Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042961.t1 | XP_013453074.1 | 95.7 | 798 | 31 | 1 | 1 | 795 | 1 | 798 | 0.00E+00 | 1396.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042961.t1 | Q55GS2 | 37.6 | 615 | 350 | 13 | 4 | 608 | 2 | 592 | 3.1e-110 | 401.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042961.t1 | A0A072UBV6 | 95.7 | 798 | 31 | 1 | 1 | 795 | 1 | 798 | 0.0e+00 | 1396.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042961.t1 | MTR_6g086565 | 99.123 | 798 | 4 | 1 | 1 | 795 | 1 | 798 | 0.0 | 1610 |
| MS.gene042961.t1 | MTR_6g086565 | 99.354 | 619 | 4 | 0 | 1 | 619 | 1 | 619 | 0.0 | 1257 |
| MS.gene042961.t1 | MTR_1g078330 | 88.421 | 190 | 22 | 0 | 1 | 190 | 1 | 190 | 6.51e-119 | 357 |
| MS.gene042961.t1 | MTR_1g078370 | 76.329 | 207 | 46 | 1 | 587 | 793 | 1 | 204 | 3.44e-92 | 288 |
| MS.gene042961.t1 | MTR_4g030910 | 22.995 | 561 | 367 | 14 | 58 | 575 | 96 | 634 | 3.33e-26 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042961.t1 | AT2G40730 | 79.000 | 800 | 158 | 7 | 1 | 793 | 1 | 797 | 0.0 | 1212 |
| MS.gene042961.t1 | AT1G71410 | 20.940 | 468 | 309 | 10 | 58 | 483 | 96 | 544 | 1.12e-18 | 91.7 |
| MS.gene042961.t1 | AT1G71410 | 20.940 | 468 | 309 | 10 | 58 | 483 | 96 | 544 | 1.12e-18 | 91.7 |
| MS.gene042961.t1 | AT1G22870 | 21.165 | 515 | 344 | 10 | 58 | 530 | 96 | 590 | 1.13e-18 | 91.7 |
| MS.gene042961.t1 | AT1G22870 | 21.165 | 515 | 344 | 10 | 58 | 530 | 96 | 590 | 1.18e-18 | 91.7 |
| MS.gene042961.t1 | AT1G22870 | 21.698 | 424 | 299 | 7 | 133 | 530 | 9 | 425 | 2.19e-17 | 87.4 |
Find 227 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCAACCTTGGTGGAATTT+TGG | 0.064969 | 6.4:-59880952 | None:intergenic |
| TTAGCTTCTGCCCTTGAATT+TGG | 0.180640 | 6.4:+59874173 | MS.gene042961:CDS |
| ATCCGCTGAGCACCTAATTT+TGG | 0.188714 | 6.4:-59881161 | None:intergenic |
| TTTGACTGCATTGTTGAAAA+TGG | 0.188813 | 6.4:+59874214 | MS.gene042961:CDS |
| CTCCATGGGCCATTGATTCT+TGG | 0.193517 | 6.4:+59872006 | MS.gene042961:CDS |
| TGAAGAAATGACAAAATATT+TGG | 0.211866 | 6.4:-59870628 | None:intergenic |
| ATCCACCAACAACTTCTTTC+AGG | 0.230681 | 6.4:-59870092 | None:intergenic |
| TTATCTGAAAGTGGCATTAC+AGG | 0.240664 | 6.4:-59870715 | None:intergenic |
| GGAAGCTGCTCTGCTAAATT+TGG | 0.248475 | 6.4:-59874018 | None:intergenic |
| ACTTGATTATTCAGGCATTA+TGG | 0.255952 | 6.4:+59876267 | MS.gene042961:intron |
| CCAAGTAAACTTGCATTTCC+TGG | 0.262803 | 6.4:-59877790 | None:intergenic |
| AAACCTGCTGCTCCAAAATT+AGG | 0.271088 | 6.4:+59881149 | MS.gene042961:CDS |
| CTGTCTCAAAGGACCTTGTC+TGG | 0.286397 | 6.4:+59875584 | MS.gene042961:CDS |
| CCAGGAAATGCAAGTTTACT+TGG | 0.288202 | 6.4:+59877790 | MS.gene042961:CDS |
| TCCATGGGCCATTGATTCTT+GGG | 0.291032 | 6.4:+59872007 | MS.gene042961:CDS |
| GTTGTCGAATTCAAATTTAA+AGG | 0.302494 | 6.4:-59881035 | None:intergenic |
| CTGAGTAGCCGCTGGTAATC+TGG | 0.310087 | 6.4:-59873077 | None:intergenic |
