Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04298.t1 | GAU44342.1 | 92.1 | 189 | 11 | 2 | 1 | 189 | 1 | 185 | 4.20E-89 | 337.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04298.t1 | Q9FGJ3 | 83.6 | 122 | 20 | 0 | 1 | 122 | 1 | 122 | 1.3e-51 | 204.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04298.t1 | A0A2Z6P713 | 92.1 | 189 | 11 | 2 | 1 | 189 | 1 | 185 | 3.0e-89 | 337.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04298.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04298.t1 | MTR_3g058980 | 98.421 | 190 | 2 | 1 | 1 | 189 | 1 | 190 | 6.56e-137 | 380 |
| MS.gene04298.t1 | MTR_5g095740 | 77.202 | 193 | 31 | 6 | 1 | 189 | 1 | 184 | 8.62e-93 | 268 |
| MS.gene04298.t1 | MTR_2g026710 | 80.328 | 122 | 14 | 1 | 1 | 122 | 1 | 112 | 6.45e-66 | 199 |
| MS.gene04298.t1 | MTR_7g061270 | 73.684 | 133 | 24 | 3 | 13 | 135 | 9 | 140 | 7.43e-63 | 192 |
| MS.gene04298.t1 | MTR_7g100650 | 73.684 | 133 | 24 | 3 | 13 | 135 | 9 | 140 | 1.81e-62 | 191 |
| MS.gene04298.t1 | MTR_8g091720 | 73.438 | 128 | 32 | 1 | 23 | 150 | 24 | 149 | 8.14e-62 | 191 |
| MS.gene04298.t1 | MTR_1g072790 | 67.939 | 131 | 40 | 1 | 1 | 129 | 1 | 131 | 7.10e-61 | 187 |
| MS.gene04298.t1 | MTR_8g093920 | 63.504 | 137 | 41 | 1 | 26 | 153 | 39 | 175 | 5.38e-60 | 186 |
| MS.gene04298.t1 | MTR_4g133938 | 71.074 | 121 | 27 | 1 | 1 | 121 | 1 | 113 | 4.05e-58 | 179 |
| MS.gene04298.t1 | MTR_4g133952 | 67.647 | 102 | 33 | 0 | 21 | 122 | 52 | 153 | 3.55e-50 | 162 |
| MS.gene04298.t1 | MTR_1g088860 | 71.875 | 96 | 27 | 0 | 26 | 121 | 35 | 130 | 3.85e-50 | 160 |
| MS.gene04298.t1 | MTR_0392s0020 | 62.727 | 110 | 38 | 1 | 13 | 122 | 7 | 113 | 7.63e-49 | 155 |
| MS.gene04298.t1 | MTR_4g119500 | 67.010 | 97 | 32 | 0 | 26 | 122 | 21 | 117 | 1.64e-48 | 154 |
| MS.gene04298.t1 | MTR_1g039040 | 68.421 | 95 | 30 | 0 | 26 | 120 | 5 | 99 | 4.63e-47 | 152 |
| MS.gene04298.t1 | MTR_1g083070 | 61.957 | 92 | 35 | 0 | 27 | 118 | 4 | 95 | 3.78e-39 | 130 |
| MS.gene04298.t1 | MTR_1g029070 | 51.579 | 95 | 46 | 0 | 26 | 120 | 51 | 145 | 4.87e-29 | 106 |
| MS.gene04298.t1 | MTR_5g095900 | 47.368 | 95 | 47 | 1 | 24 | 115 | 10 | 104 | 2.52e-23 | 91.7 |
| MS.gene04298.t1 | MTR_1g029100 | 43.421 | 76 | 43 | 0 | 32 | 107 | 7 | 82 | 1.42e-19 | 79.3 |
