:intergenic 35.0%
TGTCAAAACGCTACGTTTAA+TGG - chr5.2:45305757-45305776 MS.gene042695:intron 35.0%
TTAAAATCCTCTCAAGGAGA+AGG - chr5.2:45306862-45306881 MS.gene042695:CDS 35.0%
TTAAACGAAGACTGACAACA+GGG + chr5.2:45305671-45305690 None:intergenic 35.0%
TTAACTGACAACAAGGGTAA+CGG - chr5.2:45305981-45306000 MS.gene042695:intron 35.0%
TTCATCTGGTCATTTGGTAA+AGG + chr5.2:45306744-45306763 None:intergenic 35.0%
! CACCACTCAACATCAAATTT+TGG + chr5.2:45305094-45305113 None:intergenic 35.0%
! CGTATTGTTGTTGTTGTTGT+TGG + chr5.2:45304821-45304840 None:intergenic 35.0%
! TAGCCGTTAAATTGTTGACT+TGG - chr5.2:45305703-45305722 MS.gene042695:intron 35.0%
!! AACGTAACATTTTGACATCC+TGG - chr5.2:45305891-45305910 MS.gene042695:intron 35.0%
!! CTATTCTCTGTTTTAGGCAT+TGG - chr5.2:45306289-45306308 MS.gene042695:intron 35.0%
AAAGGAGCTGGAAAAAATGG+AGG + chr5.2:45306726-45306745 None:intergenic 40.0%
AACAAGATCACGAAGAAGCT+CGG - chr5.2:45305180-45305199 MS.gene042695:CDS 40.0%
AAGACTGACAACAGGGATAA+CGG + chr5.2:45305664-45305683 None:intergenic 40.0%
AAGCTAGTTGAGATGGAAAC+TGG - chr5.2:45306762-45306781 MS.gene042695:CDS 40.0%
ACATCGGGTGAAAACAACAA+CGG - chr5.2:45304870-45304889 MS.gene042695:intron 40.0%
AGCTAGTGATACAAGGTTCA+CGG - chr5.2:45307270-45307289 MS.gene042695:CDS 40.0%
ATGCCTCAAACACAAACTTC+AGG - chr5.2:45304909-45304928 MS.gene042695:intron 40.0%
CAAAAGAGGAGAAGACTACT+AGG - chr5.2:45306645-45306664 MS.gene042695:intron 40.0%
CATATCTTCAAGAGCAGCAA+TGG + chr5.2:45306907-45306926 None:intergenic 40.0%
GGTAAAGGAGCTGGAAAAAA+TGG + chr5.2:45306729-45306748 None:intergenic 40.0%
GGTTTCTGATGAGAACAACT+CGG - chr5.2:45305202-45305221 MS.gene042695:CDS 40.0%
GTTAAACGAAGACTGACAAC+AGG + chr5.2:45305672-45305691 None:intergenic 40.0%
TAGCTGTTGAAAGGAATCGA+AGG - chr5.2:45305330-45305349 MS.gene042695:CDS 40.0%
TATCGGGTCAAATACACGTT+TGG - chr5.2:45305493-45305512 MS.gene042695:CDS 40.0%
TCAAGCTTCTATAATTGGGG+GGG - chr5.2:45306572-45306591 MS.gene042695:intron 40.0%
TGAAAACAACAACGGAATGG+TGG - chr5.2:45304878-45304897 MS.gene042695:intron 40.0%
TGACTCACATAGCTGTTGAA+AGG - chr5.2:45305321-45305340 MS.gene042695:CDS 40.0%
TGCAAGAGAACAACAAGAAG+AGG - chr5.2:45305249-45305268 MS.gene042695:CDS 40.0%
TGCAGAGAGTAAGTCATGTT+TGG - chr5.2:45306800-45306819 MS.gene042695:CDS 40.0%
TGGGGGATATATATGCTTTG+TGG - chr5.2:45307211-45307230 MS.gene042695:CDS 40.0%
TTCAGGTAGCTAGTGATACA+AGG - chr5.2:45307263-45307282 MS.gene042695:CDS 40.0%
