Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04312.t1 | XP_027354476.1 | 56.8 | 146 | 41 | 1 | 28 | 151 | 188 | 333 | 5.10E-33 | 151.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04312.t1 | Q5Z4U5 | 40.7 | 91 | 39 | 2 | 26 | 114 | 251 | 328 | 1.4e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04312.t1 | A0A2K3MP93 | 44.6 | 249 | 96 | 7 | 13 | 225 | 3 | 245 | 7.0e-32 | 147.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04312.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04312.t1 | MTR_3g060200 | 39.179 | 268 | 109 | 7 | 11 | 225 | 10 | 276 | 7.28e-42 | 147 |
| MS.gene04312.t1 | MTR_3g060200 | 40.678 | 236 | 60 | 5 | 11 | 225 | 10 | 186 | 4.41e-40 | 140 |
| MS.gene04312.t1 | MTR_3g100040 | 55.147 | 136 | 39 | 1 | 25 | 138 | 91 | 226 | 1.51e-38 | 134 |
| MS.gene04312.t1 | MTR_3g100040 | 55.147 | 136 | 39 | 1 | 25 | 138 | 195 | 330 | 1.23e-37 | 134 |
| MS.gene04312.t1 | MTR_3g060200 | 37.766 | 188 | 82 | 4 | 11 | 164 | 10 | 196 | 4.55e-25 | 101 |
| MS.gene04312.t1 | MTR_3g060200 | 37.234 | 188 | 83 | 4 | 11 | 164 | 10 | 196 | 1.21e-24 | 101 |
| MS.gene04312.t1 | MTR_3g060200 | 40.116 | 172 | 61 | 6 | 61 | 225 | 259 | 395 | 2.81e-22 | 94.7 |
| MS.gene04312.t1 | MTR_4g093730 | 38.596 | 114 | 54 | 4 | 30 | 128 | 175 | 287 | 5.45e-15 | 73.2 |
| MS.gene04312.t1 | MTR_3g100050 | 36.842 | 114 | 65 | 4 | 32 | 143 | 200 | 308 | 9.66e-13 | 66.6 |
| MS.gene04312.t1 | MTR_5g066510 | 40.964 | 83 | 42 | 2 | 32 | 111 | 203 | 281 | 9.97e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04312.t1 | AT1G51600 | 62.791 | 43 | 16 | 0 | 32 | 74 | 223 | 265 | 9.30e-13 | 66.6 |
| MS.gene04312.t1 | AT1G51600 | 62.791 | 43 | 16 | 0 | 32 | 74 | 223 | 265 | 9.30e-13 | 66.6 |
| MS.gene04312.t1 | AT3G21175 | 62.791 | 43 | 16 | 0 | 32 | 74 | 217 | 259 | 7.73e-12 | 63.9 |
| MS.gene04312.t1 | AT3G21175 | 62.791 | 43 | 16 | 0 | 32 | 74 | 219 | 261 | 7.99e-12 | 63.9 |
| MS.gene04312.t1 | AT4G24470 | 43.056 | 72 | 36 | 1 | 32 | 103 | 214 | 280 | 8.74e-12 | 63.9 |
| MS.gene04312.t1 | AT4G24470 | 43.056 | 72 | 36 | 1 | 32 | 103 | 214 | 280 | 8.74e-12 | 63.9 |
| MS.gene04312.t1 | AT4G24470 | 56.818 | 44 | 19 | 0 | 32 | 75 | 214 | 257 | 3.00e-11 | 62.4 |
Find 57 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCGTCACGTGGGCCAAAA+AGG | 0.305959 | 3.4:+56106417 | MS.gene04312:CDS |
| GTTGGGTGTTCTGAAGATTC+AGG | 0.307891 | 3.4:-56110431 | None:intergenic |
| AAGCGTTTAAACTGCCTATC+AGG | 0.314872 | 3.4:-56106188 | None:intergenic |
| GTTGGGTGTTCTGAAGATTC+AGG | 0.326610 | 3.4:-56108326 | None:intergenic |
| TTTAAAACTACCTCTTCAAC+GGG | 0.359063 | 3.4:-56108180 | None:intergenic |
| ACCTTCAGTAGTTGTGGCCT+TGG | 0.379149 | 3.4:-56110250 | None:intergenic |
| CAAATGCGTCCCGGGCCAGC+TGG | 0.413545 | 3.4:+56106370 | MS.gene04312:CDS |
| CCAACAAACACTCTACCATT+AGG | 0.432811 | 3.4:+56108344 | MS.gene04312:CDS |
| AGTAAATCTTCCAGCTGGCC+CGG | 0.440593 | 3.4:-56106380 | None:intergenic |
| TTCTGTTGATCAAAGTGGTC+TGG | 0.446513 | 3.4:+56106959 | MS.gene04312:CDS |
| TGTGGCCTTGGAAGGATCTT+CGG | 0.456624 | 3.4:-56110238 | None:intergenic |
| TCCAAGCTCATTGTTGCCGA+TGG | 0.464599 | 3.4:+56108135 | MS.gene04312:CDS |
| GAAGAATGAACAATTCCTAA+TGG | 0.472907 | 3.4:-56108359 | None:intergenic |
| CATTCTTCAGAAAATGATGA+TGG | 0.478804 | 3.4:+56108374 | MS.gene04312:CDS |
| AAACGCTTCAAGAAGAGTCC+TGG | 0.478873 | 3.4:+56106203 | MS.gene04312:CDS |
| CTAACGGTAGAGTGTTTGTT+GGG | 0.480089 | 3.4:-56110448 | None:intergenic |
| CCTAACGGTAGAGTGTTTGT+TGG | 0.483122 | 3.4:-56110449 | None:intergenic |
| CTAATGGTAGAGTGTTTGTT+GGG | 0.483860 | 3.4:-56108343 | None:intergenic |
| AGGATGCTGCGTCACAAGGA+TGG | 0.484263 | 3.4:+56106143 | None:intergenic |
| TGCATTGAACCCTATTGAAA+AGG | 0.485054 | 3.4:+56110284 | MS.gene04312:CDS |
| CCTAATGGTAGAGTGTTTGT+TGG | 0.500474 | 3.4:-56108344 | None:intergenic |
| TTCAGAAAATGATGATGGAC+AGG | 0.501286 | 3.4:+56108379 | MS.gene04312:CDS |
| TCAGTAGTTGTGGCCTTGGA+AGG | 0.504019 | 3.4:-56110246 | None:intergenic |
| ATTTAAAACTACCTCTTCAA+CGG | 0.506639 | 3.4:-56108181 | None:intergenic |
| ACCATCGGCAACAATGAGCT+TGG | 0.511631 | 3.4:-56108136 | None:intergenic |
| AACACTTCTCAAATGCGTCC+CGG | 0.512353 | 3.4:+56106361 | MS.gene04312:CDS |
| TGCATGATTGTTCGAACCAT+CGG | 0.515819 | 3.4:-56108151 | None:intergenic |
| GCTTCAAGCGAAGTCCTGAT+AGG | 0.522695 | 3.4:+56106174 | MS.gene04312:CDS |
| TCGGCAACAATGAGCTTGGA+AGG | 0.523449 | 3.4:-56108132 | None:intergenic |
| GAAAACAAGTATCTCTTCAT+CGG | 0.527493 | 3.4:-56111946 | None:intergenic |
| ACACTTCTCAAATGCGTCCC+GGG | 0.528359 | 3.4:+56106362 | MS.gene04312:CDS |
| TTCAGAAAATGATAATGTCC+AGG | 0.532128 | 3.4:+56110484 | MS.gene04312:CDS |
| TGCTAGGATGCTGCGTCACA+AGG | 0.532793 | 3.4:+56106139 | None:intergenic |
| GGATGCTGCGTCACAAGGAT+GGG | 0.534910 | 3.4:+56106144 | None:intergenic |
| TGCATTGAACCCCGTTGAAG+AGG | 0.538463 | 3.4:+56108170 | MS.gene04312:CDS |
| GTAAATCTTCCAGCTGGCCC+GGG | 0.542997 | 3.4:-56106379 | None:intergenic |
| AGGACTTGCCATCTTTCTCG+TGG | 0.543354 | 3.4:+56112013 | MS.gene04312:CDS |
| CCAACAAACACTCTACCGTT+AGG | 0.550586 | 3.4:+56110449 | MS.gene04312:CDS |
| ACTCATTCTGTTGATCAAAG+TGG | 0.569763 | 3.4:+56106954 | MS.gene04312:CDS |
| TGGTCTACCCACGAGAAAGA+TGG | 0.581770 | 3.4:-56112021 | None:intergenic |
| ATTCGAACCTTCAGTAGTTG+TGG | 0.584866 | 3.4:-56110256 | None:intergenic |
| CATAGAGTAAATCTTCCAGC+TGG | 0.585448 | 3.4:-56106385 | None:intergenic |
| TCCAAGGCCACAACTACTGA+AGG | 0.589066 | 3.4:+56110249 | MS.gene04312:CDS |
| GGACTTGCCATCTTTCTCGT+GGG | 0.604909 | 3.4:+56112014 | MS.gene04312:CDS |
| TATTTCCGAAGATCCTTCCA+AGG | 0.605617 | 3.4:+56110233 | MS.gene04312:CDS |
| GTAATACATGCGGCGTCACG+TGG | 0.612083 | 3.4:+56106407 | MS.gene04312:CDS |
