Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043077.t1 | XP_003605494.2 | 79.8 | 242 | 36 | 1 | 4 | 245 | 3 | 231 | 8.10E-101 | 376.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043077.t1 | Q9FJK3 | 46.6 | 193 | 101 | 2 | 4 | 196 | 3 | 193 | 9.3e-37 | 155.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043077.t1 | G7JN54 | 79.8 | 242 | 36 | 1 | 4 | 245 | 3 | 231 | 5.9e-101 | 376.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene043077.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043077.t1 | MTR_4g031910 | 82.231 | 242 | 28 | 1 | 4 | 245 | 3 | 229 | 2.17e-135 | 380 |
MS.gene043077.t1 | MTR_4g032290 | 79.752 | 242 | 36 | 1 | 4 | 245 | 3 | 231 | 9.94e-131 | 369 |
MS.gene043077.t1 | MTR_8g036130 | 61.355 | 251 | 82 | 5 | 4 | 245 | 3 | 247 | 8.78e-98 | 286 |
MS.gene043077.t1 | MTR_4g032620 | 57.959 | 245 | 89 | 4 | 1 | 245 | 1 | 231 | 6.05e-94 | 275 |
MS.gene043077.t1 | MTR_4g032260 | 80.519 | 154 | 30 | 0 | 4 | 157 | 3 | 156 | 7.64e-80 | 237 |
MS.gene043077.t1 | MTR_3g065100 | 48.548 | 241 | 117 | 4 | 4 | 242 | 3 | 238 | 2.63e-62 | 195 |
MS.gene043077.t1 | MTR_3g466980 | 54.248 | 153 | 69 | 1 | 4 | 156 | 3 | 154 | 5.91e-57 | 181 |
MS.gene043077.t1 | MTR_4g032270 | 55.629 | 151 | 46 | 2 | 95 | 245 | 2 | 131 | 5.99e-51 | 162 |
MS.gene043077.t1 | MTR_2g035610 | 72.500 | 120 | 33 | 0 | 4 | 123 | 3 | 122 | 7.57e-49 | 157 |
MS.gene043077.t1 | MTR_3g466830 | 43.478 | 161 | 90 | 1 | 4 | 164 | 2 | 161 | 4.81e-42 | 141 |
MS.gene043077.t1 | MTR_5g075380 | 44.000 | 150 | 83 | 1 | 6 | 155 | 5 | 153 | 3.58e-40 | 136 |
MS.gene043077.t1 | MTR_4g063790 | 40.491 | 163 | 97 | 0 | 4 | 166 | 3 | 165 | 7.10e-40 | 135 |
MS.gene043077.t1 | MTR_3g466890 | 40.881 | 159 | 93 | 1 | 4 | 162 | 2 | 159 | 1.01e-37 | 130 |
MS.gene043077.t1 | MTR_3g467080 | 39.610 | 154 | 93 | 0 | 4 | 157 | 3 | 156 | 2.00e-37 | 129 |
MS.gene043077.t1 | MTR_5g047580 | 44.156 | 154 | 84 | 2 | 4 | 157 | 3 | 154 | 4.31e-37 | 128 |
MS.gene043077.t1 | MTR_3g031100 | 40.764 | 157 | 92 | 1 | 1 | 157 | 1 | 156 | 1.07e-36 | 130 |
MS.gene043077.t1 | MTR_2g016210 | 40.132 | 152 | 91 | 0 | 6 | 157 | 5 | 156 | 3.08e-36 | 128 |
MS.gene043077.t1 | MTR_1g077390 | 40.260 | 154 | 90 | 2 | 4 | 157 | 3 | 154 | 7.93e-33 | 117 |
MS.gene043077.t1 | MTR_1g090783 | 38.312 | 154 | 93 | 2 | 4 | 157 | 2 | 153 | 2.23e-32 | 116 |
MS.gene043077.t1 | MTR_1g090710 | 38.365 | 159 | 96 | 2 | 1 | 159 | 1 | 157 | 7.47e-32 | 114 |