| MS.gene04298.t1 | MTR_1g028480 | 53.125 | 64 | 30 | 0 | 57 | 120 | 19 | 82 | 5.53e-19 | 78.6 |
| MS.gene04298.t1 | MTR_4g112380 | 36.250 | 80 | 51 | 0 | 28 | 107 | 12 | 91 | 4.88e-16 | 72.0 |
| MS.gene04298.t1 | MTR_2g056000 | 36.250 | 80 | 51 | 0 | 28 | 107 | 42 | 121 | 6.39e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04298.t1 | AT4G14540 | 74.534 | 161 | 30 | 4 | 1 | 156 | 1 | 155 | 8.46e-73 | 217 |
| MS.gene04298.t1 | AT5G47640 | 83.607 | 122 | 20 | 0 | 1 | 122 | 1 | 122 | 4.95e-68 | 206 |
| MS.gene04298.t1 | AT2G37060 | 60.241 | 166 | 53 | 4 | 1 | 155 | 1 | 164 | 2.20e-60 | 186 |
| MS.gene04298.t1 | AT2G37060 | 60.241 | 166 | 53 | 4 | 1 | 155 | 1 | 164 | 2.20e-60 | 186 |
| MS.gene04298.t1 | AT2G37060 | 60.241 | 166 | 53 | 4 | 1 | 155 | 1 | 164 | 2.20e-60 | 186 |
| MS.gene04298.t1 | AT3G53340 | 79.592 | 98 | 20 | 0 | 23 | 120 | 25 | 122 | 4.36e-57 | 177 |
| MS.gene04298.t1 | AT3G53340 | 79.592 | 98 | 20 | 0 | 23 | 120 | 25 | 122 | 4.36e-57 | 177 |
| MS.gene04298.t1 | AT2G38880 | 71.667 | 120 | 28 | 2 | 1 | 120 | 1 | 114 | 5.27e-57 | 176 |
| MS.gene04298.t1 | AT2G38880 | 71.667 | 120 | 28 | 2 | 1 | 120 | 1 | 114 | 7.31e-57 | 176 |
| MS.gene04298.t1 | AT2G38880 | 71.667 | 120 | 28 | 2 | 1 | 120 | 1 | 114 | 7.31e-57 | 176 |
| MS.gene04298.t1 | AT2G38880 | 71.667 | 120 | 28 | 2 | 1 | 120 | 1 | 114 | 7.31e-57 | 176 |
| MS.gene04298.t1 | AT3G53340 | 80.208 | 96 | 19 | 0 | 23 | 118 | 25 | 120 | 4.90e-56 | 174 |
| MS.gene04298.t1 | AT3G53340 | 80.208 | 96 | 19 | 0 | 23 | 118 | 25 | 120 | 4.90e-56 | 174 |
| MS.gene04298.t1 | AT2G13570 | 81.443 | 97 | 18 | 0 | 26 | 122 | 35 | 131 | 1.85e-55 | 175 |
| MS.gene04298.t1 | AT3G53340 | 78.947 | 95 | 20 | 0 | 23 | 117 | 25 | 119 | 2.43e-55 | 171 |
| MS.gene04298.t1 | AT2G38880 | 71.795 | 117 | 27 | 2 | 1 | 117 | 1 | 111 | 2.63e-55 | 171 |
| MS.gene04298.t1 | AT2G38880 | 71.795 | 117 | 27 | 2 | 1 | 117 | 1 | 111 | 5.77e-55 | 171 |
| MS.gene04298.t1 | AT2G38880 | 71.795 | 117 | 27 | 2 | 1 | 117 | 1 | 111 | 5.77e-55 | 171 |
| MS.gene04298.t1 | AT2G38880 | 71.795 | 117 | 27 | 2 | 1 | 117 | 1 | 111 | 5.77e-55 | 171 |
| MS.gene04298.t1 | AT2G38880 | 72.414 | 116 | 26 | 2 | 1 | 116 | 1 | 110 | 5.92e-55 | 171 |
| MS.gene04298.t1 | AT2G38880 | 71.795 | 117 | 27 | 2 | 1 | 117 | 1 | 111 | 1.95e-54 | 171 |
