Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042882.t1 | KEH28285.1 | 76.4 | 351 | 31 | 2 | 395 | 693 | 239 | 589 | 2.30E-141 | 513.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042882.t1 | Q8RWH3 | 40.3 | 221 | 108 | 7 | 491 | 693 | 92 | 306 | 1.4e-33 | 146.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042882.t1 | A0A072UR00 | 76.4 | 351 | 31 | 2 | 395 | 693 | 239 | 589 | 1.6e-141 | 513.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042882.t1 | MTR_5g082700 | 76.136 | 352 | 32 | 2 | 394 | 693 | 238 | 589 | 2.90e-169 | 501 |
| MS.gene042882.t1 | MTR_5g082700 | 76.136 | 352 | 32 | 2 | 394 | 693 | 238 | 589 | 4.43e-168 | 500 |
| MS.gene042882.t1 | MTR_5g082700 | 76.136 | 352 | 32 | 2 | 394 | 693 | 238 | 589 | 7.91e-168 | 501 |
| MS.gene042882.t1 | MTR_6g074905 | 57.080 | 226 | 53 | 2 | 476 | 693 | 859 | 1048 | 2.58e-73 | 259 |
| MS.gene042882.t1 | MTR_6g074870 | 49.609 | 256 | 74 | 4 | 446 | 693 | 71 | 279 | 2.17e-65 | 221 |
| MS.gene042882.t1 | MTR_0349s0030 | 73.913 | 115 | 30 | 0 | 579 | 693 | 54 | 168 | 3.35e-52 | 184 |
| MS.gene042882.t1 | MTR_8g069620 | 58.228 | 158 | 58 | 1 | 485 | 634 | 14 | 171 | 8.89e-51 | 176 |
| MS.gene042882.t1 | MTR_6g074640 | 50.877 | 171 | 46 | 2 | 495 | 665 | 11 | 143 | 2.88e-45 | 162 |
| MS.gene042882.t1 | MTR_2g066850 | 72.321 | 112 | 28 | 1 | 2 | 110 | 90 | 201 | 8.29e-40 | 159 |
| MS.gene042882.t1 | MTR_8g070930 | 39.583 | 240 | 120 | 7 | 473 | 693 | 91 | 324 | 2.61e-39 | 157 |
| MS.gene042882.t1 | MTR_6g074750 | 75.000 | 80 | 20 | 0 | 614 | 693 | 18 | 97 | 2.86e-35 | 130 |
| MS.gene042882.t1 | MTR_2g020520 | 65.254 | 118 | 38 | 2 | 97 | 211 | 15 | 132 | 3.72e-34 | 136 |
| MS.gene042882.t1 | MTR_2g020520 | 64.463 | 121 | 38 | 3 | 100 | 215 | 19 | 139 | 4.27e-34 | 136 |
| MS.gene042882.t1 | MTR_1g111180 | 33.838 | 198 | 112 | 6 | 510 | 693 | 671 | 863 | 5.69e-22 | 102 |
| MS.gene042882.t1 | MTR_1g111180 | 33.838 | 198 | 112 | 6 | 510 | 693 | 670 | 862 | 5.83e-22 | 102 |
| MS.gene042882.t1 | MTR_8g446460 | 78.571 | 56 | 11 | 1 | 2 | 56 | 124 | 179 | 2.45e-20 | 93.2 |
| MS.gene042882.t1 | MTR_6g034670 | 71.014 | 69 | 15 | 2 | 36 | 103 | 1 | 65 | 8.79e-20 | 86.3 |
| MS.gene042882.t1 | MTR_8g063010 | 42.446 | 139 | 59 | 5 | 2 | 122 | 65 | 200 | 1.76e-19 | 87.8 |
| MS.gene042882.t1 | MTR_3g013490 | 72.857 | 70 | 19 | 0 | 168 | 237 | 195 | 264 | 1.99e-18 | 90.9 |
| MS.gene042882.t1 | MTR_2g075630 | 40.000 | 145 | 44 | 6 | 2 | 103 | 91 | 235 | 8.86e-18 | 84.3 |
| MS.gene042882.t1 | MTR_1g036590 | 50.485 | 103 | 46 | 2 | 27 | 124 | 25 | 127 | 1.05e-17 | 86.7 |
| MS.gene042882.t1 | MTR_3g076540 | 28.311 | 219 | 119 | 6 | 507 | 693 | 86 | 298 | 3.05e-17 | 85.5 |
| MS.gene042882.t1 | MTR_3g076540 | 28.372 | 215 | 116 | 6 | 511 | 693 | 8 | 216 | 4.91e-17 | 84.0 |
| MS.gene042882.t1 | MTR_4g104620 | 27.442 | 215 | 118 | 5 | 511 | 693 | 94 | 302 | 6.52e-17 | 84.3 |
| MS.gene042882.t1 | MTR_6g086260 | 80.000 | 45 | 9 | 0 | 690 | 734 | 462 | 506 | 1.65e-16 | 84.7 |