MS.gene043077.t1 | MTR_1g090697 | 38.462 | 156 | 94 | 2 | 4 | 159 | 3 | 156 | 1.88e-31 | 114 |
MS.gene043077.t1 | MTR_3g465410 | 39.416 | 137 | 83 | 0 | 30 | 166 | 1 | 137 | 5.61e-31 | 112 |
MS.gene043077.t1 | MTR_1g084950 | 42.857 | 154 | 86 | 2 | 4 | 157 | 3 | 154 | 4.59e-30 | 110 |
MS.gene043077.t1 | MTR_1g077320 | 41.558 | 154 | 88 | 2 | 4 | 157 | 3 | 154 | 7.40e-30 | 109 |
MS.gene043077.t1 | MTR_7g011950 | 41.558 | 154 | 88 | 2 | 4 | 157 | 3 | 154 | 7.56e-30 | 109 |
MS.gene043077.t1 | MTR_4g028800 | 77.273 | 66 | 13 | 1 | 6 | 71 | 5 | 68 | 6.84e-29 | 104 |
MS.gene043077.t1 | MTR_4g028720 | 40.260 | 154 | 90 | 2 | 4 | 157 | 3 | 154 | 2.68e-28 | 105 |
MS.gene043077.t1 | MTR_1g077300 | 40.881 | 159 | 90 | 2 | 4 | 162 | 3 | 157 | 6.92e-27 | 102 |
MS.gene043077.t1 | MTR_3g031240 | 32.704 | 159 | 106 | 1 | 1 | 159 | 1 | 158 | 7.29e-27 | 102 |
MS.gene043077.t1 | MTR_3g466900 | 36.923 | 130 | 81 | 1 | 33 | 162 | 2 | 130 | 7.85e-27 | 100 |
MS.gene043077.t1 | MTR_7g055800 | 49.573 | 117 | 31 | 2 | 4 | 120 | 3 | 91 | 9.69e-27 | 99.4 |
MS.gene043077.t1 | MTR_4g019670 | 38.462 | 156 | 80 | 2 | 3 | 158 | 5 | 144 | 5.98e-25 | 103 |
MS.gene043077.t1 | MTR_7g106510 | 37.821 | 156 | 81 | 2 | 3 | 158 | 5 | 144 | 6.21e-25 | 102 |
MS.gene043077.t1 | MTR_7g055790 | 53.211 | 109 | 33 | 1 | 4 | 112 | 61 | 151 | 1.15e-24 | 95.9 |
MS.gene043077.t1 | MTR_3g466930 | 34.615 | 130 | 84 | 1 | 33 | 162 | 2 | 130 | 1.21e-24 | 95.5 |
MS.gene043077.t1 | MTR_3g093900 | 29.016 | 193 | 126 | 2 | 3 | 195 | 5 | 186 | 1.51e-24 | 102 |
MS.gene043077.t1 | MTR_2g035590 | 58.763 | 97 | 39 | 1 | 75 | 170 | 1 | 97 | 3.62e-24 | 93.2 |
MS.gene043077.t1 | MTR_2g035580 | 33.775 | 151 | 99 | 1 | 7 | 157 | 6 | 155 | 1.97e-21 | 87.8 |
MS.gene043077.t1 | MTR_7g055940 | 48.077 | 104 | 26 | 2 | 4 | 107 | 3 | 78 | 4.59e-21 | 84.3 |
MS.gene043077.t1 | MTR_5g047560 | 40.870 | 115 | 51 | 2 | 4 | 118 | 3 | 100 | 5.62e-19 | 80.9 |
MS.gene043077.t1 | MTR_4g084780 | 57.692 | 52 | 22 | 0 | 75 | 126 | 1 | 52 | 1.43e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043077.t1 | AT5G48670 | 52.532 | 158 | 74 | 1 | 4 | 161 | 3 | 159 | 1.37e-43 | 150 |
MS.gene043077.t1 | AT1G65300 | 39.674 | 184 | 97 | 3 | 4 | 187 | 2 | 171 | 2.76e-39 | 137 |
MS.gene043077.t1 | AT5G26630 | 41.872 | 203 | 101 | 3 | 4 | 204 | 3 | 190 | 1.34e-38 | 134 |
