Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043073.t1 | XP_003605494.2 | 69.3 | 244 | 40 | 2 | 1 | 222 | 1 | 231 | 1.30E-84 | 322.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043073.t1 | Q9FJK3 | 48.9 | 182 | 92 | 1 | 1 | 182 | 1 | 181 | 2.4e-39 | 163.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043073.t1 | G7JN54 | 69.3 | 244 | 40 | 2 | 1 | 222 | 1 | 231 | 9.1e-85 | 322.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene043073.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043073.t1 | MTR_4g031910 | 72.926 | 229 | 55 | 1 | 1 | 222 | 1 | 229 | 4.76e-113 | 323 |
MS.gene043073.t1 | MTR_4g032290 | 71.311 | 244 | 35 | 2 | 1 | 222 | 1 | 231 | 9.22e-113 | 322 |
MS.gene043073.t1 | MTR_4g032620 | 58.874 | 231 | 86 | 1 | 1 | 222 | 1 | 231 | 5.50e-96 | 280 |
MS.gene043073.t1 | MTR_8g036130 | 58.065 | 248 | 77 | 4 | 1 | 222 | 1 | 247 | 3.97e-91 | 268 |
MS.gene043073.t1 | MTR_4g032260 | 81.132 | 159 | 30 | 0 | 1 | 159 | 1 | 159 | 9.86e-84 | 246 |
MS.gene043073.t1 | MTR_3g065100 | 47.718 | 241 | 101 | 4 | 1 | 219 | 1 | 238 | 6.18e-63 | 196 |
MS.gene043073.t1 | MTR_3g466980 | 46.119 | 219 | 102 | 4 | 1 | 214 | 1 | 208 | 9.67e-61 | 190 |
MS.gene043073.t1 | MTR_2g035610 | 72.131 | 122 | 34 | 0 | 1 | 122 | 1 | 122 | 5.87e-51 | 161 |
MS.gene043073.t1 | MTR_4g032270 | 77.083 | 96 | 14 | 1 | 135 | 222 | 36 | 131 | 2.00e-46 | 150 |
MS.gene043073.t1 | MTR_3g466830 | 47.682 | 151 | 78 | 1 | 3 | 153 | 2 | 151 | 1.46e-45 | 149 |
MS.gene043073.t1 | MTR_5g075380 | 45.161 | 155 | 84 | 1 | 1 | 155 | 1 | 154 | 7.51e-45 | 147 |
MS.gene043073.t1 | MTR_4g063790 | 42.208 | 154 | 89 | 0 | 1 | 154 | 1 | 154 | 2.20e-42 | 141 |
MS.gene043073.t1 | MTR_5g047580 | 44.872 | 156 | 84 | 2 | 1 | 156 | 1 | 154 | 7.85e-41 | 137 |
MS.gene043073.t1 | MTR_3g031100 | 41.139 | 158 | 93 | 0 | 1 | 158 | 1 | 158 | 1.71e-40 | 139 |
MS.gene043073.t1 | MTR_3g467080 | 40.385 | 156 | 93 | 0 | 1 | 156 | 1 | 156 | 2.75e-40 | 135 |
MS.gene043073.t1 | MTR_2g016210 | 39.548 | 177 | 106 | 1 | 1 | 176 | 1 | 177 | 7.19e-40 | 137 |
MS.gene043073.t1 | MTR_3g466890 | 42.763 | 152 | 86 | 1 | 3 | 154 | 2 | 152 | 1.35e-38 | 131 |
MS.gene043073.t1 | MTR_7g011950 | 45.283 | 159 | 85 | 2 | 1 | 159 | 1 | 157 | 4.06e-37 | 127 |
MS.gene043073.t1 | MTR_1g077390 | 40.881 | 159 | 92 | 2 | 1 | 159 | 1 | 157 | 3.22e-36 | 125 |
MS.gene043073.t1 | MTR_4g028720 | 44.654 | 159 | 86 | 2 | 1 | 159 | 1 | 157 | 5.48e-36 | 124 |
