AlfalfaGEDB | MS.gene042968

M. sativa cultivar XinJiangDaYe / MS.gene042968

KEGG: K09419
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042968.t1	XP_013453094.1	73.6	348	34	3	1	293	1	345	1.60E-119	439.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042968.t1	Q9LV52	52.8	161	39	2	10	134	16	175	2.1e-35	151.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042968.t1	A0A072UBW9	73.6	348	34	3	1	293	1	345	1.2e-119	439.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene042968.t1	TF	HSF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042968.t1	MTR_6g086805	71.552	348	41	5	1	293	1	345	3.41e-160	449
MS.gene042968.t1	MTR_1g102860	29.832	238	102	6	11	187	40	273	1.66e-25	103
MS.gene042968.t1	MTR_5g029680	31.276	243	92	7	3	176	24	260	3.78e-25	104
MS.gene042968.t1	MTR_3g104550	30.392	204	84	3	11	156	46	249	2.80e-23	98.6
MS.gene042968.t1	MTR_6g043060	33.493	209	80	6	9	158	20	228	1.62e-22	95.5
MS.gene042968.t1	MTR_1g061170	29.146	199	83	3	9	150	47	244	3.24e-22	96.3
MS.gene042968.t1	MTR_2g100680	31.280	211	85	5	10	160	30	240	8.80e-21	92.0
MS.gene042968.t1	MTR_4g077970	30.047	213	81	6	6	151	7	218	1.06e-20	92.0
MS.gene042968.t1	MTR_1g100777	56.522	69	30	0	2	70	9	77	1.79e-20	89.7
MS.gene042968.t1	MTR_8g083100	32.212	208	82	5	12	160	23	230	6.70e-20	89.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042968.t1	AT3G24520	50.262	191	54	3	8	158	14	203	2.42e-52	174
MS.gene042968.t1	AT3G51910	31.707	205	90	4	7	162	25	228	1.62e-27	108
MS.gene042968.t1	AT3G63350	31.016	187	75	2	10	142	27	213	5.35e-26	104
MS.gene042968.t1	AT5G03720	31.111	225	85	5	5	160	49	272	3.12e-24	101
MS.gene042968.t1	AT5G03720	31.111	225	85	5	5	160	49	272	3.12e-24	101
MS.gene042968.t1	AT4G17750	63.235	68	25	0	3	70	44	111	1.50e-22	97.4
MS.gene042968.t1	AT1G46264	42.400	125	62	4	8	130	31	147	2.17e-21	92.8
MS.gene042968.t1	AT5G16820	30.986	213	78	6	7	151	23	234	2.55e-21	94.0
MS.gene042968.t1	AT5G16820	30.986	213	78	6	7	151	23	234	2.55e-21	94.0
MS.gene042968.t1	AT5G54070	26.776	183	85	2	8	141	68	250	2.88e-20	89.4

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Find 78 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTCAATGAAATGGCGG+CGG	0.625567	6.4:+60100964	MS.gene042968:CDS
AAGAGAGTGAGAGAATTCTA+AGG	0.267094	6.4:-60099788	None:intergenic
AATTTAGAAGAAGAGCTTCA+AGG	0.492990	6.4:+60100440	MS.gene042968:CDS
ACACAGATAACCTTATCAAG+TGG	0.597268	6.4:+60099731	MS.gene042968:CDS
ACAGATAACCTTATCAAGTG+GGG	0.700643	6.4:+60099733	MS.gene042968:CDS
ACCACCGCAGGAGGTGGCTC+CGG	0.485869	6.4:+60100793	MS.gene042968:CDS
ACCGCAGGAGGTGGCTCCGG+TGG	0.478779	6.4:+60100796	MS.gene042968:CDS
ACCGGAGCCACCTCCTGCGG+TGG	0.537226	6.4:-60100794	None:intergenic
ACGACGGTTGATATCTCCGG+TGG	0.680566	6.4:+60100601	MS.gene042968:CDS
ACGATGAAACTGTTGTTAGA+TGG	0.404226	6.4:-60099757	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGATAGTAGTAAAAAGG+GGG	+	chr6.4:60100934-60100953	MS.gene042968:CDS	30.0%
AATTTAGAAGAAGAGCTTCA+AGG	+	chr6.4:60100440-60100459	MS.gene042968:CDS	30.0%
ATAGTTAGGAAGAAACATGT+TGG	+	chr6.4:60100275-60100294	MS.gene042968:intron	30.0%
GAAGTGATAGTAGTAAAAAG+GGG	+	chr6.4:60100933-60100952	MS.gene042968:CDS	30.0%
TCTAACAACGAAAAAGGATA+AGG	-	chr6.4:60101007-60101026	None:intergenic	30.0%
TGGTATGTCTTCATAATGAA+CGG	-	chr6.4:60099694-60099713	None:intergenic	30.0%
TGTCGGAAATTTCAATGAAA+TGG	+	chr6.4:60100958-60100977	MS.gene042968:CDS	30.0%
TTGATAAGGTTATCTGTGTT+TGG	-	chr6.4:60099730-60099749	None:intergenic	30.0%
TTGTTGTGTTTGAAGAAAAG+AGG	-	chr6.4:60099817-60099836	None:intergenic	30.0%
TTTAGAAGAAGATGAAGCTA+TGG	+	chr6.4:60100382-60100401	MS.gene042968:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	60099661	60101039	60099661	ID=MS.gene042968
chr6.4	mRNA	60099661	60101039	60099661	ID=MS.gene042968.t1;Parent=MS.gene042968
chr6.4	exon	60099661	60099870	60099661	ID=MS.gene042968.t1.exon1;Parent=MS.gene042968.t1
chr6.4	CDS	60099661	60099870	60099661	ID=cds.MS.gene042968.t1;Parent=MS.gene042968.t1
chr6.4	exon	60100368	60101039	60100368	ID=MS.gene042968.t1.exon2;Parent=MS.gene042968.t1
chr6.4	CDS	60100368	60101039	60100368	ID=cds.MS.gene042968.t1;Parent=MS.gene042968.t1

