Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043181.t1 | RHN72439.1 | 33.8 | 656 | 130 | 2 | 175 | 526 | 58 | 713 | 5.60E-91 | 345.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043181.t1 | Q9SZL8 | 36.6 | 183 | 112 | 4 | 196 | 376 | 77 | 257 | 1.3e-19 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043181.t1 | A0A396J342 | 33.8 | 656 | 130 | 2 | 175 | 526 | 58 | 713 | 4.1e-91 | 345.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043181.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043181.t1 | MTR_7g028855 | 63.393 | 336 | 49 | 5 | 1 | 335 | 1 | 263 | 1.57e-128 | 383 |
| MS.gene043181.t1 | MTR_7g446520 | 71.212 | 264 | 58 | 1 | 119 | 382 | 15 | 260 | 6.89e-123 | 363 |
| MS.gene043181.t1 | MTR_7g446520 | 54.545 | 66 | 22 | 1 | 54 | 119 | 15 | 72 | 1.35e-12 | 69.3 |
| MS.gene043181.t1 | MTR_7g446480 | 53.141 | 382 | 50 | 7 | 1 | 382 | 1 | 253 | 6.88e-112 | 335 |
| MS.gene043181.t1 | MTR_7g446510 | 84.211 | 114 | 18 | 0 | 269 | 382 | 155 | 268 | 1.52e-60 | 202 |
| MS.gene043181.t1 | MTR_7g446510 | 47.273 | 110 | 19 | 1 | 400 | 470 | 48 | 157 | 3.77e-20 | 92.0 |
| MS.gene043181.t1 | MTR_1g070355 | 36.413 | 184 | 115 | 1 | 194 | 377 | 76 | 257 | 3.02e-30 | 124 |
| MS.gene043181.t1 | MTR_5g076070 | 33.010 | 206 | 132 | 2 | 149 | 354 | 16 | 215 | 1.57e-28 | 115 |
| MS.gene043181.t1 | MTR_8g467420 | 49.398 | 83 | 41 | 1 | 175 | 256 | 61 | 143 | 2.59e-20 | 88.6 |
| MS.gene043181.t1 | MTR_6g022080 | 25.581 | 172 | 128 | 0 | 183 | 354 | 76 | 247 | 1.37e-18 | 85.9 |
| MS.gene043181.t1 | MTR_0402s0040 | 33.708 | 178 | 106 | 4 | 196 | 368 | 30 | 200 | 2.28e-16 | 82.0 |
| MS.gene043181.t1 | MTR_6g051425 | 28.889 | 180 | 124 | 3 | 200 | 376 | 25 | 203 | 1.79e-15 | 78.2 |
| MS.gene043181.t1 | MTR_2g098880 | 40.909 | 110 | 63 | 2 | 186 | 294 | 55 | 163 | 1.32e-13 | 71.2 |
| MS.gene043181.t1 | MTR_2g098880 | 40.909 | 110 | 63 | 2 | 186 | 294 | 67 | 175 | 1.74e-13 | 71.2 |
| MS.gene043181.t1 | MTR_6g053140 | 30.519 | 154 | 94 | 3 | 134 | 285 | 47 | 189 | 5.12e-13 | 68.9 |
| MS.gene043181.t1 | MTR_0060s0090 | 37.500 | 80 | 50 | 0 | 195 | 274 | 59 | 138 | 6.82e-13 | 67.0 |
| MS.gene043181.t1 | MTR_1g008290 | 32.787 | 122 | 77 | 2 | 252 | 373 | 10 | 126 | 1.94e-12 | 65.5 |
| MS.gene043181.t1 | MTR_3g448650 | 41.250 | 80 | 47 | 0 | 188 | 267 | 78 | 157 | 2.17e-12 | 66.2 |
| MS.gene043181.t1 | MTR_3g080590 | 50.000 | 58 | 29 | 0 | 185 | 242 | 98 | 155 | 1.29e-11 | 63.2 |
| MS.gene043181.t1 | MTR_6g072520 | 47.573 | 103 | 51 | 2 | 1 | 102 | 1 | 101 | 1.64e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043181.t1 | AT4G38180 | 36.612 | 183 | 112 | 4 | 196 | 376 | 77 | 257 | 9.81e-19 | 90.5 |