| CATTGTTGAAAATGGGTTCC+TGG | 0.312737 | 6.4:+59874222 | MS.gene042961:CDS |
| TCTCAAGTCCATGTTAGTTC+TGG | 0.320181 | 6.4:+59874665 | MS.gene042961:CDS |
| ACCCTTCCGCTTGGGGCTCT+TGG | 0.325303 | 6.4:+59870160 | MS.gene042961:CDS |
| CTTTCTATTATAGACAAATA+TGG | 0.328878 | 6.4:+59877726 | MS.gene042961:intron |
| GCCACTTTCAGATAAGATTC+AGG | 0.330183 | 6.4:+59870723 | MS.gene042961:CDS |
| CTTAGCAGCTGGCCGAGGTC+GGG | 0.342150 | 6.4:+59881121 | MS.gene042961:CDS |
| AAACAGTGATGTTCGATCTA+AGG | 0.342598 | 6.4:+59876998 | MS.gene042961:intron |
| CTTTGTCTATTGCAGGTTCA+TGG | 0.345575 | 6.4:+59871414 | MS.gene042961:intron |
| TCAGATAAGATTCAGGAGTT+AGG | 0.347337 | 6.4:+59870730 | MS.gene042961:CDS |
| CGAACCTTACCCTTCCGCTT+GGG | 0.349078 | 6.4:+59870152 | MS.gene042961:CDS |
| AAAGAAGTTGTTGGTGGATC+TGG | 0.357725 | 6.4:+59870096 | MS.gene042961:CDS |
| GATGGAAGTTTATCAATTCC+AGG | 0.362464 | 6.4:+59877772 | MS.gene042961:CDS |
| AGCTCAAGCTGTTGATGAAC+AGG | 0.365464 | 6.4:+59874457 | MS.gene042961:CDS |
| CCGACCTCGGCCAGCTGCTA+AGG | 0.373064 | 6.4:-59881120 | None:intergenic |
| CAGCTCCTGCGCCCACTACA+AGG | 0.373259 | 6.4:+59881090 | MS.gene042961:CDS |
| CTCCTACATCAACGGATGGC+TGG | 0.376358 | 6.4:+59880325 | MS.gene042961:CDS |
| CTAATCTATGAGCTGTTCTC+TGG | 0.378549 | 6.4:+59872847 | MS.gene042961:CDS |
| TCCTACATCAACGGATGGCT+GGG | 0.381579 | 6.4:+59880326 | MS.gene042961:CDS |
| GTTTACCCTCATGTTGCTAC+TGG | 0.382745 | 6.4:+59874606 | MS.gene042961:CDS |
| AATTTCATTGATGTCATAGT+TGG | 0.383892 | 6.4:-59876308 | None:intergenic |
| GGTAGACACAATACATTTCA+TGG | 0.388081 | 6.4:+59873942 | MS.gene042961:CDS |
| GCCATTGATTCTTGGGGAAT+GGG | 0.389642 | 6.4:+59872014 | MS.gene042961:CDS |
| TAAGGTTCGCCGATGTTGTA+TGG | 0.391413 | 6.4:-59870138 | None:intergenic |
| AAAGCATCTATCGAAGTTAC+AGG | 0.393427 | 6.4:+59875616 | MS.gene042961:CDS |
| CGGATAAACCGGACATCATC+AGG | 0.394990 | 6.4:+59881179 | MS.gene042961:CDS |
| CTCCGAATTGTTCAATATGT+TGG | 0.396831 | 6.4:-59874424 | None:intergenic |
| CAGGGATGAATATTATGCTT+GGG | 0.398038 | 6.4:+59871261 | MS.gene042961:intron |
| ACAAATATGGCAGAGACTAC+TGG | 0.399143 | 6.4:+59877739 | MS.gene042961:CDS |
| ATTGTGAGTACAACAACATT+AGG | 0.400000 | 6.4:-59876346 | None:intergenic |
| GCAAAGAGTTTAATTATTGT+TGG | 0.401711 | 6.4:-59874368 | None:intergenic |
| CGGTGTTAATTTCAGGATGA+TGG | 0.402052 | 6.4:+59870264 | MS.gene042961:intron |
| CTCCAACATATTGAACAATT+CGG | 0.407638 | 6.4:+59874422 | MS.gene042961:CDS |
| TTTAAAGGTCTTGATGTTGT+TGG | 0.410922 | 6.4:-59881020 | None:intergenic |
| TCAAGGGCAGAAGCTAATAA+AGG | 0.423515 | 6.4:-59874167 | None:intergenic |
| TTCAACAATGCAGTCAAAGC+AGG | 0.425072 | 6.4:-59874209 | None:intergenic |
| TCGGCCAGCTGCTAAGGGCC+TGG | 0.432686 | 6.4:-59881114 | None:intergenic |
| GCATGGTGGTCAGTGAAATC+TGG | 0.432933 | 6.4:-59880294 | None:intergenic |
| TTAGCAGCTGGCCGAGGTCG+GGG | 0.437675 | 6.4:+59881122 | MS.gene042961:CDS |