Gene Sequence

>MS.gene042968

ATGGGAATGGAGCAAAACAACGTGATTGCACCGTTCATTATGAAGACATACCACATGGTTAATGAACCAAACACAGATAACCTTATCAAGTGGGGCCCATCTAACAACAGTTTCATCGTTCTTGATCCCTTAGAATTCTCTCACTCTCTTCTTCCTCTTTTCTTCAAACACAACAATTTCTCAAGCTTTGTTCGTCAACTCAACACTTATGTAAGTAACCTAATCCAATTATCAATTTTTTAGTACAAACCCACTTCAAAAACTCACTTTTTTATTATTGATATTTTTATTTCTCGGTAATTCGATCAAATGAAGACCTAATTTAGTCCGTCACAATTTTTCCGATTTGGTTTGCACAAAAATTATACTTCTAATTAGTCTTTGATATTTTCATGACTAATTTAGTAATATTTTTGTCTGAATTGGGTAGCGAGAAAATTGCGAGGGTTAAATTGAGTTTTTAATTTTTAATCAAATTCAAATTTTGATTATTAAAATTTTTGTGTTTTGTTTTTGTTTTTGTTTTTGTTTAGGGTTTCAGAAAAGTGGATCCGGATAGATGGGAATTTGCGAATGAATGGTTTTTAAGAGGACAAAAACATTTGTTGAAGAACATAGTTAGGAAGAAACATGTTGGTGGTATTGGAAATGGAAGGAATAATAATAATAATAATAATTATTATAACAATAATAATTATTTTAATGAGGTGAAGTTTGAAGATTTAGAAGAAGATGAAGCTATGGTGATGGAAATAGCAAAGTTGAAAGAAGAACAAAGAAATTTAGAAGAAGAGCTTCAAGGAATGAACAAAAGATTAGAAACAACTGAGAAAAGACCACAACAAATGATGGCTTTTTTATGTAATGTCGTTGAAGATCCTCAAATTTTGTCTAGAATACTAAATGAAAGAGAGAGTAAAAAATTTGTTGATAACAAGAAACGACGGTTGATATCTCCGGTGGCTAAGGCGGCCGTGACGGCGGCAACGACGTCAACTTCCTCGGAGTCATCGGGCATGGCGGTGGCAAATTCGGTGAAGATGGAGTTTGAGGAAGATGAGGTAACGGTTGGTAATAACATGATGTCGTCGTCGCCGGAGCTTGGTTTTGAAATTGATTATTTGCACCGTGCACCACCGCAGGAGGTGGCTCCGGTGGGTGGTTGGTGGGGGCAGATGGAGTTTGGACAGATGGGTTATAGGCGTGATTGTGAAGTTCCACGGATGCCGGTGTTGTCTCCGACGCCGGCGCCGATGATGTGGGGTGAGAATAGAAGTGATAGTAGTAAAAAGGGGGGTGTCGGAAATTTCAATGAAATGGCGGCGGAAAATAGTAAGTTGCCACCTTATCCTTTTTCGTTGTTAGAAGGTGGCTTTTAG

Protein sequence

>MS.gene042968.t1

MGMEQNNVIAPFIMKTYHMVNEPNTDNLIKWGPSNNSFIVLDPLEFSHSLLPLFFKHNNFSSFVRQLNTYVKFEDLEEDEAMVMEIAKLKEEQRNLEEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNERESKKFVDNKKRRLISPVAKAAVTAATTSTSSESSGMAVANSVKMEFEEDEVTVGNNMMSSSPELGFEIDYLHRAPPQEVAPVGGWWGQMEFGQMGYRRDCEVPRMPVLSPTPAPMMWGENRSDSSKKGGVGNFNEMAAENSKLPPYPFSLLEGGF