| MS.gene043181.t1 | AT1G10240 | 33.333 | 162 | 102 | 4 | 198 | 354 | 54 | 214 | 1.93e-13 | 73.6 |
| MS.gene043181.t1 | AT1G10240 | 33.333 | 162 | 102 | 4 | 198 | 354 | 54 | 214 | 1.93e-13 | 73.6 |
| MS.gene043181.t1 | AT3G07500 | 37.500 | 136 | 75 | 5 | 165 | 297 | 8 | 136 | 3.47e-12 | 66.6 |
| MS.gene043181.t1 | AT5G28530 | 28.571 | 161 | 111 | 3 | 198 | 355 | 61 | 220 | 2.78e-11 | 66.6 |
| MS.gene043181.t1 | AT5G28530 | 28.571 | 161 | 111 | 3 | 198 | 355 | 61 | 220 | 2.78e-11 | 66.6 |
| MS.gene043181.t1 | AT5G28530 | 28.571 | 161 | 111 | 3 | 198 | 355 | 61 | 220 | 3.07e-11 | 66.6 |
| MS.gene043181.t1 | AT5G28530 | 28.571 | 161 | 111 | 3 | 198 | 355 | 61 | 220 | 4.08e-11 | 65.9 |
| MS.gene043181.t1 | AT5G28530 | 28.571 | 161 | 111 | 3 | 198 | 355 | 61 | 220 | 4.63e-11 | 65.9 |
Find 96 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATGACTTTACGGATTT+TGG | 0.057115 | 4.2:+71164010 | MS.gene043181:CDS |
| AATAAGAACTTGTCATATAA+TGG | 0.240494 | 4.2:+71164972 | MS.gene043181:CDS |
| TGTTCATTACAGACCCAAAA+AGG | 0.267321 | 4.2:+71164813 | MS.gene043181:CDS |
| CCTGAAGTTCCAATTGTTAC+TGG | 0.294336 | 4.2:+71166419 | MS.gene043181:CDS |
| TTTGTTGCGTTGGACGAAAA+AGG | 0.308114 | 4.2:+71166214 | MS.gene043181:CDS |
| TTGCAGGGAAGTGTCCAAAA+AGG | 0.313369 | 4.2:+71166337 | MS.gene043181:CDS |
| AGTGATGATGGTGGTTGTTC+TGG | 0.317361 | 4.2:+71164232 | MS.gene043181:CDS |
| CATTAACTGCTGAAGGAATA+AGG | 0.318241 | 4.2:+71164557 | MS.gene043181:CDS |
| TGCTGAAGGAATAAGGAAAA+TGG | 0.318497 | 4.2:+71164564 | MS.gene043181:CDS |
| CCAGTAACAATTGGAACTTC+AGG | 0.318979 | 4.2:-71166419 | None:intergenic |
| AAACAACAACAATGACTTTA+CGG | 0.325210 | 4.2:+71164003 | MS.gene043181:CDS |
| CTGTTAGGAAGAGTGATATT+AGG | 0.340554 | 4.2:+71164650 | MS.gene043181:CDS |
| CGCAACAAAATCAAACATTC+TGG | 0.341835 | 4.2:-71166200 | None:intergenic |
| CATTGGTTGGAGTAGGTTCA+TGG | 0.364482 | 4.2:-71164873 | None:intergenic |
| ATAAGAACTTGTCATATAAT+GGG | 0.396367 | 4.2:+71164973 | MS.gene043181:CDS |
| TTGATAGAGATTGCTCGATA+TGG | 0.396982 | 4.2:+71166287 | MS.gene043181:CDS |
| GTTGAGTTTCCAGTAACAAT+TGG | 0.399158 | 4.2:-71166428 | None:intergenic |
| AGCATTTATCAAGGTTAGAT+AGG | 0.409294 | 4.2:+71164740 | MS.gene043181:CDS |
| GGATGACATACAAAAGCTTC+AGG | 0.411801 | 4.2:+71166382 | MS.gene043181:CDS |
| GATTATAGTGCTGGTGATAA+AGG | 0.421954 | 4.2:+71164256 | MS.gene043181:CDS |
| GGTACACCGAAACATGATTA+CGG | 0.433163 | 4.2:+71164031 | MS.gene043181:CDS |
| CAGTAACAATTGGAACTTCA+GGG | 0.439435 | 4.2:-71166418 | None:intergenic |