| MS.gene042882.t1 | MTR_3g076540 | 29.121 | 182 | 101 | 4 | 535 | 693 | 23 | 199 | 5.43e-16 | 80.5 |
| MS.gene042882.t1 | MTR_4g104620 | 28.415 | 183 | 103 | 3 | 534 | 693 | 22 | 199 | 1.00e-15 | 79.7 |
| MS.gene042882.t1 | MTR_4g104620 | 28.415 | 183 | 103 | 3 | 534 | 693 | 31 | 208 | 1.09e-15 | 79.7 |
| MS.gene042882.t1 | MTR_3g076540 | 28.095 | 210 | 113 | 6 | 507 | 684 | 86 | 289 | 1.71e-15 | 80.1 |
| MS.gene042882.t1 | MTR_3g086530 | 23.810 | 231 | 134 | 6 | 498 | 693 | 76 | 299 | 3.52e-15 | 77.8 |
| MS.gene042882.t1 | MTR_3g086530 | 23.810 | 231 | 134 | 6 | 498 | 693 | 76 | 299 | 5.44e-15 | 78.2 |
| MS.gene042882.t1 | MTR_3g109390 | 27.064 | 218 | 122 | 5 | 507 | 693 | 66 | 277 | 9.19e-15 | 77.4 |
| MS.gene042882.t1 | MTR_3g086530 | 23.810 | 231 | 134 | 6 | 498 | 693 | 76 | 299 | 9.27e-15 | 77.8 |
| MS.gene042882.t1 | MTR_3g109390 | 27.064 | 218 | 122 | 5 | 507 | 693 | 66 | 277 | 1.00e-14 | 77.4 |
| MS.gene042882.t1 | MTR_3g109390 | 27.064 | 218 | 122 | 5 | 507 | 693 | 66 | 277 | 1.06e-14 | 76.6 |
| MS.gene042882.t1 | MTR_3g109390 | 27.064 | 218 | 122 | 5 | 507 | 693 | 44 | 255 | 1.14e-14 | 77.0 |
| MS.gene042882.t1 | MTR_2g097010 | 65.079 | 63 | 18 | 3 | 2 | 60 | 26 | 88 | 2.72e-14 | 77.0 |
| MS.gene042882.t1 | MTR_4g046643 | 67.797 | 59 | 15 | 3 | 2 | 56 | 26 | 84 | 7.83e-14 | 75.9 |
| MS.gene042882.t1 | MTR_3g086530 | 25.946 | 185 | 107 | 4 | 534 | 693 | 3 | 182 | 1.56e-13 | 72.8 |
| MS.gene042882.t1 | MTR_2g097020 | 66.102 | 59 | 16 | 3 | 2 | 56 | 26 | 84 | 4.55e-13 | 73.2 |
| MS.gene042882.t1 | MTR_3g109390 | 27.624 | 181 | 104 | 3 | 535 | 693 | 89 | 264 | 6.36e-13 | 71.6 |
| MS.gene042882.t1 | MTR_3g109390 | 27.624 | 181 | 104 | 3 | 535 | 693 | 111 | 286 | 6.48e-13 | 72.0 |
| MS.gene042882.t1 | MTR_5g044360 | 71.739 | 46 | 12 | 1 | 2 | 46 | 78 | 123 | 2.63e-12 | 66.6 |
| MS.gene042882.t1 | MTR_4g056390 | 34.932 | 146 | 78 | 5 | 515 | 647 | 39 | 180 | 7.63e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042882.t1 | AT2G40120 | 75.566 | 221 | 46 | 1 | 481 | 693 | 227 | 447 | 2.02e-110 | 348 |
| MS.gene042882.t1 | AT1G73450 | 67.699 | 226 | 65 | 1 | 476 | 693 | 802 | 1027 | 1.03e-97 | 328 |
| MS.gene042882.t1 | AT1G73460 | 67.699 | 226 | 65 | 1 | 476 | 693 | 819 | 1044 | 1.13e-97 | 328 |
| MS.gene042882.t1 | AT1G73460 | 67.699 | 226 | 65 | 1 | 476 | 693 | 819 | 1044 | 1.13e-97 | 328 |
| MS.gene042882.t1 | AT3G17750 | 67.257 | 226 | 66 | 1 | 476 | 693 | 788 | 1013 | 8.46e-96 | 323 |
| MS.gene042882.t1 | AT5G35980 | 40.271 | 221 | 108 | 7 | 491 | 693 | 92 | 306 | 4.91e-37 | 149 |
| MS.gene042882.t1 | AT5G35980 | 40.271 | 221 | 108 | 7 | 491 | 693 | 92 | 306 | 4.99e-37 | 150 |
| MS.gene042882.t1 | AT5G35980 | 40.271 | 221 | 108 | 7 | 491 | 693 | 57 | 271 | 5.41e-37 | 149 |
| MS.gene042882.t1 | AT3G53640 | 30.500 | 200 | 122 | 4 | 507 | 693 | 315 | 510 | 1.62e-18 | 90.5 |
| MS.gene042882.t1 | AT1G13350 | 29.851 | 201 | 122 | 5 | 507 | 693 | 434 | 629 | 3.37e-18 | 90.1 |
