Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043071.t1 | XP_003605474.1 | 71.2 | 229 | 59 | 2 | 1 | 222 | 1 | 229 | 1.60E-79 | 305.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043071.t1 | Q9FJK3 | 55.2 | 154 | 68 | 1 | 1 | 154 | 1 | 153 | 6.9e-39 | 162.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043071.t1 | G7JM29 | 71.2 | 229 | 59 | 2 | 1 | 222 | 1 | 229 | 1.2e-79 | 305.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene043071.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043071.t1 | MTR_4g031910 | 71.795 | 234 | 49 | 2 | 1 | 222 | 1 | 229 | 2.52e-112 | 321 |
MS.gene043071.t1 | MTR_4g032290 | 68.033 | 244 | 43 | 2 | 1 | 222 | 1 | 231 | 2.66e-107 | 308 |
MS.gene043071.t1 | MTR_4g032620 | 58.442 | 231 | 87 | 1 | 1 | 222 | 1 | 231 | 1.36e-95 | 278 |
MS.gene043071.t1 | MTR_8g036130 | 56.275 | 247 | 83 | 4 | 1 | 222 | 1 | 247 | 1.32e-87 | 259 |
MS.gene043071.t1 | MTR_4g032260 | 78.344 | 157 | 34 | 0 | 1 | 157 | 1 | 157 | 1.94e-78 | 233 |
MS.gene043071.t1 | MTR_3g065100 | 48.963 | 241 | 98 | 4 | 1 | 219 | 1 | 238 | 1.24e-64 | 200 |
MS.gene043071.t1 | MTR_3g466980 | 45.259 | 232 | 102 | 5 | 1 | 218 | 1 | 221 | 7.96e-63 | 195 |
MS.gene043071.t1 | MTR_2g035610 | 72.951 | 122 | 33 | 0 | 1 | 122 | 1 | 122 | 2.27e-51 | 162 |
MS.gene043071.t1 | MTR_4g032270 | 54.745 | 137 | 47 | 2 | 94 | 222 | 2 | 131 | 1.72e-45 | 148 |
MS.gene043071.t1 | MTR_5g075380 | 47.742 | 155 | 80 | 1 | 1 | 155 | 1 | 154 | 4.23e-45 | 148 |
MS.gene043071.t1 | MTR_4g063790 | 44.805 | 154 | 85 | 0 | 1 | 154 | 1 | 154 | 6.18e-45 | 148 |
MS.gene043071.t1 | MTR_3g031100 | 35.714 | 224 | 132 | 4 | 1 | 219 | 1 | 217 | 5.35e-43 | 145 |
MS.gene043071.t1 | MTR_3g467080 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 1.82e-42 | 141 |
MS.gene043071.t1 | MTR_3g466830 | 47.020 | 151 | 79 | 1 | 3 | 153 | 2 | 151 | 1.86e-42 | 141 |
MS.gene043071.t1 | MTR_5g047580 | 45.513 | 156 | 83 | 2 | 1 | 156 | 1 | 154 | 6.89e-41 | 137 |
MS.gene043071.t1 | MTR_2g016210 | 39.011 | 182 | 109 | 2 | 1 | 180 | 1 | 182 | 7.04e-40 | 137 |
MS.gene043071.t1 | MTR_3g466890 | 44.737 | 152 | 83 | 1 | 3 | 154 | 2 | 152 | 1.13e-38 | 131 |
MS.gene043071.t1 | MTR_1g077390 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 2.23e-38 | 130 |
MS.gene043071.t1 | MTR_1g090783 | 41.558 | 154 | 88 | 2 | 3 | 156 | 2 | 153 | 1.23e-35 | 124 |
MS.gene043071.t1 | MTR_1g077320 | 44.872 | 156 | 84 | 2 | 1 | 156 | 1 | 154 | 3.02e-35 | 122 |
