Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043078.t1 | XP_003605494.2 | 70.9 | 244 | 36 | 2 | 1 | 222 | 1 | 231 | 1.60E-87 | 332.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043078.t1 | Q9FJK3 | 53.9 | 154 | 70 | 1 | 1 | 154 | 1 | 153 | 6.9e-39 | 162.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043078.t1 | G7JN54 | 70.9 | 244 | 36 | 2 | 1 | 222 | 1 | 231 | 1.1e-87 | 332.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene043078.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043078.t1 | MTR_4g031910 | 73.077 | 234 | 46 | 2 | 1 | 222 | 1 | 229 | 1.90e-114 | 326 |
MS.gene043078.t1 | MTR_4g032290 | 70.902 | 244 | 36 | 2 | 1 | 222 | 1 | 231 | 2.78e-111 | 318 |
MS.gene043078.t1 | MTR_4g032620 | 58.442 | 231 | 87 | 1 | 1 | 222 | 1 | 231 | 2.40e-96 | 280 |
MS.gene043078.t1 | MTR_8g036130 | 58.300 | 247 | 78 | 4 | 1 | 222 | 1 | 247 | 1.00e-90 | 267 |
MS.gene043078.t1 | MTR_4g032260 | 80.892 | 157 | 30 | 0 | 1 | 157 | 1 | 157 | 6.92e-83 | 244 |
MS.gene043078.t1 | MTR_3g065100 | 48.133 | 241 | 100 | 4 | 1 | 219 | 1 | 238 | 1.14e-63 | 198 |
MS.gene043078.t1 | MTR_3g466980 | 45.133 | 226 | 110 | 3 | 1 | 222 | 1 | 216 | 1.33e-61 | 192 |
MS.gene043078.t1 | MTR_2g035610 | 72.131 | 122 | 34 | 0 | 1 | 122 | 1 | 122 | 5.32e-51 | 161 |
MS.gene043078.t1 | MTR_4g032270 | 57.664 | 137 | 43 | 2 | 94 | 222 | 2 | 131 | 4.82e-47 | 152 |
MS.gene043078.t1 | MTR_5g075380 | 46.452 | 155 | 82 | 1 | 1 | 155 | 1 | 154 | 2.28e-45 | 149 |
MS.gene043078.t1 | MTR_4g063790 | 44.805 | 154 | 85 | 0 | 1 | 154 | 1 | 154 | 3.96e-45 | 148 |
MS.gene043078.t1 | MTR_3g466830 | 47.020 | 151 | 79 | 1 | 3 | 153 | 2 | 151 | 8.21e-45 | 147 |
MS.gene043078.t1 | MTR_3g467080 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 6.23e-43 | 142 |
MS.gene043078.t1 | MTR_3g031100 | 35.545 | 211 | 128 | 3 | 1 | 206 | 1 | 208 | 7.81e-41 | 139 |
MS.gene043078.t1 | MTR_2g016210 | 39.548 | 177 | 106 | 1 | 1 | 176 | 1 | 177 | 1.42e-40 | 139 |
MS.gene043078.t1 | MTR_5g047580 | 44.231 | 156 | 85 | 2 | 1 | 156 | 1 | 154 | 1.79e-40 | 136 |
MS.gene043078.t1 | MTR_3g466890 | 44.079 | 152 | 84 | 1 | 3 | 154 | 2 | 152 | 2.29e-39 | 133 |
MS.gene043078.t1 | MTR_1g077390 | 41.401 | 157 | 88 | 3 | 1 | 156 | 1 | 154 | 1.77e-38 | 131 |
MS.gene043078.t1 | MTR_3g465410 | 44.444 | 126 | 70 | 0 | 29 | 154 | 1 | 126 | 4.91e-35 | 121 |
MS.gene043078.t1 | MTR_1g077320 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 8.14e-35 | 121 |