| MS.gene04298.t1 | AT2G38880 | 71.795 | 117 | 27 | 2 | 1 | 117 | 1 | 111 | 1.95e-54 | 171 |
| MS.gene04298.t1 | AT5G47670 | 52.866 | 157 | 69 | 2 | 16 | 167 | 18 | 174 | 9.93e-52 | 165 |
| MS.gene04298.t1 | AT5G47670 | 52.866 | 157 | 69 | 2 | 16 | 167 | 47 | 203 | 2.53e-51 | 165 |
| MS.gene04298.t1 | AT5G47670 | 52.866 | 157 | 69 | 2 | 16 | 167 | 47 | 203 | 2.53e-51 | 165 |
| MS.gene04298.t1 | AT2G47810 | 71.717 | 99 | 28 | 0 | 23 | 121 | 47 | 145 | 1.57e-50 | 160 |
| MS.gene04298.t1 | AT1G21970 | 61.386 | 101 | 39 | 0 | 26 | 126 | 58 | 158 | 1.91e-45 | 150 |
| MS.gene04298.t1 | AT1G09030 | 60.417 | 96 | 38 | 0 | 27 | 122 | 3 | 98 | 2.56e-42 | 139 |
| MS.gene04298.t1 | AT5G08190 | 35.354 | 99 | 62 | 2 | 27 | 123 | 11 | 109 | 8.58e-18 | 77.0 |
| MS.gene04298.t1 | AT5G23090 | 33.673 | 98 | 63 | 2 | 28 | 123 | 12 | 109 | 3.16e-17 | 75.1 |
| MS.gene04298.t1 | AT5G08190 | 38.750 | 80 | 49 | 0 | 28 | 107 | 12 | 91 | 4.01e-17 | 75.1 |
| MS.gene04298.t1 | AT5G23090 | 37.179 | 78 | 49 | 0 | 28 | 105 | 12 | 89 | 1.15e-16 | 73.9 |
| MS.gene04298.t1 | AT5G23090 | 37.179 | 78 | 49 | 0 | 28 | 105 | 12 | 89 | 1.15e-16 | 73.9 |
| MS.gene04298.t1 | AT5G23090 | 37.179 | 78 | 49 | 0 | 28 | 105 | 12 | 89 | 1.15e-16 | 73.9 |
| MS.gene04298.t1 | AT5G23090 | 37.097 | 62 | 39 | 0 | 44 | 105 | 15 | 76 | 3.22e-12 | 61.6 |
| MS.gene04298.t1 | AT2G27470 | 34.091 | 88 | 53 | 1 | 32 | 114 | 11 | 98 | 1.50e-11 | 62.0 |
Find 73 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGTGGGCCTGGGTATCC+TGG | 0.171258 | 3.4:+55907890 | MS.gene04298:CDS |
| TCCCTTAAGAAATGTCTATC+TGG | 0.247157 | 3.4:-55907936 | None:intergenic |
| GGGCCTGGGTATCCTGGGCC+TGG | 0.280888 | 3.4:+55907896 | MS.gene04298:CDS |
| AAGGTTATCTTCAGAGGTTT+AGG | 0.283842 | 3.4:+55907696 | MS.gene04298:CDS |
| CTTTGGGCGATGACGACGTT+GGG | 0.306849 | 3.4:+55907647 | MS.gene04298:CDS |
| ATCCTGCTTACGTTTGCTAT+TGG | 0.314552 | 3.4:-55907470 | None:intergenic |
| CAACGGCGATGATTTGCTTT+GGG | 0.342319 | 3.4:+55907631 | MS.gene04298:CDS |
| CAGGGACACGTGTATGGTTC+TGG | 0.350044 | 3.4:+55907839 | MS.gene04298:CDS |
| CTTCTCTCGCTGACACTTAT+CGG | 0.356219 | 3.4:-55907597 | None:intergenic |
| TGGTGGGTTTCATCAAGTTA+TGG | 0.357962 | 3.4:+55907865 | MS.gene04298:CDS |
| TCTTATGAGAGTGGTGGTTA+TGG | 0.366998 | 3.4:+55907794 | MS.gene04298:CDS |