| AAGAATACTCAAAGGAATAC+AGG | 0.444542 | 4.2:+71164175 | MS.gene043181:CDS |
| CGAGGCTGCTGAAATCTATA+CGG | 0.448201 | 4.2:+71165932 | MS.gene043181:CDS |
| GATATTAGGCGCAATGTTAA+CGG | 0.449906 | 4.2:+71164664 | MS.gene043181:CDS |
| GCTCAGAAGGGAGGATATCC+TGG | 0.452783 | 4.2:+71165006 | MS.gene043181:CDS |
| TATAAGTACGGTAAGTGTAA+AGG | 0.460291 | 4.2:+71164622 | MS.gene043181:CDS |
| GGGATACATGGTGGCTCAGA+AGG | 0.464555 | 4.2:+71164993 | MS.gene043181:CDS |
| TAATGAACACGGAGCCTAGC+TGG | 0.466097 | 4.2:-71164799 | None:intergenic |
| GATGAGCGATATGATGAAAC+TGG | 0.468588 | 4.2:+71164199 | MS.gene043181:CDS |
| GAAACATATCCGATCATTGT+TGG | 0.469215 | 4.2:+71164079 | MS.gene043181:CDS |
| TCTTGAATGTGGACTATTGT+GGG | 0.469444 | 4.2:+71166249 | MS.gene043181:CDS |
| GTAGATAAAGCACAGATTGA+TGG | 0.478198 | 4.2:+71164934 | MS.gene043181:CDS |
| TGATTACGGTTCTACGGATG+TGG | 0.481654 | 4.2:+71164045 | MS.gene043181:CDS |
| CCGATCATTGTTGGGAGTGA+TGG | 0.481709 | 4.2:+71164088 | MS.gene043181:CDS |
| TGTTCTGGTGATTATAGTGC+TGG | 0.489646 | 4.2:+71164247 | MS.gene043181:CDS |
| TTCTTGAATGTGGACTATTG+TGG | 0.490201 | 4.2:+71166248 | MS.gene043181:CDS |
| CGCAGATGACTTGTCAGCAC+AGG | 0.491267 | 4.2:-71165897 | None:intergenic |
| AAACATATCCGATCATTGTT+GGG | 0.491804 | 4.2:+71164080 | MS.gene043181:CDS |
| GAGCGAAGAAGCATTTATCA+AGG | 0.496128 | 4.2:+71164731 | MS.gene043181:CDS |
| AGGGAGGATATCCTGGTGTT+GGG | 0.496604 | 4.2:+71165013 | MS.gene043181:CDS |
| TGTAGTTGTTGGTGAGGAAA+TGG | 0.504666 | 4.2:+71164522 | MS.gene043181:CDS |
| GAAGATGATGATGTAGTTGT+TGG | 0.505754 | 4.2:+71164511 | MS.gene043181:CDS |
| GTGAAAGAAGAGATTATGAA+AGG | 0.507624 | 4.2:+71165972 | MS.gene043181:CDS |
| GCAGCATGTATGCAACAAGC+AGG | 0.510918 | 4.2:+71164702 | MS.gene043181:CDS |
| GTAGAACCGTAATCATGTTT+CGG | 0.514557 | 4.2:-71164037 | None:intergenic |
| ATAAATTCATTAACTGCTGA+AGG | 0.519495 | 4.2:+71164550 | MS.gene043181:CDS |
| AAGGGAGGATATCCTGGTGT+TGG | 0.520377 | 4.2:+71165012 | MS.gene043181:CDS |
| GATGAAAGTCAAGGTGTTGA+AGG | 0.526322 | 4.2:+71164301 | MS.gene043181:CDS |
| CCATCACTCCCAACAATGAT+CGG | 0.546136 | 4.2:-71164088 | None:intergenic |
| TAGCTTGTATGCAGATGTGC+TGG | 0.548592 | 4.2:+71166361 | MS.gene043181:CDS |
| GAAACATGATTACGGTTCTA+CGG | 0.552732 | 4.2:+71164039 | MS.gene043181:CDS |
| TTGTCATATAATGGGATACA+TGG | 0.555297 | 4.2:+71164981 | MS.gene043181:CDS |
| GAAGATTGGTTTCTTGAATG+TGG | 0.561039 | 4.2:+71166238 | MS.gene043181:CDS |
| TGTAAATGCACAGCATTGGT+TGG | 0.565762 | 4.2:-71164886 | None:intergenic |
| TTCTTAGTGAACCCAACACC+AGG | 0.567834 | 4.2:-71165024 | None:intergenic |