MS.gene043078.t1 | MTR_1g090783 | 39.610 | 154 | 91 | 2 | 3 | 156 | 2 | 153 | 1.44e-34 | 120 |
MS.gene043078.t1 | MTR_7g011950 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 2.08e-34 | 120 |
MS.gene043078.t1 | MTR_1g090710 | 38.312 | 154 | 94 | 1 | 1 | 154 | 1 | 153 | 1.19e-33 | 118 |
MS.gene043078.t1 | MTR_4g028720 | 42.308 | 156 | 88 | 2 | 1 | 156 | 1 | 154 | 2.68e-33 | 117 |
MS.gene043078.t1 | MTR_1g090697 | 40.000 | 150 | 88 | 2 | 1 | 150 | 1 | 148 | 4.17e-33 | 117 |
MS.gene043078.t1 | MTR_1g077300 | 42.949 | 156 | 85 | 2 | 1 | 156 | 1 | 152 | 5.93e-33 | 117 |
MS.gene043078.t1 | MTR_1g084950 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 1.66e-32 | 115 |
MS.gene043078.t1 | MTR_4g028800 | 77.143 | 70 | 14 | 1 | 1 | 70 | 1 | 68 | 5.05e-32 | 112 |
MS.gene043078.t1 | MTR_7g055800 | 52.137 | 117 | 28 | 2 | 1 | 117 | 1 | 89 | 9.27e-31 | 109 |
MS.gene043078.t1 | MTR_3g031240 | 33.333 | 156 | 104 | 0 | 1 | 156 | 1 | 156 | 5.22e-30 | 110 |
MS.gene043078.t1 | MTR_3g466900 | 39.837 | 123 | 73 | 1 | 32 | 154 | 2 | 123 | 6.54e-28 | 103 |
MS.gene043078.t1 | MTR_7g055790 | 54.054 | 111 | 33 | 1 | 1 | 111 | 59 | 151 | 1.97e-27 | 102 |
MS.gene043078.t1 | MTR_3g466930 | 37.398 | 123 | 76 | 1 | 32 | 154 | 2 | 123 | 1.67e-25 | 97.1 |
MS.gene043078.t1 | MTR_2g035580 | 36.306 | 157 | 99 | 1 | 1 | 157 | 1 | 156 | 2.52e-25 | 97.4 |
MS.gene043078.t1 | MTR_7g055940 | 50.943 | 106 | 24 | 2 | 1 | 106 | 1 | 78 | 2.91e-25 | 94.7 |
MS.gene043078.t1 | MTR_7g106510 | 39.370 | 127 | 77 | 0 | 3 | 129 | 6 | 132 | 9.51e-25 | 101 |
MS.gene043078.t1 | MTR_4g019670 | 39.370 | 127 | 77 | 0 | 3 | 129 | 6 | 132 | 3.50e-24 | 100 |
MS.gene043078.t1 | MTR_3g093900 | 32.394 | 142 | 96 | 0 | 3 | 144 | 6 | 147 | 1.67e-22 | 95.5 |
MS.gene043078.t1 | MTR_5g047560 | 35.032 | 157 | 82 | 4 | 1 | 156 | 1 | 138 | 3.23e-22 | 88.6 |
MS.gene043078.t1 | MTR_2g035590 | 59.259 | 81 | 33 | 0 | 74 | 154 | 1 | 81 | 1.92e-19 | 80.1 |
MS.gene043078.t1 | MTR_6g018920 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 1.79e-13 | 68.6 |
MS.gene043078.t1 | MTR_6g005450 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 2.20e-13 | 68.6 |
MS.gene043078.t1 | MTR_1g114730 | 32.743 | 113 | 69 | 3 | 1 | 107 | 1 | 112 | 4.36e-13 | 67.8 |
MS.gene043078.t1 | MTR_4g084780 | 37.838 | 111 | 53 | 2 | 74 | 168 | 1 | 111 | 1.29e-11 | 60.8 |
MS.gene043078.t1 | MTR_6g005440 | 36.283 | 113 | 65 | 4 | 1 | 107 | 1 | 112 | 3.36e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043078.t1 | AT5G48670 | 53.896 | 154 | 70 | 1 | 1 | 154 | 1 | 153 | 1.96e-45 | 154 |
