Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042968.t1 | XP_013453094.1 | 73.6 | 348 | 34 | 3 | 1 | 293 | 1 | 345 | 1.60E-119 | 439.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042968.t1 | Q9LV52 | 52.8 | 161 | 39 | 2 | 10 | 134 | 16 | 175 | 2.1e-35 | 151.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042968.t1 | A0A072UBW9 | 73.6 | 348 | 34 | 3 | 1 | 293 | 1 | 345 | 1.2e-119 | 439.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene042968.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042968.t1 | MTR_6g086805 | 71.552 | 348 | 41 | 5 | 1 | 293 | 1 | 345 | 3.41e-160 | 449 |
| MS.gene042968.t1 | MTR_1g102860 | 29.832 | 238 | 102 | 6 | 11 | 187 | 40 | 273 | 1.66e-25 | 103 |
| MS.gene042968.t1 | MTR_5g029680 | 31.276 | 243 | 92 | 7 | 3 | 176 | 24 | 260 | 3.78e-25 | 104 |
| MS.gene042968.t1 | MTR_3g104550 | 30.392 | 204 | 84 | 3 | 11 | 156 | 46 | 249 | 2.80e-23 | 98.6 |
| MS.gene042968.t1 | MTR_6g043060 | 33.493 | 209 | 80 | 6 | 9 | 158 | 20 | 228 | 1.62e-22 | 95.5 |
| MS.gene042968.t1 | MTR_1g061170 | 29.146 | 199 | 83 | 3 | 9 | 150 | 47 | 244 | 3.24e-22 | 96.3 |
| MS.gene042968.t1 | MTR_2g100680 | 31.280 | 211 | 85 | 5 | 10 | 160 | 30 | 240 | 8.80e-21 | 92.0 |
| MS.gene042968.t1 | MTR_4g077970 | 30.047 | 213 | 81 | 6 | 6 | 151 | 7 | 218 | 1.06e-20 | 92.0 |
| MS.gene042968.t1 | MTR_1g100777 | 56.522 | 69 | 30 | 0 | 2 | 70 | 9 | 77 | 1.79e-20 | 89.7 |
| MS.gene042968.t1 | MTR_8g083100 | 32.212 | 208 | 82 | 5 | 12 | 160 | 23 | 230 | 6.70e-20 | 89.7 |
| MS.gene042968.t1 | MTR_2g100670 | 57.377 | 61 | 26 | 0 | 10 | 70 | 32 | 92 | 7.67e-20 | 87.8 |
| MS.gene042968.t1 | MTR_2g100670 | 30.159 | 189 | 78 | 3 | 10 | 144 | 140 | 328 | 1.34e-19 | 88.6 |
| MS.gene042968.t1 | MTR_5g010680 | 54.545 | 66 | 30 | 0 | 5 | 70 | 18 | 83 | 1.41e-19 | 87.8 |
| MS.gene042968.t1 | MTR_7g095680 | 29.310 | 232 | 96 | 7 | 11 | 177 | 49 | 277 | 1.46e-19 | 87.8 |
| MS.gene042968.t1 | MTR_5g017470 | 55.882 | 68 | 30 | 0 | 3 | 70 | 1 | 68 | 1.98e-19 | 86.3 |
| MS.gene042968.t1 | MTR_5g089170 | 57.576 | 66 | 28 | 0 | 5 | 70 | 19 | 84 | 1.99e-19 | 85.9 |
| MS.gene042968.t1 | MTR_8g105780 | 31.313 | 198 | 69 | 4 | 9 | 140 | 20 | 216 | 3.77e-19 | 86.7 |
| MS.gene042968.t1 | MTR_8g087540 | 58.065 | 62 | 26 | 0 | 9 | 70 | 10 | 71 | 4.81e-19 | 86.7 |
| MS.gene042968.t1 | MTR_3g101870 | 58.730 | 63 | 26 | 0 | 8 | 70 | 21 | 83 | 5.54e-19 | 86.3 |
| MS.gene042968.t1 | MTR_7g091370 | 54.098 | 61 | 28 | 0 | 10 | 70 | 21 | 81 | 1.31e-18 | 83.2 |
| MS.gene042968.t1 | MTR_1g071360 | 28.502 | 207 | 96 | 3 | 11 | 165 | 32 | 238 | 2.37e-17 | 81.3 |
| MS.gene042968.t1 | MTR_2g017890 | 53.226 | 62 | 29 | 0 | 9 | 70 | 13 | 74 | 2.67e-17 | 81.6 |
| MS.gene042968.t1 | MTR_1g071360 | 28.502 | 207 | 96 | 3 | 11 | 165 | 29 | 235 | 3.20e-17 | 81.3 |
| MS.gene042968.t1 | MTR_0020s0020 | 51.515 | 66 | 32 | 0 | 5 | 70 | 27 | 92 | 3.98e-17 | 80.9 |