! ACTAGCTTCATCTGGTCATT+TGG + chr5.2:45306750-45306769 None:intergenic 40.0%
! CAAACTTCAGGAGGCTTTTA+TGG - chr5.2:45304921-45304940 MS.gene042695:intron 40.0%
! GTGATGCAGTTTGCAGATTT+TGG - chr5.2:45304978-45304997 MS.gene042695:intron 40.0%
! TAGTGGTGATGTTTGTGTGA+AGG + chr5.2:45306941-45306960 None:intergenic 40.0%
! TCGCGGTTTAAGGCTAATTT+AGG + chr5.2:45305005-45305024 None:intergenic 40.0%
!! TGTTGACTCTTGTTTGAGCT+CGG - chr5.2:45306377-45306396 MS.gene042695:intron 40.0%
!!! CAGCTTTTGAAGTATCGAGT+TGG - chr5.2:45304843-45304862 MS.gene042695:intron 40.0%
ACAAGATCACGAAGAAGCTC+GGG - chr5.2:45305181-45305200 MS.gene042695:CDS 45.0%
ACCTGATTCTTCGCGGTTTA+AGG + chr5.2:45305015-45305034 None:intergenic 45.0%
CCAGATGAAGCTAGTTGAGA+TGG - chr5.2:45306755-45306774 MS.gene042695:CDS 45.0%
CCTCAAACACAAACTTCAGG+AGG - chr5.2:45304912-45304931 MS.gene042695:intron 45.0%
CCTCCTGAAGTTTGTGTTTG+AGG + chr5.2:45304915-45304934 None:intergenic 45.0%
CTTCGATACCTGATTCTTCG+CGG + chr5.2:45305022-45305041 None:intergenic 45.0%
GAGGTTCAAATTGACAAGCG+TGG - chr5.2:45305139-45305158 MS.gene042695:CDS 45.0%
GGGGGCTATAGAATTTGTGA+GGG - chr5.2:45306590-45306609 MS.gene042695:intron 45.0%
GGGTGAAAACAACAACGGAA+TGG - chr5.2:45304875-45304894 MS.gene042695:intron 45.0%
GGTTAGGAGAAAATGACGAG+AGG - chr5.2:45305120-45305139 MS.gene042695:intron 45.0%
GTTCAAATTGACAAGCGTGG+AGG - chr5.2:45305142-45305161 MS.gene042695:CDS 45.0%
TCAAGTGTGTTGAAGCTTGG+TGG + chr5.2:45304777-45304796 None:intergenic 45.0%
TGGTCATTTGGTAAAGGAGC+TGG + chr5.2:45306738-45306757 None:intergenic 45.0%
! ATGGTCTTGATCAACTGTCC+AGG + chr5.2:45306888-45306907 None:intergenic 45.0%
! CCATCTCAACTAGCTTCATC+TGG + chr5.2:45306758-45306777 None:intergenic 45.0%
! GACACCCTCGAGCTTTTAAA+AGG + chr5.2:45305741-45305760 None:intergenic 45.0%
! GTTGACTCTTGTTTGAGCTC+GGG - chr5.2:45306378-45306397 MS.gene042695:intron 45.0%
! TGATGTTGAGTGGTGGTGAT+GGG - chr5.2:45305099-45305118 MS.gene042695:intron 45.0%
! TTGATGTTGAGTGGTGGTGA+TGG - chr5.2:45305098-45305117 MS.gene042695:intron 45.0%
!! CGCTGTCTTTTAAAAGCTCC+AGG + chr5.2:45305912-45305931 None:intergenic 45.0%
!! GCTGCCTTTTAAAAGCTCGA+GGG - chr5.2:45305734-45305753 MS.gene042695:intron 45.0%
!! GTATCGAGTTGGCGAAACAT+CGG - chr5.2:45304854-45304873 MS.gene042695:intron 45.0%
!! TATCGAGTTGGCGAAACATC+GGG - chr5.2:45304855-45304874 MS.gene042695:intron 45.0%
!! TGCTGCCTTTTAAAAGCTCG+AGG - chr5.2:45305733-45305752 MS.gene042695:intron 45.0%
AACCAGGCATGAGGGATCTA+AGG + chr5.2:45305382-45305401 None:intergenic 50.0%