| TTGTTGGTGAGGAAATGGTA+AGG | 0.572827 | 4.2:+71164527 | MS.gene043181:CDS |
| CAGCATGTATGCAACAAGCA+GGG | 0.579718 | 4.2:+71164703 | MS.gene043181:CDS |
| AGGGTGTAAATGCACAGCAT+TGG | 0.584309 | 4.2:-71164890 | None:intergenic |
| GATGAACGTGAAGGTGATGA+AGG | 0.589312 | 4.2:+71164361 | MS.gene043181:CDS |
| GATGAAGGTGAACGTGATGA+AGG | 0.589312 | 4.2:+71164376 | MS.gene043181:CDS |
| GGTGATAAAGGTGAAGATGA+TGG | 0.589452 | 4.2:+71164268 | MS.gene043181:CDS |
| GTTGAAGGTGAACGTGATGA+AGG | 0.592601 | 4.2:+71164316 | MS.gene043181:CDS |
| GAAGGTGAACGTGATGAAGG+TGG | 0.592672 | 4.2:+71164379 | MS.gene043181:CDS |
| ATGCGTGCTGTTATTAAGGA+TGG | 0.593265 | 4.2:+71165075 | MS.gene043181:CDS |
| GCAGATGACTTGTCAGCACA+GGG | 0.599194 | 4.2:-71165896 | None:intergenic |
| GGATACATGGTGGCTCAGAA+GGG | 0.608168 | 4.2:+71164994 | MS.gene043181:CDS |
| TACATGGTGGCTCAGAAGGG+AGG | 0.608623 | 4.2:+71164997 | MS.gene043181:CDS |
| GGAGACAATGAAAGTGATGA+TGG | 0.609236 | 4.2:+71164220 | MS.gene043181:CDS |
| AATCTGTGCTTTATCTACCT+CGG | 0.613894 | 4.2:-71164929 | None:intergenic |
| AGTGAAGGTCATGGTAGTGA+AGG | 0.614950 | 4.2:+71164472 | MS.gene043181:CDS |
| AGCATGTATGCAACAAGCAG+GGG | 0.616160 | 4.2:+71164704 | MS.gene043181:CDS |
| TCTGCGTTGTCTTGAACGCG+AGG | 0.617404 | 4.2:+71165914 | MS.gene043181:CDS |
| TGCACAGCATTGGTTGGAGT+AGG | 0.638605 | 4.2:-71164880 | None:intergenic |
| TGTTACTGGAAACTCAACAA+TGG | 0.640006 | 4.2:+71166433 | MS.gene043181:CDS |
| CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | 4.2:+71164785 | MS.gene043181:CDS |
| GGTGAACGTGATGAAGGTGG+AGG | 0.647603 | 4.2:+71164382 | MS.gene043181:CDS |
| TGATGATGTAGTTGTTGGTG+AGG | 0.665725 | 4.2:+71164516 | MS.gene043181:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 4.2:+71164418 | MS.gene043181:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 4.2:+71164463 | MS.gene043181:CDS |
| TCATATAATGGGATACATGG+TGG | 0.669224 | 4.2:+71164984 | MS.gene043181:CDS |
| CTTGAATGTGGACTATTGTG+GGG | 0.678410 | 4.2:+71166250 | MS.gene043181:CDS |
| TTAACGGTGAGATTGTAATG+AGG | 0.680367 | 4.2:+71164680 | MS.gene043181:CDS |
| GATGATGATGATGTGAGTCA+TGG | 0.683220 | 4.2:+71164142 | MS.gene043181:CDS |
| ACTTTGTACGAGTGAGACGT+CGG | 0.685988 | 4.2:-71164774 | None:intergenic |
| AGGTGTTGCACTGAGTGTGA+AGG | 0.686205 | 4.2:+71165992 | MS.gene043181:CDS |
| AGTGAAGTTGATGAAAGTGA+AGG | 0.694719 | 4.2:+71164442 | MS.gene043181:CDS |
| CTGGCAATGGATCACGTACG+TGG | 0.695647 | 4.2:-71166457 | None:intergenic |
| GGTGGAGGTGATGAAAGTGA+AGG | 0.700815 | 4.2:+71164397 | MS.gene043181:CDS |
| GACAATGAAAGTGATGATGG+TGG | 0.706532 | 4.2:+71164223 | MS.gene043181:CDS |