| MS.gene042968.t1 | MTR_4g045757 | 50.000 | 62 | 31 | 0 | 7 | 68 | 10 | 71 | 6.64e-15 | 68.9 |
| MS.gene042968.t1 | MTR_4g088900 | 49.231 | 65 | 29 | 1 | 10 | 70 | 32 | 96 | 1.94e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042968.t1 | AT3G24520 | 50.262 | 191 | 54 | 3 | 8 | 158 | 14 | 203 | 2.42e-52 | 174 |
| MS.gene042968.t1 | AT3G51910 | 31.707 | 205 | 90 | 4 | 7 | 162 | 25 | 228 | 1.62e-27 | 108 |
| MS.gene042968.t1 | AT3G63350 | 31.016 | 187 | 75 | 2 | 10 | 142 | 27 | 213 | 5.35e-26 | 104 |
| MS.gene042968.t1 | AT5G03720 | 31.111 | 225 | 85 | 5 | 5 | 160 | 49 | 272 | 3.12e-24 | 101 |
| MS.gene042968.t1 | AT5G03720 | 31.111 | 225 | 85 | 5 | 5 | 160 | 49 | 272 | 3.12e-24 | 101 |
| MS.gene042968.t1 | AT4G17750 | 63.235 | 68 | 25 | 0 | 3 | 70 | 44 | 111 | 1.50e-22 | 97.4 |
| MS.gene042968.t1 | AT1G46264 | 42.400 | 125 | 62 | 4 | 8 | 130 | 31 | 147 | 2.17e-21 | 92.8 |
| MS.gene042968.t1 | AT5G16820 | 30.986 | 213 | 78 | 6 | 7 | 151 | 23 | 234 | 2.55e-21 | 94.0 |
| MS.gene042968.t1 | AT5G16820 | 30.986 | 213 | 78 | 6 | 7 | 151 | 23 | 234 | 2.55e-21 | 94.0 |
| MS.gene042968.t1 | AT5G54070 | 26.776 | 183 | 85 | 2 | 8 | 141 | 68 | 250 | 2.88e-20 | 89.4 |
| MS.gene042968.t1 | AT1G32330 | 30.734 | 218 | 77 | 6 | 6 | 150 | 32 | 248 | 3.90e-20 | 90.5 |
| MS.gene042968.t1 | AT1G32330 | 30.734 | 218 | 77 | 6 | 6 | 150 | 32 | 248 | 4.21e-20 | 90.5 |
| MS.gene042968.t1 | AT3G22830 | 65.000 | 60 | 21 | 0 | 11 | 70 | 61 | 120 | 6.09e-20 | 89.4 |
| MS.gene042968.t1 | AT3G02990 | 33.493 | 209 | 72 | 7 | 9 | 151 | 21 | 228 | 7.66e-20 | 89.4 |
| MS.gene042968.t1 | AT4G11660 | 56.061 | 66 | 29 | 0 | 5 | 70 | 53 | 118 | 6.04e-19 | 86.3 |
| MS.gene042968.t1 | AT4G13980 | 61.017 | 59 | 23 | 0 | 12 | 70 | 24 | 82 | 1.37e-18 | 85.9 |
| MS.gene042968.t1 | AT1G67970 | 57.143 | 63 | 26 | 1 | 9 | 70 | 17 | 79 | 1.86e-18 | 84.7 |
| MS.gene042968.t1 | AT2G26150 | 58.333 | 60 | 25 | 0 | 11 | 70 | 44 | 103 | 1.87e-18 | 84.7 |
| MS.gene042968.t1 | AT2G26150 | 58.333 | 60 | 25 | 0 | 11 | 70 | 44 | 103 | 1.87e-18 | 84.7 |
| MS.gene042968.t1 | AT4G36990 | 51.515 | 66 | 32 | 0 | 5 | 70 | 8 | 73 | 1.89e-18 | 83.6 |
| MS.gene042968.t1 | AT5G43840 | 30.178 | 169 | 74 | 2 | 10 | 134 | 18 | 186 | 3.62e-18 | 82.8 |
| MS.gene042968.t1 | AT2G41690 | 56.667 | 60 | 26 | 0 | 11 | 70 | 40 | 99 | 3.64e-17 | 79.3 |
| MS.gene042968.t1 | AT5G62020 | 51.515 | 66 | 32 | 0 | 5 | 70 | 17 | 82 | 6.60e-17 | 79.7 |
| MS.gene042968.t1 | AT5G45710 | 28.125 | 288 | 131 | 9 | 3 | 220 | 1 | 282 | 4.72e-16 | 77.8 |
| MS.gene042968.t1 | AT5G45710 | 28.125 | 288 | 131 | 9 | 3 | 220 | 1 | 282 | 4.72e-16 | 77.8 |
| MS.gene042968.t1 | AT4G18880 | 27.675 | 271 | 121 | 6 | 3 | 201 | 1 | 268 | 1.58e-14 | 73.6 |
Find 78 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAGTGATAGTAGTAAAA+AGG | 0.204760 | 6.4:+60100931 | MS.gene042968:CDS |
| AAGAGAGTGAGAGAATTCTA+AGG | 0.267094 | 6.4:-60099788 | None:intergenic |