MS.gene043078.t1 | AT1G65300 | 42.262 | 168 | 87 | 2 | 3 | 161 | 2 | 168 | 5.06e-41 | 141 |
MS.gene043078.t1 | AT5G26630 | 42.439 | 205 | 107 | 2 | 1 | 195 | 1 | 204 | 1.14e-40 | 138 |
MS.gene043078.t1 | AT1G65330 | 42.857 | 168 | 88 | 2 | 3 | 163 | 2 | 168 | 1.04e-39 | 138 |
MS.gene043078.t1 | AT5G26650 | 42.763 | 152 | 86 | 1 | 5 | 156 | 3 | 153 | 2.29e-36 | 131 |
MS.gene043078.t1 | AT5G27960 | 42.105 | 152 | 87 | 1 | 5 | 156 | 3 | 153 | 1.08e-35 | 128 |
MS.gene043078.t1 | AT1G31630 | 36.905 | 168 | 97 | 3 | 3 | 163 | 2 | 167 | 4.15e-35 | 127 |
MS.gene043078.t1 | AT1G31640 | 38.411 | 151 | 91 | 2 | 3 | 153 | 2 | 150 | 1.21e-31 | 120 |
MS.gene043078.t1 | AT2G28700 | 36.158 | 177 | 108 | 2 | 1 | 175 | 1 | 174 | 4.25e-31 | 116 |
MS.gene043078.t1 | AT5G27810 | 54.839 | 93 | 42 | 0 | 29 | 121 | 1 | 93 | 6.52e-31 | 110 |
MS.gene043078.t1 | AT3G05860 | 36.076 | 158 | 100 | 1 | 1 | 158 | 1 | 157 | 1.85e-30 | 112 |
MS.gene043078.t1 | AT3G05860 | 36.076 | 158 | 100 | 1 | 1 | 158 | 1 | 157 | 5.56e-30 | 112 |
MS.gene043078.t1 | AT3G05860 | 36.076 | 158 | 100 | 1 | 1 | 158 | 1 | 157 | 6.73e-30 | 112 |
MS.gene043078.t1 | AT1G22590 | 31.481 | 162 | 107 | 1 | 1 | 162 | 1 | 158 | 1.20e-25 | 98.2 |
MS.gene043078.t1 | AT5G26580 | 35.065 | 154 | 85 | 2 | 1 | 154 | 1 | 139 | 6.24e-25 | 100 |
MS.gene043078.t1 | AT5G06500 | 34.395 | 157 | 101 | 2 | 1 | 157 | 1 | 155 | 2.91e-21 | 89.0 |
MS.gene043078.t1 | AT2G40210 | 35.802 | 162 | 101 | 2 | 1 | 162 | 1 | 159 | 1.51e-19 | 86.3 |
MS.gene043078.t1 | AT5G58890 | 38.583 | 127 | 67 | 5 | 6 | 123 | 6 | 130 | 1.82e-16 | 76.6 |
MS.gene043078.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.72e-13 | 68.2 |
MS.gene043078.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.72e-13 | 68.2 |
MS.gene043078.t1 | AT2G15660 | 30.088 | 113 | 74 | 2 | 38 | 150 | 31 | 138 | 3.16e-11 | 61.6 |
Find 61 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCTTCAAGGTAGTAAATT+AGG | 0.161446 | 4.2:+73110055 | None:intergenic |
AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | 4.2:-73110402 | MS.gene043078:CDS |
CCCTTTGGTGAGATCAATTC+TGG | 0.238779 | 4.2:-73110085 | MS.gene043078:CDS |
GAGCGAAGAAATGGCAATTA+TGG | 0.251384 | 4.2:-73110206 | MS.gene043078:CDS |
TACCAATGTCCTTCAAATTA+TGG | 0.254451 | 4.2:+73110275 | None:intergenic |
AAGAAAGGGTCTATTGAAAA+AGG | 0.312767 | 4.2:-73110635 | MS.gene043078:CDS |