| TGCTGCGTCACAAGGATGGG+CGG | 0.620721 | 3.4:+56106147 | MS.gene04312:CDS |
| GAAGAATGATCAATTCCTAA+CGG | 0.628796 | 3.4:-56110464 | None:intergenic |
| AGACGTAGATGTCAACATTG+TGG | 0.642693 | 3.4:+56106325 | MS.gene04312:intron |
| CGGCAACAATGAGCTTGGAA+GGG | 0.643164 | 3.4:-56108131 | None:intergenic |
| AAGCAACTCAATCCGAGGTG+TGG | 0.648481 | 3.4:-56112041 | None:intergenic |
| TTTAAAACTCACAAAGAACC+AGG | 0.655376 | 3.4:-56106221 | None:intergenic |
| GGTGGAAGCAACTCAATCCG+AGG | 0.671801 | 3.4:-56112046 | None:intergenic |
| TTTACTCTATGTAATACATG+CGG | 0.695440 | 3.4:+56106397 | MS.gene04312:CDS |
| CTCGTGGGTAGACCACACCT+CGG | 0.695849 | 3.4:+56112029 | MS.gene04312:CDS |
| TAATACATGCGGCGTCACGT+GGG | 0.699536 | 3.4:+56106408 | MS.gene04312:CDS |
| TTAAAACTACCTCTTCAACG+GGG | 0.758088 | 3.4:-56108179 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTTGTTAATAAATAAAA+GGG | - | chr3.4:56107328-56107347 | None:intergenic | 10.0% |
| !! | TATAAAACAAAATATTCAAT+AGG | - | chr3.4:56108409-56108428 | None:intergenic | 10.0% |
| !! | TTACTTTGTTAATAAATAAA+AGG | - | chr3.4:56107329-56107348 | None:intergenic | 10.0% |
| !!! | TTTTTGTCTTTATTTTATAT+TGG | + | chr3.4:56108062-56108081 | MS.gene04312:intron | 10.0% |
| !! | AATATTATGTTTCTTGTTAA+AGG | - | chr3.4:56109638-56109657 | None:intergenic | 15.0% |
| !! | ATATTATGTTTCTTGTTAAA+GGG | - | chr3.4:56109637-56109656 | None:intergenic | 15.0% |
| !!! | AATTTGTTAAACACTTTAAT+TGG | - | chr3.4:56109212-56109231 | None:intergenic | 15.0% |
| !!! | ACCTAAAATAATCAATTTTA+GGG | + | chr3.4:56110784-56110803 | MS.gene04312:intron | 15.0% |
| !!! | ATGTTTTGTTTATTTTGATA+AGG | + | chr3.4:56111556-56111575 | MS.gene04312:intron | 15.0% |
| !!! | TATTTTTTAAATGAATTGAG+AGG | + | chr3.4:56108703-56108722 | MS.gene04312:intron | 15.0% |
| !!! | TTAAAAATACCTTTTCAATA+GGG | - | chr3.4:56110296-56110315 | None:intergenic | 15.0% |
| !!! | TTTAAAAATACCTTTTCAAT+AGG | - | chr3.4:56110297-56110316 | None:intergenic | 15.0% |
| !! | AAAAAAATTATGCTATGTTC+AGG | + | chr3.4:56108095-56108114 | MS.gene04312:intron | 20.0% |
| !! | AAAAAATAATGTTGAATGCA+AGG | - | chr3.4:56109978-56109997 | None:intergenic | 20.0% |
| !! | AAAAAATTATGCTATGTTCA+GGG | + | chr3.4:56108096-56108115 | MS.gene04312:intron | 20.0% |
| !! | AAAATAATGTTGAATGCAAA+TGG | - | chr3.4:56107917-56107936 | None:intergenic | 20.0% |
| !! | AACTCTACAAGTAATTAAAA+CGG | - | chr3.4:56108002-56108021 | None:intergenic | 20.0% |
| !! | ATCAACAAAACATAAATACA+AGG | - | chr3.4:56111915-56111934 | None:intergenic | 20.0% |
| !! | ATCGAATTTGAATAAACAAA+GGG | + | chr3.4:56111038-56111057 | MS.gene04312:intron | 20.0% |
| !! | CATAAAAATCTTATGAAAAC+CGG | - | chr3.4:56111753-56111772 | None:intergenic | 20.0% |
| !! | CATTATTATGCTTATAAACT+TGG | - | chr3.4:56110097-56110116 | None:intergenic | 20.0% |
| !! | CTATACAAGTTCAAATATTT+GGG | - | chr3.4:56109681-56109700 | None:intergenic | 20.0% |
| !! | GTTATTGTATATGTTTGTTT+CGG | + | chr3.4:56111881-56111900 | MS.gene04312:intron | 20.0% |
| !! | TAGAAGTAATTAAAATGGAA+AGG | - | chr3.4:56110061-56110080 | None:intergenic | 20.0% |
| !! | TATTATGTTTCTTGTTAAAG+GGG | - | chr3.4:56109636-56109655 | None:intergenic | 20.0% |
| !! | TCAACAAAACATAAATACAA+GGG | - | chr3.4:56111914-56111933 | None:intergenic | 20.0% |
| !! | TCTATACAAGTTCAAATATT+TGG | - | chr3.4:56109682-56109701 | None:intergenic | 20.0% |
| !! | TTACAAAAATATCTCATGTT+AGG | - | chr3.4:56108502-56108521 | None:intergenic | 20.0% |
| !! | TTCTATTCATAGTGAAATTT+GGG | - | chr3.4:56110723-56110742 | None:intergenic | 20.0% |
| !! | TTTCTATTCATAGTGAAATT+TGG | - | chr3.4:56110724-56110743 | None:intergenic | 20.0% |
| !!! | AAAAGTTCGATTTTGAAAAA+AGG | + | chr3.4:56110861-56110880 | MS.gene04312:intron | 20.0% |
| !!! | AAAGTTCGATTTTGAAAAAA+GGG | + | chr3.4:56110862-56110881 | MS.gene04312:intron | 20.0% |
| !!! | AAAGTTTTACTTGTTCATTT+TGG | - | chr3.4:56107854-56107873 | None:intergenic | 20.0% |
| !!! | AACTCTAGAAGTAATTAAAA+TGG | - | chr3.4:56110066-56110085 | None:intergenic | 20.0% |
| !!! | ACCAATTCATAAATTTTGAA+AGG | + | chr3.4:56107723-56107742 | MS.gene04312:intron | 20.0% |
| !!! | ACTCAACATTTTTTTTTTTG+AGG | + | chr3.4:56111240-56111259 | MS.gene04312:intron | 20.0% |
| !!! | ATCCAAAATAACCATTTTTT+TGG | - | chr3.4:56110679-56110698 | None:intergenic | 20.0% |
| !!! | CAAAGTTCTCTAATTTATTT+TGG | - | chr3.4:56109782-56109801 | None:intergenic | 20.0% |
| !!! | CTCATGATTTATTTTATAGT+TGG | + | chr3.4:56107009-56107028 | MS.gene04312:intron | 20.0% |
| !!! | GACCTAAAATAATCAATTTT+AGG | + | chr3.4:56110783-56110802 | MS.gene04312:intron | 20.0% |
| !!! | GATAAGGTTTTATAAGTTTT+GGG | + | chr3.4:56111572-56111591 | MS.gene04312:intron | 20.0% |
| !!! | GCATAATTTTTTTTTGCAAA+TGG | - | chr3.4:56108088-56108107 | None:intergenic | 20.0% |
| !!! | GGACAATAAATTACTATTTT+TGG | - | chr3.4:56110702-56110721 | None:intergenic | 20.0% |
| !!! | TCACAAAATACTTTATTTCA+TGG | - | chr3.4:56107371-56107390 | None:intergenic | 20.0% |
| !!! | TCCAAAATAACCATTTTTTT+GGG | - | chr3.4:56110678-56110697 | None:intergenic | 20.0% |
| !!! | TGAATTTAACTTTGTTATGT+TGG | + | chr3.4:56111339-56111358 | MS.gene04312:intron | 20.0% |
| !!! | TGATAAGGTTTTATAAGTTT+TGG | + | chr3.4:56111571-56111590 | MS.gene04312:intron | 20.0% |
| !!! | TGTGTATGATTTTGAAAAAT+TGG | + | chr3.4:56111630-56111649 | MS.gene04312:intron | 20.0% |
| !!! | TGTTTAACAAATTTGTTTGT+GGG | + | chr3.4:56109219-56109238 | MS.gene04312:intron | 20.0% |
| !!! | TTAGGATTCTTTTTTATCTT+GGG | + | chr3.4:56111394-56111413 | MS.gene04312:intron | 20.0% |
| !!! | TTCAATTTTAACACTAACTA+AGG | + | chr3.4:56111167-56111186 | MS.gene04312:intron | 20.0% |