| TGGCTCCGGTGGGTGGTTGG+TGG | 0.288941 | 6.4:+60100807 | MS.gene042968:CDS |
| GCTCCGGTGGGTGGTTGGTG+GGG | 0.299967 | 6.4:+60100809 | MS.gene042968:CDS |
| CCACCTTCTAACAACGAAAA+AGG | 0.302300 | 6.4:-60101010 | None:intergenic |
| TTGATAAGGTTATCTGTGTT+TGG | 0.326130 | 6.4:-60099727 | None:intergenic |
| AGTTTGGACAGATGGGTTAT+AGG | 0.339452 | 6.4:+60100840 | MS.gene042968:CDS |
| CTCCGGTGGGTGGTTGGTGG+GGG | 0.345456 | 6.4:+60100810 | MS.gene042968:CDS |
| GGGCATGGCGGTGGCAAATT+CGG | 0.364204 | 6.4:+60100673 | MS.gene042968:CDS |
| GCCGGTGTTGTCTCCGACGC+CGG | 0.401712 | 6.4:+60100886 | MS.gene042968:CDS |
| ACGATGAAACTGTTGTTAGA+TGG | 0.404226 | 6.4:-60099757 | None:intergenic |
| GGCTCCGGTGGGTGGTTGGT+GGG | 0.407249 | 6.4:+60100808 | MS.gene042968:CDS |
| CGACGCCGGCGCCGATGATG+TGG | 0.444325 | 6.4:+60100900 | MS.gene042968:CDS |
| TTCGGTGAAGATGGAGTTTG+AGG | 0.446034 | 6.4:+60100691 | MS.gene042968:CDS |
| AGTATTCTAGACAAAATTTG+AGG | 0.453954 | 6.4:-60100539 | None:intergenic |
| TGTCGGAAATTTCAATGAAA+TGG | 0.454809 | 6.4:+60100958 | MS.gene042968:CDS |
| GTCAACTTCCTCGGAGTCAT+CGG | 0.460070 | 6.4:+60100652 | MS.gene042968:CDS |
| TAGATGGGCCCCACTTGATA+AGG | 0.462941 | 6.4:-60099741 | None:intergenic |
| CCACCTCCTGCGGTGGTGCA+CGG | 0.463396 | 6.4:-60100787 | None:intergenic |
| CTTGTGTTCTTAAATGGGAA+TGG | 0.469203 | 6.4:+60099648 | None:intergenic |
| ATGTCGTCGTCGCCGGAGCT+TGG | 0.470572 | 6.4:+60100743 | MS.gene042968:CDS |
| TTTAGAAGAAGATGAAGCTA+TGG | 0.473347 | 6.4:+60100382 | MS.gene042968:CDS |
| TTGTTGTGTTTGAAGAAAAG+AGG | 0.474502 | 6.4:-60099814 | None:intergenic |
| GGAGTCATCGGGCATGGCGG+TGG | 0.474769 | 6.4:+60100664 | MS.gene042968:CDS |
| CAGGAGGTGGCTCCGGTGGG+TGG | 0.478583 | 6.4:+60100800 | MS.gene042968:CDS |
| ACCGCAGGAGGTGGCTCCGG+TGG | 0.478779 | 6.4:+60100796 | MS.gene042968:CDS |
| GACGCCGGCGCCGATGATGT+GGG | 0.479475 | 6.4:+60100901 | MS.gene042968:CDS |
| GTTGATATCTCCGGTGGCTA+AGG | 0.482556 | 6.4:+60100607 | MS.gene042968:CDS |
| GGTGGCTAAGGCGGCCGTGA+CGG | 0.483148 | 6.4:+60100619 | MS.gene042968:CDS |
| CCGTGCACCACCGCAGGAGG+TGG | 0.485061 | 6.4:+60100787 | MS.gene042968:CDS |
| ACCACCGCAGGAGGTGGCTC+CGG | 0.485869 | 6.4:+60100793 | MS.gene042968:CDS |
| AGGTGGCTCCGGTGGGTGGT+TGG | 0.489246 | 6.4:+60100804 | MS.gene042968:CDS |
| AATTTAGAAGAAGAGCTTCA+AGG | 0.492990 | 6.4:+60100440 | MS.gene042968:CDS |
| TAACATGATGTCGTCGTCGC+CGG | 0.497684 | 6.4:+60100736 | MS.gene042968:CDS |
| GCAGATGGAGTTTGGACAGA+TGG | 0.497763 | 6.4:+60100832 | MS.gene042968:CDS |
| CCGCAGGAGGTGGCTCCGGT+GGG | 0.505617 | 6.4:+60100797 | MS.gene042968:CDS |
| TCAACTTCCTCGGAGTCATC+GGG | 0.508311 | 6.4:+60100653 | MS.gene042968:CDS |
| CGATGAAACTGTTGTTAGAT+GGG | 0.511534 | 6.4:-60099756 | None:intergenic |
| TGACGTCGTTGCCGCCGTCA+CGG | 0.512284 | 6.4:-60100633 | None:intergenic |
| AGAAGATGAAGCTATGGTGA+TGG | 0.518088 | 6.4:+60100388 | MS.gene042968:CDS |