| GGTGAAAGTGATGAAAGTGA+AGG | 0.717258 | 4.2:+71164337 | MS.gene043181:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 4.2:+71164412 | MS.gene043181:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 4.2:+71164457 | MS.gene043181:CDS |
| AGTGAAGGTGATGAACGTGA+AGG | 0.728116 | 4.2:+71164352 | MS.gene043181:CDS |
| AGTGAATGTGATGAAAGTCA+AGG | 0.739796 | 4.2:+71164292 | MS.gene043181:CDS |
| CAGATGACTTGTCAGCACAG+GGG | 0.782091 | 4.2:-71165895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAATAAAAACTTATATG+TGG | + | chr4.2:71165367-71165386 | MS.gene043181:intron | 15.0% |
| !! | AACAATAAAAACTTATATGT+GGG | + | chr4.2:71165368-71165387 | MS.gene043181:intron | 15.0% |
| !! | CTTCAACATAAAAAAAATAT+GGG | - | chr4.2:71166159-71166178 | None:intergenic | 15.0% |
| !!! | TACGATTTTTATTATAAGTA+CGG | + | chr4.2:71164610-71164629 | MS.gene043181:CDS | 15.0% |
| !! | AAATCATAAAGAGTTATGTT+AGG | + | chr4.2:71165772-71165791 | MS.gene043181:intron | 20.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | + | chr4.2:71164972-71164991 | MS.gene043181:CDS | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | + | chr4.2:71164973-71164992 | MS.gene043181:CDS | 20.0% |
| !! | CCTTCAACATAAAAAAAATA+TGG | - | chr4.2:71166160-71166179 | None:intergenic | 20.0% |
| !!! | CCATATTTTTTTTATGTTGA+AGG | + | chr4.2:71166157-71166176 | MS.gene043181:intron | 20.0% |
| !!! | TATCAAGAATTAAGCTTTTT+TGG | + | chr4.2:71165545-71165564 | MS.gene043181:intron | 20.0% |
| ! | AAACAACAACAATGACTTTA+CGG | + | chr4.2:71164003-71164022 | MS.gene043181:CDS | 25.0% |
| ! | ATAAAAAAAATATGGGAGCA+TGG | - | chr4.2:71166152-71166171 | None:intergenic | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | + | chr4.2:71164550-71164569 | MS.gene043181:CDS | 25.0% |
| ! | ATATGAGAACAAAGAATTGT+GGG | + | chr4.2:71165680-71165699 | MS.gene043181:intron | 25.0% |
| ! | CAAATATAACTATTTGTGAG+TGG | - | chr4.2:71165326-71165345 | None:intergenic | 25.0% |
| ! | CACTCACAAATAGTTATATT+TGG | + | chr4.2:71165324-71165343 | MS.gene043181:intron | 25.0% |
| ! | GAAGTTGACAAAATATCTTT+AGG | + | chr4.2:71166046-71166065 | MS.gene043181:intron | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | + | chr4.2:71165581-71165600 | MS.gene043181:intron | 25.0% |
| !! | ATGTGTTTACAAATTTTTGC+AGG | + | chr4.2:71166321-71166340 | MS.gene043181:CDS | 25.0% |
| !! | TGTGTTTACAAATTTTTGCA+GGG | + | chr4.2:71166322-71166341 | MS.gene043181:CDS | 25.0% |
| !! | TTCTTTGTTCTCATATGTTT+TGG | - | chr4.2:71165676-71165695 | None:intergenic | 25.0% |
| !! | TTGACAAAATATCTTTAGGA+AGG | + | chr4.2:71166050-71166069 | MS.gene043181:intron | 25.0% |