MS.gene043071.t1 | MTR_7g011950 | 44.231 | 156 | 85 | 2 | 1 | 156 | 1 | 154 | 7.63e-35 | 122 |
MS.gene043071.t1 | MTR_1g084950 | 45.513 | 156 | 83 | 2 | 1 | 156 | 1 | 154 | 2.56e-34 | 120 |
MS.gene043071.t1 | MTR_3g465410 | 43.651 | 126 | 71 | 0 | 29 | 154 | 1 | 126 | 8.22e-34 | 118 |
MS.gene043071.t1 | MTR_4g028720 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 1.80e-33 | 118 |
MS.gene043071.t1 | MTR_1g077300 | 44.231 | 156 | 83 | 2 | 1 | 156 | 1 | 152 | 1.43e-32 | 115 |
MS.gene043071.t1 | MTR_1g090710 | 37.662 | 154 | 95 | 1 | 1 | 154 | 1 | 153 | 4.59e-32 | 114 |
MS.gene043071.t1 | MTR_1g090697 | 39.333 | 150 | 89 | 2 | 1 | 150 | 1 | 148 | 1.55e-30 | 110 |
MS.gene043071.t1 | MTR_4g028800 | 75.714 | 70 | 15 | 1 | 1 | 70 | 1 | 68 | 5.68e-30 | 106 |
MS.gene043071.t1 | MTR_3g031240 | 33.333 | 156 | 104 | 0 | 1 | 156 | 1 | 156 | 6.32e-29 | 107 |
MS.gene043071.t1 | MTR_7g055800 | 49.573 | 117 | 31 | 2 | 1 | 117 | 1 | 89 | 8.63e-28 | 101 |
MS.gene043071.t1 | MTR_2g035580 | 38.854 | 157 | 95 | 1 | 1 | 157 | 1 | 156 | 3.05e-27 | 102 |
MS.gene043071.t1 | MTR_3g466900 | 39.837 | 123 | 73 | 1 | 32 | 154 | 2 | 123 | 1.53e-26 | 99.8 |
MS.gene043071.t1 | MTR_7g055790 | 52.252 | 111 | 35 | 1 | 1 | 111 | 59 | 151 | 1.62e-25 | 97.4 |
MS.gene043071.t1 | MTR_7g106510 | 38.583 | 127 | 78 | 0 | 3 | 129 | 6 | 132 | 6.55e-24 | 99.4 |
MS.gene043071.t1 | MTR_4g019670 | 39.370 | 127 | 77 | 0 | 3 | 129 | 6 | 132 | 1.29e-23 | 98.6 |
MS.gene043071.t1 | MTR_3g466930 | 37.398 | 123 | 76 | 1 | 32 | 154 | 2 | 123 | 1.35e-23 | 92.0 |
MS.gene043071.t1 | MTR_5g047560 | 36.538 | 156 | 81 | 3 | 1 | 156 | 1 | 138 | 2.14e-23 | 91.7 |
MS.gene043071.t1 | MTR_7g055940 | 48.113 | 106 | 27 | 2 | 1 | 106 | 1 | 78 | 1.34e-22 | 87.8 |
MS.gene043071.t1 | MTR_3g093900 | 31.690 | 142 | 97 | 0 | 3 | 144 | 6 | 147 | 1.89e-21 | 92.4 |
MS.gene043071.t1 | MTR_2g035590 | 58.025 | 81 | 34 | 0 | 74 | 154 | 1 | 81 | 4.12e-20 | 82.0 |
MS.gene043071.t1 | MTR_1g114730 | 32.743 | 113 | 69 | 3 | 1 | 107 | 1 | 112 | 3.64e-14 | 70.9 |
MS.gene043071.t1 | MTR_6g018920 | 33.628 | 113 | 68 | 4 | 1 | 107 | 1 | 112 | 6.30e-14 | 70.1 |
MS.gene043071.t1 | MTR_6g005450 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 7.19e-13 | 67.0 |
MS.gene043071.t1 | MTR_6g005440 | 35.398 | 113 | 66 | 3 | 1 | 107 | 1 | 112 | 8.42e-12 | 63.5 |
MS.gene043071.t1 | MTR_4g084780 | 37.838 | 111 | 53 | 2 | 74 | 168 | 1 | 111 | 9.12e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043071.t1 | AT5G48670 | 55.195 | 154 | 68 | 1 | 1 | 154 | 1 | 153 | 3.17e-46 | 155 |