| GGCAACGACGTCAACTTCCT+CGG | 0.518118 | 6.4:+60100643 | MS.gene042968:CDS |
| CAGATGGAGTTTGGACAGAT+GGG | 0.518140 | 6.4:+60100833 | MS.gene042968:CDS |
| GAAAAGACCACAACAAATGA+TGG | 0.518696 | 6.4:+60100490 | MS.gene042968:CDS |
| GGCTAAGGCGGCCGTGACGG+CGG | 0.526324 | 6.4:+60100622 | MS.gene042968:CDS |
| GAGGAAGATGAGGTAACGGT+TGG | 0.526402 | 6.4:+60100710 | MS.gene042968:CDS |
| GATGGAGTTTGAGGAAGATG+AGG | 0.529799 | 6.4:+60100700 | MS.gene042968:CDS |
| ACCGGAGCCACCTCCTGCGG+TGG | 0.537226 | 6.4:-60100794 | None:intergenic |
| TTCCTCGGAGTCATCGGGCA+TGG | 0.539288 | 6.4:+60100658 | MS.gene042968:CDS |
| GAAACGACGGTTGATATCTC+CGG | 0.543586 | 6.4:+60100598 | MS.gene042968:CDS |
| CACATCATCGGCGCCGGCGT+CGG | 0.545448 | 6.4:-60100899 | None:intergenic |
| GGTGGCAAATTCGGTGAAGA+TGG | 0.545610 | 6.4:+60100682 | MS.gene042968:CDS |
| GTCACGGCCGCCTTAGCCAC+CGG | 0.545636 | 6.4:-60100617 | None:intergenic |
| TCAATTTCAAAACCAAGCTC+CGG | 0.549174 | 6.4:-60100755 | None:intergenic |
| TCACCCCACATCATCGGCGC+CGG | 0.566971 | 6.4:-60100905 | None:intergenic |
| GATATCTCCGGTGGCTAAGG+CGG | 0.568045 | 6.4:+60100610 | MS.gene042968:CDS |
| TTGTGAAGTTCCACGGATGC+CGG | 0.574030 | 6.4:+60100868 | MS.gene042968:CDS |
| CTATTCTCACCCCACATCAT+CGG | 0.575525 | 6.4:-60100911 | None:intergenic |
| TTTGCACCGTGCACCACCGC+AGG | 0.578267 | 6.4:+60100781 | MS.gene042968:CDS |
| AGAGAGTGAGAGAATTCTAA+GGG | 0.578397 | 6.4:-60099787 | None:intergenic |
| GGAGACAACACCGGCATCCG+TGG | 0.579394 | 6.4:-60100878 | None:intergenic |
| GCACCGTGCACCACCGCAGG+AGG | 0.584699 | 6.4:+60100784 | MS.gene042968:CDS |
| GGCGTGATTGTGAAGTTCCA+CGG | 0.595018 | 6.4:+60100861 | MS.gene042968:CDS |
| CCCACCGGAGCCACCTCCTG+CGG | 0.595130 | 6.4:-60100797 | None:intergenic |
| GTTTGAGGAAGATGAGGTAA+CGG | 0.595921 | 6.4:+60100706 | MS.gene042968:CDS |
| ACACAGATAACCTTATCAAG+TGG | 0.597268 | 6.4:+60099731 | MS.gene042968:CDS |
| CACAGATAACCTTATCAAGT+GGG | 0.597725 | 6.4:+60099732 | MS.gene042968:CDS |
| ACGCCGGCGCCGATGATGTG+GGG | 0.609629 | 6.4:+60100902 | MS.gene042968:CDS |
| CGCCATGCCCGATGACTCCG+AGG | 0.624450 | 6.4:-60100660 | None:intergenic |
| AAATTTCAATGAAATGGCGG+CGG | 0.625567 | 6.4:+60100964 | MS.gene042968:CDS |
| CATTATGAAGACATACCACA+TGG | 0.631169 | 6.4:+60099696 | MS.gene042968:CDS |
| TGTTTGGTTCATTAACCATG+TGG | 0.639928 | 6.4:-60099711 | None:intergenic |
| CGGAAATTTCAATGAAATGG+CGG | 0.648772 | 6.4:+60100961 | MS.gene042968:CDS |
| GCCGGCGTCGGAGACAACAC+CGG | 0.674432 | 6.4:-60100887 | None:intergenic |
| ACGACGGTTGATATCTCCGG+TGG | 0.680566 | 6.4:+60100601 | MS.gene042968:CDS |
| CTCGGAGTCATCGGGCATGG+CGG | 0.681310 | 6.4:+60100661 | MS.gene042968:CDS |
| TGGTATGTCTTCATAATGAA+CGG | 0.681423 | 6.4:-60099691 | None:intergenic |
| TTGTTGATAACAAGAAACGA+CGG | 0.686402 | 6.4:+60100585 | MS.gene042968:CDS |