| !!! | AAGAATTAAGCTTTTTTGGA+AGG | + | chr4.2:71165549-71165568 | MS.gene043181:intron | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | + | chr4.2:71165185-71165204 | MS.gene043181:intron | 25.0% |
| !!! | ATTTCTGCATAATTTTGATG+AGG | + | chr4.2:71165815-71165834 | MS.gene043181:intron | 25.0% |
| !!! | ATTTTAGGAAGAATACTCAA+AGG | + | chr4.2:71164167-71164186 | MS.gene043181:CDS | 25.0% |
| AAACATATCCGATCATTGTT+GGG | + | chr4.2:71164080-71164099 | MS.gene043181:CDS | 30.0% | |
| AAGAATACTCAAAGGAATAC+AGG | + | chr4.2:71164175-71164194 | MS.gene043181:CDS | 30.0% | |
| AAGAGTTATGTTAGGAAGAA+AGG | + | chr4.2:71165780-71165799 | MS.gene043181:intron | 30.0% | |
| AGCATTTATCAAGGTTAGAT+AGG | + | chr4.2:71164740-71164759 | MS.gene043181:CDS | 30.0% | |
| CATATGAGAACAAAGAATTG+TGG | + | chr4.2:71165679-71165698 | MS.gene043181:intron | 30.0% | |
| GAATATTCACAAAAGGAATG+TGG | - | chr4.2:71165150-71165169 | None:intergenic | 30.0% | |
| GTGAAAGAAGAGATTATGAA+AGG | + | chr4.2:71165972-71165991 | MS.gene043181:CDS | 30.0% | |
| TATAAGTACGGTAAGTGTAA+AGG | + | chr4.2:71164622-71164641 | MS.gene043181:CDS | 30.0% | |
| TGTTTATCGAAAAATATCCG+AGG | + | chr4.2:71164912-71164931 | MS.gene043181:CDS | 30.0% | |
| ! | AAAAATGCGTGCTGTTATTA+AGG | + | chr4.2:71165071-71165090 | MS.gene043181:CDS | 30.0% |
| ! | AACAATGACTTTACGGATTT+TGG | + | chr4.2:71164010-71164029 | MS.gene043181:CDS | 30.0% |
| ! | AATGTACTCTAATTTTACGG+AGG | + | chr4.2:71165584-71165603 | MS.gene043181:intron | 30.0% |
| ! | ACAACATATCTACCCTTTTT+GGG | - | chr4.2:71164829-71164848 | None:intergenic | 30.0% |
| ! | ACCAGTTTTCTAGATTGTAT+GGG | + | chr4.2:71165396-71165415 | MS.gene043181:intron | 30.0% |
| ! | AGGATGAATTTGAAGAGTTT+TGG | + | chr4.2:71165604-71165623 | MS.gene043181:intron | 30.0% |
| ! | ATGTGAGTCATGGTAATTTT+AGG | + | chr4.2:71164152-71164171 | MS.gene043181:CDS | 30.0% |
| ! | GATGAATTTGAAGAGTTTTG+GGG | + | chr4.2:71165606-71165625 | MS.gene043181:intron | 30.0% |
| ! | GGATGAATTTGAAGAGTTTT+GGG | + | chr4.2:71165605-71165624 | MS.gene043181:intron | 30.0% |
| ! | TTGTCATATAATGGGATACA+TGG | + | chr4.2:71164981-71165000 | MS.gene043181:CDS | 30.0% |
| !! | AATGTTTGATTTTGTTGCGT+TGG | + | chr4.2:71166204-71166223 | MS.gene043181:CDS | 30.0% |
| !! | AGATCAGATTATTTCTGCTT+TGG | + | chr4.2:71165222-71165241 | MS.gene043181:intron | 30.0% |
| !! | ATGAATTTGAAGAGTTTTGG+GGG | + | chr4.2:71165607-71165626 | MS.gene043181:intron | 30.0% |
| !! | CGGATATTTTTCGATAAACA+GGG | - | chr4.2:71164912-71164931 | None:intergenic | 30.0% |
| !! | GACGTTTGAAATGTCTATTT+TGG | + | chr4.2:71165184-71165203 | MS.gene043181:intron | 30.0% |