ATCTCTGGCTGAGGCTCATA+AGG | 0.350996 | 4.2:+73110559 | None:intergenic |
AAAATGTCATCACCATTAAT+AGG | 0.355958 | 4.2:+73110163 | None:intergenic |
ATGAGCCTCAGCCAGAGATT+TGG | 0.374512 | 4.2:-73110555 | MS.gene043078:CDS |
TTTGCAAAGTCAATTATTGA+TGG | 0.379269 | 4.2:-73110143 | MS.gene043078:CDS |
GCCCTAATTTACTACCTTGA+AGG | 0.380748 | 4.2:-73110057 | None:intergenic |
TCCTTCAAGGTAGTAAATTA+GGG | 0.396741 | 4.2:+73110056 | None:intergenic |
GAAGGACATTGGTAGACGTT+TGG | 0.410243 | 4.2:-73110266 | MS.gene043078:CDS |
TCTGGTGAAGGCCAAATCTC+TGG | 0.413104 | 4.2:+73110544 | None:intergenic |
GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | 4.2:-73110401 | MS.gene043078:CDS |
AGCGAAGAAATGGCAATTAT+GGG | 0.425600 | 4.2:-73110205 | MS.gene043078:CDS |
AGCATCTAGGAGCGAAGAAA+TGG | 0.428793 | 4.2:-73110215 | MS.gene043078:CDS |
GTTGATTGACCATAATTTGA+AGG | 0.445081 | 4.2:-73110284 | MS.gene043078:CDS |
GATGCTGCTGGAGGTGGTAG+TGG | 0.453710 | 4.2:+73110232 | None:intergenic |
CTCCTAGATGCTGCTGGAGG+TGG | 0.459401 | 4.2:+73110226 | None:intergenic |
CACAACCATGGCTAGAAGTA+AGG | 0.461347 | 4.2:-73110713 | None:intergenic |
CTCATAAGGGCCATACACTA+TGG | 0.468858 | 4.2:+73110573 | None:intergenic |
ATCATACAAGAAAAGAAGAA+AGG | 0.473094 | 4.2:-73110650 | MS.gene043078:CDS |
CTTGACACAAAGGGTTCTGA+AGG | 0.478789 | 4.2:-73110440 | MS.gene043078:CDS |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.2:-73110134 | MS.gene043078:CDS |
TTGATTTGAGTTATCTTACT+TGG | 0.482489 | 4.2:-73110306 | MS.gene043078:CDS |
CATGTTGGGATACCTATTAA+TGG | 0.485702 | 4.2:-73110175 | MS.gene043078:CDS |
TCTTCGCTCCTAGATGCTGC+TGG | 0.487238 | 4.2:+73110220 | None:intergenic |
TTATGGGTCATGGACATGTT+GGG | 0.500968 | 4.2:-73110189 | MS.gene043078:CDS |
TGCGGCATCATTGACAATGA+AGG | 0.507200 | 4.2:+73110681 | None:intergenic |
ATTATGGGTCATGGACATGT+TGG | 0.516074 | 4.2:-73110190 | MS.gene043078:CDS |
AGAGACTTTCTTGACACAAA+GGG | 0.517022 | 4.2:-73110449 | MS.gene043078:CDS |
GACCATAATTTGAAGGACAT+TGG | 0.517963 | 4.2:-73110277 | MS.gene043078:CDS |
GAAATGGCAATTATGGGTCA+TGG | 0.521926 | 4.2:-73110199 | MS.gene043078:CDS |
GGACATTGGTAGACGTTTGG+CGG | 0.524285 | 4.2:-73110263 | MS.gene043078:CDS |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | 4.2:+73110452 | None:intergenic |
TCATACAAGAAAAGAAGAAA+GGG | 0.526600 | 4.2:-73110649 | MS.gene043078:CDS |
TTTAACCTTACTTCTAGCCA+TGG | 0.533701 | 4.2:+73110708 | None:intergenic |
TACCACCTCCAGCAGCATCT+AGG | 0.540428 | 4.2:-73110228 | MS.gene043078:CDS |