| ACAGATAACCTTATCAAGTG+GGG | 0.700643 | 6.4:+60099733 | MS.gene042968:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATAATAATTATTTTAATG+AGG | + | chr6.4:60100346-60100365 | MS.gene042968:intron | 10.0% |
| !!! | TTATTGATATTTTTATTTCT+CGG | + | chr6.4:60099935-60099954 | MS.gene042968:intron | 10.0% |
| !!! | AAAAAATTGATAATTGGATT+AGG | - | chr6.4:60099882-60099901 | None:intergenic | 15.0% |
| !!! | TGTACTAAAAAATTGATAAT+TGG | - | chr6.4:60099888-60099907 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTGTTTTTGTTTA+GGG | + | chr6.4:60100173-60100192 | MS.gene042968:intron | 15.0% |
| !!! | TTTTGTTTTTGTTTTTGTTT+AGG | + | chr6.4:60100166-60100185 | MS.gene042968:intron | 15.0% |
| !!! | AGTAATATTTTTGTCTGAAT+TGG | + | chr6.4:60100064-60100083 | MS.gene042968:intron | 20.0% |
| !!! | GTAATATTTTTGTCTGAATT+GGG | + | chr6.4:60100065-60100084 | MS.gene042968:intron | 20.0% |
| ! | AGAAGTGATAGTAGTAAAAA+GGG | + | chr6.4:60100932-60100951 | MS.gene042968:CDS | 25.0% |
| ! | AGTATTCTAGACAAAATTTG+AGG | - | chr6.4:60100542-60100561 | None:intergenic | 25.0% |
| ! | TAGAAGTGATAGTAGTAAAA+AGG | + | chr6.4:60100931-60100950 | MS.gene042968:CDS | 25.0% |
| !! | AATTTTTGTGCAAACCAAAT+CGG | - | chr6.4:60100005-60100024 | None:intergenic | 25.0% |
| !! | ATTTGTTGAAGAACATAGTT+AGG | + | chr6.4:60100261-60100280 | MS.gene042968:intron | 25.0% |
| !!! | AAAAAAGTGAGTTTTTGAAG+TGG | - | chr6.4:60099914-60099933 | None:intergenic | 25.0% |
| !!! | AAAAAGTGAGTTTTTGAAGT+GGG | - | chr6.4:60099913-60099932 | None:intergenic | 25.0% |
| AAGTGATAGTAGTAAAAAGG+GGG | + | chr6.4:60100934-60100953 | MS.gene042968:CDS | 30.0% | |
| AATTTAGAAGAAGAGCTTCA+AGG | + | chr6.4:60100440-60100459 | MS.gene042968:CDS | 30.0% | |
| ATAGTTAGGAAGAAACATGT+TGG | + | chr6.4:60100275-60100294 | MS.gene042968:intron | 30.0% | |
| GAAGTGATAGTAGTAAAAAG+GGG | + | chr6.4:60100933-60100952 | MS.gene042968:CDS | 30.0% | |
| TCTAACAACGAAAAAGGATA+AGG | - | chr6.4:60101007-60101026 | None:intergenic | 30.0% | |
| TGGTATGTCTTCATAATGAA+CGG | - | chr6.4:60099694-60099713 | None:intergenic | 30.0% | |
| TGTCGGAAATTTCAATGAAA+TGG | + | chr6.4:60100958-60100977 | MS.gene042968:CDS | 30.0% | |
| TTGATAAGGTTATCTGTGTT+TGG | - | chr6.4:60099730-60099749 | None:intergenic | 30.0% | |
| TTGTTGTGTTTGAAGAAAAG+AGG | - | chr6.4:60099817-60099836 | None:intergenic | 30.0% | |
| TTTAGAAGAAGATGAAGCTA+TGG | + | chr6.4:60100382-60100401 | MS.gene042968:CDS | 30.0% | |
| ! | AAAAAAGCCATCATTTGTTG+TGG | - | chr6.4:60100500-60100519 | None:intergenic | 30.0% |
| !! | AAATTGTGACGGACTAAATT+AGG | - | chr6.4:60099980-60099999 | None:intergenic | 30.0% |
| !! | TATCCTTTTTCGTTGTTAGA+AGG | + | chr6.4:60101007-60101026 | MS.gene042968:CDS | 30.0% |
| !! | TTGTTGATAACAAGAAACGA+CGG | + | chr6.4:60100585-60100604 | MS.gene042968:CDS | 30.0% |
| AAATTTCAATGAAATGGCGG+CGG | + | chr6.4:60100964-60100983 | MS.gene042968:CDS | 35.0% | |
| AACAACGAAAAAGGATAAGG+TGG | - | chr6.4:60101004-60101023 | None:intergenic | 35.0% | |