MS.gene043071.t1 | AT1G65330 | 41.711 | 187 | 95 | 3 | 3 | 176 | 2 | 187 | 2.40e-40 | 139 |
MS.gene043071.t1 | AT5G26630 | 44.503 | 191 | 95 | 2 | 1 | 181 | 1 | 190 | 6.67e-40 | 136 |
MS.gene043071.t1 | AT1G65300 | 45.395 | 152 | 82 | 1 | 3 | 154 | 2 | 152 | 1.35e-39 | 137 |
MS.gene043071.t1 | AT5G26650 | 36.667 | 210 | 114 | 4 | 5 | 204 | 3 | 203 | 3.24e-36 | 130 |
MS.gene043071.t1 | AT5G27960 | 40.476 | 168 | 89 | 3 | 5 | 162 | 3 | 169 | 1.02e-35 | 128 |
MS.gene043071.t1 | AT1G31630 | 36.905 | 168 | 95 | 3 | 3 | 161 | 2 | 167 | 7.48e-35 | 127 |
MS.gene043071.t1 | AT1G31640 | 39.073 | 151 | 90 | 2 | 3 | 153 | 2 | 150 | 4.12e-33 | 124 |
MS.gene043071.t1 | AT5G27810 | 55.914 | 93 | 41 | 0 | 29 | 121 | 1 | 93 | 1.98e-30 | 109 |
MS.gene043071.t1 | AT3G05860 | 37.342 | 158 | 98 | 1 | 1 | 158 | 1 | 157 | 2.47e-30 | 111 |
MS.gene043071.t1 | AT3G05860 | 37.342 | 158 | 98 | 1 | 1 | 158 | 1 | 157 | 3.76e-30 | 112 |
MS.gene043071.t1 | AT3G05860 | 37.342 | 158 | 98 | 1 | 1 | 158 | 1 | 157 | 4.09e-30 | 112 |
MS.gene043071.t1 | AT2G28700 | 36.810 | 163 | 98 | 2 | 1 | 161 | 1 | 160 | 6.44e-30 | 113 |
MS.gene043071.t1 | AT1G22590 | 31.481 | 162 | 107 | 1 | 1 | 162 | 1 | 158 | 1.97e-26 | 100 |
MS.gene043071.t1 | AT5G26580 | 33.766 | 154 | 87 | 2 | 1 | 154 | 1 | 139 | 6.11e-24 | 97.8 |
MS.gene043071.t1 | AT5G06500 | 34.395 | 157 | 101 | 2 | 1 | 157 | 1 | 155 | 3.13e-21 | 88.6 |
MS.gene043071.t1 | AT2G40210 | 37.984 | 129 | 79 | 1 | 1 | 129 | 1 | 128 | 1.68e-17 | 80.5 |
MS.gene043071.t1 | AT5G58890 | 38.583 | 127 | 67 | 5 | 6 | 123 | 6 | 130 | 4.67e-16 | 75.5 |
MS.gene043071.t1 | AT5G55690 | 39.362 | 94 | 50 | 2 | 1 | 87 | 1 | 94 | 7.32e-13 | 66.6 |
MS.gene043071.t1 | AT5G55690 | 39.362 | 94 | 50 | 2 | 1 | 87 | 1 | 94 | 7.32e-13 | 66.6 |
MS.gene043071.t1 | AT5G27090 | 34.444 | 90 | 58 | 1 | 7 | 95 | 23 | 112 | 4.76e-11 | 60.1 |
MS.gene043071.t1 | AT5G26950 | 29.932 | 147 | 80 | 6 | 24 | 164 | 41 | 170 | 5.20e-11 | 61.2 |
MS.gene043071.t1 | AT5G27944 | 39.726 | 73 | 43 | 1 | 24 | 95 | 41 | 113 | 5.20e-11 | 60.5 |
MS.gene043071.t1 | AT5G27070 | 29.932 | 147 | 80 | 6 | 24 | 164 | 41 | 170 | 5.23e-11 | 61.2 |
Find 58 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | 4.2:-73208685 | MS.gene043071:CDS |
CCCTTTGGTGAGATCAATTA+TGG | 0.234667 | 4.2:-73208368 | MS.gene043071:CDS |
TACCAATGTCCTTCATATTA+TGG | 0.254451 | 4.2:+73208558 | None:intergenic |