| TCAACGGCGATGATTTGCTT+TGG | 0.384468 | 3.4:+55907630 | MS.gene04298:CDS |
| AGGGTGGGCCTGGGTATCCT+GGG | 0.386249 | 3.4:+55907891 | MS.gene04298:CDS |
| AGGTTATCTTCAGAGGTTTA+GGG | 0.388502 | 3.4:+55907697 | MS.gene04298:CDS |
| GGTGGGTTTCATCAAGTTAT+GGG | 0.401138 | 3.4:+55907866 | MS.gene04298:CDS |
| GGCCTGGGTATCCTGGGCCT+GGG | 0.402305 | 3.4:+55907897 | MS.gene04298:CDS |
| GTTATGGGTAAGGGTGGGCC+TGG | 0.416967 | 3.4:+55907881 | MS.gene04298:CDS |
| TTTGAGATCTTCGCGTTCGC+TGG | 0.427710 | 3.4:-55907509 | None:intergenic |
| GTGTATGGTTCTGGTGGTGG+TGG | 0.434372 | 3.4:+55907848 | MS.gene04298:CDS |
| AGTGGTGGTTATGGTGGTGG+TGG | 0.437086 | 3.4:+55907803 | MS.gene04298:CDS |
| CACGTGTATGGTTCTGGTGG+TGG | 0.446845 | 3.4:+55907845 | MS.gene04298:CDS |
| TCCTCCTCCGTGTGGTCCGC+CGG | 0.450553 | 3.4:-55907396 | None:intergenic |
| GAGAGTGGTGGTTATGGTGG+TGG | 0.453972 | 3.4:+55907800 | MS.gene04298:CDS |
| ATGCATCAGGGACACGTGTA+TGG | 0.456937 | 3.4:+55907833 | MS.gene04298:CDS |
| CCTGGGCCTGGGTCTAATAC+TGG | 0.461983 | 3.4:+55907908 | MS.gene04298:CDS |
| GGAGATGGAAGGAGAGAAGA+CGG | 0.462758 | 3.4:+55907718 | MS.gene04298:CDS |
| TCTTCAGAGGTTTAGGGAGA+TGG | 0.465400 | 3.4:+55907703 | MS.gene04298:CDS |
| TGGTCCGCCGGAGTCGTTGT+CGG | 0.473319 | 3.4:-55907384 | None:intergenic |
| TTCCAATAGCAAACGTAAGC+AGG | 0.483654 | 3.4:+55907468 | MS.gene04298:CDS |
| TGGTGGAGTTATGATGCATC+AGG | 0.485483 | 3.4:+55907820 | MS.gene04298:CDS |
| TGCTTACGTTTGCTATTGGA+AGG | 0.497410 | 3.4:-55907466 | None:intergenic |
| CCCTTAAGAAATGTCTATCT+GGG | 0.498089 | 3.4:-55907935 | None:intergenic |
| GTTTCATCAAGTTATGGGTA+AGG | 0.498474 | 3.4:+55907871 | MS.gene04298:CDS |
| TTATGGGTAAGGGTGGGCCT+GGG | 0.517687 | 3.4:+55907882 | MS.gene04298:CDS |
| CGTTTGCTATTGGAAGGAAT+CGG | 0.519562 | 3.4:-55907460 | None:intergenic |
| GATGACGACGTTGGGGTTCG+AGG | 0.521900 | 3.4:+55907655 | MS.gene04298:CDS |
| TATGAGAGTGGTGGTTATGG+TGG | 0.523250 | 3.4:+55907797 | MS.gene04298:CDS |
| CGTTGAAAGGTTATCTTCAG+AGG | 0.526003 | 3.4:+55907690 | MS.gene04298:CDS |
| CGTGATAAAGACGCGCCGCA+AGG | 0.530875 | 3.4:+55907749 | MS.gene04298:CDS |
| CCAGTATTAGACCCAGGCCC+AGG | 0.531565 | 3.4:-55907908 | None:intergenic |
| AATAATAGTTCTTATGAGAG+TGG | 0.535058 | 3.4:+55907785 | MS.gene04298:CDS |
| GCGGACTCCGACAACGACTC+CGG | 0.535824 | 3.4:+55907377 | MS.gene04298:CDS |