| GATGTTCTATCAGAGTTTGA+TGG | 0.438526 | 6.4:+59871498 | MS.gene042961:CDS |
| AGGGCCAGGCCCTTAGCAGC+TGG | 0.442542 | 6.4:+59881110 | MS.gene042961:CDS |
| CTGGCCCTTGTAGTGGGCGC+AGG | 0.445959 | 6.4:-59881095 | None:intergenic |
| GGCCATTGATTCTTGGGGAA+TGG | 0.447612 | 6.4:+59872013 | MS.gene042961:CDS |
| GACACGGACAGCTCGATCAT+TGG | 0.450921 | 6.4:-59874393 | None:intergenic |
| CTAGAACTCACAGAAGCAAC+TGG | 0.451326 | 6.4:-59879177 | None:intergenic |
| TCTTCATCCCTGCTCAACCT+TGG | 0.453545 | 6.4:-59880963 | None:intergenic |
| CCTTAGCAGCTGGCCGAGGT+CGG | 0.453563 | 6.4:+59881120 | MS.gene042961:CDS |
| AAATTCCACCAAGGTTGAGC+AGG | 0.454216 | 6.4:+59880955 | MS.gene042961:CDS |
| ATGAGCTCCTTGACTCTAAA+GGG | 0.459180 | 6.4:+59879135 | MS.gene042961:CDS |
| TAGGTGCTCAGCGGATAAAC+CGG | 0.460603 | 6.4:+59881168 | MS.gene042961:CDS |
| CCGCAGCTAAATGTCCATCC+TGG | 0.462680 | 6.4:-59870326 | None:intergenic |
| AGGCCCTTAGCAGCTGGCCG+AGG | 0.465336 | 6.4:+59881116 | MS.gene042961:CDS |
| TGCAATATTTCCTAGCAAGA+TGG | 0.466669 | 6.4:-59875952 | None:intergenic |
| TTTGAAAGATAGTGTTGAGA+AGG | 0.467964 | 6.4:+59873975 | MS.gene042961:CDS |
| ATTGATGTCATAGTTGGAAC+TGG | 0.469305 | 6.4:-59876302 | None:intergenic |
| ATTCAGGAGTTAGGTCTTGA+AGG | 0.470304 | 6.4:+59870739 | MS.gene042961:CDS |
| TGTTGTTGTCACGCCAACTT+TGG | 0.470386 | 6.4:+59871455 | MS.gene042961:CDS |
| GCGAACCTTACCCTTCCGCT+TGG | 0.471772 | 6.4:+59870151 | MS.gene042961:CDS |
| CATTAGAAGATGTTGGTGTA+AGG | 0.476759 | 6.4:-59879203 | None:intergenic |
| AAGGGCCTGGCCCTTGTAGT+GGG | 0.480173 | 6.4:-59881101 | None:intergenic |
| ATGTTCTATCAGAGTTTGAT+GGG | 0.482527 | 6.4:+59871499 | MS.gene042961:CDS |
| GTTGTTGGTGGATCTGGAAC+TGG | 0.482994 | 6.4:+59870102 | MS.gene042961:CDS |
| CTGCGCCCACTACAAGGGCC+AGG | 0.483015 | 6.4:+59881096 | MS.gene042961:CDS |
| TTGACTGCATTGTTGAAAAT+GGG | 0.485246 | 6.4:+59874215 | MS.gene042961:CDS |
| CAAATAATAAATCACCTGTC+AGG | 0.485509 | 6.4:-59876373 | None:intergenic |
| GGTTCATGGCAATGTTTGCT+TGG | 0.485983 | 6.4:+59871428 | MS.gene042961:intron |
| TCCTGAATCTTATCTGAAAG+TGG | 0.486236 | 6.4:-59870724 | None:intergenic |
| CAACCTGTTTCACAGACAAA+AGG | 0.486565 | 6.4:+59880483 | MS.gene042961:CDS |
| CGACCTCGGCCAGCTGCTAA+GGG | 0.488359 | 6.4:-59881119 | None:intergenic |
| GTTGGCTTTGTTTCTTCAAG+TGG | 0.490626 | 6.4:-59880414 | None:intergenic |
| CATTTAGCTGCGGGTCGTAA+TGG | 0.491773 | 6.4:+59870336 | MS.gene042961:CDS |
| TATGAGCTCCTTGACTCTAA+AGG | 0.491816 | 6.4:+59879134 | MS.gene042961:CDS |
| ACATCCCTCCTGATGATGTC+CGG | 0.492711 | 6.4:-59881187 | None:intergenic |
| GGTCTTGATGTTGTTGGAGC+GGG | 0.492740 | 6.4:-59881014 | None:intergenic |
| TAAGGGCCTGGCCCTTGTAG+TGG | 0.492890 | 6.4:-59881102 | None:intergenic |
| CAGCAGCTGAACCAAATTCA+AGG | 0.493179 | 6.4:-59874184 | None:intergenic |
| TTGTCACGCCAACTTTGGAC+TGG | 0.493752 | 6.4:+59871460 | MS.gene042961:CDS |