| MS.gene042882.t1 | AT1G13350 | 29.851 | 201 | 122 | 5 | 507 | 693 | 507 | 702 | 3.75e-18 | 89.7 |
| MS.gene042882.t1 | AT1G13350 | 29.851 | 201 | 122 | 5 | 507 | 693 | 461 | 656 | 3.89e-18 | 89.7 |
| MS.gene042882.t1 | AT3G25840 | 30.928 | 194 | 115 | 6 | 514 | 693 | 354 | 542 | 5.46e-18 | 89.0 |
| MS.gene042882.t1 | AT3G25840 | 30.928 | 194 | 115 | 6 | 514 | 693 | 616 | 804 | 9.05e-18 | 89.0 |
| MS.gene042882.t1 | AT4G24740 | 27.442 | 215 | 118 | 6 | 511 | 693 | 94 | 302 | 1.55e-16 | 82.0 |
| MS.gene042882.t1 | AT4G24740 | 27.442 | 215 | 118 | 6 | 511 | 693 | 94 | 302 | 2.02e-16 | 82.0 |
| MS.gene042882.t1 | AT4G24740 | 27.442 | 215 | 118 | 6 | 511 | 693 | 56 | 264 | 4.10e-16 | 81.6 |
| MS.gene042882.t1 | AT3G53570 | 24.891 | 229 | 134 | 5 | 498 | 693 | 84 | 307 | 5.28e-16 | 82.0 |
| MS.gene042882.t1 | AT3G53570 | 24.891 | 229 | 134 | 5 | 498 | 693 | 84 | 307 | 5.28e-16 | 82.0 |
| MS.gene042882.t1 | AT3G53570 | 24.891 | 229 | 134 | 5 | 498 | 693 | 98 | 321 | 5.57e-16 | 82.0 |
| MS.gene042882.t1 | AT3G53570 | 24.891 | 229 | 134 | 5 | 498 | 693 | 98 | 321 | 5.57e-16 | 82.0 |
| MS.gene042882.t1 | AT3G53570 | 24.891 | 229 | 134 | 5 | 498 | 693 | 98 | 321 | 5.57e-16 | 82.0 |
| MS.gene042882.t1 | AT4G24740 | 27.442 | 215 | 118 | 6 | 511 | 693 | 94 | 302 | 5.76e-16 | 81.6 |
| MS.gene042882.t1 | AT4G24740 | 28.571 | 182 | 102 | 4 | 535 | 693 | 23 | 199 | 1.08e-15 | 77.8 |
| MS.gene042882.t1 | AT4G24740 | 28.571 | 182 | 102 | 4 | 535 | 693 | 23 | 199 | 3.55e-15 | 77.8 |
| MS.gene042882.t1 | AT4G24740 | 28.571 | 182 | 102 | 4 | 535 | 693 | 23 | 199 | 3.55e-15 | 77.8 |
| MS.gene042882.t1 | AT4G24740 | 28.571 | 182 | 102 | 4 | 535 | 693 | 23 | 199 | 3.55e-15 | 77.8 |
| MS.gene042882.t1 | AT4G32660 | 28.972 | 214 | 115 | 5 | 511 | 693 | 67 | 274 | 1.36e-14 | 76.6 |
| MS.gene042882.t1 | AT4G32660 | 28.899 | 218 | 118 | 5 | 507 | 693 | 63 | 274 | 1.96e-14 | 76.6 |
| MS.gene042882.t1 | AT4G32660 | 28.899 | 218 | 118 | 5 | 507 | 693 | 55 | 266 | 2.13e-14 | 76.3 |
| MS.gene042882.t1 | AT2G17530 | 37.288 | 118 | 65 | 3 | 535 | 647 | 66 | 179 | 1.72e-11 | 67.0 |
| MS.gene042882.t1 | AT2G17530 | 34.694 | 147 | 79 | 4 | 514 | 647 | 37 | 179 | 4.77e-11 | 66.2 |
| MS.gene042882.t1 | AT2G17530 | 34.694 | 147 | 79 | 4 | 514 | 647 | 37 | 179 | 4.77e-11 | 66.2 |
| MS.gene042882.t1 | AT4G35500 | 34.014 | 147 | 80 | 5 | 514 | 647 | 37 | 179 | 6.49e-11 | 65.9 |
| MS.gene042882.t1 | AT4G32660 | 30.303 | 165 | 88 | 3 | 551 | 693 | 3 | 162 | 6.78e-11 | 64.3 |
Find 0 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAAAGTTACAAAAAAT+GGG | + | 42453:4670-4689 | MS.gene042882:CDS | 15.0% |
| !! | TAATCAAAAGTTACAAAAAA+TGG | + | 42453:4669-4688 | MS.gene042882:CDS | 15.0% |
| !!! | TAATTTTTGTTGTAACAAAA+CGG | - | 42453:2658-2677 | MS.gene042882:intergenic | 15.0% |
| !! | AACAAAGAAATATTAGATAG+TGG | + | 42453:2919-2938 | MS.gene042882:CDS | 20.0% |
| !! | ATTGCAATATTTACATAACT+TGG | + | 42453:4610-4629 | MS.gene042882:CDS | 20.0% |