| ACACTTATCGGAGGCTTCGC+CGG | 0.538515 | 3.4:-55907585 | None:intergenic |
| TCCGGCGGACCACACGGAGG+AGG | 0.541140 | 3.4:+55907395 | MS.gene04298:CDS |
| AACGACTCCGGCGGACCACA+CGG | 0.545064 | 3.4:+55907389 | MS.gene04298:CDS |
| GACCCAGGCCCAGGATACCC+AGG | 0.548272 | 3.4:-55907899 | None:intergenic |
| TGTATGGTTCTGGTGGTGGT+GGG | 0.552197 | 3.4:+55907849 | MS.gene04298:CDS |
| GAGTTCATCAGCTTCATCAC+CGG | 0.553474 | 3.4:+55907566 | MS.gene04298:CDS |
| GCTTTGGGCGATGACGACGT+TGG | 0.557062 | 3.4:+55907646 | MS.gene04298:CDS |
| GAGAAGCGGAAGACGATCAA+CGG | 0.557275 | 3.4:+55907614 | MS.gene04298:CDS |
| CAGAGGTTTAGGGAGATGGA+AGG | 0.558997 | 3.4:+55907707 | MS.gene04298:CDS |
| GAGTATGTTGAGCCGTTGAA+AGG | 0.561542 | 3.4:+55907677 | MS.gene04298:CDS |
| CATCAAGTTATGGGTAAGGG+TGG | 0.563450 | 3.4:+55907875 | MS.gene04298:CDS |
| ATAAGTGTCAGCGAGAGAAG+CGG | 0.570892 | 3.4:+55907600 | MS.gene04298:CDS |
| TTTCATCAAGTTATGGGTAA+GGG | 0.591667 | 3.4:+55907872 | MS.gene04298:CDS |
| ATCAAGTTATGGGTAAGGGT+GGG | 0.596245 | 3.4:+55907876 | MS.gene04298:CDS |
| AGGAATCGGTCTTGTTCTCG+TGG | 0.605753 | 3.4:-55907446 | None:intergenic |
| GGCCTGGGTCTAATACTGGT+AGG | 0.607014 | 3.4:+55907912 | MS.gene04298:CDS |
| CTCTGAAGATAACCTTTCAA+CGG | 0.607767 | 3.4:-55907689 | None:intergenic |
| AATAGTTCTTATGAGAGTGG+TGG | 0.624003 | 3.4:+55907788 | MS.gene04298:CDS |
| ATGGAAGGAGAGAAGACGGT+GGG | 0.627652 | 3.4:+55907722 | MS.gene04298:CDS |
| GATGGAAGGAGAGAAGACGG+TGG | 0.628393 | 3.4:+55907721 | MS.gene04298:CDS |
| TTTGGGCGATGACGACGTTG+GGG | 0.632604 | 3.4:+55907648 | MS.gene04298:CDS |
| GAAGATCTCAAAAGACGCAA+AGG | 0.638772 | 3.4:+55907520 | MS.gene04298:CDS |
| GACTCCGACAACGACTCCGG+CGG | 0.639609 | 3.4:+55907380 | MS.gene04298:CDS |
| CTCTCGCTGACACTTATCGG+AGG | 0.641421 | 3.4:-55907594 | None:intergenic |
| TTAACACTATTAGAACCTTG+CGG | 0.662763 | 3.4:-55907764 | None:intergenic |
| GGACACGTGTATGGTTCTGG+TGG | 0.663222 | 3.4:+55907842 | MS.gene04298:CDS |
| GGCCTACCAGTATTAGACCC+AGG | 0.676497 | 3.4:-55907914 | None:intergenic |
| GGAGGAGGATCAAACGCACA+CGG | 0.685824 | 3.4:+55907410 | MS.gene04298:CDS |
| GGTGGAGTTATGATGCATCA+GGG | 0.718962 | 3.4:+55907821 | MS.gene04298:CDS |
| GACTCCGGCGGACCACACGG+AGG | 0.719515 | 3.4:+55907392 | MS.gene04298:CDS |