| TCGTCAGATTGTGTTAAAGA+AGG | 0.495220 | 6.4:+59874041 | MS.gene042961:CDS |
| GAGCCCCAAGCGGAAGGGTA+AGG | 0.495780 | 6.4:-59870156 | None:intergenic |
| GGGATGAAGATGAAGATTTG+TGG | 0.496658 | 6.4:+59880976 | MS.gene042961:CDS |
| CAAATATGGCAGAGACTACT+GGG | 0.496846 | 6.4:+59877740 | MS.gene042961:CDS |
| ATAATTGATTGTTACCTTGG+AGG | 0.496898 | 6.4:-59870199 | None:intergenic |
| GCAGGGATGAATATTATGCT+TGG | 0.497318 | 6.4:+59871260 | MS.gene042961:intron |
| CAACTAATGATGATGATCCA+TGG | 0.500400 | 6.4:+59881057 | MS.gene042961:CDS |
| ACCCATTCCCCAAGAATCAA+TGG | 0.501604 | 6.4:-59872015 | None:intergenic |
| TCATCCCTGCTCAACCTTGG+TGG | 0.502638 | 6.4:-59880960 | None:intergenic |
| TGTGAAACAGGTTGAACAAC+TGG | 0.506071 | 6.4:-59880474 | None:intergenic |
| TTTCCACCTGCTAGAGGAGC+AGG | 0.506104 | 6.4:+59876152 | MS.gene042961:CDS |
| TCCGTTGATGTAGGAGATGT+AGG | 0.506786 | 6.4:-59880318 | None:intergenic |
| GGAGCTGCAATGGCAGCCCA+TGG | 0.507768 | 6.4:-59881074 | None:intergenic |
| CTAATACCTGCTCCTCTAGC+AGG | 0.508317 | 6.4:-59876158 | None:intergenic |
| GAACTCCTCAGCTGAAAGCC+AGG | 0.510223 | 6.4:-59874240 | None:intergenic |
| GAGAAGTCTGACCTTGGGAA+TGG | 0.510862 | 6.4:-59872911 | None:intergenic |
| GCTTGAATGTTAGTAAGAGC+TGG | 0.513816 | 6.4:-59880438 | None:intergenic |
| GAACCTTACCCTTCCGCTTG+GGG | 0.515759 | 6.4:+59870153 | MS.gene042961:CDS |
| AAATTCCTGAAAGAAGTTGT+TGG | 0.517801 | 6.4:+59870087 | MS.gene042961:CDS |
| TGGAGTTTCCAGTCCAAAGT+TGG | 0.518208 | 6.4:-59871468 | None:intergenic |
| CGGAGCTAGCAAAATCCGAC+TGG | 0.519464 | 6.4:+59871964 | MS.gene042961:CDS |
| CAGGTTTGGCTCCCCGACCT+CGG | 0.519595 | 6.4:-59881133 | None:intergenic |
| CAGGATGGACATTTAGCTGC+GGG | 0.519763 | 6.4:+59870327 | MS.gene042961:CDS |
| GGATGAAGATGAAGATTTGT+GGG | 0.520644 | 6.4:+59880977 | MS.gene042961:CDS |
| CCTACATCAACGGATGGCTG+GGG | 0.521802 | 6.4:+59880327 | MS.gene042961:CDS |
| CCGTTGATGTAGGAGATGTA+GGG | 0.523241 | 6.4:-59880317 | None:intergenic |
| ATCATTAAGCATACCTGAGC+TGG | 0.523577 | 6.4:-59879226 | None:intergenic |
| TACTCACAATTGATCCTGAC+AGG | 0.528935 | 6.4:+59876359 | MS.gene042961:CDS |
| GACATCCTCTACGCAAATGC+TGG | 0.529946 | 6.4:+59871530 | MS.gene042961:CDS |
| AGCCAAGAGCCCCAAGCGGA+AGG | 0.530407 | 6.4:-59870162 | None:intergenic |
| CGCAGCTAAATGTCCATCCT+GGG | 0.530668 | 6.4:-59870325 | None:intergenic |
| CCATGGGCCATTGATTCTTG+GGG | 0.532546 | 6.4:+59872008 | MS.gene042961:CDS |
| CAGGAAATGCAAGTTTACTT+GGG | 0.535552 | 6.4:+59877791 | MS.gene042961:CDS |
| GGGTTCCTGGCTTTCAGCTG+AGG | 0.537536 | 6.4:+59874235 | MS.gene042961:CDS |
| TAAATGTCCATCCTGGGCAT+TGG | 0.537721 | 6.4:-59870319 | None:intergenic |
| TTCCTGAAAGAAGTTGTTGG+TGG | 0.541191 | 6.4:+59870090 | MS.gene042961:CDS |
| GATGTATTTAATCTACGAGA+AGG | 0.543062 | 6.4:-59873107 | None:intergenic |
| TCAACAATGCAGTCAAAGCA+GGG | 0.543212 | 6.4:-59874208 | None:intergenic |
| ACACGGATAGGTGCTGTTGA+AGG | 0.546664 | 6.4:-59880261 | None:intergenic |