| !!! | TTGTTATGTTGGAAATATTT+TGG | + | chr3.4:56111350-56111369 | MS.gene04312:intron | 20.0% |
| !!! | TTGTTATTGTTTAACAAATG+TGG | + | chr3.4:56111832-56111851 | MS.gene04312:intron | 20.0% |
| !!! | TTTATTCTTTTACTTTCAGT+TGG | + | chr3.4:56110327-56110346 | MS.gene04312:intron | 20.0% |
| !!! | TTTGAGTCTTTATTTTACAT+TGG | + | chr3.4:56110129-56110148 | MS.gene04312:intron | 20.0% |
| !!! | TTTTTCAAAATCGAACTTTT+TGG | - | chr3.4:56110861-56110880 | None:intergenic | 20.0% |
| ! | AAAAACATTTCTATTGTCCA+AGG | + | chr3.4:56111135-56111154 | MS.gene04312:intron | 25.0% |
| ! | AAAACATTTCTATTGTCCAA+GGG | + | chr3.4:56111136-56111155 | MS.gene04312:intron | 25.0% |
| ! | AATAGTTATATTTGCAAACG+CGG | - | chr3.4:56106874-56106893 | None:intergenic | 25.0% |
| ! | AATATTTCATGACTTTGTGT+TGG | + | chr3.4:56111516-56111535 | MS.gene04312:intron | 25.0% |
| ! | ACACGTCATAATTCTTTAAT+TGG | - | chr3.4:56107400-56107419 | None:intergenic | 25.0% |
| ! | ACATAATCTGTTCAATCATT+TGG | + | chr3.4:56107968-56107987 | MS.gene04312:intron | 25.0% |
| ! | ACTGAATAAGAATTTAGAAG+GGG | + | chr3.4:56111094-56111113 | MS.gene04312:intron | 25.0% |
| ! | AGACTGAATAAGAATTTAGA+AGG | + | chr3.4:56111092-56111111 | MS.gene04312:intron | 25.0% |
| ! | AGTTATTCAATAAGAATACC+TGG | - | chr3.4:56110505-56110524 | None:intergenic | 25.0% |
| ! | ATACAATCATTTCCTATAGA+CGG | + | chr3.4:56110946-56110965 | MS.gene04312:intron | 25.0% |
| ! | ATACTTCTATGCTTAATGAA+TGG | + | chr3.4:56111209-56111228 | MS.gene04312:intron | 25.0% |
| ! | ATGAACTAAAGATTAAGCTT+AGG | + | chr3.4:56111376-56111395 | MS.gene04312:intron | 25.0% |
| ! | ATTCATTAAGCATAGAAGTA+TGG | - | chr3.4:56111210-56111229 | None:intergenic | 25.0% |
| ! | CATCGAATTTGAATAAACAA+AGG | + | chr3.4:56111037-56111056 | MS.gene04312:intron | 25.0% |
| ! | CATTATAATGCTTATGAACT+TGG | - | chr3.4:56108033-56108052 | None:intergenic | 25.0% |
| ! | GACTGAATAAGAATTTAGAA+GGG | + | chr3.4:56111093-56111112 | MS.gene04312:intron | 25.0% |
| ! | GATTCTATTCCATAATCTTA+TGG | + | chr3.4:56109567-56109586 | MS.gene04312:intron | 25.0% |
| ! | GCCTTTCAAAATTTATGAAT+TGG | - | chr3.4:56107727-56107746 | None:intergenic | 25.0% |
| ! | GCTAGAATAAAAAAGAAGTT+TGG | + | chr3.4:56106577-56106596 | MS.gene04312:intron | 25.0% |
| ! | GGAATACATCTAAACAAATA+CGG | - | chr3.4:56109537-56109556 | None:intergenic | 25.0% |
| ! | GTGTTCTAACTTTAATCTAA+TGG | - | chr3.4:56108786-56108805 | None:intergenic | 25.0% |
| ! | TAAAAAAAAATCTAGCGTTG+AGG | + | chr3.4:56109337-56109356 | MS.gene04312:intron | 25.0% |
| ! | TACAAGTAATTAAAACGGAA+AGG | - | chr3.4:56107997-56108016 | None:intergenic | 25.0% |
| ! | TCGAATTTGAATAAACAAAG+GGG | + | chr3.4:56111039-56111058 | MS.gene04312:intron | 25.0% |
| ! | TGAAATATAATGAAGGACAA+TGG | - | chr3.4:56106738-56106757 | None:intergenic | 25.0% |
| ! | TGCATCATGAAATATAATGA+AGG | - | chr3.4:56106745-56106764 | None:intergenic | 25.0% |
| ! | TTCTTTGACTAAAAAGAAAG+TGG | - | chr3.4:56110750-56110769 | None:intergenic | 25.0% |
| ! | TTTACTCTATGTAATACATG+CGG | + | chr3.4:56106397-56106416 | MS.gene04312:CDS | 25.0% |
| !! | AAAAAAAAATCTAGCGTTGA+GGG | + | chr3.4:56109338-56109357 | MS.gene04312:intron | 25.0% |
| !! | AACAAAATGACTAACCTTTT+TGG | - | chr3.4:56106434-56106453 | None:intergenic | 25.0% |
| !! | AGTTTATGATACTTGCTAAA+TGG | + | chr3.4:56108285-56108304 | MS.gene04312:intron | 25.0% |
| !! | ATTATTTCTCCAATCTAAAC+AGG | + | chr3.4:56108634-56108653 | MS.gene04312:intron | 25.0% |
| !! | ATTTAAAACTACCTCTTCAA+CGG | - | chr3.4:56108184-56108203 | None:intergenic | 25.0% |
| !! | CCATGAAAATTTTATGCAAA+TGG | - | chr3.4:56110204-56110223 | None:intergenic | 25.0% |
| !! | CCATTTGCATAAAATTTTCA+TGG | + | chr3.4:56110201-56110220 | MS.gene04312:intron | 25.0% |
| !! | GCCCTAAAATTGATTATTTT+AGG | - | chr3.4:56110788-56110807 | None:intergenic | 25.0% |
| !! | GTGTTTAACAAATTTGTTTG+TGG | + | chr3.4:56109218-56109237 | MS.gene04312:intron | 25.0% |
| !! | GTTTATGATACTTGCTAAAT+GGG | + | chr3.4:56108286-56108305 | MS.gene04312:intron | 25.0% |
| !! | GTTTTGTCAATACTTAAAAG+TGG | - | chr3.4:56108249-56108268 | None:intergenic | 25.0% |
| !! | TGGACAATAGAAATGTTTTT+GGG | - | chr3.4:56111135-56111154 | None:intergenic | 25.0% |
| !! | TTATTCTTTTACAGCCAATT+GGG | + | chr3.4:56108214-56108233 | MS.gene04312:intron | 25.0% |
| !! | TTGGACAATAGAAATGTTTT+TGG | - | chr3.4:56111136-56111155 | None:intergenic | 25.0% |
| !! | TTTATTCTTTTACAGCCAAT+TGG | + | chr3.4:56108213-56108232 | MS.gene04312:intron | 25.0% |
| !! | TTTTTAAATGAATTGAGAGG+TGG | + | chr3.4:56108706-56108725 | MS.gene04312:intron | 25.0% |
| !!! | AAATGCTTTTGAAAGGATTA+AGG | - | chr3.4:56107669-56107688 | None:intergenic | 25.0% |
| !!! | AACGGATTGTTAAAATTGTT+TGG | - | chr3.4:56107070-56107089 | None:intergenic | 25.0% |
| !!! | AAGTTCGATTTTGAAAAAAG+GGG | + | chr3.4:56110863-56110882 | MS.gene04312:intron | 25.0% |
| !!! | AGTCATTTTGTTAACAAGTA+TGG | + | chr3.4:56106442-56106461 | MS.gene04312:intron | 25.0% |
| !!! | CTTAGGATTCTTTTTTATCT+TGG | + | chr3.4:56111393-56111412 | MS.gene04312:intron | 25.0% |
| !!! | GTTTTTTTTTAAACTCTGCA+GGG | + | chr3.4:56106900-56106919 | MS.gene04312:intron | 25.0% |
| !!! | TGCATTTTGATATAATATGC+TGG | + | chr3.4:56106761-56106780 | MS.gene04312:intron | 25.0% |
| !!! | TGTTTTGAAATGCTTTTGAA+AGG | - | chr3.4:56107676-56107695 | None:intergenic | 25.0% |
| !!! | TTATCTGCTTGTACTTTTTT+TGG | + | chr3.4:56107518-56107537 | MS.gene04312:intron | 25.0% |
| !!! | TTTTTAAGCTAGATTCAAAG+AGG | + | chr3.4:56111424-56111443 | MS.gene04312:intron | 25.0% |
| !!! | TTTTTTTTTAAACTCTGCAG+GGG | + | chr3.4:56106901-56106920 | MS.gene04312:intron | 25.0% |
| AGCTTCTATGAGTTACTAAA+TGG | + | chr3.4:56110390-56110409 | MS.gene04312:intron | 30.0% | |