| !! | GAAGATTATTAAAAATGACA+AGG | + | 42453:4343-4362 | MS.gene042882:CDS | 20.0% |
| !! | TAACATAATCAATTGTCTTA+GGG | - | 42453:3149-3168 | MS.gene042882:intergenic | 20.0% |
| !! | TATTTCAACAAACATGTAAT+GGG | - | 42453:3760-3779 | MS.gene042882:intergenic | 20.0% |
| !! | TTAACATAATCAATTGTCTT+AGG | - | 42453:3150-3169 | MS.gene042882:intergenic | 20.0% |
| !! | TTGCAATATTTACATAACTT+GGG | + | 42453:4611-4630 | MS.gene042882:CDS | 20.0% |
| !!! | CAATTTTTTCATCATATTGA+AGG | - | 42453:4796-4815 | MS.gene042882:intergenic | 20.0% |
| !!! | TATATTTTCTATTGTGTTAG+AGG | + | 42453:4994-5013 | MS.gene042882:CDS | 20.0% |
| ! | ACAACAGAAAGAAAAATCAA+AGG | + | 42453:3170-3189 | MS.gene042882:CDS | 25.0% |
| ! | ACTATGAAATTAAACTACGA+TGG | + | 42453:5017-5036 | MS.gene042882:CDS | 25.0% |
| ! | ATCACTGATATCATTACTTT+CGG | - | 42453:3205-3224 | MS.gene042882:intergenic | 25.0% |
| ! | CAATCAAAGATGAAAATACA+TGG | + | 42453:4926-4945 | MS.gene042882:CDS | 25.0% |
| ! | GCTTAATTTCCTTCAAATTA+AGG | - | 42453:3893-3912 | MS.gene042882:intergenic | 25.0% |
| ! | GTATTTCAACAAACATGTAA+TGG | - | 42453:3761-3780 | MS.gene042882:intergenic | 25.0% |
| ! | TTAAGGTAGCTAATGTTTAT+AGG | - | 42453:3876-3895 | MS.gene042882:intergenic | 25.0% |
| !! | CTGAATGATTTTCATATGAA+GGG | + | 42453:3918-3937 | MS.gene042882:CDS | 25.0% |
| !! | GATTGAGTATAAACCTTTTT+GGG | + | 42453:4853-4872 | MS.gene042882:CDS | 25.0% |
| !! | TCTGAATGATTTTCATATGA+AGG | + | 42453:3917-3936 | MS.gene042882:CDS | 25.0% |
| !! | TGATTGAGTATAAACCTTTT+TGG | + | 42453:4852-4871 | MS.gene042882:CDS | 25.0% |
| AACTTCGATGGTAAAATCAT+AGG | - | 42453:4009-4028 | MS.gene042882:intergenic | 30.0% | |
| AATTCTTACGCAATTGAAAG+AGG | + | 42453:2780-2799 | MS.gene042882:CDS | 30.0% | |
| ACTCTCAAAGTTTCTCTAAA+GGG | + | 42453:3031-3050 | MS.gene042882:CDS | 30.0% | |
| ACTTCGATGGTAAAATCATA+GGG | - | 42453:4008-4027 | MS.gene042882:intergenic | 30.0% | |
| ATAAAAGTGAATGTAGCAGA+TGG | + | 42453:3096-3115 | MS.gene042882:CDS | 30.0% | |
| ATTAAAGTGTACTCAAGTGA+AGG | + | 42453:3360-3379 | MS.gene042882:CDS | 30.0% | |
| CAATGAATAAATGTTCCTGA+TGG | - | 42453:4472-4491 | MS.gene042882:intergenic | 30.0% | |
| CATACATGAGTTAGTAAAGA+TGG | + | 42453:3263-3282 | MS.gene042882:CDS | 30.0% | |
| CTCAATAATAACAACAGGTT+CGG | - | 42453:2875-2894 | MS.gene042882:intergenic | 30.0% | |
| GAAATTCATCACAACAACAT+CGG | + | 42453:3725-3744 | MS.gene042882:CDS | 30.0% | |
| GAATTTCACCAATCTATTTC+TGG | - | 42453:3712-3731 | MS.gene042882:intergenic | 30.0% | |
| GCATAGTTCAAATTGCTATA+AGG | + | 42453:3980-3999 | MS.gene042882:intron | 30.0% | |
| TAAGAAGCTTGATTTCATCT+AGG | - | 42453:4385-4404 | MS.gene042882:intergenic | 30.0% | |
| TACTATGTGACAGATTATCT+CGG | + | 42453:4281-4300 | MS.gene042882:CDS | 30.0% | |
| TTAAAGTGTACTCAAGTGAA+GGG | + | 42453:3361-3380 | MS.gene042882:CDS | 30.0% | |
| ! | CATTAGCTACCTTAATTTGA+AGG | + | 42453:3881-3900 | MS.gene042882:CDS | 30.0% |