| GCGTTTGATCCTCCTCCGTG+TGG | 0.723554 | 3.4:-55907404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATAATAGTTCTTATGAGAG+TGG | + | chr3.4:55907785-55907804 | MS.gene04298:CDS | 25.0% |
| TTAACACTATTAGAACCTTG+CGG | - | chr3.4:55907767-55907786 | None:intergenic | 30.0% | |
| TTTCATCAAGTTATGGGTAA+GGG | + | chr3.4:55907872-55907891 | MS.gene04298:CDS | 30.0% | |
| AAGGTTATCTTCAGAGGTTT+AGG | + | chr3.4:55907696-55907715 | MS.gene04298:CDS | 35.0% | |
| AATAGTTCTTATGAGAGTGG+TGG | + | chr3.4:55907788-55907807 | MS.gene04298:CDS | 35.0% | |
| AGGTTATCTTCAGAGGTTTA+GGG | + | chr3.4:55907697-55907716 | MS.gene04298:CDS | 35.0% | |
| GTTTCATCAAGTTATGGGTA+AGG | + | chr3.4:55907871-55907890 | MS.gene04298:CDS | 35.0% | |
| ! | CTCTGAAGATAACCTTTCAA+CGG | - | chr3.4:55907692-55907711 | None:intergenic | 35.0% |
| ATCAAGTTATGGGTAAGGGT+GGG | + | chr3.4:55907876-55907895 | MS.gene04298:CDS | 40.0% | |
| CGTTGAAAGGTTATCTTCAG+AGG | + | chr3.4:55907690-55907709 | MS.gene04298:CDS | 40.0% | |
| GAAGATCTCAAAAGACGCAA+AGG | + | chr3.4:55907520-55907539 | MS.gene04298:CDS | 40.0% | |
| TCTTATGAGAGTGGTGGTTA+TGG | + | chr3.4:55907794-55907813 | MS.gene04298:CDS | 40.0% | |
| TTCCAATAGCAAACGTAAGC+AGG | + | chr3.4:55907468-55907487 | MS.gene04298:CDS | 40.0% | |
| ! | GGTGGGTTTCATCAAGTTAT+GGG | + | chr3.4:55907866-55907885 | MS.gene04298:CDS | 40.0% |
| !! | ATCCTGCTTACGTTTGCTAT+TGG | - | chr3.4:55907473-55907492 | None:intergenic | 40.0% |
| !! | CGTTTGCTATTGGAAGGAAT+CGG | - | chr3.4:55907463-55907482 | None:intergenic | 40.0% |
| !! | TGCTTACGTTTGCTATTGGA+AGG | - | chr3.4:55907469-55907488 | None:intergenic | 40.0% |
| !! | TGGTGGGTTTCATCAAGTTA+TGG | + | chr3.4:55907865-55907884 | MS.gene04298:CDS | 40.0% |
| ATAAGTGTCAGCGAGAGAAG+CGG | + | chr3.4:55907600-55907619 | MS.gene04298:CDS | 45.0% | |
| CATCAAGTTATGGGTAAGGG+TGG | + | chr3.4:55907875-55907894 | MS.gene04298:CDS | 45.0% | |
| CTTCTCTCGCTGACACTTAT+CGG | - | chr3.4:55907600-55907619 | None:intergenic | 45.0% | |
| GAGTATGTTGAGCCGTTGAA+AGG | + | chr3.4:55907677-55907696 | MS.gene04298:CDS | 45.0% | |
| GAGTTCATCAGCTTCATCAC+CGG | + | chr3.4:55907566-55907585 | MS.gene04298:CDS | 45.0% | |
| GGTGGAGTTATGATGCATCA+GGG | + | chr3.4:55907821-55907840 | MS.gene04298:CDS | 45.0% | |
| TATGAGAGTGGTGGTTATGG+TGG | + | chr3.4:55907797-55907816 | MS.gene04298:CDS | 45.0% | |