| ATATCTTTGGCCCAAAAAAA+TGG | + | chr3.4:56110665-56110684 | MS.gene04312:intron | 30.0% | |
| ATCCTGCAAATTATATTCAG+TGG | - | chr3.4:56107821-56107840 | None:intergenic | 30.0% | |
| ATTGAGAACAAGTTACTTGT+TGG | + | chr3.4:56111069-56111088 | MS.gene04312:intron | 30.0% | |
| ATTGTTTAACAAATGTGGTG+TGG | + | chr3.4:56111837-56111856 | MS.gene04312:intron | 30.0% | |
| ATTTCATATCCAGTTCTTTG+TGG | + | chr3.4:56107585-56107604 | MS.gene04312:intron | 30.0% | |
| CATAATCTTATGGATCAAGT+AGG | + | chr3.4:56109577-56109596 | MS.gene04312:intron | 30.0% | |
| CATGCTATTGTTTCGTAATT+CGG | - | chr3.4:56109458-56109477 | None:intergenic | 30.0% | |
| CATTCTTCAGAAAATGATGA+TGG | + | chr3.4:56108374-56108393 | MS.gene04312:CDS | 30.0% | |
| CTACTTGATCCATAAGATTA+TGG | - | chr3.4:56109579-56109598 | None:intergenic | 30.0% | |
| GAAAACAAGTATCTCTTCAT+CGG | - | chr3.4:56111949-56111968 | None:intergenic | 30.0% | |
| GAAGAATGAACAATTCCTAA+TGG | - | chr3.4:56108362-56108381 | None:intergenic | 30.0% | |
| GAAGAATGATCAATTCCTAA+CGG | - | chr3.4:56110467-56110486 | None:intergenic | 30.0% | |
| GCAAATTATATTCAGTGGAT+AGG | - | chr3.4:56107816-56107835 | None:intergenic | 30.0% | |
| GCTTCTATGAGTTACTAAAT+GGG | + | chr3.4:56110391-56110410 | MS.gene04312:intron | 30.0% | |
| GGAATAGAATCAATACAGAA+GGG | - | chr3.4:56109558-56109577 | None:intergenic | 30.0% | |
| GTGTTCTCTATTTGATGTAA+TGG | + | chr3.4:56109375-56109394 | MS.gene04312:intron | 30.0% | |
| GTTAAATTCAAAGCAGAAAG+AGG | - | chr3.4:56111329-56111348 | None:intergenic | 30.0% | |
| GTTCCAACAGTATATTCAAT+TGG | - | chr3.4:56108998-56109017 | None:intergenic | 30.0% | |
| TAAAACATGCCTGTTTAGAT+TGG | - | chr3.4:56108646-56108665 | None:intergenic | 30.0% | |
| TAAGCATGAATTAGCAACAT+GGG | - | chr3.4:56110165-56110184 | None:intergenic | 30.0% | |
| TACAAGTTCAAATATTTGGG+AGG | - | chr3.4:56109678-56109697 | None:intergenic | 30.0% | |
| TACAGAATATATTCCATCCT+CGG | + | chr3.4:56110031-56110050 | MS.gene04312:intron | 30.0% | |
| TACTAAATGGGTATTTGTTC+AGG | + | chr3.4:56110403-56110422 | MS.gene04312:intron | 30.0% | |
| TGGAATAGAATCAATACAGA+AGG | - | chr3.4:56109559-56109578 | None:intergenic | 30.0% | |
| TGTCCAATTGAATATACTGT+TGG | + | chr3.4:56108992-56109011 | MS.gene04312:intron | 30.0% | |
| TGTTTCCTTTGTGTTGAAAT+TGG | + | chr3.4:56109149-56109168 | MS.gene04312:intron | 30.0% | |
| TTAAATCTTCCACAAAGAAC+TGG | - | chr3.4:56107597-56107616 | None:intergenic | 30.0% | |
| TTGTATATGTTTGTTTCGGA+TGG | + | chr3.4:56111885-56111904 | MS.gene04312:intron | 30.0% | |
| ! | ACAATCCGTTTGAAATCAAA+TGG | + | chr3.4:56107080-56107099 | MS.gene04312:intron | 30.0% |
| ! | AGGCAATTTTGTCAAGAAAT+TGG | + | chr3.4:56109079-56109098 | MS.gene04312:intron | 30.0% |
| ! | ATCCACTGAATATAATTTGC+AGG | + | chr3.4:56107816-56107835 | MS.gene04312:intron | 30.0% |
| ! | CAACACCATTTGATTTCAAA+CGG | - | chr3.4:56107088-56107107 | None:intergenic | 30.0% |
| ! | GCCCAAAAAAATGGTTATTT+TGG | + | chr3.4:56110674-56110693 | MS.gene04312:intron | 30.0% |
| ! | TGGGTAAAATGAGAGATTTT+AGG | + | chr3.4:56111591-56111610 | MS.gene04312:intron | 30.0% |
| ! | TGTATGTTTTGTGTTTGTCT+TGG | + | chr3.4:56109800-56109819 | MS.gene04312:intron | 30.0% |
| ! | TTCAGAAAATGATAATGTCC+AGG | + | chr3.4:56110484-56110503 | MS.gene04312:CDS | 30.0% |
| ! | TTTAAAACTACCTCTTCAAC+GGG | - | chr3.4:56108183-56108202 | None:intergenic | 30.0% |
| ! | TTTAAAACTCACAAAGAACC+AGG | - | chr3.4:56106224-56106243 | None:intergenic | 30.0% |
| !! | ATACTTGTTTTCAGAGTTTG+TGG | + | chr3.4:56111957-56111976 | MS.gene04312:CDS | 30.0% |
| !! | TGGTTTATTTTCCCCTTATT+GGG | - | chr3.4:56107707-56107726 | None:intergenic | 30.0% |
| !! | TTGGTTTATTTTCCCCTTAT+TGG | - | chr3.4:56107708-56107727 | None:intergenic | 30.0% |
| !!! | ATTTTTTTGGGCCAAAGATA+TGG | - | chr3.4:56110666-56110685 | None:intergenic | 30.0% |
| !!! | CGTTTTTTTTTAAACTCTGC+AGG | + | chr3.4:56106899-56106918 | MS.gene04312:intron | 30.0% |
| !!! | GTTCTTTTTGTTTTGACCTT+AGG | + | chr3.4:56111464-56111483 | MS.gene04312:intron | 30.0% |
| !!! | TTTGTGAGTTTTAAACGTAG+TGG | + | chr3.4:56106229-56106248 | MS.gene04312:intron | 30.0% |
| !!! | TTTTTTTGGGCCAAAGATAT+GGG | - | chr3.4:56110665-56110684 | None:intergenic | 30.0% |
| AAAAGACCTGATTGCACTTT+AGG | - | chr3.4:56110918-56110937 | None:intergenic | 35.0% | |
| AAAATAATACCAGTTGGAGG+AGG | + | chr3.4:56107233-56107252 | MS.gene04312:intron | 35.0% | |
| AAAATCAACTTGAGCATGGT+GGG | - | chr3.4:56108760-56108779 | None:intergenic | 35.0% | |
| AAACAATCTAACCCCCAATA+AGG | + | chr3.4:56107691-56107710 | MS.gene04312:intron | 35.0% | |
| AAATTGAACCCAAAATCCCT+TGG | - | chr3.4:56111155-56111174 | None:intergenic | 35.0% | |
| AACAATCTAACCCCCAATAA+GGG | + | chr3.4:56107692-56107711 | MS.gene04312:intron | 35.0% | |
| AACGTGTATGTCTATCTTGA+GGG | + | chr3.4:56109494-56109513 | MS.gene04312:intron | 35.0% | |
| ACAGAATATATTCCATCCTC+GGG | + | chr3.4:56110032-56110051 | MS.gene04312:intron | 35.0% | |
| ACTCATTCTGTTGATCAAAG+TGG | + | chr3.4:56106954-56106973 | MS.gene04312:CDS | 35.0% | |
| ATATCTCATGTTAGGACTAC+TGG | - | chr3.4:56108494-56108513 | None:intergenic | 35.0% | |
| ATCACGAATGCGAAGTAAAA+AGG | - | chr3.4:56106804-56106823 | None:intergenic | 35.0% | |
| ATTCGTCAATACCCAAGAAA+AGG | - | chr3.4:56110366-56110385 | None:intergenic | 35.0% | |
| CAAAGAAAACCAATTCTTGC+CGG | + | chr3.4:56111731-56111750 | MS.gene04312:intron | 35.0% | |
| CATAACTGACATAACTGTAC+TGG | + | chr3.4:56110558-56110577 | MS.gene04312:intron | 35.0% | |
| CTAAGCATGAATTAGCAACA+TGG | - | chr3.4:56110166-56110185 | None:intergenic | 35.0% | |
| CTTCATTCTTCCATGCTTAT+TGG | + | chr3.4:56109950-56109969 | MS.gene04312:intron | 35.0% | |