ATAATTTCATCATCATTAAT+AGG | 0.285530 | 4.2:+73208446 | None:intergenic |
GTGAGATCAATTATGGAGTT+TGG | 0.309548 | 4.2:-73208361 | MS.gene043071:CDS |
AACAAAGGGTCTATTGAAAA+AGG | 0.314581 | 4.2:-73208918 | MS.gene043071:CDS |
ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | 4.2:-73208838 | MS.gene043071:CDS |
AACATCTAGGAGTGAGGAAA+TGG | 0.347038 | 4.2:-73208498 | MS.gene043071:CDS |
ATCCTTCAAGGTAGTAAATC+AGG | 0.372648 | 4.2:+73208338 | None:intergenic |
TATGCAAAGTCAATTATTGA+TGG | 0.385590 | 4.2:-73208426 | MS.gene043071:CDS |
TCCTCACTCCTAGATGTTGT+TGG | 0.401049 | 4.2:+73208503 | None:intergenic |
GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | 4.2:-73208684 | MS.gene043071:CDS |
GGCCTGATTTACTACCTTGA+AGG | 0.422090 | 4.2:-73208340 | None:intergenic |
GAAGGACATTGGTAGACGTT+TGG | 0.439260 | 4.2:-73208549 | MS.gene043071:CDS |
AGTGAGGAAATGGGAATTGT+GGG | 0.443118 | 4.2:-73208488 | MS.gene043071:CDS |
CTAGATGTTGTTGGAGGTGG+TGG | 0.444811 | 4.2:+73208512 | None:intergenic |
TTGTGGGTCATGGCCATGTT+GGG | 0.452922 | 4.2:-73208472 | MS.gene043071:CDS |
CACAACCATGGCTAGAAGTA+AGG | 0.457305 | 4.2:-73208996 | None:intergenic |
CTCCTAGATGTTGTTGGAGG+TGG | 0.461559 | 4.2:+73208509 | None:intergenic |
CTCATAAGAGCCATACACTA+TGG | 0.467809 | 4.2:+73208856 | None:intergenic |
ATTGTGGGTCATGGCCATGT+TGG | 0.468248 | 4.2:-73208473 | MS.gene043071:CDS |
TCTGATGAAGGCCAAATCTC+AGG | 0.474702 | 4.2:+73208827 | None:intergenic |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.2:-73208417 | MS.gene043071:CDS |
TTGATTTGAGTTATCTTACT+TGG | 0.482489 | 4.2:-73208589 | MS.gene043071:CDS |
CTTGACACAAAGGATTCTGA+AGG | 0.491635 | 4.2:-73208723 | MS.gene043071:CDS |
GTTGATTGACCATAATATGA+AGG | 0.493638 | 4.2:-73208567 | MS.gene043071:CDS |
TGCAGCATCATTGACAATGA+AGG | 0.502295 | 4.2:+73208964 | None:intergenic |
GATGTTGTTGGAGGTGGTGG+TGG | 0.505459 | 4.2:+73208515 | None:intergenic |
TCACTCCTAGATGTTGTTGG+AGG | 0.510768 | 4.2:+73208506 | None:intergenic |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.512375 | 4.2:+73208735 | None:intergenic |
GAGTGAGGAAATGGGAATTG+TGG | 0.516317 | 4.2:-73208489 | MS.gene043071:CDS |
GGACATTGGTAGACGTTTGG+CGG | 0.524285 | 4.2:-73208546 | MS.gene043071:CDS |
GAGATTTGGCCTTCATCAGA+GGG | 0.524738 | 4.2:-73208824 | MS.gene043071:CDS |
ACATCTAGGAGTGAGGAAAT+GGG | 0.532509 | 4.2:-73208497 | MS.gene043071:CDS |
CACCACCTCCAACAACATCT+AGG | 0.540352 | 4.2:-73208511 | MS.gene043071:CDS |