| ! | TCAATCAATTGAGTTGTGTA+AGG | - | 42453:4839-4858 | MS.gene042882:intergenic | 30.0% |
| ! | TTTTCTTTTTCCTCCCAAAA+AGG | - | 42453:4869-4888 | MS.gene042882:intergenic | 30.0% |
| !! | CTTTTGATTAGAACGTTTTC+AGG | - | 42453:4659-4678 | MS.gene042882:intergenic | 30.0% |
| !! | TTATGACTATTTCTACCATC+AGG | + | 42453:4454-4473 | MS.gene042882:CDS | 30.0% |
| !!! | CCATTGTTTTAAATCCCATT+CGG | - | 42453:4047-4066 | MS.gene042882:intergenic | 30.0% |
| AAATTCAACCAAGAATCTGG+TGG | + | 42453:4530-4549 | MS.gene042882:CDS | 35.0% | |
| AACTTCACAATTATGCGCAA+TGG | - | 42453:3805-3824 | MS.gene042882:intergenic | 35.0% | |
| AAGATGATGACTTAGAAGCT+TGG | + | 42453:4888-4907 | MS.gene042882:CDS | 35.0% | |
| AATAGCAGATAACTCACGTA+AGG | + | 42453:2711-2730 | MS.gene042882:CDS | 35.0% | |
| AGATGATGACTTAGAAGCTT+GGG | + | 42453:4889-4908 | MS.gene042882:CDS | 35.0% | |
| ATCTGTTTCAACAACTTCGA+TGG | - | 42453:4021-4040 | MS.gene042882:intergenic | 35.0% | |
| ATCTTCTTATAGCTTCGGTA+CGG | - | 42453:3624-3643 | MS.gene042882:intergenic | 35.0% | |
| ATTATTATCCTCTCCATCTG+TGG | - | 42453:4120-4139 | MS.gene042882:intergenic | 35.0% | |
| CACTCTCAAAGTTTCTCTAA+AGG | + | 42453:3030-3049 | MS.gene042882:CDS | 35.0% | |
| CAGAAATTCAACCAAGAATC+TGG | + | 42453:4527-4546 | MS.gene042882:CDS | 35.0% | |
| CATACCACAAAGATGAATCA+AGG | - | 42453:3508-3527 | MS.gene042882:intergenic | 35.0% | |
| CATCTTGACTGTATTTCAAG+AGG | - | 42453:4154-4173 | MS.gene042882:intergenic | 35.0% | |
| CATGGCTATCAAGTATTCAA+TGG | + | 42453:4944-4963 | MS.gene042882:CDS | 35.0% | |
| GACTGGATTTGAAGAAAACA+AGG | + | 42453:4220-4239 | MS.gene042882:CDS | 35.0% | |
| GAGCTTGAAGTGAAATATCT+AGG | - | 42453:2960-2979 | MS.gene042882:intergenic | 35.0% | |
| GCAATTTGAACTATGCTTCA+TGG | - | 42453:3976-3995 | MS.gene042882:intergenic | 35.0% | |
| GGAGTTCTTCACTCAAATAT+CGG | - | 42453:4082-4101 | MS.gene042882:intergenic | 35.0% | |
| GTCTCCTCAATAATAACAAC+AGG | - | 42453:2880-2899 | MS.gene042882:intergenic | 35.0% | |
| TAAAGTGTACTCAAGTGAAG+GGG | + | 42453:3362-3381 | MS.gene042882:CDS | 35.0% | |
| TCTTAGGGTCTGATTTAAGA+AGG | - | 42453:3134-3153 | MS.gene042882:intergenic | 35.0% | |
| TGAACTTTCTATTGCAGCAT+CGG | + | 42453:3230-3249 | MS.gene042882:CDS | 35.0% | |
| TGTGTCTATATGTACAATCC+CGG | + | 42453:4741-4760 | MS.gene042882:CDS | 35.0% | |
| TTGAAACAGATCTACCGAAT+GGG | + | 42453:4030-4049 | MS.gene042882:intron | 35.0% | |
| TTTGAGCTAAGAATTGTGCA+TGG | + | 42453:4188-4207 | MS.gene042882:CDS | 35.0% | |
| ! | ATTGATGACAGAACACCTTT+AGG | + | 42453:4812-4831 | MS.gene042882:CDS | 35.0% |
| ! | CCGAATGGGATTTAAAACAA+TGG | + | 42453:4044-4063 | MS.gene042882:intron | 35.0% |
| ! | CGAACCTGTTGTTATTATTG+AGG | + | 42453:2873-2892 | MS.gene042882:CDS | 35.0% |
| ! | CTCTCAAAGTTTCTCTAAAG+GGG | + | 42453:3032-3051 | MS.gene042882:CDS | 35.0% |
| ! | CTTTAGAGAAACTTTGAGAG+TGG | - | 42453:3032-3051 | MS.gene042882:intergenic | 35.0% |