| GAAGGGAAAATAATACCAGT+TGG | + | chr3.4:56107227-56107246 | MS.gene04312:intron | 35.0% | |
| TAACAAACAACAGTGTGAGT+CGG | - | chr3.4:56111282-56111301 | None:intergenic | 35.0% | |
| TAACGTGTATGTCTATCTTG+AGG | + | chr3.4:56109493-56109512 | MS.gene04312:intron | 35.0% | |
| TACAAGACATATGTGGTTAG+TGG | - | chr3.4:56106519-56106538 | None:intergenic | 35.0% | |
| TATGGTTTCGATGAAATGCT+TGG | + | chr3.4:56106460-56106479 | MS.gene04312:intron | 35.0% | |
| TGACTTTGTCAAGAAATTCC+TGG | + | chr3.4:56109114-56109133 | MS.gene04312:intron | 35.0% | |
| TGCATTGAACCCTATTGAAA+AGG | + | chr3.4:56110284-56110303 | MS.gene04312:CDS | 35.0% | |
| TTAAAACTACCTCTTCAACG+GGG | - | chr3.4:56108182-56108201 | None:intergenic | 35.0% | |
| TTAGTAGAGAATGCAGAGAA+GGG | + | chr3.4:56107210-56107229 | MS.gene04312:intron | 35.0% | |
| TTATATTATCCTCCTCCAAC+TGG | - | chr3.4:56107245-56107264 | None:intergenic | 35.0% | |
| TTATGAAAACCGGCAAGAAT+TGG | - | chr3.4:56111743-56111762 | None:intergenic | 35.0% | |
| TTGAAAATCCATCAACACGA+GGG | - | chr3.4:56108903-56108922 | None:intergenic | 35.0% | |
| TTTAGTAGAGAATGCAGAGA+AGG | + | chr3.4:56107209-56107228 | MS.gene04312:intron | 35.0% | |
| ! | AAGTTGTTTCATTAAGCCAC+TGG | + | chr3.4:56109701-56109720 | MS.gene04312:intron | 35.0% |
| ! | AATTCGGTGGCATTTAGTAT+GGG | - | chr3.4:56109442-56109461 | None:intergenic | 35.0% |
| ! | ACTTGTTCATTTTGGATGAC+AGG | - | chr3.4:56107846-56107865 | None:intergenic | 35.0% |
| ! | AGGAAGCATAATCTCTTATC+AGG | + | chr3.4:56107171-56107190 | MS.gene04312:intron | 35.0% |
| ! | CATATGTCTTGTACTTTTGC+TGG | + | chr3.4:56106526-56106545 | MS.gene04312:intron | 35.0% |
| ! | CGTTTGAAATCAAATGGTGT+TGG | + | chr3.4:56107086-56107105 | MS.gene04312:intron | 35.0% |
| ! | CTAATGGTAGAGTGTTTGTT+GGG | - | chr3.4:56108346-56108365 | None:intergenic | 35.0% |
| ! | GCAAAAGTACAAGACATATG+TGG | - | chr3.4:56106526-56106545 | None:intergenic | 35.0% |
| ! | GGAAGCATAATCTCTTATCA+GGG | + | chr3.4:56107172-56107191 | MS.gene04312:intron | 35.0% |
| ! | GTATCTTACTCAAGTGCTTT+TGG | + | chr3.4:56107141-56107160 | MS.gene04312:intron | 35.0% |
| ! | TAATTCGGTGGCATTTAGTA+TGG | - | chr3.4:56109443-56109462 | None:intergenic | 35.0% |
| ! | TAGCACATTTGTTGCAATTG+TGG | - | chr3.4:56110829-56110848 | None:intergenic | 35.0% |
| ! | TCTATTGTCCAAGGGATTTT+GGG | + | chr3.4:56111144-56111163 | MS.gene04312:intron | 35.0% |
| ! | TGATAACTGTGTATGGACTA+GGG | + | chr3.4:56109917-56109936 | MS.gene04312:intron | 35.0% |
| ! | TGCTAAATGGGTATTTTCTC+AGG | + | chr3.4:56108298-56108317 | MS.gene04312:intron | 35.0% |
| ! | TTACTCAAGTGCTTTTGGAT+AGG | + | chr3.4:56107146-56107165 | MS.gene04312:intron | 35.0% |
| ! | TTCAGTGGATAGGATGTTTT+AGG | - | chr3.4:56107806-56107825 | None:intergenic | 35.0% |
| ! | TTCTATTGTCCAAGGGATTT+TGG | + | chr3.4:56111143-56111162 | MS.gene04312:intron | 35.0% |
| ! | TTTTTATGTCCTCGAAGTGT+TGG | + | chr3.4:56111765-56111784 | MS.gene04312:intron | 35.0% |
| !! | AAATCAAATGGTGTTGGTGA+TGG | + | chr3.4:56107092-56107111 | MS.gene04312:intron | 35.0% |
| !! | AAGTAGCCTGACTTACTTTT+TGG | + | chr3.4:56110597-56110616 | MS.gene04312:intron | 35.0% |
| !! | AAGTGTTGGGTGAAAATATG+CGG | + | chr3.4:56111779-56111798 | MS.gene04312:intron | 35.0% |
| !! | GGTTTATTTTCCCCTTATTG+GGG | - | chr3.4:56107706-56107725 | None:intergenic | 35.0% |
| !! | GTTTATTTTCCCCTTATTGG+GGG | - | chr3.4:56107705-56107724 | None:intergenic | 35.0% |
| !! | TTCAGAAAATGATGATGGAC+AGG | + | chr3.4:56108379-56108398 | MS.gene04312:CDS | 35.0% |
| !! | TTTTATGTCCTCGAAGTGTT+GGG | + | chr3.4:56111766-56111785 | MS.gene04312:intron | 35.0% |
| !!! | ATTATTTTAGGTCCCAGAAG+TGG | - | chr3.4:56110776-56110795 | None:intergenic | 35.0% |
| !!! | CAATTTTAGGGCCAAAAATC+TGG | + | chr3.4:56110796-56110815 | MS.gene04312:intron | 35.0% |
| !!! | CTGCTTGTACTTTTTTTGGA+TGG | + | chr3.4:56107522-56107541 | MS.gene04312:intron | 35.0% |
| AAAGACCAATTCGACTACGA+TGG | + | chr3.4:56109400-56109419 | MS.gene04312:intron | 40.0% | |
| AAATCAACTTGAGCATGGTG+GGG | - | chr3.4:56108759-56108778 | None:intergenic | 40.0% | |
| AAATTCGATGATTCCCTCGA+AGG | - | chr3.4:56111027-56111046 | None:intergenic | 40.0% | |
| AAGACCAATTCGACTACGAT+GGG | + | chr3.4:56109401-56109420 | MS.gene04312:intron | 40.0% | |
| AAGCGTTTAAACTGCCTATC+AGG | - | chr3.4:56106191-56106210 | None:intergenic | 40.0% | |
| ACAAATCCATTGACCTTCGA+GGG | + | chr3.4:56111011-56111030 | MS.gene04312:intron | 40.0% | |
| ACAATCTAACCCCCAATAAG+GGG | + | chr3.4:56107693-56107712 | MS.gene04312:intron | 40.0% | |
| ACGTGTATGTCTATCTTGAG+GGG | + | chr3.4:56109495-56109514 | MS.gene04312:intron | 40.0% | |
| AGAAAGCAAGGCCAAGATAA+CGG | + | chr3.4:56108932-56108951 | MS.gene04312:intron | 40.0% | |
| AGACGTAGATGTCAACATTG+TGG | + | chr3.4:56106325-56106344 | MS.gene04312:intron | 40.0% | |
| AGAGAACCTAAAGTGCAATC+AGG | + | chr3.4:56110909-56110928 | MS.gene04312:intron | 40.0% | |
| AGATATCCAACACCGTCTAT+AGG | - | chr3.4:56110961-56110980 | None:intergenic | 40.0% | |
| AGCAAACAAGTATGGTCAAC+AGG | - | chr3.4:56106828-56106847 | None:intergenic | 40.0% | |
| AGCATAAGGAGCTCATTACA+CGG | - | chr3.4:56109865-56109884 | None:intergenic | 40.0% | |
| ATATTTCTCCCCATCTGAAG+AGG | + | chr3.4:56108534-56108553 | MS.gene04312:intron | 40.0% | |
| ATTCGAACCTTCAGTAGTTG+TGG | - | chr3.4:56110259-56110278 | None:intergenic | 40.0% | |
| ATTGTAAGGGGAATCGAGAA+CGG | - | chr3.4:56109020-56109039 | None:intergenic | 40.0% | |
| CAACAAATGTGCTAACTGAG+GGG | + | chr3.4:56110835-56110854 | MS.gene04312:intron | 40.0% | |
| CAAGTTTCCATCAGAAAGCA+AGG | + | chr3.4:56108920-56108939 | MS.gene04312:intron | 40.0% | |
| CACGTCAATAACTTGACGTA+TGG | - | chr3.4:56107277-56107296 | None:intergenic | 40.0% | |