ATATCTCATTGTCTCAATGA+AGG | 0.546787 | 4.2:-73110358 | MS.gene043078:CDS |
CCAGAATTGATCTCACCAAA+GGG | 0.554343 | 4.2:+73110085 | None:intergenic |
GTGCAAGAGACAGTGCCCTT+TGG | 0.557727 | 4.2:-73110100 | MS.gene043078:CDS |
GAAGCCTGTGCCATAGTGTA+TGG | 0.559714 | 4.2:-73110583 | MS.gene043078:CDS |
GAAGGCCAAATCTCTGGCTG+AGG | 0.560020 | 4.2:+73110550 | None:intergenic |
TCTCTGGCTGAGGCTCATAA+GGG | 0.571102 | 4.2:+73110560 | None:intergenic |
GAGATTTGGCCTTCACCAGA+GGG | 0.580805 | 4.2:-73110541 | MS.gene043078:CDS |
TCCAGAATTGATCTCACCAA+AGG | 0.590517 | 4.2:+73110084 | None:intergenic |
ACAGGCTTCAATGCCACAGA+GGG | 0.601811 | 4.2:+73110597 | None:intergenic |
GATTTGGCCTTCACCAGAGG+GGG | 0.601928 | 4.2:-73110539 | MS.gene043078:CDS |
CTTGTATGATTCTTTCCTTG+CGG | 0.605657 | 4.2:+73110663 | None:intergenic |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.2:-73110127 | MS.gene043078:CDS |
AAGAGACTTTCTTGACACAA+AGG | 0.607804 | 4.2:-73110450 | MS.gene043078:CDS |
AGAGATTTGGCCTTCACCAG+AGG | 0.617598 | 4.2:-73110542 | MS.gene043078:CDS |
AGGGCCATACACTATGGCAC+AGG | 0.641363 | 4.2:+73110579 | None:intergenic |
TCATTGTCAATGATGCCGCA+AGG | 0.664783 | 4.2:-73110678 | MS.gene043078:CDS |
ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4.2:-73110131 | MS.gene043078:CDS |
TCGCTCCTAGATGCTGCTGG+AGG | 0.676090 | 4.2:+73110223 | None:intergenic |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.2:-73110610 | MS.gene043078:CDS |
TGTGCACGACAATATGTCAA+CGG | 0.688304 | 4.2:-73110329 | MS.gene043078:CDS |
CACAGGCTTCAATGCCACAG+AGG | 0.696692 | 4.2:+73110596 | None:intergenic |
AGATTTGGCCTTCACCAGAG+GGG | 0.703414 | 4.2:-73110540 | MS.gene043078:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAACAAAGAAAAGAAAAT+AGG | - | chr4.2:73110364-73110383 | MS.gene043078:CDS | 20.0% |
!! | GAAACAAAGAAAAGAAAATA+GGG | - | chr4.2:73110365-73110384 | MS.gene043078:CDS | 20.0% |
! | AAAATGTCATCACCATTAAT+AGG | + | chr4.2:73110606-73110625 | None:intergenic | 25.0% |
! | ATCATACAAGAAAAGAAGAA+AGG | - | chr4.2:73110116-73110135 | MS.gene043078:CDS | 25.0% |
! | TCATACAAGAAAAGAAGAAA+GGG | - | chr4.2:73110117-73110136 | MS.gene043078:CDS | 25.0% |
! | TTTGCAAAGTCAATTATTGA+TGG | - | chr4.2:73110623-73110642 | MS.gene043078:CDS | 25.0% |
!! | TTGATTTGAGTTATCTTACT+TGG | - | chr4.2:73110460-73110479 | MS.gene043078:CDS | 25.0% |
AAGAAAGGGTCTATTGAAAA+AGG | - | chr4.2:73110131-73110150 | MS.gene043078:CDS | 30.0% | |
ATATCTCATTGTCTCAATGA+AGG | - | chr4.2:73110408-73110427 | MS.gene043078:CDS | 30.0% | |