| AGCTGAGGAGTTCCGTGTCA+AGG | 0.546667 | 6.4:+59874250 | MS.gene042961:CDS |
| ACAAATACAACCATCTTGCT+AGG | 0.548057 | 6.4:+59875942 | MS.gene042961:CDS |
| TGTTGGAGCGGGAGCTGCTA+TGG | 0.549412 | 6.4:-59881003 | None:intergenic |
| AGGCTTGCCCTTTAGAGTCA+AGG | 0.549491 | 6.4:-59879142 | None:intergenic |
| CATGTTAGTTCTGGCTCCGA+AGG | 0.549605 | 6.4:+59874674 | MS.gene042961:CDS |
| GCCAAGAGCCCCAAGCGGAA+GGG | 0.551717 | 6.4:-59870161 | None:intergenic |
| AGTGGGCGCAGGAGCTGCAA+TGG | 0.552530 | 6.4:-59881084 | None:intergenic |
| ATTGTTCAATATGTTGGAGA+AGG | 0.552863 | 6.4:-59874418 | None:intergenic |
| CTGCTAAATTTGGAAGCTTG+CGG | 0.553281 | 6.4:-59874008 | None:intergenic |
| ATCATTATTTAAGAAGCTCA+CGG | 0.554036 | 6.4:-59871305 | None:intergenic |
| TGCTCCTCTAGCAGGTGGAA+AGG | 0.555846 | 6.4:-59876150 | None:intergenic |
| AAGGTTCGCCGATGTTGTAT+GGG | 0.556759 | 6.4:-59870137 | None:intergenic |
| CTGATAGAACATCAAAAGCA+TGG | 0.560392 | 6.4:-59871488 | None:intergenic |
| GCAACTGGAGCATGATCAGA+AGG | 0.561662 | 6.4:-59879162 | None:intergenic |
| AGCTCCTGCGCCCACTACAA+GGG | 0.562278 | 6.4:+59881091 | MS.gene042961:CDS |
| ATTGCAAGCTACTTAAACGA+AGG | 0.562326 | 6.4:+59875969 | MS.gene042961:CDS |
| CTACATCAACGGATGGCTGG+GGG | 0.562918 | 6.4:+59880328 | MS.gene042961:CDS |
| TTGCAAGCTACTTAAACGAA+GGG | 0.564838 | 6.4:+59875970 | MS.gene042961:CDS |
| CATAATTGCAGCTGTCTCAA+AGG | 0.565208 | 6.4:+59875573 | MS.gene042961:intron |
| ACATCTTCTAATGCCAGCTC+AGG | 0.570241 | 6.4:+59879213 | MS.gene042961:CDS |
| CTTCGGAGCCAGAACTAACA+TGG | 0.570780 | 6.4:-59874673 | None:intergenic |
| CCCTACATCTCCTACATCAA+CGG | 0.571117 | 6.4:+59880317 | MS.gene042961:CDS |
| TAATTAAGAAGTCTCCTCCA+TGG | 0.572719 | 6.4:+59871991 | MS.gene042961:CDS |
| CTTCTTAATTACAGCCCAGT+CGG | 0.573033 | 6.4:-59871979 | None:intergenic |
| ATGTAGGAGATGTAGGGGCA+TGG | 0.573984 | 6.4:-59880311 | None:intergenic |
| ATGTTAGTAAGAGCTGGAGT+TGG | 0.578383 | 6.4:-59880432 | None:intergenic |
| ATTAGAAGATGTTGGTGTAA+GGG | 0.578476 | 6.4:-59879202 | None:intergenic |
| TGTCTCAAAGGACCTTGTCT+GGG | 0.579463 | 6.4:+59875585 | MS.gene042961:CDS |
| CTGAAAATGACAAGGATGGG+TGG | 0.581469 | 6.4:+59880379 | MS.gene042961:CDS |
| TCATCATCGCGGTACCTCCA+AGG | 0.585096 | 6.4:+59870185 | MS.gene042961:CDS |
| AAGTCTGACCTTGGGAATGG+AGG | 0.585606 | 6.4:-59872908 | None:intergenic |
| AACCTGAAAATGACAAGGAT+GGG | 0.586228 | 6.4:+59880376 | MS.gene042961:CDS |
| ATTATCTGGAACCAATGCCC+AGG | 0.586298 | 6.4:+59870308 | MS.gene042961:CDS |
| CCCCAGCCATCCGTTGATGT+AGG | 0.587906 | 6.4:-59880327 | None:intergenic |
| GCGTGGAACTGAGTAGCCGC+TGG | 0.590412 | 6.4:-59873085 | None:intergenic |
| AACTAATGATGATGATCCAT+GGG | 0.594078 | 6.4:+59881058 | MS.gene042961:CDS |
| TCTGGAACCAATGCCCAGGA+TGG | 0.595289 | 6.4:+59870312 | MS.gene042961:CDS |
| TTTCCATTCAGCAATATGCA+TGG | 0.596821 | 6.4:+59871916 | MS.gene042961:intron |