ATGTCTCATTGTCTCAATGA+AGG | 0.542205 | 4.2:-73208641 | MS.gene043071:CDS |
CCATAATTGATCTCACCAAA+GGG | 0.558369 | 4.2:+73208368 | None:intergenic |
GAAGCCTGTGCCATAGTGTA+TGG | 0.560968 | 4.2:-73208866 | MS.gene043071:CDS |
GAAGGCCAAATCTCAGGTTG+AGG | 0.568672 | 4.2:+73208833 | None:intergenic |
TTTAACCTTACTTCTAGCCA+TGG | 0.572129 | 4.2:+73208991 | None:intergenic |
GACCATAATATGAAGGACAT+TGG | 0.575076 | 4.2:-73208560 | MS.gene043071:CDS |
TCCATAATTGATCTCACCAA+AGG | 0.580970 | 4.2:+73208367 | None:intergenic |
GTGCACGAGACAGTGCCCTT+TGG | 0.582311 | 4.2:-73208383 | MS.gene043071:CDS |
AAGAGACTTTCTTGACACAA+AGG | 0.587821 | 4.2:-73208733 | MS.gene043071:CDS |
CATTAATAGGTATCCCAACA+TGG | 0.589301 | 4.2:+73208459 | None:intergenic |
TGAGATTTGGCCTTCATCAG+AGG | 0.593649 | 4.2:-73208825 | MS.gene043071:CDS |
ACAGGCTTCAATGCCACAGA+GGG | 0.601811 | 4.2:+73208880 | None:intergenic |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.2:-73208410 | MS.gene043071:CDS |
GATTTGGCCTTCATCAGAGG+GGG | 0.615187 | 4.2:-73208822 | MS.gene043071:CDS |
GAAATGGGAATTGTGGGTCA+TGG | 0.616732 | 4.2:-73208482 | MS.gene043071:CDS |
TCCAACAACATCTAGGAGTG+AGG | 0.651992 | 4.2:-73208504 | MS.gene043071:CDS |
TCATTGTCAATGATGCTGCA+AGG | 0.652548 | 4.2:-73208961 | MS.gene043071:CDS |
AGAGCCATACACTATGGCAC+AGG | 0.656790 | 4.2:+73208862 | None:intergenic |
ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4.2:-73208414 | MS.gene043071:CDS |
AGATTTGGCCTTCATCAGAG+GGG | 0.672121 | 4.2:-73208823 | MS.gene043071:CDS |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.2:-73208893 | MS.gene043071:CDS |
TGTGCACGACAATATGTCAA+CGG | 0.688304 | 4.2:-73208612 | MS.gene043071:CDS |
CACAGGCTTCAATGCCACAG+AGG | 0.696692 | 4.2:+73208879 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTTCATCATCATTAAT+AGG | + | chr4.2:73208889-73208908 | None:intergenic | 15.0% |
!! | AACATACAAAAAAAGAACAA+AGG | - | chr4.2:73208399-73208418 | MS.gene043071:CDS | 20.0% |
!! | ACATACAAAAAAAGAACAAA+GGG | - | chr4.2:73208400-73208419 | MS.gene043071:CDS | 20.0% |
!! | AGAAACAAAGAAAAGAAAAT+AGG | - | chr4.2:73208647-73208666 | MS.gene043071:CDS | 20.0% |
!! | GAAACAAAGAAAAGAAAATA+GGG | - | chr4.2:73208648-73208667 | MS.gene043071:CDS | 20.0% |
! | TATGCAAAGTCAATTATTGA+TGG | - | chr4.2:73208906-73208925 | MS.gene043071:CDS | 25.0% |
!! | TTGATTTGAGTTATCTTACT+TGG | - | chr4.2:73208743-73208762 | MS.gene043071:CDS | 25.0% |