GTTGATTGACCATAATTTGA+AGG | - | chr4.2:73110482-73110501 | MS.gene043078:CDS | 30.0% | |
TACCAATGTCCTTCAAATTA+TGG | + | chr4.2:73110494-73110513 | None:intergenic | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.2:73110632-73110651 | MS.gene043078:CDS | 30.0% |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.2:73110316-73110335 | MS.gene043078:CDS | 35.0% | |
AGAGACTTTCTTGACACAAA+GGG | - | chr4.2:73110317-73110336 | MS.gene043078:CDS | 35.0% | |
AGCGAAGAAATGGCAATTAT+GGG | - | chr4.2:73110561-73110580 | MS.gene043078:CDS | 35.0% | |
CATGTTGGGATACCTATTAA+TGG | - | chr4.2:73110591-73110610 | MS.gene043078:CDS | 35.0% | |
CTTGTATGATTCTTTCCTTG+CGG | + | chr4.2:73110106-73110125 | None:intergenic | 35.0% | |
GACCATAATTTGAAGGACAT+TGG | - | chr4.2:73110489-73110508 | MS.gene043078:CDS | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.2:73110317-73110336 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.2:73110635-73110654 | MS.gene043078:CDS | 35.0% |
ATTATGGGTCATGGACATGT+TGG | - | chr4.2:73110576-73110595 | MS.gene043078:CDS | 40.0% | |
CCAGAATTGATCTCACCAAA+GGG | + | chr4.2:73110684-73110703 | None:intergenic | 40.0% | |
GAAATGGCAATTATGGGTCA+TGG | - | chr4.2:73110567-73110586 | MS.gene043078:CDS | 40.0% | |
GAGCGAAGAAATGGCAATTA+TGG | - | chr4.2:73110560-73110579 | MS.gene043078:CDS | 40.0% | |
TCCAGAATTGATCTCACCAA+AGG | + | chr4.2:73110685-73110704 | None:intergenic | 40.0% | |
TGTGCACGACAATATGTCAA+CGG | - | chr4.2:73110437-73110456 | MS.gene043078:CDS | 40.0% | |
TTATGGGTCATGGACATGTT+GGG | - | chr4.2:73110577-73110596 | MS.gene043078:CDS | 40.0% | |
!! | CGTCATGAATTTTGAGAGCA+CGG | + | chr4.2:73110259-73110278 | None:intergenic | 40.0% |
!! | TGAATTTTGAGAGCACGGAT+TGG | + | chr4.2:73110254-73110273 | None:intergenic | 40.0% |
AGCATCTAGGAGCGAAGAAA+TGG | - | chr4.2:73110551-73110570 | MS.gene043078:CDS | 45.0% | |
CCCTTTGGTGAGATCAATTC+TGG | - | chr4.2:73110681-73110700 | MS.gene043078:CDS | 45.0% | |
CTCATAAGGGCCATACACTA+TGG | + | chr4.2:73110196-73110215 | None:intergenic | 45.0% | |
GAAGGACATTGGTAGACGTT+TGG | - | chr4.2:73110500-73110519 | MS.gene043078:CDS | 45.0% | |
TCATTGTCAATGATGCCGCA+AGG | - | chr4.2:73110088-73110107 | MS.gene043078:CDS | 45.0% | |
TGCGGCATCATTGACAATGA+AGG | + | chr4.2:73110088-73110107 | None:intergenic | 45.0% | |
! | CTTGACACAAAGGGTTCTGA+AGG | - | chr4.2:73110326-73110345 | MS.gene043078:CDS | 45.0% |
ACAGGCTTCAATGCCACAGA+GGG | + | chr4.2:73110172-73110191 | None:intergenic | 50.0% | |