| TCTTCAGAGGTTTAGGGAGA+TGG | + | chr3.4:55907703-55907722 | MS.gene04298:CDS | 45.0% | |
| TGGTGGAGTTATGATGCATC+AGG | + | chr3.4:55907820-55907839 | MS.gene04298:CDS | 45.0% | |
| !! | CAACGGCGATGATTTGCTTT+GGG | + | chr3.4:55907631-55907650 | MS.gene04298:CDS | 45.0% |
| !! | TCAACGGCGATGATTTGCTT+TGG | + | chr3.4:55907630-55907649 | MS.gene04298:CDS | 45.0% |
| ATGCATCAGGGACACGTGTA+TGG | + | chr3.4:55907833-55907852 | MS.gene04298:CDS | 50.0% | |
| ATGGAAGGAGAGAAGACGGT+GGG | + | chr3.4:55907722-55907741 | MS.gene04298:CDS | 50.0% | |
| CAGAGGTTTAGGGAGATGGA+AGG | + | chr3.4:55907707-55907726 | MS.gene04298:CDS | 50.0% | |
| GAGAAGCGGAAGACGATCAA+CGG | + | chr3.4:55907614-55907633 | MS.gene04298:CDS | 50.0% | |
| GGAGATGGAAGGAGAGAAGA+CGG | + | chr3.4:55907718-55907737 | MS.gene04298:CDS | 50.0% | |
| ! | TTTGAGATCTTCGCGTTCGC+TGG | - | chr3.4:55907512-55907531 | None:intergenic | 50.0% |
| !! | AGGAATCGGTCTTGTTCTCG+TGG | - | chr3.4:55907449-55907468 | None:intergenic | 50.0% |
| !! | TGTATGGTTCTGGTGGTGGT+GGG | + | chr3.4:55907849-55907868 | MS.gene04298:CDS | 50.0% |
| ACACTTATCGGAGGCTTCGC+CGG | - | chr3.4:55907588-55907607 | None:intergenic | 55.0% | |
| CAGGGACACGTGTATGGTTC+TGG | + | chr3.4:55907839-55907858 | MS.gene04298:CDS | 55.0% | |
| CTCTCGCTGACACTTATCGG+AGG | - | chr3.4:55907597-55907616 | None:intergenic | 55.0% | |
| CTTTGGGCGATGACGACGTT+GGG | + | chr3.4:55907647-55907666 | MS.gene04298:CDS | 55.0% | |
| GAGAGTGGTGGTTATGGTGG+TGG | + | chr3.4:55907800-55907819 | MS.gene04298:CDS | 55.0% | |
| GATGGAAGGAGAGAAGACGG+TGG | + | chr3.4:55907721-55907740 | MS.gene04298:CDS | 55.0% | |
| GGAGGAGGATCAAACGCACA+CGG | + | chr3.4:55907410-55907429 | MS.gene04298:CDS | 55.0% | |
| GGCCTACCAGTATTAGACCC+AGG | - | chr3.4:55907917-55907936 | None:intergenic | 55.0% | |
| GGCCTGGGTCTAATACTGGT+AGG | + | chr3.4:55907912-55907931 | MS.gene04298:CDS | 55.0% | |
| TTATGGGTAAGGGTGGGCCT+GGG | + | chr3.4:55907882-55907901 | MS.gene04298:CDS | 55.0% | |
| TTTGGGCGATGACGACGTTG+GGG | + | chr3.4:55907648-55907667 | MS.gene04298:CDS | 55.0% | |
| !! | AGTGGTGGTTATGGTGGTGG+TGG | + | chr3.4:55907803-55907822 | MS.gene04298:CDS | 55.0% |
| !! | CACGTGTATGGTTCTGGTGG+TGG | + | chr3.4:55907845-55907864 | MS.gene04298:CDS | 55.0% |