| CATAGAGTAAATCTTCCAGC+TGG | - | chr3.4:56106388-56106407 | None:intergenic | 40.0% | |
| CCAACAAACACTCTACCATT+AGG | + | chr3.4:56108344-56108363 | MS.gene04312:CDS | 40.0% | |
| CCAGTTGCAAAAAGCTTAGT+GGG | + | chr3.4:56107035-56107054 | MS.gene04312:intron | 40.0% | |
| CGTACATCAGAAGGAAGATT+GGG | + | chr3.4:56109894-56109913 | MS.gene04312:intron | 40.0% | |
| CTCCATTCCTATTTCCTACA+CGG | - | chr3.4:56109728-56109747 | None:intergenic | 40.0% | |
| CTCGATTCCCCTTACAATTT+GGG | + | chr3.4:56109022-56109041 | MS.gene04312:intron | 40.0% | |
| CTTGAAAATCCATCAACACG+AGG | - | chr3.4:56108904-56108923 | None:intergenic | 40.0% | |
| GAAAATCAACTTGAGCATGG+TGG | - | chr3.4:56108761-56108780 | None:intergenic | 40.0% | |
| GAAACACAGATCTTAAAGCC+AGG | - | chr3.4:56109135-56109154 | None:intergenic | 40.0% | |
| GAATCTACAGTTACAGTCCA+TGG | + | chr3.4:56109275-56109294 | MS.gene04312:intron | 40.0% | |
| GAGAATGCAGCAAACAAGTA+TGG | - | chr3.4:56106836-56106855 | None:intergenic | 40.0% | |
| GATTGGGTGATAACTGTGTA+TGG | + | chr3.4:56109910-56109929 | MS.gene04312:intron | 40.0% | |
| GCAACAAATGTGCTAACTGA+GGG | + | chr3.4:56110834-56110853 | MS.gene04312:intron | 40.0% | |
| GCTATTGTTTCGTAATTCGG+TGG | - | chr3.4:56109455-56109474 | None:intergenic | 40.0% | |
| GGGAAAATAATACCAGTTGG+AGG | + | chr3.4:56107230-56107249 | MS.gene04312:intron | 40.0% | |
| GTCGAAAATCAACTTGAGCA+TGG | - | chr3.4:56108764-56108783 | None:intergenic | 40.0% | |
| GTGATAACTGTGTATGGACT+AGG | + | chr3.4:56109916-56109935 | MS.gene04312:intron | 40.0% | |
| GTGTGTGCGTGTATATATTG+TGG | + | chr3.4:56111859-56111878 | MS.gene04312:intron | 40.0% | |
| TACAAATCCATTGACCTTCG+AGG | + | chr3.4:56111010-56111029 | MS.gene04312:intron | 40.0% | |
| TATTTCCGAAGATCCTTCCA+AGG | + | chr3.4:56110233-56110252 | MS.gene04312:CDS | 40.0% | |
| TCAAAGTCTCGTACATCAGA+AGG | + | chr3.4:56109885-56109904 | MS.gene04312:intron | 40.0% | |
| TCATTTCCTATAGACGGTGT+TGG | + | chr3.4:56110952-56110971 | MS.gene04312:intron | 40.0% | |
| TCGTACATCAGAAGGAAGAT+TGG | + | chr3.4:56109893-56109912 | MS.gene04312:intron | 40.0% | |
| TCTCGATTCCCCTTACAATT+TGG | + | chr3.4:56109021-56109040 | MS.gene04312:intron | 40.0% | |
| TGCAACAAATGTGCTAACTG+AGG | + | chr3.4:56110833-56110852 | MS.gene04312:intron | 40.0% | |
| TGCATGATTGTTCGAACCAT+CGG | - | chr3.4:56108154-56108173 | None:intergenic | 40.0% | |
| TGTAGAGCTTGACACAATAG+TGG | - | chr3.4:56110994-56111013 | None:intergenic | 40.0% | |
| TGTTTCTTGTTAAAGGGGAG+AGG | - | chr3.4:56109631-56109650 | None:intergenic | 40.0% | |
| TTCTGTTGATCAAAGTGGTC+TGG | + | chr3.4:56106959-56106978 | MS.gene04312:CDS | 40.0% | |
| ! | AAACGTAGTGGCTCTTTTGT+GGG | + | chr3.4:56106241-56106260 | MS.gene04312:intron | 40.0% |
| ! | AGTGTTGGGTGAAAATATGC+GGG | + | chr3.4:56111780-56111799 | MS.gene04312:intron | 40.0% |
| ! | ATAATGGAGGAGGTGAAAGA+TGG | - | chr3.4:56108825-56108844 | None:intergenic | 40.0% |
| ! | ATGCAAGGTACCAATAAGCA+TGG | - | chr3.4:56109963-56109982 | None:intergenic | 40.0% |
| ! | ATTCGGTGGCATTTAGTATG+GGG | - | chr3.4:56109441-56109460 | None:intergenic | 40.0% |
| ! | CAAGTGCTTTTGGATAGGAA+AGG | + | chr3.4:56107151-56107170 | MS.gene04312:intron | 40.0% |
| ! | CCTAATGGTAGAGTGTTTGT+TGG | - | chr3.4:56108347-56108366 | None:intergenic | 40.0% |
| ! | CTAACGGTAGAGTGTTTGTT+GGG | - | chr3.4:56110451-56110470 | None:intergenic | 40.0% |
| ! | GAGGACTATTAGTCTCAGTA+TGG | + | chr3.4:56109745-56109764 | MS.gene04312:intron | 40.0% |
| ! | GTGAAAATATGCGGGTTATG+TGG | + | chr3.4:56111788-56111807 | MS.gene04312:intron | 40.0% |
| ! | TAAACGTAGTGGCTCTTTTG+TGG | + | chr3.4:56106240-56106259 | MS.gene04312:intron | 40.0% |
| ! | TACAACTAGCCTCTTCAGAT+GGG | - | chr3.4:56108546-56108565 | None:intergenic | 40.0% |
| ! | TATTTTCACCCAACACTTCG+AGG | - | chr3.4:56111777-56111796 | None:intergenic | 40.0% |
| ! | TCCGTTCTTTTCCGTTATCT+TGG | - | chr3.4:56108946-56108965 | None:intergenic | 40.0% |
| ! | TCTTGTACTTTTGCTGGAGT+AGG | + | chr3.4:56106532-56106551 | MS.gene04312:intron | 40.0% |
| ! | TTACAACTAGCCTCTTCAGA+TGG | - | chr3.4:56108547-56108566 | None:intergenic | 40.0% |
| ! | TTTTGGATGGCACAATGAGA+TGG | + | chr3.4:56107535-56107554 | MS.gene04312:intron | 40.0% |
| !! | GATAACTGTGTATGGACTAG+GGG | + | chr3.4:56109918-56109937 | MS.gene04312:intron | 40.0% |
| !! | GCCAAGATAACGGAAAAGAA+CGG | + | chr3.4:56108942-56108961 | MS.gene04312:intron | 40.0% |
| !! | GTACGAGACTTTGAAGCATA+AGG | - | chr3.4:56109879-56109898 | None:intergenic | 40.0% |
| !! | TACTTTCAGTTGGTAGCGTT+CGG | + | chr3.4:56110337-56110356 | MS.gene04312:intron | 40.0% |
| AAACGCTTCAAGAAGAGTCC+TGG | + | chr3.4:56106203-56106222 | MS.gene04312:CDS | 45.0% | |
| AACACTTCTCAAATGCGTCC+CGG | + | chr3.4:56106361-56106380 | MS.gene04312:CDS | 45.0% | |
| AATTTGGGAGAGCTCCTCTA+AGG | + | chr3.4:56109037-56109056 | MS.gene04312:intron | 45.0% | |
| AGACCAATTCGACTACGATG+GGG | + | chr3.4:56109402-56109421 | MS.gene04312:intron | 45.0% | |
| AGGAGCTCTCCCAAATTGTA+AGG | - | chr3.4:56109034-56109053 | None:intergenic | 45.0% | |
| AGTCAAAGAATCGCCACTTC+TGG | + | chr3.4:56110760-56110779 | MS.gene04312:intron | 45.0% | |
| AGTGCAACGAGATCAACATG+AGG | + | chr3.4:56109248-56109267 | MS.gene04312:intron | 45.0% | |
| AGTTACAGTCCATGGTTCGT+GGG | + | chr3.4:56109283-56109302 | MS.gene04312:intron | 45.0% | |
| ATGATTCCCTCGAAGGTCAA+TGG | - | chr3.4:56111020-56111039 | None:intergenic | 45.0% | |
| CCAACAAACACTCTACCGTT+AGG | + | chr3.4:56110449-56110468 | MS.gene04312:CDS | 45.0% | |
| CGACGCCAATTTCAACACAA+AGG | - | chr3.4:56109157-56109176 | None:intergenic | 45.0% | |
| CGTGTAGGAAATAGGAATGG+AGG | + | chr3.4:56109726-56109745 | MS.gene04312:intron | 45.0% | |