| AAGAGAGTGAGAGAATTCTA+AGG | - | chr6.4:60099791-60099810 | None:intergenic | 35.0% | |
| ACACAGATAACCTTATCAAG+TGG | + | chr6.4:60099731-60099750 | MS.gene042968:CDS | 35.0% | |
| ACAGATAACCTTATCAAGTG+GGG | + | chr6.4:60099733-60099752 | MS.gene042968:CDS | 35.0% | |
| ACGATGAAACTGTTGTTAGA+TGG | - | chr6.4:60099760-60099779 | None:intergenic | 35.0% | |
| AGAGAGTGAGAGAATTCTAA+GGG | - | chr6.4:60099790-60099809 | None:intergenic | 35.0% | |
| AGTGATAGTAGTAAAAAGGG+GGG | + | chr6.4:60100935-60100954 | MS.gene042968:CDS | 35.0% | |
| CACAGATAACCTTATCAAGT+GGG | + | chr6.4:60099732-60099751 | MS.gene042968:CDS | 35.0% | |
| CATTATGAAGACATACCACA+TGG | + | chr6.4:60099696-60099715 | MS.gene042968:CDS | 35.0% | |
| CCAAATCGGAAAAATTGTGA+CGG | - | chr6.4:60099991-60100010 | None:intergenic | 35.0% | |
| CGATGAAACTGTTGTTAGAT+GGG | - | chr6.4:60099759-60099778 | None:intergenic | 35.0% | |
| CGGAAATTTCAATGAAATGG+CGG | + | chr6.4:60100961-60100980 | MS.gene042968:CDS | 35.0% | |
| GAAAAGACCACAACAAATGA+TGG | + | chr6.4:60100490-60100509 | MS.gene042968:CDS | 35.0% | |
| TCAATTTCAAAACCAAGCTC+CGG | - | chr6.4:60100758-60100777 | None:intergenic | 35.0% | |
| ! | TGTTTAGGGTTTCAGAAAAG+TGG | + | chr6.4:60100187-60100206 | MS.gene042968:intron | 35.0% |
| ! | TGTTTGGTTCATTAACCATG+TGG | - | chr6.4:60099714-60099733 | None:intergenic | 35.0% |
| !! | AAGAAACATGTTGGTGGTAT+TGG | + | chr6.4:60100284-60100303 | MS.gene042968:intron | 35.0% |
| !! | GCGAATGAATGGTTTTTAAG+AGG | + | chr6.4:60100230-60100249 | MS.gene042968:intron | 35.0% |
| AAAAGTGGATCCGGATAGAT+GGG | + | chr6.4:60100202-60100221 | MS.gene042968:intron | 40.0% | |
| AGAAGATGAAGCTATGGTGA+TGG | + | chr6.4:60100388-60100407 | MS.gene042968:CDS | 40.0% | |
| CCACCTTCTAACAACGAAAA+AGG | - | chr6.4:60101013-60101032 | None:intergenic | 40.0% | |
| GATGGGAATTTGCGAATGAA+TGG | + | chr6.4:60100219-60100238 | MS.gene042968:intron | 40.0% | |
| GTTAGGAAGAAACATGTTGG+TGG | + | chr6.4:60100278-60100297 | MS.gene042968:intron | 40.0% | |
| GTTTGAGGAAGATGAGGTAA+CGG | + | chr6.4:60100706-60100725 | MS.gene042968:CDS | 40.0% | |
| TTCGCAAATTCCCATCTATC+CGG | - | chr6.4:60100215-60100234 | None:intergenic | 40.0% | |
| ! | CCGTCACAATTTTTCCGATT+TGG | + | chr6.4:60099988-60100007 | MS.gene042968:intron | 40.0% |
| ! | TTGGTGGTATTGGAAATGGA+AGG | + | chr6.4:60100294-60100313 | MS.gene042968:intron | 40.0% |
| !! | AGTTTGGACAGATGGGTTAT+AGG | + | chr6.4:60100840-60100859 | MS.gene042968:CDS | 40.0% |
| !! | CATGTTGGTGGTATTGGAAA+TGG | + | chr6.4:60100290-60100309 | MS.gene042968:intron | 40.0% |
| !! | CCTTTTTCGTTGTTAGAAGG+TGG | + | chr6.4:60101010-60101029 | MS.gene042968:CDS | 40.0% |
| CAGATGGAGTTTGGACAGAT+GGG | + | chr6.4:60100833-60100852 | MS.gene042968:CDS | 45.0% | |
| CTATTCTCACCCCACATCAT+CGG | - | chr6.4:60100914-60100933 | None:intergenic | 45.0% | |