| !! | GGACACGTGTATGGTTCTGG+TGG | + | chr3.4:55907842-55907861 | MS.gene04298:CDS | 55.0% |
| !! | GTGTATGGTTCTGGTGGTGG+TGG | + | chr3.4:55907848-55907867 | MS.gene04298:CDS | 55.0% |
| CCAGTATTAGACCCAGGCCC+AGG | - | chr3.4:55907911-55907930 | None:intergenic | 60.0% | |
| CCTGGGCCTGGGTCTAATAC+TGG | + | chr3.4:55907908-55907927 | MS.gene04298:CDS | 60.0% | |
| CGTGATAAAGACGCGCCGCA+AGG | + | chr3.4:55907749-55907768 | MS.gene04298:CDS | 60.0% | |
| GATGACGACGTTGGGGTTCG+AGG | + | chr3.4:55907655-55907674 | MS.gene04298:CDS | 60.0% | |
| GCGTTTGATCCTCCTCCGTG+TGG | - | chr3.4:55907407-55907426 | None:intergenic | 60.0% | |
| GTTATGGGTAAGGGTGGGCC+TGG | + | chr3.4:55907881-55907900 | MS.gene04298:CDS | 60.0% | |
| ! | GCTTTGGGCGATGACGACGT+TGG | + | chr3.4:55907646-55907665 | MS.gene04298:CDS | 60.0% |
| AACGACTCCGGCGGACCACA+CGG | + | chr3.4:55907389-55907408 | MS.gene04298:CDS | 65.0% | |
| AAGGGTGGGCCTGGGTATCC+TGG | + | chr3.4:55907890-55907909 | MS.gene04298:CDS | 65.0% | |
| AGGGTGGGCCTGGGTATCCT+GGG | + | chr3.4:55907891-55907910 | MS.gene04298:CDS | 65.0% | |
| GACTCCGACAACGACTCCGG+CGG | + | chr3.4:55907380-55907399 | MS.gene04298:CDS | 65.0% | |
| GCGGACTCCGACAACGACTC+CGG | + | chr3.4:55907377-55907396 | MS.gene04298:CDS | 65.0% | |
| TGGTCCGCCGGAGTCGTTGT+CGG | - | chr3.4:55907387-55907406 | None:intergenic | 65.0% | |
| GACCCAGGCCCAGGATACCC+AGG | - | chr3.4:55907902-55907921 | None:intergenic | 70.0% | |
| GGCCTGGGTATCCTGGGCCT+GGG | + | chr3.4:55907897-55907916 | MS.gene04298:CDS | 70.0% | |
| TCCTCCTCCGTGTGGTCCGC+CGG | - | chr3.4:55907399-55907418 | None:intergenic | 70.0% | |
| GACTCCGGCGGACCACACGG+AGG | + | chr3.4:55907392-55907411 | MS.gene04298:CDS | 75.0% | |
| GGGCCTGGGTATCCTGGGCC+TGG | + | chr3.4:55907896-55907915 | MS.gene04298:CDS | 75.0% | |
| TCCGGCGGACCACACGGAGG+AGG | + | chr3.4:55907395-55907414 | MS.gene04298:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 55907374 | 55907943 | 55907374 | ID=MS.gene04298 |
| chr3.4 | mRNA | 55907374 | 55907943 | 55907374 | ID=MS.gene04298.t1;Parent=MS.gene04298 |
| chr3.4 | exon | 55907374 | 55907943 | 55907374 | ID=MS.gene04298.t1.exon1;Parent=MS.gene04298.t1 |
| chr3.4 | CDS | 55907374 | 55907943 | 55907374 | ID=cds.MS.gene04298.t1;Parent=MS.gene04298.t1 |
| Gene Sequence |
| Protein sequence |