| CGTGTATGTCTATCTTGAGG+GGG | + | chr3.4:56109496-56109515 | MS.gene04312:intron | 45.0% | |
| CTCGACTCATGTAACTGTAC+CGG | + | chr3.4:56108453-56108472 | MS.gene04312:intron | 45.0% | |
| GACCGTGTAGGAAATAGGAA+TGG | + | chr3.4:56109723-56109742 | MS.gene04312:intron | 45.0% | |
| GAGCTCTCCCAAATTGTAAG+GGG | - | chr3.4:56109032-56109051 | None:intergenic | 45.0% | |
| GAGGGACCAAAAAGTAAGTC+AGG | - | chr3.4:56110606-56110625 | None:intergenic | 45.0% | |
| GAGGTGAAAGATGGTGTCTA+TGG | - | chr3.4:56108816-56108835 | None:intergenic | 45.0% | |
| GCATTGCATCTGTTGCAGTT+TGG | + | chr3.4:56110633-56110652 | MS.gene04312:intron | 45.0% | |
| GCCAGTTGCAAAAAGCTTAG+TGG | + | chr3.4:56107034-56107053 | MS.gene04312:intron | 45.0% | |
| GCCTTACTTGAAAGTCATCG+TGG | + | chr3.4:56107745-56107764 | MS.gene04312:intron | 45.0% | |
| GCTTCGGTTATGTCAGAAAG+AGG | + | chr3.4:56109059-56109078 | MS.gene04312:intron | 45.0% | |
| GGAGCTCTCCCAAATTGTAA+GGG | - | chr3.4:56109033-56109052 | None:intergenic | 45.0% | |
| GTCAAAGAATCGCCACTTCT+GGG | + | chr3.4:56110761-56110780 | MS.gene04312:intron | 45.0% | |
| GTGCAACGAGATCAACATGA+GGG | + | chr3.4:56109249-56109268 | MS.gene04312:intron | 45.0% | |
| TAAAATGGAAAGGACACCCG+AGG | - | chr3.4:56110051-56110070 | None:intergenic | 45.0% | |
| TAGGACTACTGGAACTCACA+TGG | - | chr3.4:56108483-56108502 | None:intergenic | 45.0% | |
| TAGGGCCAAAAATCTGGATC+AGG | + | chr3.4:56110802-56110821 | MS.gene04312:intron | 45.0% | |
| TGACATAACCGAAGCCTTAG+AGG | - | chr3.4:56109054-56109073 | None:intergenic | 45.0% | |
| TGAGAGGTGGCATTTAGCAT+GGG | + | chr3.4:56108719-56108738 | MS.gene04312:intron | 45.0% | |
| TGCAACAGATGCAATGCTTG+AGG | - | chr3.4:56110630-56110649 | None:intergenic | 45.0% | |
| TGCAACGAGATCAACATGAG+GGG | + | chr3.4:56109250-56109269 | MS.gene04312:intron | 45.0% | |
| TGGGAAGTAGCAGATAGGTT+GGG | + | chr3.4:56109302-56109321 | MS.gene04312:intron | 45.0% | |
| TTGAGAGGTGGCATTTAGCA+TGG | + | chr3.4:56108718-56108737 | MS.gene04312:intron | 45.0% | |
| TTGGTCTCGACCCATATCTT+TGG | + | chr3.4:56110652-56110671 | MS.gene04312:intron | 45.0% | |
| TTTGCTCAGATACCCTTCGT+AGG | + | chr3.4:56108854-56108873 | MS.gene04312:intron | 45.0% | |
| ! | ACAACTAGCCTCTTCAGATG+GGG | - | chr3.4:56108545-56108564 | None:intergenic | 45.0% |
| ! | CCCACTAAGCTTTTTGCAAC+TGG | - | chr3.4:56107038-56107057 | None:intergenic | 45.0% |
| ! | CCTAACGGTAGAGTGTTTGT+TGG | - | chr3.4:56110452-56110471 | None:intergenic | 45.0% |
| ! | GCCACGATGACTTTCAAGTA+AGG | - | chr3.4:56107749-56107768 | None:intergenic | 45.0% |
| ! | GTGGACCTGATCCAGATTTT+TGG | - | chr3.4:56110810-56110829 | None:intergenic | 45.0% |
| ! | GTGTTGAAATTGGCGTCGAA+GGG | + | chr3.4:56109159-56109178 | MS.gene04312:intron | 45.0% |
| ! | TATCTCTTCATCGGCTGAAG+TGG | - | chr3.4:56111940-56111959 | None:intergenic | 45.0% |
| ! | TGTGTTGAAATTGGCGTCGA+AGG | + | chr3.4:56109158-56109177 | MS.gene04312:intron | 45.0% |
| !! | ACGAAGGGTATCTGAGCAAA+GGG | - | chr3.4:56108854-56108873 | None:intergenic | 45.0% |
| !! | ATCTTGGCCTTGCTTTCTGA+TGG | - | chr3.4:56108930-56108949 | None:intergenic | 45.0% |
| !! | GTTGGGTGTTCTGAAGATTC+AGG | - | chr3.4:56108329-56108348 | None:intergenic | 45.0% |
| !! | TACGAAGGGTATCTGAGCAA+AGG | - | chr3.4:56108855-56108874 | None:intergenic | 45.0% |
| !! | TGTATGGACTAGGGGATGTT+TGG | + | chr3.4:56109926-56109945 | MS.gene04312:intron | 45.0% |
| !!! | GTTTTTGGCATTTCTCGACG+AGG | + | chr3.4:56111993-56112012 | MS.gene04312:CDS | 45.0% |
| !!! | TTGTTTTGACCTTAGGCCGT+GGG | + | chr3.4:56111471-56111490 | MS.gene04312:intron | 45.0% |
| !!! | TTTGTTTTGACCTTAGGCCG+TGG | + | chr3.4:56111470-56111489 | MS.gene04312:intron | 45.0% |
| ACACTTCTCAAATGCGTCCC+GGG | + | chr3.4:56106362-56106381 | MS.gene04312:CDS | 50.0% | |
| ACCATCGGCAACAATGAGCT+TGG | - | chr3.4:56108139-56108158 | None:intergenic | 50.0% | |
| ACCTTCAGTAGTTGTGGCCT+TGG | - | chr3.4:56110253-56110272 | None:intergenic | 50.0% | |
| AGATGCAATGCTTGAGGCGA+GGG | - | chr3.4:56110624-56110643 | None:intergenic | 50.0% | |
| AGGACTTGCCATCTTTCTCG+TGG | + | chr3.4:56112013-56112032 | MS.gene04312:CDS | 50.0% | |
| AGTAAATCTTCCAGCTGGCC+CGG | - | chr3.4:56106383-56106402 | None:intergenic | 50.0% | |
| AGTGGCAGAACACTCCCAAT+TGG | - | chr3.4:56108231-56108250 | None:intergenic | 50.0% | |
| ATCCATCAACACGAGGGAAG+AGG | - | chr3.4:56108897-56108916 | None:intergenic | 50.0% | |
| ATTAAGCCACTGGACCGTGT+AGG | + | chr3.4:56109711-56109730 | MS.gene04312:intron | 50.0% | |
| CACTGGACCGTGTAGGAAAT+AGG | + | chr3.4:56109718-56109737 | MS.gene04312:intron | 50.0% | |
| CAGTTACAGTCCATGGTTCG+TGG | + | chr3.4:56109282-56109301 | MS.gene04312:intron | 50.0% | |
| CGGCAACAATGAGCTTGGAA+GGG | - | chr3.4:56108134-56108153 | None:intergenic | 50.0% | |
| CTATTTCCTACACGGTCCAG+TGG | - | chr3.4:56109720-56109739 | None:intergenic | 50.0% | |
| CTTCCCCATCGTAGTCGAAT+TGG | - | chr3.4:56109408-56109427 | None:intergenic | 50.0% | |
| GAGAGGTGGCATTTAGCATG+GGG | + | chr3.4:56108720-56108739 | MS.gene04312:intron | 50.0% | |
| GAGCAAAGGGTAGGGGATAA+TGG | - | chr3.4:56108841-56108860 | None:intergenic | 50.0% | |
| GCTTCAAGCGAAGTCCTGAT+AGG | + | chr3.4:56106174-56106193 | MS.gene04312:CDS | 50.0% | |
| GGACTTGCCATCTTTCTCGT+GGG | + | chr3.4:56112014-56112033 | MS.gene04312:CDS | 50.0% | |
| GGAGCTCATTACACGGAGTT+TGG | - | chr3.4:56109858-56109877 | None:intergenic | 50.0% | |
| GGGAAGTAGCAGATAGGTTG+GGG | + | chr3.4:56109303-56109322 | MS.gene04312:intron | 50.0% | |
| GGGTATCTGAGCAAAGGGTA+GGG | - | chr3.4:56108849-56108868 | None:intergenic | 50.0% | |
| GGTATCTGAGCAAAGGGTAG+GGG | - | chr3.4:56108848-56108867 | None:intergenic | 50.0% | |
| GTGGGAAGTAGCAGATAGGT+TGG | + | chr3.4:56109301-56109320 | MS.gene04312:intron | 50.0% | |