| GAAAAGTGGATCCGGATAGA+TGG | + | chr6.4:60100201-60100220 | MS.gene042968:intron | 45.0% | |
| GATGGAGTTTGAGGAAGATG+AGG | + | chr6.4:60100700-60100719 | MS.gene042968:CDS | 45.0% | |
| GGGTTTCAGAAAAGTGGATC+CGG | + | chr6.4:60100193-60100212 | MS.gene042968:intron | 45.0% | |
| TTCGGTGAAGATGGAGTTTG+AGG | + | chr6.4:60100691-60100710 | MS.gene042968:CDS | 45.0% | |
| ! | AGTAGTAAAAAGGGGGGTGT+CGG | + | chr6.4:60100941-60100960 | MS.gene042968:CDS | 45.0% |
| ! | GAAACGACGGTTGATATCTC+CGG | + | chr6.4:60100598-60100617 | MS.gene042968:CDS | 45.0% |
| GCAGATGGAGTTTGGACAGA+TGG | + | chr6.4:60100832-60100851 | MS.gene042968:CDS | 50.0% | |
| GGCGTGATTGTGAAGTTCCA+CGG | + | chr6.4:60100861-60100880 | MS.gene042968:CDS | 50.0% | |
| GGGTAGCGAGAAAATTGCGA+GGG | + | chr6.4:60100085-60100104 | MS.gene042968:intron | 50.0% | |
| GTCAACTTCCTCGGAGTCAT+CGG | + | chr6.4:60100652-60100671 | MS.gene042968:CDS | 50.0% | |
| GTTGATATCTCCGGTGGCTA+AGG | + | chr6.4:60100607-60100626 | MS.gene042968:CDS | 50.0% | |
| TAACATGATGTCGTCGTCGC+CGG | + | chr6.4:60100736-60100755 | MS.gene042968:CDS | 50.0% | |
| TAGATGGGCCCCACTTGATA+AGG | - | chr6.4:60099744-60099763 | None:intergenic | 50.0% | |
| TCAACTTCCTCGGAGTCATC+GGG | + | chr6.4:60100653-60100672 | MS.gene042968:CDS | 50.0% | |
| TGGGTAGCGAGAAAATTGCG+AGG | + | chr6.4:60100084-60100103 | MS.gene042968:intron | 50.0% | |
| TTGTGAAGTTCCACGGATGC+CGG | + | chr6.4:60100868-60100887 | MS.gene042968:CDS | 50.0% | |
| ! | GAGGAAGATGAGGTAACGGT+TGG | + | chr6.4:60100710-60100729 | MS.gene042968:CDS | 50.0% |
| ! | GGTGGCAAATTCGGTGAAGA+TGG | + | chr6.4:60100682-60100701 | MS.gene042968:CDS | 50.0% |
| GATATCTCCGGTGGCTAAGG+CGG | + | chr6.4:60100610-60100629 | MS.gene042968:CDS | 55.0% | |
| GGCAACGACGTCAACTTCCT+CGG | + | chr6.4:60100643-60100662 | MS.gene042968:CDS | 55.0% | |
| ! | ACGACGGTTGATATCTCCGG+TGG | + | chr6.4:60100601-60100620 | MS.gene042968:CDS | 55.0% |
| GGGCATGGCGGTGGCAAATT+CGG | + | chr6.4:60100673-60100692 | MS.gene042968:CDS | 60.0% | |
| TGGTGGGGGCAGATGGAGTT+TGG | + | chr6.4:60100824-60100843 | MS.gene042968:CDS | 60.0% | |
| TTCCTCGGAGTCATCGGGCA+TGG | + | chr6.4:60100658-60100677 | MS.gene042968:CDS | 60.0% | |
| ATGTCGTCGTCGCCGGAGCT+TGG | + | chr6.4:60100743-60100762 | MS.gene042968:CDS | 65.0% | |
| CTCGGAGTCATCGGGCATGG+CGG | + | chr6.4:60100661-60100680 | MS.gene042968:CDS | 65.0% | |
| GGAGACAACACCGGCATCCG+TGG | - | chr6.4:60100881-60100900 | None:intergenic | 65.0% | |
| TCACCCCACATCATCGGCGC+CGG | - | chr6.4:60100908-60100927 | None:intergenic | 65.0% | |
| TGACGTCGTTGCCGCCGTCA+CGG | - | chr6.4:60100636-60100655 | None:intergenic | 65.0% | |
| TTTGCACCGTGCACCACCGC+AGG | + | chr6.4:60100781-60100800 | MS.gene042968:CDS | 65.0% | |
| ACCACCGCAGGAGGTGGCTC+CGG | + | chr6.4:60100793-60100812 | MS.gene042968:CDS | 70.0% | |
| AGGTGGCTCCGGTGGGTGGT+TGG | + | chr6.4:60100804-60100823 | MS.gene042968:CDS | 70.0% | |