| AATTAAGAAGTCTCCTCCAT+GGG | 0.608185 | 6.4:+59871992 | MS.gene042961:CDS |
| AGGGATGAATATTATGCTTG+GGG | 0.608296 | 6.4:+59871262 | MS.gene042961:intron |
| CCCCAAGAATCAATGGCCCA+TGG | 0.613929 | 6.4:-59872008 | None:intergenic |
| AATTCCACCAAGGTTGAGCA+GGG | 0.616045 | 6.4:+59880956 | MS.gene042961:CDS |
| AATTATTAGTTACCTTGACA+CGG | 0.618397 | 6.4:-59874262 | None:intergenic |
| CTTTAATAGTGACCCAGACA+AGG | 0.619287 | 6.4:-59875597 | None:intergenic |
| GATACCTTTCCACCTGCTAG+AGG | 0.619442 | 6.4:+59876146 | MS.gene042961:CDS |
| AGCAGCTGAACCAAATTCAA+GGG | 0.620239 | 6.4:-59874183 | None:intergenic |
| AATTACCAGCATTTGCGTAG+AGG | 0.620808 | 6.4:-59871535 | None:intergenic |
| GAACCTGAAAATGACAAGGA+TGG | 0.621311 | 6.4:+59880375 | MS.gene042961:CDS |
| TATGTTGGAGAAGGCTGACA+CGG | 0.621891 | 6.4:-59874409 | None:intergenic |
| ATACCTGCTCCTCTAGCAGG+TGG | 0.623925 | 6.4:-59876155 | None:intergenic |
| ACATTCAAGCAGCTCAAAGA+CGG | 0.624681 | 6.4:+59880451 | MS.gene042961:CDS |
| GGTGTGGAATTTACACGGAT+AGG | 0.624750 | 6.4:-59880273 | None:intergenic |
| ACGGACAGCTCGATCATTGG+AGG | 0.625109 | 6.4:-59874390 | None:intergenic |
| ATTTAATCTACGAGAAGGCG+TGG | 0.626292 | 6.4:-59873102 | None:intergenic |
| CTCTGCTTCCAGATTACCAG+CGG | 0.627746 | 6.4:+59873069 | MS.gene042961:CDS |
| AGGTCTTGATGTTGTTGGAG+CGG | 0.630097 | 6.4:-59881015 | None:intergenic |
| GAGAAACCAGTAGCAACATG+AGG | 0.635595 | 6.4:-59874612 | None:intergenic |
| GCTAGAGAATGGAATTGATG+AGG | 0.638647 | 6.4:+59880353 | MS.gene042961:CDS |
| TACATCAACGGATGGCTGGG+GGG | 0.641241 | 6.4:+59880329 | MS.gene042961:CDS |
| CAACAATGCAGTCAAAGCAG+GGG | 0.641805 | 6.4:-59874207 | None:intergenic |
| TTCTTTAACACAATCTGACG+AGG | 0.643601 | 6.4:-59874039 | None:intergenic |
| GGCTCTTGGCTTCATCATCG+CGG | 0.646469 | 6.4:+59870174 | MS.gene042961:CDS |
| TGAAAATGACAAGGATGGGT+GGG | 0.647528 | 6.4:+59880380 | MS.gene042961:CDS |
| TGCAACACAATACAAATCAA+CGG | 0.647901 | 6.4:+59871944 | MS.gene042961:CDS |
| ACATCTCCTACATCAACGGA+TGG | 0.648116 | 6.4:+59880321 | MS.gene042961:CDS |
| TAACACTGCCTCCATTCCCA+AGG | 0.650706 | 6.4:+59872900 | MS.gene042961:CDS |
| GGCAAAGCAACACTACGAGA+AGG | 0.650955 | 6.4:+59877052 | MS.gene042961:CDS |
| CGTTGATGTAGGAGATGTAG+GGG | 0.651141 | 6.4:-59880316 | None:intergenic |
| GAAAGGTATCACGTAAAGCA+CGG | 0.652734 | 6.4:-59876133 | None:intergenic |
| AATCTGGTGTGGAATTTACA+CGG | 0.654113 | 6.4:-59880278 | None:intergenic |
| AGAAACCAGTAGCAACATGA+GGG | 0.659703 | 6.4:-59874611 | None:intergenic |
| CCAGGATGGACATTTAGCTG+CGG | 0.659961 | 6.4:+59870326 | MS.gene042961:CDS |
| GTGGTCAGTGAAATCTGGTG+TGG | 0.662798 | 6.4:-59880289 | None:intergenic |
| CTCCAAAATTAGGTGCTCAG+CGG | 0.663729 | 6.4:+59881159 | MS.gene042961:CDS |
| GGAGCTAGCAAAATCCGACT+GGG | 0.664324 | 6.4:+59871965 | MS.gene042961:CDS |
| ACATCAATGAAATTGCCACT+CGG | 0.673599 | 6.4:+59876317 | MS.gene042961:CDS |
| TGCAAGCTACTTAAACGAAG+GGG | 0.676042 | 6.4:+59875971 | MS.gene042961:CDS |