ATCTCTGGCTGAGGCTCATA+AGG | + | chr4.2:73110210-73110229 | None:intergenic | 50.0% | |
ATGAGCCTCAGCCAGAGATT+TGG | - | chr4.2:73110211-73110230 | MS.gene043078:CDS | 50.0% | |
GAAGCCTGTGCCATAGTGTA+TGG | - | chr4.2:73110183-73110202 | MS.gene043078:CDS | 50.0% | |
GGACATTGGTAGACGTTTGG+CGG | - | chr4.2:73110503-73110522 | MS.gene043078:CDS | 50.0% | |
TCTCTGGCTGAGGCTCATAA+GGG | + | chr4.2:73110209-73110228 | None:intergenic | 50.0% | |
TCTGGTGAAGGCCAAATCTC+TGG | + | chr4.2:73110225-73110244 | None:intergenic | 50.0% | |
! | AGAGATTTGGCCTTCACCAG+AGG | - | chr4.2:73110224-73110243 | MS.gene043078:CDS | 50.0% |
! | AGATTTGGCCTTCACCAGAG+GGG | - | chr4.2:73110226-73110245 | MS.gene043078:CDS | 50.0% |
! | GAGATTTGGCCTTCACCAGA+GGG | - | chr4.2:73110225-73110244 | MS.gene043078:CDS | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.2:73110639-73110658 | MS.gene043078:CDS | 50.0% |
AGGGCCATACACTATGGCAC+AGG | + | chr4.2:73110190-73110209 | None:intergenic | 55.0% | |
CACAGGCTTCAATGCCACAG+AGG | + | chr4.2:73110173-73110192 | None:intergenic | 55.0% | |
GAAGGCCAAATCTCTGGCTG+AGG | + | chr4.2:73110219-73110238 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+TGG | - | chr4.2:73110156-73110175 | MS.gene043078:CDS | 55.0% | |
GTGCAAGAGACAGTGCCCTT+TGG | - | chr4.2:73110666-73110685 | MS.gene043078:CDS | 55.0% | |
TACCACCTCCAGCAGCATCT+AGG | - | chr4.2:73110538-73110557 | MS.gene043078:CDS | 55.0% | |
TCTTCGCTCCTAGATGCTGC+TGG | + | chr4.2:73110549-73110568 | None:intergenic | 55.0% | |
! | GATTTGGCCTTCACCAGAGG+GGG | - | chr4.2:73110227-73110246 | MS.gene043078:CDS | 55.0% |
CTCCTAGATGCTGCTGGAGG+TGG | + | chr4.2:73110543-73110562 | None:intergenic | 60.0% | |
GATGCTGCTGGAGGTGGTAG+TGG | + | chr4.2:73110537-73110556 | None:intergenic | 60.0% | |
GATTGGACCCCCTCTGGTGA+AGG | + | chr4.2:73110237-73110256 | None:intergenic | 60.0% | |
TCGCTCCTAGATGCTGCTGG+AGG | + | chr4.2:73110546-73110565 | None:intergenic | 60.0% | |
!! | AGCACGGATTGGACCCCCTC+TGG | + | chr4.2:73110243-73110262 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 73110060 | 73110728 | 73110060 | ID=MS.gene043078 |
chr4.2 | mRNA | 73110060 | 73110728 | 73110060 | ID=MS.gene043078.t1;Parent=MS.gene043078 |
chr4.2 | exon | 73110060 | 73110728 | 73110060 | ID=MS.gene043078.t1.exon1;Parent=MS.gene043078.t1 |
chr4.2 | CDS | 73110060 | 73110728 | 73110060 | ID=cds.MS.gene043078.t1;Parent=MS.gene043078.t1 |
Gene Sequence |
Protein sequence |