| CCACCTCCTGCGGTGGTGCA+CGG | - | chr6.4:60100790-60100809 | None:intergenic | 70.0% | |
| CGCCATGCCCGATGACTCCG+AGG | - | chr6.4:60100663-60100682 | None:intergenic | 70.0% | |
| GGAGTCATCGGGCATGGCGG+TGG | + | chr6.4:60100664-60100683 | MS.gene042968:CDS | 70.0% | |
| GGCTCCGGTGGGTGGTTGGT+GGG | + | chr6.4:60100808-60100827 | MS.gene042968:CDS | 70.0% | |
| GGTGGCTAAGGCGGCCGTGA+CGG | + | chr6.4:60100619-60100638 | MS.gene042968:CDS | 70.0% | |
| GTCACGGCCGCCTTAGCCAC+CGG | - | chr6.4:60100620-60100639 | None:intergenic | 70.0% | |
| TGCCCCCACCAACCACCCAC+CGG | - | chr6.4:60100815-60100834 | None:intergenic | 70.0% | |
| TGGCTCCGGTGGGTGGTTGG+TGG | + | chr6.4:60100807-60100826 | MS.gene042968:CDS | 70.0% | |
| ! | GCCGGCGTCGGAGACAACAC+CGG | - | chr6.4:60100890-60100909 | None:intergenic | 70.0% |
| ! | GCTCCGGTGGGTGGTTGGTG+GGG | + | chr6.4:60100809-60100828 | MS.gene042968:CDS | 70.0% |
| !! | ACGCCGGCGCCGATGATGTG+GGG | + | chr6.4:60100902-60100921 | MS.gene042968:CDS | 70.0% |
| !! | CACATCATCGGCGCCGGCGT+CGG | - | chr6.4:60100902-60100921 | None:intergenic | 70.0% |
| !! | CTCCGGTGGGTGGTTGGTGG+GGG | + | chr6.4:60100810-60100829 | MS.gene042968:CDS | 70.0% |
| !! | GACGCCGGCGCCGATGATGT+GGG | + | chr6.4:60100901-60100920 | MS.gene042968:CDS | 70.0% |
| !! | GCCGGTGTTGTCTCCGACGC+CGG | + | chr6.4:60100886-60100905 | MS.gene042968:CDS | 70.0% |
| !! | GGGTGGTTGGTGGGGGCAGA+TGG | + | chr6.4:60100817-60100836 | MS.gene042968:CDS | 70.0% |
| ACCGCAGGAGGTGGCTCCGG+TGG | + | chr6.4:60100796-60100815 | MS.gene042968:CDS | 75.0% | |
| ACCGGAGCCACCTCCTGCGG+TGG | - | chr6.4:60100797-60100816 | None:intergenic | 75.0% | |
| CAGGAGGTGGCTCCGGTGGG+TGG | + | chr6.4:60100800-60100819 | MS.gene042968:CDS | 75.0% | |
| CCCACCGGAGCCACCTCCTG+CGG | - | chr6.4:60100800-60100819 | None:intergenic | 75.0% | |
| CCGCAGGAGGTGGCTCCGGT+GGG | + | chr6.4:60100797-60100816 | MS.gene042968:CDS | 75.0% | |
| CCGTGCACCACCGCAGGAGG+TGG | + | chr6.4:60100787-60100806 | MS.gene042968:CDS | 75.0% | |
| GCACCGTGCACCACCGCAGG+AGG | + | chr6.4:60100784-60100803 | MS.gene042968:CDS | 75.0% | |
| GGCTAAGGCGGCCGTGACGG+CGG | + | chr6.4:60100622-60100641 | MS.gene042968:CDS | 75.0% | |
| !! | CGACGCCGGCGCCGATGATG+TGG | + | chr6.4:60100900-60100919 | MS.gene042968:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 60099661 | 60101039 | 60099661 | ID=MS.gene042968 |
| chr6.4 | mRNA | 60099661 | 60101039 | 60099661 | ID=MS.gene042968.t1;Parent=MS.gene042968 |
| chr6.4 | exon | 60099661 | 60099870 | 60099661 | ID=MS.gene042968.t1.exon1;Parent=MS.gene042968.t1 |
| chr6.4 | CDS | 60099661 | 60099870 | 60099661 | ID=cds.MS.gene042968.t1;Parent=MS.gene042968.t1 |
| chr6.4 | exon | 60100368 | 60101039 | 60100368 | ID=MS.gene042968.t1.exon2;Parent=MS.gene042968.t1 |
| chr6.4 | CDS | 60100368 | 60101039 | 60100368 | ID=cds.MS.gene042968.t1;Parent=MS.gene042968.t1 |
| Gene Sequence |
| Protein sequence |