| GAGCTGGCATTAGAAGATGT+TGG | 0.677571 | 6.4:-59879210 | None:intergenic |
| TAGGAGATGTAGGGGCATGG+TGG | 0.678043 | 6.4:-59880308 | None:intergenic |
| CGCGACCCAAAATTCCACCA+AGG | 0.678187 | 6.4:+59880946 | MS.gene042961:CDS |
| AGAGATCTCCCATACAACAT+CGG | 0.678627 | 6.4:+59870129 | MS.gene042961:CDS |
| TTTGAAGTTGAGCAAAACAG+AGG | 0.685379 | 6.4:+59872870 | MS.gene042961:CDS |
| ATAAACCGGACATCATCAGG+AGG | 0.688981 | 6.4:+59881182 | MS.gene042961:CDS |
| TCAAAGCTTATAGAAAACAG+TGG | 0.696006 | 6.4:+59873128 | MS.gene042961:CDS |
| TAAACCGGACATCATCAGGA+GGG | 0.696522 | 6.4:+59881183 | MS.gene042961:CDS |
| TGTTGTATGGGAGATCTCTG+AGG | 0.714551 | 6.4:-59870125 | None:intergenic |
| ATGAAGCCAAGAGCCCCAAG+CGG | 0.722990 | 6.4:-59870166 | None:intergenic |
| AACATTAGGAAGAATCCGAG+TGG | 0.723039 | 6.4:-59876332 | None:intergenic |
| GATGTCATAGTTGGAACTGG+TGG | 0.723344 | 6.4:-59876299 | None:intergenic |
| TAGGTCTTGAAGGTACACAA+AGG | 0.723793 | 6.4:+59870749 | MS.gene042961:CDS |
| CAAGAATCAATGGCCCATGG+AGG | 0.724818 | 6.4:-59872005 | None:intergenic |
| TGAGGAACCTGAAAATGACA+AGG | 0.725485 | 6.4:+59880371 | MS.gene042961:CDS |
| AAATATGGCAGAGACTACTG+GGG | 0.748805 | 6.4:+59877741 | MS.gene042961:CDS |
| GATGAAGATGAAGATTTGTG+GGG | 0.753066 | 6.4:+59880978 | MS.gene042961:CDS |
| AATATGGCAGAGACTACTGG+GGG | 0.765761 | 6.4:+59877742 | MS.gene042961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 59870081 | 59881211 | 59870081 | ID=MS.gene042961 |
| chr6.4 | mRNA | 59870081 | 59881211 | 59870081 | ID=MS.gene042961.t1;Parent=MS.gene042961 |
| chr6.4 | exon | 59870081 | 59870206 | 59870081 | ID=MS.gene042961.t1.exon1;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59870081 | 59870206 | 59870081 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59870279 | 59870377 | 59870279 | ID=MS.gene042961.t1.exon2;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59870279 | 59870377 | 59870279 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59870619 | 59870770 | 59870619 | ID=MS.gene042961.t1.exon3;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59870619 | 59870770 | 59870619 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59871264 | 59871336 | 59871264 | ID=MS.gene042961.t1.exon4;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59871264 | 59871336 | 59871264 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59871429 | 59871551 | 59871429 | ID=MS.gene042961.t1.exon5;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59871429 | 59871551 | 59871429 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59871927 | 59872035 | 59871927 | ID=MS.gene042961.t1.exon6;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59871927 | 59872035 | 59871927 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59872842 | 59872921 | 59872842 | ID=MS.gene042961.t1.exon7;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59872842 | 59872921 | 59872842 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59873068 | 59873149 | 59873068 | ID=MS.gene042961.t1.exon8;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59873068 | 59873149 | 59873068 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59873923 | 59874062 | 59873923 | ID=MS.gene042961.t1.exon9;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59873923 | 59874062 | 59873923 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59874161 | 59874271 | 59874161 | ID=MS.gene042961.t1.exon10;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59874161 | 59874271 | 59874161 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59874362 | 59874478 | 59874362 | ID=MS.gene042961.t1.exon11;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59874362 | 59874478 | 59874362 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59874606 | 59874695 | 59874606 | ID=MS.gene042961.t1.exon12;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59874606 | 59874695 | 59874606 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59875584 | 59875637 | 59875584 | ID=MS.gene042961.t1.exon13;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59875584 | 59875637 | 59875584 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59875918 | 59875992 | 59875918 | ID=MS.gene042961.t1.exon14;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59875918 | 59875992 | 59875918 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59876098 | 59876173 | 59876098 | ID=MS.gene042961.t1.exon15;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59876098 | 59876173 | 59876098 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59876281 | 59876380 | 59876281 | ID=MS.gene042961.t1.exon16;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59876281 | 59876380 | 59876281 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59877004 | 59877073 | 59877004 | ID=MS.gene042961.t1.exon17;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59877004 | 59877073 | 59877004 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59877739 | 59877812 | 59877739 | ID=MS.gene042961.t1.exon18;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59877739 | 59877812 | 59877739 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59879128 | 59879234 | 59879128 | ID=MS.gene042961.t1.exon19;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59879128 | 59879234 | 59879128 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59880250 | 59880504 | 59880250 | ID=MS.gene042961.t1.exon20;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59880250 | 59880504 | 59880250 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| chr6.4 | exon | 59880937 | 59881211 | 59880937 | ID=MS.gene042961.t1.exon21;Parent=MS.gene042961.t1 |
| chr6.4 | CDS | 59880937 | 59881211 | 59880937 | ID=cds.MS.gene042961.t1;Parent=MS.gene042961.t1 |
| Gene Sequence |
| Protein sequence |