MS.gene043077.t1 | AT1G65330 | 40.000 | 185 | 97 | 2 | 4 | 188 | 2 | 172 | 3.15e-38 | 135 |
MS.gene043077.t1 | AT5G26650 | 39.634 | 164 | 98 | 1 | 6 | 169 | 3 | 165 | 7.22e-35 | 128 |
MS.gene043077.t1 | AT5G27960 | 39.024 | 164 | 99 | 1 | 6 | 169 | 3 | 165 | 4.13e-34 | 125 |
MS.gene043077.t1 | AT1G31630 | 34.066 | 182 | 105 | 3 | 4 | 185 | 2 | 168 | 1.32e-32 | 121 |
MS.gene043077.t1 | AT1G31640 | 37.748 | 151 | 92 | 2 | 4 | 154 | 2 | 150 | 1.18e-29 | 115 |
MS.gene043077.t1 | AT5G27810 | 53.763 | 93 | 43 | 0 | 30 | 122 | 1 | 93 | 5.60e-29 | 106 |
MS.gene043077.t1 | AT3G05860 | 37.838 | 148 | 91 | 1 | 4 | 151 | 3 | 149 | 9.08e-28 | 105 |
MS.gene043077.t1 | AT3G05860 | 37.838 | 148 | 91 | 1 | 4 | 151 | 3 | 149 | 2.84e-27 | 105 |
MS.gene043077.t1 | AT3G05860 | 37.838 | 148 | 91 | 1 | 4 | 151 | 3 | 149 | 2.93e-27 | 105 |
MS.gene043077.t1 | AT2G28700 | 35.152 | 165 | 102 | 2 | 4 | 166 | 3 | 164 | 9.10e-26 | 103 |
MS.gene043077.t1 | AT5G26580 | 35.256 | 156 | 85 | 3 | 1 | 156 | 1 | 140 | 7.18e-24 | 98.6 |
MS.gene043077.t1 | AT1G22590 | 31.210 | 157 | 103 | 2 | 1 | 157 | 1 | 152 | 2.02e-23 | 93.2 |
MS.gene043077.t1 | AT5G06500 | 37.500 | 120 | 75 | 0 | 4 | 123 | 3 | 122 | 8.49e-19 | 82.8 |
MS.gene043077.t1 | AT2G40210 | 39.098 | 133 | 79 | 2 | 4 | 135 | 3 | 134 | 2.79e-17 | 80.5 |
MS.gene043077.t1 | AT5G58890 | 37.795 | 127 | 68 | 5 | 7 | 124 | 6 | 130 | 2.09e-14 | 71.6 |
MS.gene043077.t1 | AT5G55690 | 41.772 | 79 | 38 | 3 | 1 | 72 | 1 | 78 | 6.25e-11 | 61.6 |
MS.gene043077.t1 | AT5G55690 | 41.772 | 79 | 38 | 3 | 1 | 72 | 1 | 78 | 6.25e-11 | 61.6 |
Find 62 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | 4.2:-73147637 | MS.gene043077:CDS |
GAGTGAAGAAATGGCAATTA+TGG | 0.233693 | 4.2:-73147375 | MS.gene043077:CDS |
CCATTTGGTGAGGTCAATTC+TGG | 0.238528 | 4.2:-73147254 | MS.gene043077:CDS |
TCAATTTCTCTTCAGCCTTC+AGG | 0.259829 | 4.2:+73147660 | None:intergenic |
AACGAAGGGTCTATTGAAAA+AGG | 0.335070 | 4.2:-73147870 | MS.gene043077:CDS |
ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | 4.2:-73147790 | MS.gene043077:CDS |
ATAATGTCATCATCATTAAT+AGG | 0.375800 | 4.2:+73147332 | None:intergenic |
GAAGCCTTTGCCATAGTGTA+TGG | 0.388094 | 4.2:-73147818 | MS.gene043077:CDS |
TCGCCATTTCGAGTTGGACT+TGG | 0.402057 | 4.2:+73147432 | None:intergenic |
TATGCAAAGTCAATTATTGA+TGG | 0.408286 | 4.2:-73147312 | MS.gene043077:CDS |
ATCTCAGGTTGAGGCTCATA+AGG | 0.418788 | 4.2:+73147794 | None:intergenic |
GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | 4.2:-73147636 | MS.gene043077:CDS |
GTGAGGTCAATTCTGGACTT+TGG | 0.420430 | 4.2:-73147247 | MS.gene043077:CDS |
AGTGAAGAAATGGCAATTAT+GGG | 0.424565 | 4.2:-73147374 | MS.gene043077:CDS |
GAAGGATGTTAGTAGACGTT+TGG | 0.425640 | 4.2:-73147501 | MS.gene043077:CDS |
GGTCTGATTTACTACCTTGA+AGG | 0.436579 | 4.2:-73147226 | None:intergenic |
AAACCAAGTCCAACTCGAAA+TGG | 0.452175 | 4.2:-73147435 | MS.gene043077:CDS |
AGCATCTAGGAGTGAAGAAA+TGG | 0.457574 | 4.2:-73147384 | MS.gene043077:CDS |
AACCTTACTTCTTCTACCCA+TGG | 0.464315 | 4.2:+73147946 | None:intergenic |
CTCATAAGGTCCATACACTA+TGG | 0.467279 | 4.2:+73147808 | None:intergenic |
TTATGGGTCATGGCCATGTT+GGG | 0.476409 | 4.2:-73147358 | MS.gene043077:CDS |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.2:-73147303 | MS.gene043077:CDS |
GTTGATTGACCACAATTTGA+AGG | 0.487410 | 4.2:-73147519 | MS.gene043077:CDS |
TCTGGTAAAGGCCAAATCTC+AGG | 0.493519 | 4.2:+73147779 | None:intergenic |
AACCATGGGTAGAAGAAGTA+AGG | 0.501192 | 4.2:-73147948 | None:intergenic |
TTAGTAGACGTTTGGAAGCA+TGG | 0.506023 | 4.2:-73147493 | MS.gene043077:CDS |
CCAGAATTGACCTCACCAAA+TGG | 0.507378 | 4.2:+73147254 | None:intergenic |
GATTGGACACCCTCTGGTAA+AGG | 0.514238 | 4.2:+73147767 | None:intergenic |
TGCAACATCATTGACAATGA+AGG | 0.517037 | 4.2:+73147916 | None:intergenic |
ATGAGTCAATGTCTTAATGA+AGG | 0.517500 | 4.2:-73147593 | MS.gene043077:CDS |
CAATGATCAAAATCAAATCA+TGG | 0.521352 | 4.2:-73147465 | MS.gene043077:CDS |
AGCACAGATTGGACACCCTC+TGG | 0.522070 | 4.2:+73147761 | None:intergenic |
CACCACTTCTAGCAGCATCT+AGG | 0.525777 | 4.2:-73147397 | MS.gene043077:CDS |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | 4.2:+73147687 | None:intergenic |
TGGATATGAGTTATGTTGCT+TGG | 0.532880 | 4.2:-73147541 | MS.gene043077:CDS |
AGAGACTTTCTTGACACAAA+GGG | 0.533444 | 4.2:-73147684 | MS.gene043077:CDS |
GTGCAAGAGACAGTGCCATT+TGG | 0.542398 | 4.2:-73147269 | MS.gene043077:CDS |
TACTAACATCCTTCAAATTG+TGG | 0.547844 | 4.2:+73147510 | None:intergenic |
GAAATGGCAATTATGGGTCA+TGG | 0.549964 | 4.2:-73147368 | MS.gene043077:CDS |
TAGTAGACGTTTGGAAGCAT+GGG | 0.553921 | 4.2:-73147492 | MS.gene043077:CDS |
GAGATTTGGCCTTTACCAGA+GGG | 0.563951 | 4.2:-73147776 | MS.gene043077:CDS |
ATTATGGGTCATGGCCATGT+TGG | 0.565284 | 4.2:-73147359 | MS.gene043077:CDS |
CTTGACACAAAGGGTCCTGA+AGG | 0.570745 | 4.2:-73147675 | MS.gene043077:CDS |