| ! | GGGATTTAAAACAATGGAGT+AGG | + | 42453:4050-4069 | MS.gene042882:intron | 35.0% |
| ! | GTTTTCGAAGTATGTGAAAC+AGG | + | 42453:2831-2850 | MS.gene042882:CDS | 35.0% |
| ! | TCTCAAAGTTTCTCTAAAGG+GGG | + | 42453:3033-3052 | MS.gene042882:CDS | 35.0% |
| !! | TGAGTATAAACCTTTTTGGG+AGG | + | 42453:4856-4875 | MS.gene042882:CDS | 35.0% |
| !! | TTAGAACGTTTTCAGGCTTT+AGG | - | 42453:4652-4671 | MS.gene042882:intergenic | 35.0% |
| AAGCTATAAGAAGATTCGCG+TGG | + | 42453:3629-3648 | MS.gene042882:CDS | 40.0% | |
| ACCAGACACCAGAAATAGAT+TGG | + | 42453:3701-3720 | MS.gene042882:CDS | 40.0% | |
| ACGTGAGTTATCTGCTATTC+CGG | - | 42453:2710-2729 | MS.gene042882:intergenic | 40.0% | |
| AGAGCTTCTGATGTGATGTT+AGG | + | 42453:4770-4789 | MS.gene042882:CDS | 40.0% | |
| AGTATGTGGTGTTTATCTCC+CGG | - | 42453:4428-4447 | MS.gene042882:intergenic | 40.0% | |
| AGTCATAAAGACGCAGTATG+TGG | - | 42453:4442-4461 | MS.gene042882:intergenic | 40.0% | |
| ATCAGAAGCTCTATAAGACC+GGG | - | 42453:4762-4781 | MS.gene042882:intergenic | 40.0% | |
| CACATACTTCGAAAACGCTT+TGG | - | 42453:2827-2846 | MS.gene042882:intergenic | 40.0% | |
| CATCAGAAGCTCTATAAGAC+CGG | - | 42453:4763-4782 | MS.gene042882:intergenic | 40.0% | |
| CGCGAATCTTCTTATAGCTT+CGG | - | 42453:3629-3648 | MS.gene042882:intergenic | 40.0% | |
| CGGACAACGATATATCGAAT+CGG | - | 42453:2638-2657 | MS.gene042882:intergenic | 40.0% | |
| GAATTGTGCATGGAAAGAAC+AGG | + | 42453:4198-4217 | MS.gene042882:CDS | 40.0% | |
| GGATCCTTGATTCATCTTTG+TGG | + | 42453:3501-3520 | MS.gene042882:CDS | 40.0% | |
| GGCTCAGGTGTATTCTATAA+CGG | + | 42453:3414-3433 | MS.gene042882:CDS | 40.0% | |
| GTCAATTTGACGAGTTGCAA+AGG | + | 42453:3480-3499 | MS.gene042882:CDS | 40.0% | |
| GTTCAGCAGGTTATTGTAGT+GGG | + | 42453:3847-3866 | MS.gene042882:CDS | 40.0% | |
| GTTCATTACTCGACAGTGTT+TGG | + | 42453:4583-4602 | MS.gene042882:CDS | 40.0% | |
| GTTGAAACAGATCTACCGAA+TGG | + | 42453:4029-4048 | MS.gene042882:intron | 40.0% | |
| TAAGTTTGCACGCAGAAGTT+TGG | - | 42453:4498-4517 | MS.gene042882:intergenic | 40.0% | |
| TGAGTTGTGTAAGGACCTAA+AGG | - | 42453:4830-4849 | MS.gene042882:intergenic | 40.0% | |
| TGTGAAGGTTTCGATAGTAG+TGG | - | 42453:3558-3577 | MS.gene042882:intergenic | 40.0% | |
| TTCAGCAGGTTATTGTAGTG+GGG | + | 42453:3848-3867 | MS.gene042882:CDS | 40.0% | |
| ! | ACCACCTGAAGTGCTAAATA+CGG | - | 42453:3462-3481 | MS.gene042882:intergenic | 40.0% |
| ! | ATCACCAAAAGGCTTTTTGC+AGG | + | 42453:3059-3078 | MS.gene042882:CDS | 40.0% |
| ! | CCATTTTGCAAAATCAGTCC+AGG | + | 42453:3825-3844 | MS.gene042882:CDS | 40.0% |
| ! | GAAACATTGATTGCAGAAGC+TGG | + | 42453:3297-3316 | MS.gene042882:CDS | 40.0% |
| !! | AATCTATTTCTGGTGTCTGG+TGG | - | 42453:3702-3721 | MS.gene042882:intergenic | 40.0% |
| !! | ACCAATCTATTTCTGGTGTC+TGG | - | 42453:3705-3724 | MS.gene042882:intergenic | 40.0% |
| !! | CCTGGACTGATTTTGCAAAA+TGG | - | 42453:3828-3847 | MS.gene042882:intergenic | 40.0% |
| AAAATCAGTCCAGGTTCAGC+AGG | + | 42453:3834-3853 | MS.gene042882:CDS | 45.0% | |