AACAAAGGGTCTATTGAAAA+AGG | - | chr4.2:73208414-73208433 | MS.gene043071:CDS | 30.0% | |
GTTGATTGACCATAATATGA+AGG | - | chr4.2:73208765-73208784 | MS.gene043071:CDS | 30.0% | |
TACCAATGTCCTTCATATTA+TGG | + | chr4.2:73208777-73208796 | None:intergenic | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.2:73208915-73208934 | MS.gene043071:CDS | 30.0% |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.2:73208599-73208618 | MS.gene043071:CDS | 35.0% | |
ATGTCTCATTGTCTCAATGA+AGG | - | chr4.2:73208691-73208710 | MS.gene043071:CDS | 35.0% | |
CATTAATAGGTATCCCAACA+TGG | + | chr4.2:73208876-73208895 | None:intergenic | 35.0% | |
CCATAATTGATCTCACCAAA+GGG | + | chr4.2:73208967-73208986 | None:intergenic | 35.0% | |
GACCATAATATGAAGGACAT+TGG | - | chr4.2:73208772-73208791 | MS.gene043071:CDS | 35.0% | |
GTGAGATCAATTATGGAGTT+TGG | - | chr4.2:73208971-73208990 | MS.gene043071:CDS | 35.0% | |
TCCATAATTGATCTCACCAA+AGG | + | chr4.2:73208968-73208987 | None:intergenic | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.2:73208600-73208619 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.2:73208918-73208937 | MS.gene043071:CDS | 35.0% |
!! | TGAATTTTGAGAGCACAGAT+TGG | + | chr4.2:73208537-73208556 | None:intergenic | 35.0% |
AACATCTAGGAGTGAGGAAA+TGG | - | chr4.2:73208834-73208853 | MS.gene043071:CDS | 40.0% | |
ACATCTAGGAGTGAGGAAAT+GGG | - | chr4.2:73208835-73208854 | MS.gene043071:CDS | 40.0% | |
AGTGAGGAAATGGGAATTGT+GGG | - | chr4.2:73208844-73208863 | MS.gene043071:CDS | 40.0% | |
CCCTTTGGTGAGATCAATTA+TGG | - | chr4.2:73208964-73208983 | MS.gene043071:CDS | 40.0% | |
CTCATAAGAGCCATACACTA+TGG | + | chr4.2:73208479-73208498 | None:intergenic | 40.0% | |
CTTGACACAAAGGATTCTGA+AGG | - | chr4.2:73208609-73208628 | MS.gene043071:CDS | 40.0% | |
TCATTGTCAATGATGCTGCA+AGG | - | chr4.2:73208371-73208390 | MS.gene043071:CDS | 40.0% | |
TGCAGCATCATTGACAATGA+AGG | + | chr4.2:73208371-73208390 | None:intergenic | 40.0% | |
TGTGCACGACAATATGTCAA+CGG | - | chr4.2:73208720-73208739 | MS.gene043071:CDS | 40.0% | |
ATGAGCCTCAACCTGAGATT+TGG | - | chr4.2:73208494-73208513 | MS.gene043071:CDS | 45.0% | |
GAAATGGGAATTGTGGGTCA+TGG | - | chr4.2:73208850-73208869 | MS.gene043071:CDS | 45.0% | |
GAAGGACATTGGTAGACGTT+TGG | - | chr4.2:73208783-73208802 | MS.gene043071:CDS | 45.0% | |
GAGTGAGGAAATGGGAATTG+TGG | - | chr4.2:73208843-73208862 | MS.gene043071:CDS | 45.0% | |
TCACTCCTAGATGTTGTTGG+AGG | + | chr4.2:73208829-73208848 | None:intergenic | 45.0% | |