CTCCTAGATGCTGCTAGAAG+TGG | 0.571630 | 4.2:+73147395 | None:intergenic |
TTGTTGTCGCCATTTCGAGT+TGG | 0.584691 | 4.2:+73147426 | None:intergenic |
CATTAATAGGTATCCCAACA+TGG | 0.589301 | 4.2:+73147345 | None:intergenic |
TCATTGTCAATGATGTTGCA+AGG | 0.595963 | 4.2:-73147913 | MS.gene043077:CDS |
AAAGGCCAAATCTCAGGTTG+AGG | 0.605277 | 4.2:+73147785 | None:intergenic |
CTAGATGCTGCTAGAAGTGG+TGG | 0.605478 | 4.2:+73147398 | None:intergenic |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.2:-73147296 | MS.gene043077:CDS |
AAAGGCTTCAATGCCACAGA+GGG | 0.618725 | 4.2:+73147832 | None:intergenic |
ATCATACAAGAAAAGAACGA+AGG | 0.618898 | 4.2:-73147885 | MS.gene043077:CDS |
TCATACAAGAAAAGAACGAA+GGG | 0.620354 | 4.2:-73147884 | MS.gene043077:CDS |
AAGAGACTTTCTTGACACAA+AGG | 0.620991 | 4.2:-73147685 | MS.gene043077:CDS |
TGAGATTTGGCCTTTACCAG+AGG | 0.625137 | 4.2:-73147777 | MS.gene043077:CDS |
GATGCTGCTAGAAGTGGTGG+TGG | 0.633563 | 4.2:+73147401 | None:intergenic |
AGGTCCATACACTATGGCAA+AGG | 0.638234 | 4.2:+73147814 | None:intergenic |
AGAGACAGTGCCATTTGGTG+AGG | 0.639188 | 4.2:-73147264 | MS.gene043077:CDS |
ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4.2:-73147300 | MS.gene043077:CDS |
GCATGACAATATGTCAACAA+TGG | 0.671130 | 4.2:-73147561 | MS.gene043077:CDS |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.2:-73147845 | MS.gene043077:CDS |
CAAAGGCTTCAATGCCACAG+AGG | 0.706392 | 4.2:+73147831 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAACAAAGAAAAGAAAAT+AGG | - | chr4.2:73147536-73147555 | MS.gene043077:CDS | 20.0% |
!! | ATAATGTCATCATCATTAAT+AGG | + | chr4.2:73147844-73147863 | None:intergenic | 20.0% |
!! | GAAACAAAGAAAAGAAAATA+GGG | - | chr4.2:73147537-73147556 | MS.gene043077:CDS | 20.0% |
! | CAATGATCAAAATCAAATCA+TGG | - | chr4.2:73147708-73147727 | MS.gene043077:CDS | 25.0% |
! | TATGCAAAGTCAATTATTGA+TGG | - | chr4.2:73147861-73147880 | MS.gene043077:CDS | 25.0% |
AGTGAAGAAATGGCAATTAT+GGG | - | chr4.2:73147799-73147818 | MS.gene043077:CDS | 30.0% | |
ATCATACAAGAAAAGAACGA+AGG | - | chr4.2:73147288-73147307 | MS.gene043077:CDS | 30.0% | |
ATGAGTCAATGTCTTAATGA+AGG | - | chr4.2:73147580-73147599 | MS.gene043077:CDS | 30.0% | |
TACTAACATCCTTCAAATTG+TGG | + | chr4.2:73147666-73147685 | None:intergenic | 30.0% | |
TCATACAAGAAAAGAACGAA+GGG | - | chr4.2:73147289-73147308 | MS.gene043077:CDS | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.2:73147870-73147889 | MS.gene043077:CDS | 30.0% |