MS.gene043073.t1 | MTR_1g077320 | 44.654 | 159 | 86 | 2 | 1 | 159 | 1 | 157 | 2.65e-35 | 123 |
MS.gene043073.t1 | MTR_1g090783 | 40.260 | 154 | 90 | 2 | 3 | 156 | 2 | 153 | 1.83e-34 | 120 |
MS.gene043073.t1 | MTR_1g090697 | 40.667 | 150 | 87 | 2 | 1 | 150 | 1 | 148 | 1.70e-33 | 118 |
MS.gene043073.t1 | MTR_1g077300 | 43.396 | 159 | 86 | 2 | 1 | 159 | 1 | 155 | 2.37e-33 | 117 |
MS.gene043073.t1 | MTR_1g084950 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 2.60e-33 | 117 |
MS.gene043073.t1 | MTR_3g465410 | 42.063 | 126 | 73 | 0 | 29 | 154 | 1 | 126 | 3.93e-33 | 117 |
MS.gene043073.t1 | MTR_1g090710 | 37.662 | 154 | 95 | 1 | 1 | 154 | 1 | 153 | 2.43e-32 | 115 |
MS.gene043073.t1 | MTR_4g028800 | 75.714 | 70 | 15 | 1 | 1 | 70 | 1 | 68 | 1.44e-31 | 110 |
MS.gene043073.t1 | MTR_3g031240 | 34.177 | 158 | 100 | 2 | 1 | 156 | 1 | 156 | 2.26e-29 | 108 |
MS.gene043073.t1 | MTR_7g055800 | 50.427 | 117 | 30 | 2 | 1 | 117 | 1 | 89 | 7.56e-29 | 104 |
MS.gene043073.t1 | MTR_3g466900 | 39.837 | 123 | 73 | 1 | 32 | 154 | 2 | 123 | 1.35e-28 | 105 |
MS.gene043073.t1 | MTR_4g019670 | 40.945 | 127 | 75 | 0 | 3 | 129 | 6 | 132 | 4.76e-26 | 105 |
MS.gene043073.t1 | MTR_3g466930 | 37.398 | 123 | 76 | 1 | 32 | 154 | 2 | 123 | 1.47e-25 | 97.1 |
MS.gene043073.t1 | MTR_2g035580 | 35.669 | 157 | 100 | 1 | 1 | 157 | 1 | 156 | 3.15e-25 | 97.1 |
MS.gene043073.t1 | MTR_7g106510 | 36.306 | 157 | 84 | 2 | 3 | 159 | 6 | 146 | 9.60e-25 | 101 |
MS.gene043073.t1 | MTR_7g055790 | 51.351 | 111 | 36 | 1 | 1 | 111 | 59 | 151 | 1.46e-24 | 95.1 |
MS.gene043073.t1 | MTR_7g055940 | 49.057 | 106 | 26 | 2 | 1 | 106 | 1 | 78 | 1.48e-23 | 90.1 |
MS.gene043073.t1 | MTR_3g093900 | 32.394 | 142 | 96 | 0 | 3 | 144 | 6 | 147 | 5.78e-23 | 96.7 |
MS.gene043073.t1 | MTR_5g047560 | 35.256 | 156 | 83 | 3 | 1 | 156 | 1 | 138 | 7.05e-23 | 90.5 |
MS.gene043073.t1 | MTR_2g035590 | 58.025 | 81 | 34 | 0 | 74 | 154 | 1 | 81 | 1.38e-18 | 77.8 |
MS.gene043073.t1 | MTR_6g005450 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 2.45e-13 | 68.2 |
MS.gene043073.t1 | MTR_6g018920 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 2.79e-13 | 68.2 |
MS.gene043073.t1 | MTR_1g114730 | 32.743 | 113 | 69 | 3 | 1 | 107 | 1 | 112 | 3.89e-13 | 67.8 |
MS.gene043073.t1 | MTR_4g084780 | 38.739 | 111 | 52 | 2 | 74 | 168 | 1 | 111 | 1.33e-12 | 63.5 |
MS.gene043073.t1 | MTR_6g005440 | 36.283 | 113 | 65 | 4 | 1 | 107 | 1 | 112 | 1.62e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043073.t1 | AT5G48670 | 55.195 | 154 | 68 | 1 | 1 | 154 | 1 | 153 | 4.47e-46 | 155 |
MS.gene043073.t1 | AT1G65300 | 40.331 | 181 | 99 | 2 | 3 | 175 | 2 | 181 | 1.43e-40 | 140 |
MS.gene043073.t1 | AT1G65330 | 42.262 | 168 | 88 | 2 | 3 | 162 | 2 | 168 | 5.01e-39 | 136 |
MS.gene043073.t1 | AT5G26630 | 41.463 | 205 | 109 | 3 | 1 | 195 | 1 | 204 | 5.75e-38 | 131 |
MS.gene043073.t1 | AT5G26650 | 41.071 | 168 | 88 | 2 | 5 | 162 | 3 | 169 | 5.41e-36 | 130 |
MS.gene043073.t1 | AT5G27960 | 41.071 | 168 | 88 | 3 | 5 | 162 | 3 | 169 | 1.54e-35 | 128 |
MS.gene043073.t1 | AT1G31630 | 36.310 | 168 | 97 | 3 | 3 | 162 | 2 | 167 | 1.01e-34 | 126 |
MS.gene043073.t1 | AT1G31640 | 39.073 | 151 | 90 | 2 | 3 | 153 | 2 | 150 | 1.17e-32 | 123 |
MS.gene043073.t1 | AT3G05860 | 38.608 | 158 | 96 | 1 | 1 | 158 | 1 | 157 | 1.27e-32 | 117 |
MS.gene043073.t1 | AT3G05860 | 38.608 | 158 | 96 | 1 | 1 | 158 | 1 | 157 | 3.57e-32 | 117 |
MS.gene043073.t1 | AT3G05860 | 38.608 | 158 | 96 | 1 | 1 | 158 | 1 | 157 | 3.97e-32 | 117 |
MS.gene043073.t1 | AT5G27810 | 56.989 | 93 | 40 | 0 | 29 | 121 | 1 | 93 | 7.79e-32 | 112 |
MS.gene043073.t1 | AT2G28700 | 32.589 | 224 | 120 | 4 | 1 | 221 | 1 | 196 | 4.13e-29 | 111 |
MS.gene043073.t1 | AT1G22590 | 32.099 | 162 | 106 | 1 | 1 | 162 | 1 | 158 | 1.03e-25 | 98.6 |
MS.gene043073.t1 | AT5G26580 | 36.364 | 154 | 83 | 2 | 1 | 154 | 1 | 139 | 4.14e-25 | 100 |
MS.gene043073.t1 | AT5G06500 | 35.032 | 157 | 100 | 2 | 1 | 157 | 1 | 155 | 8.35e-22 | 90.1 |
MS.gene043073.t1 | AT2G40210 | 37.984 | 129 | 79 | 1 | 1 | 129 | 1 | 128 | 1.18e-18 | 83.6 |
MS.gene043073.t1 | AT5G58890 | 37.795 | 127 | 68 | 5 | 6 | 123 | 6 | 130 | 5.99e-16 | 75.5 |
MS.gene043073.t1 | AT5G55690 | 44.872 | 78 | 36 | 2 | 1 | 71 | 1 | 78 | 2.61e-14 | 70.5 |
MS.gene043073.t1 | AT5G55690 | 44.872 | 78 | 36 | 2 | 1 | 71 | 1 | 78 | 2.61e-14 | 70.5 |
MS.gene043073.t1 | AT2G15660 | 30.000 | 140 | 79 | 3 | 11 | 150 | 18 | 138 | 6.61e-14 | 68.9 |
MS.gene043073.t1 | AT5G27944 | 32.727 | 110 | 62 | 3 | 24 | 131 | 41 | 140 | 6.46e-11 | 60.5 |
Find 60 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTTGGTGAGATCAATTC+TGG | 0.238779 | 4.2:-73183566 | MS.gene043073:CDS |
GAGCGAAGAAATGGCAATTA+TGG | 0.251384 | 4.2:-73183687 | MS.gene043073:CDS |
TACCAATGTCCTTCAAATTA+TGG | 0.254451 | 4.2:+73183756 | None:intergenic |
TGAAACAAAGAAAAGATAAT+AGG | 0.275750 | 4.2:-73183883 | MS.gene043073:CDS |
ATCCTTCAAGGTAGTAAATC+AGG | 0.301540 | 4.2:+73183536 | None:intergenic |
ATAATGTCATCATTATTAAT+AGG | 0.321721 | 4.2:+73183644 | None:intergenic |
TATTAATAGGTATTCCAATA+TGG | 0.324054 | 4.2:+73183657 | None:intergenic |
AACGAAGGGTCTATTGAAAA+AGG | 0.335070 | 4.2:-73184116 | MS.gene043073:CDS |
ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | 4.2:-73184036 | MS.gene043073:CDS |
ATCTCAGGTTGAGGCTCATA+AGG | 0.373927 | 4.2:+73184040 | None:intergenic |
GCCCTGATTTACTACCTTGA+AGG | 0.388674 | 4.2:-73183538 | None:intergenic |
TATGCAAAGTCAATTATTGA+TGG | 0.408286 | 4.2:-73183624 | MS.gene043073:CDS |
GAAGGACATTGGTAGACGTT+TGG | 0.410243 | 4.2:-73183747 | MS.gene043073:CDS |
GAAACAAAGAAAAGATAATA+GGG | 0.419680 | 4.2:-73183882 | MS.gene043073:CDS |
ATTATGGGTCATGGCCATAT+TGG | 0.424355 | 4.2:-73183671 | MS.gene043073:CDS |
AGCGAAGAAATGGCAATTAT+GGG | 0.425600 | 4.2:-73183686 | MS.gene043073:CDS |
AGCATCTAGGAGCGAAGAAA+TGG | 0.428793 | 4.2:-73183696 | MS.gene043073:CDS |
GTTGATTGACCATAATTTGA+AGG | 0.445081 | 4.2:-73183765 | MS.gene043073:CDS |
CTAGATGCTGCTGGAGGTGG+TGG | 0.445358 | 4.2:+73183710 | None:intergenic |
CACAACCATGGCTAGAAGTA+AGG | 0.457305 | 4.2:-73184194 | None:intergenic |
TCTGGTGAAGGCCAAATCTC+AGG | 0.467267 | 4.2:+73184025 | None:intergenic |
CTCATAAGGGCCATACACTA+TGG | 0.468858 | 4.2:+73184054 | None:intergenic |
CTTGACACAAAGGGTTCTGA+AGG | 0.478789 | 4.2:-73183921 | MS.gene043073:CDS |
CTCCTAGATGCTGCTGGAGG+TGG | 0.480058 | 4.2:+73183707 | None:intergenic |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.2:-73183615 | MS.gene043073:CDS |
TTGATTTGAGTTATCTTACT+TGG | 0.482489 | 4.2:-73183787 | MS.gene043073:CDS |
TCTTCGCTCCTAGATGCTGC+TGG | 0.487238 | 4.2:+73183701 | None:intergenic |
ATGCAAGAGACAGTGCCCTT+TGG | 0.509131 | 4.2:-73183581 | MS.gene043073:CDS |
AGAGACTTTCTTGACACAAA+GGG | 0.517022 | 4.2:-73183930 | MS.gene043073:CDS |
GACCATAATTTGAAGGACAT+TGG | 0.517963 | 4.2:-73183758 | MS.gene043073:CDS |
CACCACCTCCAGCAGCATCT+AGG | 0.522994 | 4.2:-73183709 | MS.gene043073:CDS |
GGACATTGGTAGACGTTTGG+CGG | 0.524285 | 4.2:-73183744 | MS.gene043073:CDS |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | 4.2:+73183933 | None:intergenic |
TTTAACCTTACTTCTAGCCA+TGG | 0.533701 | 4.2:+73184189 | None:intergenic |
TCTCAGGTTGAGGCTCATAA+GGG | 0.533923 | 4.2:+73184041 | None:intergenic |
ACTTGCCTTCATTGTCAATG+AGG | 0.536135 | 4.2:-73184167 | MS.gene043073:CDS |
ATGTCTCATTGTCTCAATGA+AGG | 0.542205 | 4.2:-73183839 | MS.gene043073:CDS |
GAAATGGCAATTATGGGTCA+TGG | 0.549964 | 4.2:-73183680 | MS.gene043073:CDS |
TCATTGTCAATGAGGCTACA+AGG | 0.551605 | 4.2:-73184159 | MS.gene043073:CDS |
TGTAGCCTCATTGACAATGA+AGG | 0.553670 | 4.2:+73184162 | None:intergenic |
CCAGAATTGATCTCACCAAA+GGG | 0.554343 | 4.2:+73183566 | None:intergenic |
GAAGCCTGTGCCATAGTGTA+TGG | 0.559714 | 4.2:-73184064 | MS.gene043073:CDS |
GAGATTTGGCCTTCACCAGA+GGG | 0.565461 | 4.2:-73184022 | MS.gene043073:CDS |
GATTTGGCCTTCACCAGAGG+GGG | 0.573799 | 4.2:-73184020 | MS.gene043073:CDS |
TCCTTCAAGGTAGTAAATCA+GGG | 0.588454 | 4.2:+73183537 | None:intergenic |
TCCAGAATTGATCTCACCAA+AGG | 0.590517 | 4.2:+73183565 | None:intergenic |
GAAGGCCAAATCTCAGGTTG+AGG | 0.598100 | 4.2:+73184031 | None:intergenic |
ACAGGCTTCAATGCCACAGA+GGG | 0.601811 | 4.2:+73184078 | None:intergenic |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.2:-73183608 | MS.gene043073:CDS |
AAGAGACTTTCTTGACACAA+AGG | 0.607804 | 4.2:-73183931 | MS.gene043073:CDS |
TGAGATTTGGCCTTCACCAG+AGG | 0.614269 | 4.2:-73184023 | MS.gene043073:CDS |
ATCATACAAGAAAAGAACGA+AGG | 0.618898 | 4.2:-73184131 | MS.gene043073:CDS |
TCATACAAGAAAAGAACGAA+GGG | 0.620354 | 4.2:-73184130 | MS.gene043073:CDS |
AGGGCCATACACTATGGCAC+AGG | 0.641363 | 4.2:+73184060 | None:intergenic |
TGTTGACGACAATATGTCAA+CGG | 0.648930 | 4.2:-73183810 | MS.gene043073:CDS |
AGATTTGGCCTTCACCAGAG+GGG | 0.650878 | 4.2:-73184021 | MS.gene043073:CDS |
ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4.2:-73183612 | MS.gene043073:CDS |
TCGCTCCTAGATGCTGCTGG+AGG | 0.676090 | 4.2:+73183704 | None:intergenic |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.2:-73184091 | MS.gene043073:CDS |
CACAGGCTTCAATGCCACAG+AGG | 0.696692 | 4.2:+73184077 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATGTCATCATTATTAAT+AGG | + | chr4.2:73184087-73184106 | None:intergenic | 15.0% |
!! | GAAACAAAGAAAAGATAATA+GGG | - | chr4.2:73183846-73183865 | MS.gene043073:CDS | 20.0% |
!! | TATTAATAGGTATTCCAATA+TGG | + | chr4.2:73184074-73184093 | None:intergenic | 20.0% |
!! | TGAAACAAAGAAAAGATAAT+AGG | - | chr4.2:73183845-73183864 | MS.gene043073:CDS | 20.0% |
! | TATGCAAAGTCAATTATTGA+TGG | - | chr4.2:73184104-73184123 | MS.gene043073:CDS | 25.0% |
!! | TTGATTTGAGTTATCTTACT+TGG | - | chr4.2:73183941-73183960 | MS.gene043073:CDS | 25.0% |
ATCATACAAGAAAAGAACGA+AGG | - | chr4.2:73183597-73183616 | MS.gene043073:CDS | 30.0% | |
GTTGATTGACCATAATTTGA+AGG | - | chr4.2:73183963-73183982 | MS.gene043073:CDS | 30.0% | |
TACCAATGTCCTTCAAATTA+TGG | + | chr4.2:73183975-73183994 | None:intergenic | 30.0% | |
TCATACAAGAAAAGAACGAA+GGG | - | chr4.2:73183598-73183617 | MS.gene043073:CDS | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.2:73184113-73184132 | MS.gene043073:CDS | 30.0% |
AACGAAGGGTCTATTGAAAA+AGG | - | chr4.2:73183612-73183631 | MS.gene043073:CDS | 35.0% | |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.2:73183797-73183816 | MS.gene043073:CDS | 35.0% | |
AGAGACTTTCTTGACACAAA+GGG | - | chr4.2:73183798-73183817 | MS.gene043073:CDS | 35.0% | |
AGCGAAGAAATGGCAATTAT+GGG | - | chr4.2:73184042-73184061 | MS.gene043073:CDS | 35.0% | |
ATGTCTCATTGTCTCAATGA+AGG | - | chr4.2:73183889-73183908 | MS.gene043073:CDS | 35.0% | |
GACCATAATTTGAAGGACAT+TGG | - | chr4.2:73183970-73183989 | MS.gene043073:CDS | 35.0% | |
TGTTGACGACAATATGTCAA+CGG | - | chr4.2:73183918-73183937 | MS.gene043073:CDS | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.2:73183798-73183817 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.2:73184116-73184135 | MS.gene043073:CDS | 35.0% |
!! | TGAATTTTGAGAGCACAGAT+TGG | + | chr4.2:73183735-73183754 | None:intergenic | 35.0% |
ACTTGCCTTCATTGTCAATG+AGG | - | chr4.2:73183561-73183580 | MS.gene043073:CDS | 40.0% | |
ATTATGGGTCATGGCCATAT+TGG | - | chr4.2:73184057-73184076 | MS.gene043073:CDS | 40.0% | |
CCAGAATTGATCTCACCAAA+GGG | + | chr4.2:73184165-73184184 | None:intergenic | 40.0% | |
GAAATGGCAATTATGGGTCA+TGG | - | chr4.2:73184048-73184067 | MS.gene043073:CDS | 40.0% | |
GAGCGAAGAAATGGCAATTA+TGG | - | chr4.2:73184041-73184060 | MS.gene043073:CDS | 40.0% | |
TCATTGTCAATGAGGCTACA+AGG | - | chr4.2:73183569-73183588 | MS.gene043073:CDS | 40.0% | |
TCCAGAATTGATCTCACCAA+AGG | + | chr4.2:73184166-73184185 | None:intergenic | 40.0% | |
TGTAGCCTCATTGACAATGA+AGG | + | chr4.2:73183569-73183588 | None:intergenic | 40.0% | |
AGCATCTAGGAGCGAAGAAA+TGG | - | chr4.2:73184032-73184051 | MS.gene043073:CDS | 45.0% | |
ATGAGCCTCAACCTGAGATT+TGG | - | chr4.2:73183692-73183711 | MS.gene043073:CDS | 45.0% | |
CCCTTTGGTGAGATCAATTC+TGG | - | chr4.2:73184162-73184181 | MS.gene043073:CDS | 45.0% | |
CTCATAAGGGCCATACACTA+TGG | + | chr4.2:73183677-73183696 | None:intergenic | 45.0% | |
GAAGGACATTGGTAGACGTT+TGG | - | chr4.2:73183981-73184000 | MS.gene043073:CDS | 45.0% | |
! | CTTGACACAAAGGGTTCTGA+AGG | - | chr4.2:73183807-73183826 | MS.gene043073:CDS | 45.0% |
!! | ATCTCAGGTTGAGGCTCATA+AGG | + | chr4.2:73183691-73183710 | None:intergenic | 45.0% |
!! | TCTCAGGTTGAGGCTCATAA+GGG | + | chr4.2:73183690-73183709 | None:intergenic | 45.0% |
ACAGGCTTCAATGCCACAGA+GGG | + | chr4.2:73183653-73183672 | None:intergenic | 50.0% | |
ATGCAAGAGACAGTGCCCTT+TGG | - | chr4.2:73184147-73184166 | MS.gene043073:CDS | 50.0% | |
GAAGCCTGTGCCATAGTGTA+TGG | - | chr4.2:73183664-73183683 | MS.gene043073:CDS | 50.0% | |
GGACATTGGTAGACGTTTGG+CGG | - | chr4.2:73183984-73184003 | MS.gene043073:CDS | 50.0% | |
TCTGGTGAAGGCCAAATCTC+AGG | + | chr4.2:73183706-73183725 | None:intergenic | 50.0% | |
! | AGATTTGGCCTTCACCAGAG+GGG | - | chr4.2:73183707-73183726 | MS.gene043073:CDS | 50.0% |
! | GAAGGCCAAATCTCAGGTTG+AGG | + | chr4.2:73183700-73183719 | None:intergenic | 50.0% |
! | GAGATTTGGCCTTCACCAGA+GGG | - | chr4.2:73183706-73183725 | MS.gene043073:CDS | 50.0% |
! | TGAGATTTGGCCTTCACCAG+AGG | - | chr4.2:73183705-73183724 | MS.gene043073:CDS | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.2:73184120-73184139 | MS.gene043073:CDS | 50.0% |
AGGGCCATACACTATGGCAC+AGG | + | chr4.2:73183671-73183690 | None:intergenic | 55.0% | |
CACAGGCTTCAATGCCACAG+AGG | + | chr4.2:73183654-73183673 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+TGG | - | chr4.2:73183637-73183656 | MS.gene043073:CDS | 55.0% | |
TCTTCGCTCCTAGATGCTGC+TGG | + | chr4.2:73184030-73184049 | None:intergenic | 55.0% | |
! | GATTTGGCCTTCACCAGAGG+GGG | - | chr4.2:73183708-73183727 | MS.gene043073:CDS | 55.0% |
AGCACAGATTGGACCCCCTC+TGG | + | chr4.2:73183724-73183743 | None:intergenic | 60.0% | |
CACCACCTCCAGCAGCATCT+AGG | - | chr4.2:73184019-73184038 | MS.gene043073:CDS | 60.0% | |
CTAGATGCTGCTGGAGGTGG+TGG | + | chr4.2:73184021-73184040 | None:intergenic | 60.0% | |
CTCCTAGATGCTGCTGGAGG+TGG | + | chr4.2:73184024-73184043 | None:intergenic | 60.0% | |
GATTGGACCCCCTCTGGTGA+AGG | + | chr4.2:73183718-73183737 | None:intergenic | 60.0% | |
TCGCTCCTAGATGCTGCTGG+AGG | + | chr4.2:73184027-73184046 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 73183541 | 73184209 | 73183541 | ID=MS.gene043073 |
chr4.2 | mRNA | 73183541 | 73184209 | 73183541 | ID=MS.gene043073.t1;Parent=MS.gene043073 |
chr4.2 | exon | 73183541 | 73184209 | 73183541 | ID=MS.gene043073.t1.exon1;Parent=MS.gene043073.t1 |
chr4.2 | CDS | 73183541 | 73184209 | 73183541 | ID=cds.MS.gene043073.t1;Parent=MS.gene043073.t1 |
Gene Sequence |
Protein sequence |