| AAAGGGGGATCATCACCAAA+AGG | + | 42453:3048-3067 | MS.gene042882:CDS | 45.0% | |
| AAGCTCCACCTAGACCTTTA+GGG | + | 42453:2974-2993 | MS.gene042882:CDS | 45.0% | |
| ACCGTATTTAGCACTTCAGG+TGG | + | 42453:3458-3477 | MS.gene042882:CDS | 45.0% | |
| ATGCGCAATGGCTTCTTTCT+CGG | - | 42453:3793-3812 | MS.gene042882:intergenic | 45.0% | |
| ATGCTTCACCACCAGATTCT+TGG | - | 42453:4541-4560 | MS.gene042882:intergenic | 45.0% | |
| CACACCGTATTTAGCACTTC+AGG | + | 42453:3455-3474 | MS.gene042882:CDS | 45.0% | |
| CATTACTCGACAGTGTTTGG+AGG | + | 42453:4586-4605 | MS.gene042882:CDS | 45.0% | |
| CGGTTCAGCTACATTCAGTA+GGG | + | 42453:4301-4320 | MS.gene042882:CDS | 45.0% | |
| CTACAATAACCTGCTGAACC+TGG | - | 42453:3846-3865 | MS.gene042882:intergenic | 45.0% | |
| GAGTGAAGAACTCCATGTTC+CGG | + | 42453:4088-4107 | MS.gene042882:CDS | 45.0% | |
| GGTTCAGCAGGTTATTGTAG+TGG | + | 42453:3846-3865 | MS.gene042882:CDS | 45.0% | |
| GTATGTGGTGTTTATCTCCC+GGG | - | 42453:4427-4446 | MS.gene042882:intergenic | 45.0% | |
| GTGAAAACACGTGGATGTGA+AGG | - | 42453:3573-3592 | MS.gene042882:intergenic | 45.0% | |
| TCGGTTCAGCTACATTCAGT+AGG | + | 42453:4300-4319 | MS.gene042882:CDS | 45.0% | |
| TGAGGAGACTGATACTCAGA+CGG | + | 42453:2891-2910 | MS.gene042882:CDS | 45.0% | |
| TTCAGTAGGGATGTTCTCGA+TGG | + | 42453:4314-4333 | MS.gene042882:CDS | 45.0% | |
| TTCTTATAGCTTCGGTACGG+AGG | - | 42453:3621-3640 | MS.gene042882:intergenic | 45.0% | |
| TTGCCAAACCCTAAAGGTCT+AGG | - | 42453:2985-3004 | MS.gene042882:intergenic | 45.0% | |
| ! | ACTTTCTATTGCAGCATCGG+AGG | + | 42453:3233-3252 | MS.gene042882:CDS | 45.0% |
| ! | AGAGCCTGCAAAAAGCCTTT+TGG | - | 42453:3066-3085 | MS.gene042882:intergenic | 45.0% |
| !! | AGTGCTGATTGTGCTGAACA+CGG | + | 42453:4244-4263 | MS.gene042882:CDS | 45.0% |
| !! | TAGATAGTGGAGCTAACGAG+AGG | + | 42453:2932-2951 | MS.gene042882:CDS | 45.0% |
| AAGAGGAGATCGACGTTGCT+CGG | + | 42453:2797-2816 | MS.gene042882:CDS | 50.0% | |
| ACTTGTCGATAAGCACGACC+CGG | + | 42453:4406-4425 | MS.gene042882:CDS | 50.0% | |
| AGAGTCGGAGTGAAAACACG+TGG | - | 42453:3582-3601 | MS.gene042882:intergenic | 50.0% | |
| ATAGCTTCGGTACGGAGGTT+TGG | - | 42453:3616-3635 | MS.gene042882:intergenic | 50.0% | |
| CAAGCTCCACCTAGACCTTT+AGG | + | 42453:2973-2992 | MS.gene042882:CDS | 50.0% | |
| CCAAACCCTAAAGGTCTAGG+TGG | - | 42453:2982-3001 | MS.gene042882:intergenic | 50.0% | |
| GAGCCATGACGCAAAAGAGT+AGG | - | 42453:3399-3418 | MS.gene042882:intergenic | 50.0% | |
| GATTGTGCTGAACACGGTCA+TGG | + | 42453:4250-4269 | MS.gene042882:CDS | 50.0% | |
| GTGCATGGAAAGAACAGGAC+TGG | + | 42453:4203-4222 | MS.gene042882:CDS | 50.0% | |
| GTGTCTCAAAAGGTCGGTCA+AGG | - | 42453:2683-2702 | MS.gene042882:intergenic | 50.0% | |
| TAGCTTCGGTACGGAGGTTT+GGG | - | 42453:3615-3634 | MS.gene042882:intergenic | 50.0% | |
| TGAACACGGTCATGGCTGAA+AGG | + | 42453:4258-4277 | MS.gene042882:CDS | 50.0% | |
| TGAAGAACTCCATGTTCCGG+AGG | + | 42453:4091-4110 | MS.gene042882:CDS | 50.0% | |