AACGAAGGGTCTATTGAAAA+AGG | - | chr4.2:73147303-73147322 | MS.gene043077:CDS | 35.0% | |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.2:73147488-73147507 | MS.gene043077:CDS | 35.0% | |
AGAGACTTTCTTGACACAAA+GGG | - | chr4.2:73147489-73147508 | MS.gene043077:CDS | 35.0% | |
CATTAATAGGTATCCCAACA+TGG | + | chr4.2:73147831-73147850 | None:intergenic | 35.0% | |
GAGTGAAGAAATGGCAATTA+TGG | - | chr4.2:73147798-73147817 | MS.gene043077:CDS | 35.0% | |
GCATGACAATATGTCAACAA+TGG | - | chr4.2:73147612-73147631 | MS.gene043077:CDS | 35.0% | |
GTTGATTGACCACAATTTGA+AGG | - | chr4.2:73147654-73147673 | MS.gene043077:CDS | 35.0% | |
TCATTGTCAATGATGTTGCA+AGG | - | chr4.2:73147260-73147279 | MS.gene043077:CDS | 35.0% | |
TGCAACATCATTGACAATGA+AGG | + | chr4.2:73147260-73147279 | None:intergenic | 35.0% | |
TGGATATGAGTTATGTTGCT+TGG | - | chr4.2:73147632-73147651 | MS.gene043077:CDS | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.2:73147489-73147508 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.2:73147873-73147892 | MS.gene043077:CDS | 35.0% |
!! | TGAATTTTGAGAGCACAGAT+TGG | + | chr4.2:73147426-73147445 | None:intergenic | 35.0% |
AAACCAAGTCCAACTCGAAA+TGG | - | chr4.2:73147738-73147757 | MS.gene043077:CDS | 40.0% | |
AGCATCTAGGAGTGAAGAAA+TGG | - | chr4.2:73147789-73147808 | MS.gene043077:CDS | 40.0% | |
CTCATAAGGTCCATACACTA+TGG | + | chr4.2:73147368-73147387 | None:intergenic | 40.0% | |
GAAATGGCAATTATGGGTCA+TGG | - | chr4.2:73147805-73147824 | MS.gene043077:CDS | 40.0% | |
GAAGGATGTTAGTAGACGTT+TGG | - | chr4.2:73147672-73147691 | MS.gene043077:CDS | 40.0% | |
TCAATTTCTCTTCAGCCTTC+AGG | + | chr4.2:73147516-73147535 | None:intergenic | 40.0% | |
TTAGTAGACGTTTGGAAGCA+TGG | - | chr4.2:73147680-73147699 | MS.gene043077:CDS | 40.0% | |
! | TAGTAGACGTTTGGAAGCAT+GGG | - | chr4.2:73147681-73147700 | MS.gene043077:CDS | 40.0% |
AAAGGCTTCAATGCCACAGA+GGG | + | chr4.2:73147344-73147363 | None:intergenic | 45.0% | |
AGGTCCATACACTATGGCAA+AGG | + | chr4.2:73147362-73147381 | None:intergenic | 45.0% | |
ATGAGCCTCAACCTGAGATT+TGG | - | chr4.2:73147383-73147402 | MS.gene043077:CDS | 45.0% | |
ATTATGGGTCATGGCCATGT+TGG | - | chr4.2:73147814-73147833 | MS.gene043077:CDS | 45.0% | |
CCAGAATTGACCTCACCAAA+TGG | + | chr4.2:73147922-73147941 | None:intergenic | 45.0% | |
GAAGCCTTTGCCATAGTGTA+TGG | - | chr4.2:73147355-73147374 | MS.gene043077:CDS | 45.0% | |