| GTTCGTGGGAAGTAGCAGAT+AGG | + | chr3.4:56109297-56109316 | MS.gene04312:intron | 50.0% | |
| TAATACATGCGGCGTCACGT+GGG | + | chr3.4:56106408-56106427 | MS.gene04312:CDS | 50.0% | |
| TCCAAGCTCATTGTTGCCGA+TGG | + | chr3.4:56108135-56108154 | MS.gene04312:CDS | 50.0% | |
| TCCAAGGCCACAACTACTGA+AGG | + | chr3.4:56110249-56110268 | MS.gene04312:CDS | 50.0% | |
| TCCATCAACACGAGGGAAGA+GGG | - | chr3.4:56108896-56108915 | None:intergenic | 50.0% | |
| TCGGCAACAATGAGCTTGGA+AGG | - | chr3.4:56108135-56108154 | None:intergenic | 50.0% | |
| TGCATTGAACCCCGTTGAAG+AGG | + | chr3.4:56108170-56108189 | MS.gene04312:CDS | 50.0% | |
| TGGTCTACCCACGAGAAAGA+TGG | - | chr3.4:56112024-56112043 | None:intergenic | 50.0% | |
| ! | AGCAGATAGGTTGGGGAGAA+TGG | + | chr3.4:56109310-56109329 | MS.gene04312:intron | 50.0% |
| ! | AGCGTTCGGCAACCTTTTCT+TGG | + | chr3.4:56110351-56110370 | MS.gene04312:intron | 50.0% |
| ! | AGGGTATCTGAGCAAAGGGT+AGG | - | chr3.4:56108850-56108869 | None:intergenic | 50.0% |
| ! | CAAAGGGTAGGGGATAATGG+AGG | - | chr3.4:56108838-56108857 | None:intergenic | 50.0% |
| ! | GCGTTCGGCAACCTTTTCTT+GGG | + | chr3.4:56110352-56110371 | MS.gene04312:intron | 50.0% |
| ! | TCAGTAGTTGTGGCCTTGGA+AGG | - | chr3.4:56110249-56110268 | None:intergenic | 50.0% |
| ! | TGTGGCCTTGGAAGGATCTT+CGG | - | chr3.4:56110241-56110260 | None:intergenic | 50.0% |
| !! | GGCAACAGCAGAGTCGTTTT+TGG | + | chr3.4:56111978-56111997 | MS.gene04312:CDS | 50.0% |
| !!! | TGTTTTGACCTTAGGCCGTG+GGG | + | chr3.4:56111472-56111491 | MS.gene04312:intron | 50.0% |
| AAGGGGAAGCAGTCCTACGA+AGG | - | chr3.4:56108870-56108889 | None:intergenic | 55.0% | |
| ACCCTCTTCCCTCGTGTTGA+TGG | + | chr3.4:56108892-56108911 | MS.gene04312:intron | 55.0% | |
| AGGGGAAGCAGTCCTACGAA+GGG | - | chr3.4:56108869-56108888 | None:intergenic | 55.0% | |
| ATGGAAAGGACACCCGAGGA+TGG | - | chr3.4:56110047-56110066 | None:intergenic | 55.0% | |
| CAGATGCAATGCTTGAGGCG+AGG | - | chr3.4:56110625-56110644 | None:intergenic | 55.0% | |
| CTGGAACTCACATGGAGCAC+CGG | - | chr3.4:56108475-56108494 | None:intergenic | 55.0% | |
| GTAAATCTTCCAGCTGGCCC+GGG | - | chr3.4:56106382-56106401 | None:intergenic | 55.0% | |
| GTAATACATGCGGCGTCACG+TGG | + | chr3.4:56106407-56106426 | MS.gene04312:CDS | 55.0% | |
| ! | CTGCTACTTCCCACGAACCA+TGG | - | chr3.4:56109295-56109314 | None:intergenic | 55.0% |
| !! | AGGGTAGGGGATAATGGAGG+AGG | - | chr3.4:56108835-56108854 | None:intergenic | 55.0% |
| !! | GGAGAGCTCCTCTAAGGCTT+CGG | + | chr3.4:56109043-56109062 | MS.gene04312:intron | 55.0% |
| !! | GTTTTGACCTTAGGCCGTGG+GGG | + | chr3.4:56111473-56111492 | MS.gene04312:intron | 55.0% |
| ACACGAGGGAAGAGGGTCGA+AGG | - | chr3.4:56108889-56108908 | None:intergenic | 60.0% | |
| ACGAGGGAAGAGGGTCGAAG+GGG | - | chr3.4:56108887-56108906 | None:intergenic | 60.0% | |
| CACGAGGGAAGAGGGTCGAA+GGG | - | chr3.4:56108888-56108907 | None:intergenic | 60.0% | |
| CTCGTGGGTAGACCACACCT+CGG | + | chr3.4:56112029-56112048 | MS.gene04312:CDS | 60.0% | |
| TCCCACCTTATGCACCCCCA+CGG | - | chr3.4:56111490-56111509 | None:intergenic | 60.0% | |
| TGCTGCGTCACAAGGATGGG+CGG | + | chr3.4:56106147-56106166 | MS.gene04312:CDS | 60.0% | |
| TTATGCACCCCCACGGCCTA+AGG | - | chr3.4:56111483-56111502 | None:intergenic | 60.0% | |
| ! | TTAGGCCGTGGGGGTGCATA+AGG | + | chr3.4:56111482-56111501 | MS.gene04312:intron | 60.0% |
| CGGCGTCACGTGGGCCAAAA+AGG | + | chr3.4:56106417-56106436 | MS.gene04312:CDS | 65.0% | |
| ! | GCCGTGGGGGTGCATAAGGT+GGG | + | chr3.4:56111486-56111505 | MS.gene04312:intron | 65.0% |
| ! | GTGGGGGTGCATAAGGTGGG+AGG | + | chr3.4:56111489-56111508 | MS.gene04312:intron | 65.0% |
| CAAATGCGTCCCGGGCCAGC+TGG | + | chr3.4:56106370-56106389 | MS.gene04312:CDS | 70.0% | |
| ! | GGCCGTGGGGGTGCATAAGG+TGG | + | chr3.4:56111485-56111504 | MS.gene04312:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 56106146 | 56112056 | 56106146 | ID=MS.gene04312 |
| chr3.4 | mRNA | 56106146 | 56112056 | 56106146 | ID=MS.gene04312.t1;Parent=MS.gene04312 |
| chr3.4 | exon | 56106146 | 56106231 | 56106146 | ID=MS.gene04312.t1.exon1;Parent=MS.gene04312.t1 |
| chr3.4 | CDS | 56106146 | 56106231 | 56106146 | ID=cds.MS.gene04312.t1;Parent=MS.gene04312.t1 |
| chr3.4 | exon | 56106327 | 56106438 | 56106327 | ID=MS.gene04312.t1.exon2;Parent=MS.gene04312.t1 |
| chr3.4 | CDS | 56106327 | 56106438 | 56106327 | ID=cds.MS.gene04312.t1;Parent=MS.gene04312.t1 |
| chr3.4 | exon | 56106921 | 56106980 | 56106921 | ID=MS.gene04312.t1.exon3;Parent=MS.gene04312.t1 |
| chr3.4 | CDS | 56106921 | 56106980 | 56106921 | ID=cds.MS.gene04312.t1;Parent=MS.gene04312.t1 |
| chr3.4 | exon | 56108117 | 56108191 | 56108117 | ID=MS.gene04312.t1.exon4;Parent=MS.gene04312.t1 |
| chr3.4 | CDS | 56108117 | 56108191 | 56108117 | ID=cds.MS.gene04312.t1;Parent=MS.gene04312.t1 |
| chr3.4 | exon | 56108320 | 56108400 | 56108320 | ID=MS.gene04312.t1.exon5;Parent=MS.gene04312.t1 |
| chr3.4 | CDS | 56108320 | 56108400 | 56108320 | ID=cds.MS.gene04312.t1;Parent=MS.gene04312.t1 |
| chr3.4 | exon | 56110231 | 56110305 | 56110231 | ID=MS.gene04312.t1.exon6;Parent=MS.gene04312.t1 |
| chr3.4 | CDS | 56110231 | 56110305 | 56110231 | ID=cds.MS.gene04312.t1;Parent=MS.gene04312.t1 |
| chr3.4 | exon | 56110425 | 56110505 | 56110425 | ID=MS.gene04312.t1.exon7;Parent=MS.gene04312.t1 |
| chr3.4 | CDS | 56110425 | 56110505 | 56110425 | ID=cds.MS.gene04312.t1;Parent=MS.gene04312.t1 |
| chr3.4 | exon | 56111946 | 56112056 | 56111946 | ID=MS.gene04312.t1.exon8;Parent=MS.gene04312.t1 |
| chr3.4 | CDS | 56111946 | 56112056 | 56111946 | ID=cds.MS.gene04312.t1;Parent=MS.gene04312.t1 |
| Gene Sequence |
| Protein sequence |