ACAAGGGTCTTCCTAGCACA+AGG + chr5.2:45306423-45306442 None:intergenic 50.0%
ACCCTTTGCACGTATGAACC+AGG + chr5.2:45305398-45305417 None:intergenic 50.0%
CACGTATGAACCAGGCATGA+GGG + chr5.2:45305390-45305409 None:intergenic 50.0%
GCCTGGTTCATACGTGCAAA+GGG - chr5.2:45305394-45305413 MS.gene042695:CDS 50.0%
GCCTTAAACCGCGAAGAATC+AGG - chr5.2:45305011-45305030 MS.gene042695:intron 50.0%
GGGGGGCTATAGAATTTGTG+AGG - chr5.2:45306589-45306608 MS.gene042695:intron 50.0%
TGCCTGGTTCATACGTGCAA+AGG - chr5.2:45305393-45305412 MS.gene042695:CDS 50.0%
TTGTGCTAGGAAGACCCTTG+TGG - chr5.2:45306422-45306441 MS.gene042695:intron 50.0%
! CCTAGCACAAGGAGTGCAAA+AGG + chr5.2:45306412-45306431 None:intergenic 50.0%
! CCTTTTGCACTCCTTGTGCT+AGG - chr5.2:45306409-45306428 MS.gene042695:intron 50.0%
!! TTGAGTGGTGGTGATGGGTT+AGG - chr5.2:45305104-45305123 MS.gene042695:intron 50.0%
ATCCTCTCAAGGAGAAGGCC+TGG - chr5.2:45306867-45306886 MS.gene042695:CDS 55.0%
GCACGTATGAACCAGGCATG+AGG + chr5.2:45305391-45305410 None:intergenic 55.0%
GTCCTTAGATCCCTCATGCC+TGG - chr5.2:45305377-45305396 MS.gene042695:CDS 55.0%
GTCCAGGCCTTCTCCTTGAG+AGG + chr5.2:45306872-45306891 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 45304771 45307357 45304771 ID=MS.gene042695
chr5.2 mRNA 45304771 45307357 45304771 ID=MS.gene042695.t1;Parent=MS.gene042695
chr5.2 exon 45306713 45307357 45306713 ID=MS.gene042695.t1.exon1;Parent=MS.gene042695.t1
chr5.2 CDS 45306713 45307357 45306713 ID=cds.MS.gene042695.t1;Parent=MS.gene042695.t1
chr5.2 exon 45305133 45305561 45305133 ID=MS.gene042695.t1.exon2;Parent=MS.gene042695.t1
chr5.2 CDS 45305133 45305561 45305133 ID=cds.MS.gene042695.t1;Parent=MS.gene042695.t1
chr5.2 exon 45304771 45304860 45304771 ID=MS.gene042695.t1.exon3;Parent=MS.gene042695.t1
chr5.2 CDS 45304771 45304860 45304771 ID=cds.MS.gene042695.t1;Parent=MS.gene042695.t1
Gene Sequence

>MS.gene042695

ATGCCACCAAGCTTCAACACACTTGATTACTCTCTTGATCATCATCACCAACAACAACAACAACAATACGAACAGCTTTTGAAGTATCGAGTTGGCGAAACATCGGGTGAAAACAACAACGGAATGGTGGATAATTACATGCCTCAAACACAAACTTCAGGAGGCTTTTATGGTGCAAACTCTTTTGATAAAATGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCTAAATTAGCCTTAAACCGCGAAGAATCAGGTATCGAAGACCCGATTTATTTTCTCAAGTTTCCTGTCTTAACCAATAAGATAGAAGACCAAAATTTGATGTTGAGTGGTGGTGATGGGTTAGGAGAAAATGACGAGAGGTTCAAATTGACAAGCGTGGAGGATAAATCAAGAGATCAACAAGATCACGAAGAAGCTCGGGTTTCTGATGAGAACAACTCGGTGCAAGAGAAGAATTGTGCAGTAGTGCAAGAGAACAACAAGAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGTCAACGTATGACTCACATAGCTGTTGAAAGGAATCGAAGGAAACAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTGCAAAGGGTATTTTTATTTATTTATTTTCTTGAAGAAAAATGTATGTCATAGCTCACTATAATATTGCACCAAAGTTAAATTATTATCGGGTCAAATACACGTTTGGTCCTTTTAGTTTGACAAAATTCCCAAGTTAATCCTTTAAGTTTCGAAAGTTTCAGTTAGGTCCTTTTAGTTTGACAGAATTCTCAAGTTAGTCCTTTAAGTTTCAAAAGTTTCAAATAGGTCATTTTAGTTGATAAACTATTTCACCGTTATCCCTGTTGTCAGTCTTCGTTTAACTGATGCTGATGTAGCCGTTAAATTGTTGACTTGGATCAAAATGCTGCCTTTTAAAAGCTCGAGGGTGTCAAAACGCTACGTTTAATGGTAACAAATGATAACTTATAGTGCTAGAAAGACAACTAGTTACAACAACAAATGCCTTTCTAGCACTATTAACTGACATTTATAGTGCTAGAATGATCATTTGTAACGATTAAACGTAACATTTTGACATCCTGGAGCTTTTAAAAGACAGCGTTTTGATCAAAGTCAACAACTTAACGACTACATCAGCATAAGTTAATTTTTAACTGACAACAAGGGTAACGGTGAAATAGTTTATCAACTAAAATGACCTATGTGAAACTTTTGTAACTTAAAAGACTAACTTGGGAATTATGTCAAACTAAAAGGACTTAATTGAATCTTTCAAAACTTATAGGACTAACTTGGGAATTCTGTTAAACTAAAATGACCAAACGTGGTATTTAGGCTTATTATCACCGTAATTGTTCTCTAAAATTTAACAATGTAAGGTCTATAAATTGCACCAAAATTAAACAATGGTTAGAGTTAGACACAAACTAGGAAAGAAGTTGTAATAATAAGTTTACCCTATTCTCTGTTTTAGGCATTGGTTAACTGTTTCTTTGTTTCTAGTTTTTTGTTCTTTGGTGGTTAGGCGTTAGCCTTGTAAATATTATGTTGACTCTTGTTTGAGCTCGGGTGTTTCATCCTTTTGCACTCCTTGTGCTAGGAAGACCCTTGTGGTGTGTTAATATATTTCATTTTAGTCTCCTCAAAAAAAAATAAGTTTACCCTATTTTCCATCTTTAAAAATTTTCTTGATTATATTGATTTATTATAATTTTGTTTTTGATTTTACAATATAGGGTGATCAAGCTTCTATAATTGGGGGGGCTATAGAATTTGTGAGGGAATTGGAACAACTCCTTCAATGTCTAGAATCACAAAAGAGGAGAAGACTACTAGGAGAAGCACAATCAAAACAAGTTGGGGACTCATCTCTTGCATCAACACAACAACAGCCTCCATTTTTTCCAGCTCCTTTACCAAATGACCAGATGAAGCTAGTTGAGATGGAAACTGGACTTCAAGAAGAAACTGCAGAGAGTAAGTCATGTTTGGCTGATGTAGAAGTGAAACTTCTAGGATTTGATGCAATGATTAAAATCCTCTCAAGGAGAAGGCCTGGACAGTTGATCAAGACCATTGCTGCTCTTGAAGATATGCAGCTCATTATCCTTCACACAAACATCACCACTATTGAACAGACAGTTCTTTATTCATTCAATGTCAAGGTATATAATTCATTATGTGATTGCTTAATTGTTATGTGTTCATATAATATCACTTTTTTATACATGCATCCATTCACATCTTATGAGATAATAAACTAGCATCACAATGTGATATACTTGTGATTTTGTAATTAGATGCATGTTTAAAAACATAAATTAAATTACTTCAGCCACTTAAGTCTAAAATTTAAGGAAATCAAACATAAATTAAAATCTGGGGGATATATATGCTTTGTGGTATTGTAATATTGTATTTTTTGTGATGTGTTCAGGTAGCTAGTGATACAAGGTTCACGGCTGAAGATATAGCAAGCTCCGTTCAGCAGATACTAAGTTTTATTCATGCAAACACTAGCATGTGA
Protein sequence

>MS.gene042695.t1

MPPSFNTLDYSLDHHHQQQQQQYEQLLKYRVGETSGENNNGMVDNYMPQTQTSGGFYGANSFDKMSFADVMQFADFGPKLALNREESGIEDPIYFLKFPVLTNKIEDQNLMLSGGDGLGENDERFKLTSVEDKSRDQQDHEEARVSDENNSVQEKNCAVVQENNKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSKQVGDSSLASTQQQPPFFPAPLPNDQMKLVEMETGLQEETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIASSVQQILSFIHANTSM