Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043074.t1 | XP_003605494.2 | 69.3 | 244 | 40 | 2 | 1 | 222 | 1 | 231 | 5.00E-84 | 320.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043074.t1 | Q9FJK3 | 47.3 | 182 | 95 | 1 | 1 | 182 | 1 | 181 | 1.1e-39 | 164.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043074.t1 | G7JN54 | 69.3 | 244 | 40 | 2 | 1 | 222 | 1 | 231 | 3.6e-84 | 320.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene043074.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043074.t1 | MTR_4g031910 | 71.795 | 234 | 49 | 2 | 1 | 222 | 1 | 229 | 1.97e-111 | 319 |
MS.gene043074.t1 | MTR_4g032290 | 69.262 | 244 | 40 | 2 | 1 | 222 | 1 | 231 | 1.12e-106 | 307 |
MS.gene043074.t1 | MTR_4g032620 | 57.576 | 231 | 89 | 1 | 1 | 222 | 1 | 231 | 2.66e-96 | 281 |
MS.gene043074.t1 | MTR_8g036130 | 58.300 | 247 | 78 | 4 | 1 | 222 | 1 | 247 | 6.86e-92 | 270 |
MS.gene043074.t1 | MTR_4g032260 | 79.618 | 157 | 32 | 0 | 1 | 157 | 1 | 157 | 2.65e-80 | 238 |
MS.gene043074.t1 | MTR_3g065100 | 48.548 | 241 | 99 | 4 | 1 | 219 | 1 | 238 | 1.89e-65 | 202 |
MS.gene043074.t1 | MTR_3g466980 | 46.330 | 218 | 103 | 3 | 1 | 214 | 1 | 208 | 4.18e-63 | 196 |
MS.gene043074.t1 | MTR_2g035610 | 72.951 | 122 | 33 | 0 | 1 | 122 | 1 | 122 | 1.85e-52 | 166 |
MS.gene043074.t1 | MTR_4g032270 | 76.042 | 96 | 15 | 1 | 135 | 222 | 36 | 131 | 5.22e-45 | 147 |
MS.gene043074.t1 | MTR_3g466830 | 48.649 | 148 | 75 | 1 | 3 | 150 | 2 | 148 | 1.38e-44 | 147 |
MS.gene043074.t1 | MTR_4g063790 | 44.156 | 154 | 86 | 0 | 1 | 154 | 1 | 154 | 9.09e-44 | 145 |
MS.gene043074.t1 | MTR_5g075380 | 46.358 | 151 | 80 | 1 | 1 | 151 | 1 | 150 | 1.06e-43 | 144 |
MS.gene043074.t1 | MTR_3g467080 | 41.667 | 156 | 91 | 0 | 1 | 156 | 1 | 156 | 1.00e-41 | 139 |
MS.gene043074.t1 | MTR_5g047580 | 44.231 | 156 | 85 | 2 | 1 | 156 | 1 | 154 | 1.77e-40 | 136 |
MS.gene043074.t1 | MTR_3g031100 | 33.929 | 224 | 136 | 4 | 1 | 219 | 1 | 217 | 6.12e-40 | 137 |
MS.gene043074.t1 | MTR_3g466890 | 45.270 | 148 | 80 | 1 | 3 | 150 | 2 | 148 | 9.36e-40 | 134 |
MS.gene043074.t1 | MTR_2g016210 | 38.418 | 177 | 108 | 1 | 1 | 176 | 1 | 177 | 8.36e-39 | 134 |
MS.gene043074.t1 | MTR_1g077390 | 41.026 | 156 | 90 | 2 | 1 | 156 | 1 | 154 | 1.74e-37 | 129 |
MS.gene043074.t1 | MTR_7g011950 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 3.53e-35 | 122 |
MS.gene043074.t1 | MTR_1g090783 | 40.816 | 147 | 85 | 2 | 3 | 149 | 2 | 146 | 1.23e-34 | 121 |
MS.gene043074.t1 | MTR_1g077320 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 3.62e-34 | 120 |
MS.gene043074.t1 | MTR_3g465410 | 45.082 | 122 | 67 | 0 | 29 | 150 | 1 | 122 | 9.37e-34 | 119 |
MS.gene043074.t1 | MTR_1g090710 | 41.176 | 153 | 78 | 3 | 1 | 153 | 1 | 141 | 1.76e-33 | 118 |
MS.gene043074.t1 | MTR_4g028720 | 42.308 | 156 | 88 | 2 | 1 | 156 | 1 | 154 | 1.98e-33 | 118 |
MS.gene043074.t1 | MTR_1g090697 | 40.000 | 150 | 88 | 2 | 1 | 150 | 1 | 148 | 2.49e-33 | 118 |
MS.gene043074.t1 | MTR_1g077300 | 42.949 | 156 | 85 | 2 | 1 | 156 | 1 | 152 | 1.54e-32 | 116 |
MS.gene043074.t1 | MTR_4g028800 | 77.143 | 70 | 14 | 1 | 1 | 70 | 1 | 68 | 1.67e-32 | 113 |
MS.gene043074.t1 | MTR_1g084950 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 3.29e-32 | 115 |
MS.gene043074.t1 | MTR_7g055800 | 52.137 | 117 | 28 | 2 | 1 | 117 | 1 | 89 | 1.48e-30 | 108 |
MS.gene043074.t1 | MTR_3g031240 | 34.810 | 158 | 99 | 2 | 1 | 156 | 1 | 156 | 5.19e-30 | 110 |
MS.gene043074.t1 | MTR_3g466900 | 39.837 | 123 | 73 | 1 | 32 | 154 | 2 | 123 | 3.85e-28 | 103 |
MS.gene043074.t1 | MTR_7g055790 | 54.054 | 111 | 33 | 1 | 1 | 111 | 59 | 151 | 2.07e-27 | 102 |
MS.gene043074.t1 | MTR_3g466930 | 38.655 | 119 | 72 | 1 | 32 | 150 | 2 | 119 | 1.04e-25 | 97.8 |
MS.gene043074.t1 | MTR_7g055940 | 50.943 | 106 | 24 | 2 | 1 | 106 | 1 | 78 | 3.48e-25 | 94.7 |
MS.gene043074.t1 | MTR_4g019670 | 40.000 | 125 | 75 | 0 | 3 | 127 | 6 | 130 | 1.48e-24 | 101 |
MS.gene043074.t1 | MTR_7g106510 | 38.583 | 127 | 78 | 0 | 3 | 129 | 6 | 132 | 1.65e-24 | 101 |
MS.gene043074.t1 | MTR_2g035580 | 35.669 | 157 | 100 | 1 | 1 | 157 | 1 | 156 | 2.18e-24 | 95.1 |
MS.gene043074.t1 | MTR_3g093900 | 31.658 | 199 | 131 | 4 | 3 | 196 | 6 | 204 | 4.49e-22 | 94.4 |
MS.gene043074.t1 | MTR_5g047560 | 34.615 | 156 | 84 | 3 | 1 | 156 | 1 | 138 | 5.09e-22 | 88.2 |
MS.gene043074.t1 | MTR_2g035590 | 60.494 | 81 | 32 | 0 | 74 | 154 | 1 | 81 | 6.82e-21 | 84.3 |
MS.gene043074.t1 | MTR_4g084780 | 39.640 | 111 | 51 | 2 | 74 | 168 | 1 | 111 | 5.45e-14 | 67.4 |
MS.gene043074.t1 | MTR_6g018920 | 32.743 | 113 | 69 | 4 | 1 | 107 | 1 | 112 | 1.72e-13 | 68.9 |
MS.gene043074.t1 | MTR_6g005450 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 2.31e-13 | 68.6 |
MS.gene043074.t1 | MTR_1g114730 | 31.783 | 129 | 76 | 4 | 1 | 123 | 1 | 123 | 2.33e-13 | 68.6 |
MS.gene043074.t1 | MTR_6g005440 | 36.283 | 113 | 65 | 4 | 1 | 107 | 1 | 112 | 3.07e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043074.t1 | AT5G48670 | 53.896 | 154 | 70 | 1 | 1 | 154 | 1 | 153 | 3.67e-46 | 156 |
MS.gene043074.t1 | AT5G26630 | 42.927 | 205 | 106 | 2 | 1 | 195 | 1 | 204 | 3.20e-42 | 142 |
MS.gene043074.t1 | AT1G65300 | 44.737 | 152 | 83 | 1 | 3 | 154 | 2 | 152 | 6.06e-41 | 141 |
MS.gene043074.t1 | AT1G65330 | 45.395 | 152 | 82 | 1 | 3 | 154 | 2 | 152 | 1.41e-39 | 137 |
MS.gene043074.t1 | AT5G26650 | 45.714 | 140 | 75 | 1 | 5 | 144 | 3 | 141 | 5.40e-37 | 133 |
MS.gene043074.t1 | AT5G27960 | 46.667 | 135 | 71 | 1 | 5 | 139 | 3 | 136 | 1.03e-36 | 131 |
MS.gene043074.t1 | AT1G31630 | 39.865 | 148 | 87 | 2 | 3 | 150 | 2 | 147 | 1.32e-35 | 129 |
MS.gene043074.t1 | AT2G28700 | 38.636 | 176 | 101 | 3 | 1 | 174 | 1 | 171 | 7.56e-34 | 124 |
MS.gene043074.t1 | AT3G05860 | 37.267 | 161 | 100 | 1 | 1 | 161 | 1 | 160 | 1.00e-32 | 118 |
MS.gene043074.t1 | AT5G27810 | 55.914 | 93 | 41 | 0 | 29 | 121 | 1 | 93 | 2.32e-32 | 114 |
MS.gene043074.t1 | AT1G31640 | 39.189 | 148 | 88 | 2 | 3 | 150 | 2 | 147 | 3.94e-32 | 122 |
MS.gene043074.t1 | AT3G05860 | 37.267 | 161 | 100 | 1 | 1 | 161 | 1 | 160 | 5.20e-32 | 117 |
MS.gene043074.t1 | AT3G05860 | 37.267 | 161 | 100 | 1 | 1 | 161 | 1 | 160 | 7.22e-32 | 117 |
MS.gene043074.t1 | AT5G26580 | 36.806 | 144 | 76 | 2 | 1 | 144 | 1 | 129 | 1.97e-25 | 102 |
MS.gene043074.t1 | AT1G22590 | 30.247 | 162 | 109 | 1 | 1 | 162 | 1 | 158 | 6.70e-24 | 94.0 |
MS.gene043074.t1 | AT5G06500 | 36.496 | 137 | 80 | 1 | 1 | 137 | 1 | 130 | 1.29e-21 | 90.1 |
MS.gene043074.t1 | AT2G40210 | 40.157 | 127 | 75 | 1 | 1 | 127 | 1 | 126 | 2.33e-19 | 85.9 |
MS.gene043074.t1 | AT5G58890 | 41.593 | 113 | 55 | 5 | 6 | 109 | 6 | 116 | 3.00e-16 | 76.3 |
MS.gene043074.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.67e-13 | 68.6 |
MS.gene043074.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.67e-13 | 68.6 |
MS.gene043074.t1 | AT2G15660 | 27.027 | 148 | 94 | 3 | 38 | 176 | 31 | 173 | 7.16e-12 | 63.5 |
MS.gene043074.t1 | AT5G27090 | 28.221 | 163 | 95 | 6 | 7 | 164 | 23 | 168 | 9.10e-11 | 59.3 |
MS.gene043074.t1 | AT5G27944 | 32.727 | 110 | 62 | 3 | 24 | 131 | 41 | 140 | 9.33e-11 | 60.1 |
Find 58 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTTGGTGAGATCAATTC+TGG | 0.238779 | 4.2:-73174398 | MS.gene043074:CDS |
GAGCGAAGAAATGGCAATTA+TGG | 0.251384 | 4.2:-73174519 | MS.gene043074:CDS |
TACCAATGTCCTTCAAATTA+TGG | 0.252012 | 4.2:+73174588 | None:intergenic |
TCCTTCAAAGGTAGTAAATC+AGG | 0.298213 | 4.2:+73174368 | None:intergenic |
AAGAAAGGGTCTATTGAAAA+AGG | 0.312767 | 4.2:-73174948 | MS.gene043074:CDS |
CCCTGATTTACTACCTTTGA+AGG | 0.324619 | 4.2:-73174369 | MS.gene043074:CDS |
ATGAGCCTCAACCAGAGATT+TGG | 0.345216 | 4.2:-73174868 | MS.gene043074:CDS |
ATCTCTGGTTGAGGCTCATA+AGG | 0.350685 | 4.2:+73174872 | None:intergenic |
AAAATGTCATCACCATTAAT+AGG | 0.355958 | 4.2:+73174476 | None:intergenic |
TTTGCAAAGTCAATTATTGA+TGG | 0.379269 | 4.2:-73174456 | MS.gene043074:CDS |
GAAGGACATTGGTAGACATT+TGG | 0.385901 | 4.2:-73174579 | MS.gene043074:CDS |
AGCGAAGAAATGGCAATTAT+GGG | 0.425600 | 4.2:-73174518 | MS.gene043074:CDS |
AGCATCTAGGAGCGAAGAAA+TGG | 0.428793 | 4.2:-73174528 | MS.gene043074:CDS |
TCTGGTGAAGGCCAAATCTC+TGG | 0.429918 | 4.2:+73174857 | None:intergenic |
GTTGATTGACCATAATTTGA+AGG | 0.445081 | 4.2:-73174597 | MS.gene043074:CDS |
TGTGCACAACAATATTTCAA+TGG | 0.460764 | 4.2:-73174642 | MS.gene043074:CDS |
CACAACCATGGCTAGAAGTA+AGG | 0.461347 | 4.2:-73175026 | None:intergenic |
CTCATAAGGGCCATACACTA+TGG | 0.468858 | 4.2:+73174886 | None:intergenic |
ATCATACAAGAAAAGAAGAA+AGG | 0.473094 | 4.2:-73174963 | MS.gene043074:CDS |
CTTGACACAAAGGGTTCTGA+AGG | 0.478789 | 4.2:-73174753 | MS.gene043074:CDS |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.2:-73174447 | MS.gene043074:CDS |
CATGTTGGGATACCTATTAA+TGG | 0.485702 | 4.2:-73174488 | MS.gene043074:CDS |
TCTTCGCTCCTAGATGCTGC+TGG | 0.487238 | 4.2:+73174533 | None:intergenic |
TTGATTTGAGTTATCTTACT+TGG | 0.491177 | 4.2:-73174619 | MS.gene043074:CDS |
GATGCTGCTGGAGGTGATAG+TGG | 0.492236 | 4.2:+73174545 | None:intergenic |
TATCACCTCCAGCAGCATCT+AGG | 0.496968 | 4.2:-73174541 | MS.gene043074:CDS |
TTATGGGTCATGGACATGTT+GGG | 0.500968 | 4.2:-73174502 | MS.gene043074:CDS |
TGCAGCATCATTGACAATGA+AGG | 0.502295 | 4.2:+73174994 | None:intergenic |
ATTATGGGTCATGGACATGT+TGG | 0.516074 | 4.2:-73174503 | MS.gene043074:CDS |
AGAGACTTTCTTGACACAAA+GGG | 0.517022 | 4.2:-73174762 | MS.gene043074:CDS |
GACCATAATTTGAAGGACAT+TGG | 0.517963 | 4.2:-73174590 | MS.gene043074:CDS |
GAAATGGCAATTATGGGTCA+TGG | 0.521926 | 4.2:-73174512 | MS.gene043074:CDS |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | 4.2:+73174765 | None:intergenic |
TCATACAAGAAAAGAAGAAA+GGG | 0.526600 | 4.2:-73174962 | MS.gene043074:CDS |
TTTAACCTTACTTCTAGCCA+TGG | 0.533701 | 4.2:+73175021 | None:intergenic |
GGACATTGGTAGACATTTGG+CGG | 0.537707 | 4.2:-73174576 | MS.gene043074:CDS |
ATGTATCATTGTCTCAATGA+AGG | 0.546520 | 4.2:-73174671 | MS.gene043074:CDS |
TCTCTGGTTGAGGCTCATAA+GGG | 0.546756 | 4.2:+73174873 | None:intergenic |
CCAGAATTGATCTCACCAAA+GGG | 0.554343 | 4.2:+73174398 | None:intergenic |
GTGCAAGAGACAGTGCCCTT+TGG | 0.557727 | 4.2:-73174413 | MS.gene043074:CDS |
GAAGCCTGTGCCATAGTGTA+TGG | 0.559714 | 4.2:-73174896 | MS.gene043074:CDS |
CCTTCAAAGGTAGTAAATCA+GGG | 0.575295 | 4.2:+73174369 | None:intergenic |
GAGATTTGGCCTTCACCAGA+GGG | 0.575380 | 4.2:-73174854 | MS.gene043074:CDS |
GAAGGCCAAATCTCTGGTTG+AGG | 0.576852 | 4.2:+73174863 | None:intergenic |
TCCAGAATTGATCTCACCAA+AGG | 0.590517 | 4.2:+73174397 | None:intergenic |
ATTGAGAAAAGATCCTTCAA+AGG | 0.601093 | 4.2:+73174356 | None:intergenic |
ACAGGCTTCAATGCCACAGA+GGG | 0.601811 | 4.2:+73174910 | None:intergenic |
GATTTGGCCTTCACCAGAGG+GGG | 0.601928 | 4.2:-73174852 | MS.gene043074:CDS |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.2:-73174440 | MS.gene043074:CDS |
AAGAGACTTTCTTGACACAA+AGG | 0.607804 | 4.2:-73174763 | MS.gene043074:CDS |
AGAGATTTGGCCTTCACCAG+AGG | 0.616752 | 4.2:-73174855 | MS.gene043074:CDS |
AGGGCCATACACTATGGCAC+AGG | 0.641363 | 4.2:+73174892 | None:intergenic |
TCATTGTCAATGATGCTGCA+AGG | 0.652548 | 4.2:-73174991 | MS.gene043074:CDS |
ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4.2:-73174444 | MS.gene043074:CDS |
TCGCTCCTAGATGCTGCTGG+AGG | 0.676090 | 4.2:+73174536 | None:intergenic |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.2:-73174923 | MS.gene043074:CDS |
CACAGGCTTCAATGCCACAG+AGG | 0.696692 | 4.2:+73174909 | None:intergenic |
AGATTTGGCCTTCACCAGAG+GGG | 0.703414 | 4.2:-73174853 | MS.gene043074:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAATGTCATCACCATTAAT+AGG | + | chr4.2:73174898-73174917 | None:intergenic | 25.0% |
! | ATCATACAAGAAAAGAAGAA+AGG | - | chr4.2:73174408-73174427 | MS.gene043074:CDS | 25.0% |
! | TCATACAAGAAAAGAAGAAA+GGG | - | chr4.2:73174409-73174428 | MS.gene043074:CDS | 25.0% |
! | TTTGCAAAGTCAATTATTGA+TGG | - | chr4.2:73174915-73174934 | MS.gene043074:CDS | 25.0% |
!! | TTGATTTGAGTTATCTTACT+TGG | - | chr4.2:73174752-73174771 | MS.gene043074:CDS | 25.0% |
AAGAAAGGGTCTATTGAAAA+AGG | - | chr4.2:73174423-73174442 | MS.gene043074:CDS | 30.0% | |
ATGTATCATTGTCTCAATGA+AGG | - | chr4.2:73174700-73174719 | MS.gene043074:CDS | 30.0% | |
ATTGAGAAAAGATCCTTCAA+AGG | + | chr4.2:73175018-73175037 | None:intergenic | 30.0% | |
GTTGATTGACCATAATTTGA+AGG | - | chr4.2:73174774-73174793 | MS.gene043074:CDS | 30.0% | |
TACCAATGTCCTTCAAATTA+TGG | + | chr4.2:73174786-73174805 | None:intergenic | 30.0% | |
TGTGCACAACAATATTTCAA+TGG | - | chr4.2:73174729-73174748 | MS.gene043074:CDS | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.2:73174924-73174943 | MS.gene043074:CDS | 30.0% |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.2:73174608-73174627 | MS.gene043074:CDS | 35.0% | |
AGAGACTTTCTTGACACAAA+GGG | - | chr4.2:73174609-73174628 | MS.gene043074:CDS | 35.0% | |
AGCGAAGAAATGGCAATTAT+GGG | - | chr4.2:73174853-73174872 | MS.gene043074:CDS | 35.0% | |
CATGTTGGGATACCTATTAA+TGG | - | chr4.2:73174883-73174902 | MS.gene043074:CDS | 35.0% | |
CCTTCAAAGGTAGTAAATCA+GGG | + | chr4.2:73175005-73175024 | None:intergenic | 35.0% | |
GACCATAATTTGAAGGACAT+TGG | - | chr4.2:73174781-73174800 | MS.gene043074:CDS | 35.0% | |
TCCTTCAAAGGTAGTAAATC+AGG | + | chr4.2:73175006-73175025 | None:intergenic | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.2:73174609-73174628 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.2:73174927-73174946 | MS.gene043074:CDS | 35.0% |
ATTATGGGTCATGGACATGT+TGG | - | chr4.2:73174868-73174887 | MS.gene043074:CDS | 40.0% | |
CCAGAATTGATCTCACCAAA+GGG | + | chr4.2:73174976-73174995 | None:intergenic | 40.0% | |
CCCTGATTTACTACCTTTGA+AGG | - | chr4.2:73175002-73175021 | MS.gene043074:CDS | 40.0% | |
GAAATGGCAATTATGGGTCA+TGG | - | chr4.2:73174859-73174878 | MS.gene043074:CDS | 40.0% | |
GAAGGACATTGGTAGACATT+TGG | - | chr4.2:73174792-73174811 | MS.gene043074:CDS | 40.0% | |
GAGCGAAGAAATGGCAATTA+TGG | - | chr4.2:73174852-73174871 | MS.gene043074:CDS | 40.0% | |
TCATTGTCAATGATGCTGCA+AGG | - | chr4.2:73174380-73174399 | MS.gene043074:CDS | 40.0% | |
TCCAGAATTGATCTCACCAA+AGG | + | chr4.2:73174977-73174996 | None:intergenic | 40.0% | |
TGCAGCATCATTGACAATGA+AGG | + | chr4.2:73174380-73174399 | None:intergenic | 40.0% | |
TTATGGGTCATGGACATGTT+GGG | - | chr4.2:73174869-73174888 | MS.gene043074:CDS | 40.0% | |
!! | CGTCATGAATTTTGAGAGCA+CGG | + | chr4.2:73174551-73174570 | None:intergenic | 40.0% |
!! | TGAATTTTGAGAGCACGGAT+TGG | + | chr4.2:73174546-73174565 | None:intergenic | 40.0% |
AGCATCTAGGAGCGAAGAAA+TGG | - | chr4.2:73174843-73174862 | MS.gene043074:CDS | 45.0% | |
ATCTCTGGTTGAGGCTCATA+AGG | + | chr4.2:73174502-73174521 | None:intergenic | 45.0% | |
ATGAGCCTCAACCAGAGATT+TGG | - | chr4.2:73174503-73174522 | MS.gene043074:CDS | 45.0% | |
CCCTTTGGTGAGATCAATTC+TGG | - | chr4.2:73174973-73174992 | MS.gene043074:CDS | 45.0% | |
CTCATAAGGGCCATACACTA+TGG | + | chr4.2:73174488-73174507 | None:intergenic | 45.0% | |
GGACATTGGTAGACATTTGG+CGG | - | chr4.2:73174795-73174814 | MS.gene043074:CDS | 45.0% | |
TCTCTGGTTGAGGCTCATAA+GGG | + | chr4.2:73174501-73174520 | None:intergenic | 45.0% | |
! | CTTGACACAAAGGGTTCTGA+AGG | - | chr4.2:73174618-73174637 | MS.gene043074:CDS | 45.0% |
ACAGGCTTCAATGCCACAGA+GGG | + | chr4.2:73174464-73174483 | None:intergenic | 50.0% | |
GAAGCCTGTGCCATAGTGTA+TGG | - | chr4.2:73174475-73174494 | MS.gene043074:CDS | 50.0% | |
GAAGGCCAAATCTCTGGTTG+AGG | + | chr4.2:73174511-73174530 | None:intergenic | 50.0% | |
TATCACCTCCAGCAGCATCT+AGG | - | chr4.2:73174830-73174849 | MS.gene043074:CDS | 50.0% | |
TCTGGTGAAGGCCAAATCTC+TGG | + | chr4.2:73174517-73174536 | None:intergenic | 50.0% | |
! | AGAGATTTGGCCTTCACCAG+AGG | - | chr4.2:73174516-73174535 | MS.gene043074:CDS | 50.0% |
! | AGATTTGGCCTTCACCAGAG+GGG | - | chr4.2:73174518-73174537 | MS.gene043074:CDS | 50.0% |
! | GAGATTTGGCCTTCACCAGA+GGG | - | chr4.2:73174517-73174536 | MS.gene043074:CDS | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.2:73174931-73174950 | MS.gene043074:CDS | 50.0% |
AGGGCCATACACTATGGCAC+AGG | + | chr4.2:73174482-73174501 | None:intergenic | 55.0% | |
CACAGGCTTCAATGCCACAG+AGG | + | chr4.2:73174465-73174484 | None:intergenic | 55.0% | |
GATGCTGCTGGAGGTGATAG+TGG | + | chr4.2:73174829-73174848 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+TGG | - | chr4.2:73174448-73174467 | MS.gene043074:CDS | 55.0% | |
GTGCAAGAGACAGTGCCCTT+TGG | - | chr4.2:73174958-73174977 | MS.gene043074:CDS | 55.0% | |
TCTTCGCTCCTAGATGCTGC+TGG | + | chr4.2:73174841-73174860 | None:intergenic | 55.0% | |
! | GATTTGGCCTTCACCAGAGG+GGG | - | chr4.2:73174519-73174538 | MS.gene043074:CDS | 55.0% |
GATTGGACCCCCTCTGGTGA+AGG | + | chr4.2:73174529-73174548 | None:intergenic | 60.0% | |
TCGCTCCTAGATGCTGCTGG+AGG | + | chr4.2:73174838-73174857 | None:intergenic | 60.0% | |
!! | AGCACGGATTGGACCCCCTC+TGG | + | chr4.2:73174535-73174554 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 73174352 | 73175041 | 73174352 | ID=MS.gene043074 |
chr4.2 | mRNA | 73174352 | 73175041 | 73174352 | ID=MS.gene043074.t1;Parent=MS.gene043074 |
chr4.2 | exon | 73174352 | 73175041 | 73174352 | ID=MS.gene043074.t1.exon1;Parent=MS.gene043074.t1 |
chr4.2 | CDS | 73174352 | 73175041 | 73174352 | ID=cds.MS.gene043074.t1;Parent=MS.gene043074.t1 |
Gene Sequence |
Protein sequence |