TCCAACAACATCTAGGAGTG+AGG | - | chr4.2:73208828-73208847 | MS.gene043071:CDS | 45.0% | |
TCCTCACTCCTAGATGTTGT+TGG | + | chr4.2:73208832-73208851 | None:intergenic | 45.0% | |
TCTGATGAAGGCCAAATCTC+AGG | + | chr4.2:73208508-73208527 | None:intergenic | 45.0% | |
! | AGATTTGGCCTTCATCAGAG+GGG | - | chr4.2:73208509-73208528 | MS.gene043071:CDS | 45.0% |
! | GAGATTTGGCCTTCATCAGA+GGG | - | chr4.2:73208508-73208527 | MS.gene043071:CDS | 45.0% |
! | TGAGATTTGGCCTTCATCAG+AGG | - | chr4.2:73208507-73208526 | MS.gene043071:CDS | 45.0% |
ACAGGCTTCAATGCCACAGA+GGG | + | chr4.2:73208455-73208474 | None:intergenic | 50.0% | |
AGAGCCATACACTATGGCAC+AGG | + | chr4.2:73208473-73208492 | None:intergenic | 50.0% | |
ATTGTGGGTCATGGCCATGT+TGG | - | chr4.2:73208859-73208878 | MS.gene043071:CDS | 50.0% | |
CACCACCTCCAACAACATCT+AGG | - | chr4.2:73208821-73208840 | MS.gene043071:CDS | 50.0% | |
CTAGATGTTGTTGGAGGTGG+TGG | + | chr4.2:73208823-73208842 | None:intergenic | 50.0% | |
CTCCTAGATGTTGTTGGAGG+TGG | + | chr4.2:73208826-73208845 | None:intergenic | 50.0% | |
GAAGCCTGTGCCATAGTGTA+TGG | - | chr4.2:73208466-73208485 | MS.gene043071:CDS | 50.0% | |
GGACATTGGTAGACGTTTGG+CGG | - | chr4.2:73208786-73208805 | MS.gene043071:CDS | 50.0% | |
TTGTGGGTCATGGCCATGTT+GGG | - | chr4.2:73208860-73208879 | MS.gene043071:CDS | 50.0% | |
! | GAAGGCCAAATCTCAGGTTG+AGG | + | chr4.2:73208502-73208521 | None:intergenic | 50.0% |
! | GATTTGGCCTTCATCAGAGG+GGG | - | chr4.2:73208510-73208529 | MS.gene043071:CDS | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.2:73208922-73208941 | MS.gene043071:CDS | 50.0% |
CACAGGCTTCAATGCCACAG+AGG | + | chr4.2:73208456-73208475 | None:intergenic | 55.0% | |
GATTGGACCCCCTCTGATGA+AGG | + | chr4.2:73208520-73208539 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+TGG | - | chr4.2:73208439-73208458 | MS.gene043071:CDS | 55.0% | |
! | GATGTTGTTGGAGGTGGTGG+TGG | + | chr4.2:73208820-73208839 | None:intergenic | 55.0% |
GTGCACGAGACAGTGCCCTT+TGG | - | chr4.2:73208949-73208968 | MS.gene043071:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 73208343 | 73209011 | 73208343 | ID=MS.gene043071 |
chr4.2 | mRNA | 73208343 | 73209011 | 73208343 | ID=MS.gene043071.t1;Parent=MS.gene043071 |
chr4.2 | exon | 73208343 | 73209011 | 73208343 | ID=MS.gene043071.t1.exon1;Parent=MS.gene043071.t1 |
chr4.2 | CDS | 73208343 | 73209011 | 73208343 | ID=cds.MS.gene043071.t1;Parent=MS.gene043071.t1 |
Gene Sequence |
Protein sequence |