GTGAGGTCAATTCTGGACTT+TGG | - | chr4.2:73147926-73147945 | MS.gene043077:CDS | 45.0% | |
TCTGGTAAAGGCCAAATCTC+AGG | + | chr4.2:73147397-73147416 | None:intergenic | 45.0% | |
TTATGGGTCATGGCCATGTT+GGG | - | chr4.2:73147815-73147834 | MS.gene043077:CDS | 45.0% | |
! | AAAGGCCAAATCTCAGGTTG+AGG | + | chr4.2:73147391-73147410 | None:intergenic | 45.0% |
! | CCATTTGGTGAGGTCAATTC+TGG | - | chr4.2:73147919-73147938 | MS.gene043077:CDS | 45.0% |
! | GAGATTTGGCCTTTACCAGA+GGG | - | chr4.2:73147397-73147416 | MS.gene043077:CDS | 45.0% |
! | TGAGATTTGGCCTTTACCAG+AGG | - | chr4.2:73147396-73147415 | MS.gene043077:CDS | 45.0% |
! | TTGTTGTCGCCATTTCGAGT+TGG | + | chr4.2:73147750-73147769 | None:intergenic | 45.0% |
!! | ATCTCAGGTTGAGGCTCATA+AGG | + | chr4.2:73147382-73147401 | None:intergenic | 45.0% |
CAAAGGCTTCAATGCCACAG+AGG | + | chr4.2:73147345-73147364 | None:intergenic | 50.0% | |
CACCACTTCTAGCAGCATCT+AGG | - | chr4.2:73147776-73147795 | MS.gene043077:CDS | 50.0% | |
CTAGATGCTGCTAGAAGTGG+TGG | + | chr4.2:73147778-73147797 | None:intergenic | 50.0% | |
CTCCTAGATGCTGCTAGAAG+TGG | + | chr4.2:73147781-73147800 | None:intergenic | 50.0% | |
CTTGACACAAAGGGTCCTGA+AGG | - | chr4.2:73147498-73147517 | MS.gene043077:CDS | 50.0% | |
GATTGGACACCCTCTGGTAA+AGG | + | chr4.2:73147409-73147428 | None:intergenic | 50.0% | |
! | GTGCAAGAGACAGTGCCATT+TGG | - | chr4.2:73147904-73147923 | MS.gene043077:CDS | 50.0% |
!! | AGAGACAGTGCCATTTGGTG+AGG | - | chr4.2:73147909-73147928 | MS.gene043077:CDS | 50.0% |
!! | TCGCCATTTCGAGTTGGACT+TGG | + | chr4.2:73147744-73147763 | None:intergenic | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.2:73147877-73147896 | MS.gene043077:CDS | 50.0% |
AGCACAGATTGGACACCCTC+TGG | + | chr4.2:73147415-73147434 | None:intergenic | 55.0% | |
GATGCTGCTAGAAGTGGTGG+TGG | + | chr4.2:73147775-73147794 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+TGG | - | chr4.2:73147328-73147347 | MS.gene043077:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 73147229 | 73147966 | 73147229 | ID=MS.gene043077 |
chr4.2 | mRNA | 73147229 | 73147966 | 73147229 | ID=MS.gene043077.t1;Parent=MS.gene043077 |
chr4.2 | exon | 73147229 | 73147966 | 73147229 | ID=MS.gene043077.t1.exon1;Parent=MS.gene043077.t1 |
chr4.2 | CDS | 73147229 | 73147966 | 73147229 | ID=cds.MS.gene043077.t1;Parent=MS.gene043077.t1 |
Gene Sequence |
Protein sequence |