| ! | ACTCTTTTGCGTCATGGCTC+AGG | + | 42453:3399-3418 | MS.gene042882:CDS | 50.0% |
| ! | GAGCCTACTCTTTTGCGTCA+TGG | + | 42453:3393-3412 | MS.gene042882:CDS | 50.0% |
| ! | GGAAGCGTGTCTCAAAAGGT+CGG | - | 42453:2689-2708 | MS.gene042882:intergenic | 50.0% |
| ! | GTCTAGAACCATTCCACCAG+CGG | - | 42453:3010-3029 | MS.gene042882:intergenic | 50.0% |
| ! | TTCCGGAAGCGTGTCTCAAA+AGG | - | 42453:2693-2712 | MS.gene042882:intergenic | 50.0% |
| !! | CCACCTAGACCTTTAGGGTT+TGG | + | 42453:2979-2998 | MS.gene042882:CDS | 50.0% |
| !!! | GACCTTTTGAGACACGCTTC+CGG | + | 42453:2688-2707 | MS.gene042882:CDS | 50.0% |
| CTTGTCGATAAGCACGACCC+GGG | + | 42453:4407-4426 | MS.gene042882:CDS | 55.0% | |
| TGGCTTCTTTCTCGGCACTG+AGG | - | 42453:3785-3804 | MS.gene042882:intergenic | 55.0% | |
| TTAGGGTTTGGCAACACCGC+TGG | + | 42453:2991-3010 | MS.gene042882:CDS | 55.0% | |
| ! | GCTTCTTTCTCGGCACTGAG+GGG | - | 42453:3783-3802 | MS.gene042882:intergenic | 55.0% |
| ! | GGCTTCTTTCTCGGCACTGA+GGG | - | 42453:3784-3803 | MS.gene042882:intergenic | 55.0% |
| ! | TACGGAGGTTTGGGTAGTGG+CGG | - | 42453:3606-3625 | MS.gene042882:intergenic | 55.0% |
| ! | TTTCTGGTGTCTGGTGGTGC+AGG | - | 42453:3696-3715 | MS.gene042882:intergenic | 55.0% |
| !! | GCGGTGTTGCCAAACCCTAA+AGG | - | 42453:2991-3010 | MS.gene042882:intergenic | 55.0% |
| CGGTACGGAGGTTTGGGTAG+TGG | - | 42453:3609-3628 | MS.gene042882:intergenic | 60.0% | |
| TCTCCATCTGTGGCAGCCTC+CGG | - | 42453:4110-4129 | MS.gene042882:intergenic | 60.0% | |
| TGGCAACACCGCTGGTGGAA+TGG | + | 42453:2999-3018 | MS.gene042882:CDS | 60.0% | |
| ! | GTGTCTGGTGGTGCAGGAAG+TGG | - | 42453:3690-3709 | MS.gene042882:intergenic | 60.0% |
| ! | TCTGGTGGTGCAGGAAGTGG+TGG | - | 42453:3687-3706 | MS.gene042882:intergenic | 60.0% |
| ! | TGCAGGAAGTGGTGGAGGCA+AGG | - | 42453:3679-3698 | MS.gene042882:intergenic | 60.0% |
| ! | TTGGGTAGTGGCGGCAGAGT+CGG | - | 42453:3597-3616 | MS.gene042882:intergenic | 60.0% |
| CTGTGGCAGCCTCCGGAACA+TGG | - | 42453:4103-4122 | MS.gene042882:intergenic | 65.0% | |
| GGAGGCTGCCACAGATGGAG+AGG | + | 42453:4109-4128 | MS.gene042882:CDS | 65.0% | |
| GGGTTTGGCAACACCGCTGG+TGG | + | 42453:2994-3013 | MS.gene042882:CDS | 65.0% | |
| GGTGGTGCAGGAAGTGGTGG+AGG | - | 42453:3684-3703 | MS.gene042882:intergenic | 65.0% | |
| GTTCCGGAGGCTGCCACAGA+TGG | + | 42453:4104-4123 | MS.gene042882:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42453 | gene | 2607 | 5051 | 2607 | ID=MS.gene042882 |
| 42453 | mRNA | 2607 | 5051 | 2607 | ID=MS.gene042882.t1;Parent=MS.gene042882 |
| 42453 | exon | 2607 | 3939 | 2607 | ID=MS.gene042882.t1.exon1;Parent=MS.gene042882.t1 |
| 42453 | CDS | 2607 | 3939 | 2607 | ID=cds.MS.gene042882.t1;Parent=MS.gene042882.t1 |
| 42453 | exon | 4072 | 5051 | 4072 | ID=MS.gene042882.t1.exon2;Parent=MS.gene042882.t1 |
| 42453 | CDS | 4072 | 5051 | 4072 | ID=cds.MS.gene042882.t1;Parent=MS.gene042882.t1 |
| Gene Sequence |
| Protein sequence |