| !! | TCGGATATTTTTCGATAAAC+AGG | - | chr4.2:71164913-71164932 | None:intergenic | 30.0% |
| !! | TTGTAGCTGATTTTAAATCC+AGG | + | chr4.2:71165865-71165884 | MS.gene043181:intron | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | + | chr4.2:71164844-71164863 | MS.gene043181:CDS | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | + | chr4.2:71164843-71164862 | MS.gene043181:CDS | 30.0% |
| AATCTGTGCTTTATCTACCT+CGG | - | chr4.2:71164932-71164951 | None:intergenic | 35.0% | |
| AGTGAATGTGATGAAAGTCA+AGG | + | chr4.2:71164292-71164311 | MS.gene043181:CDS | 35.0% | |
| AGTGGCAGAATATTCACAAA+AGG | - | chr4.2:71165157-71165176 | None:intergenic | 35.0% | |
| CAAGAAATTTGAATCTCGAG+GGG | + | chr4.2:71166124-71166143 | MS.gene043181:intron | 35.0% | |
| CAGTAACAATTGGAACTTCA+GGG | - | chr4.2:71166421-71166440 | None:intergenic | 35.0% | |
| CATTAACTGCTGAAGGAATA+AGG | + | chr4.2:71164557-71164576 | MS.gene043181:CDS | 35.0% | |
| CCAAAAGCAGTTATAACAGA+TGG | + | chr4.2:71165429-71165448 | MS.gene043181:intron | 35.0% | |
| CGCAACAAAATCAAACATTC+TGG | - | chr4.2:71166203-71166222 | None:intergenic | 35.0% | |
| CTGTTAGGAAGAGTGATATT+AGG | + | chr4.2:71164650-71164669 | MS.gene043181:CDS | 35.0% | |
| GAAACATATCCGATCATTGT+TGG | + | chr4.2:71164079-71164098 | MS.gene043181:CDS | 35.0% | |
| GAAACATGATTACGGTTCTA+CGG | + | chr4.2:71164039-71164058 | MS.gene043181:CDS | 35.0% | |
| GATATTAGGCGCAATGTTAA+CGG | + | chr4.2:71164664-71164683 | MS.gene043181:CDS | 35.0% | |
| GCAAGAAATTTGAATCTCGA+GGG | + | chr4.2:71166123-71166142 | MS.gene043181:intron | 35.0% | |
| GCATCTAAACAAGAATGCTA+TGG | + | chr4.2:71165518-71165537 | MS.gene043181:intron | 35.0% | |
| GTAGAACCGTAATCATGTTT+CGG | - | chr4.2:71164040-71164059 | None:intergenic | 35.0% | |
| GTAGATAAAGCACAGATTGA+TGG | + | chr4.2:71164934-71164953 | MS.gene043181:CDS | 35.0% | |
| GTGAAGGAAAAAGAAGTGAA+TGG | + | chr4.2:71166008-71166027 | MS.gene043181:intron | 35.0% | |
| GTTCATTACAGACCCAAAAA+GGG | + | chr4.2:71164814-71164833 | MS.gene043181:CDS | 35.0% | |
| GTTGAGTTTCCAGTAACAAT+TGG | - | chr4.2:71166431-71166450 | None:intergenic | 35.0% | |
| TCCCATACAATCTAGAAAAC+TGG | - | chr4.2:71165400-71165419 | None:intergenic | 35.0% | |
| TGCAAGAAATTTGAATCTCG+AGG | + | chr4.2:71166122-71166141 | MS.gene043181:intron | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | + | chr4.2:71164564-71164583 | MS.gene043181:CDS | 35.0% | |
| TGTTACTGGAAACTCAACAA+TGG | + | chr4.2:71166433-71166452 | MS.gene043181:CDS | 35.0% | |
| TGTTCATTACAGACCCAAAA+AGG | + | chr4.2:71164813-71164832 | MS.gene043181:CDS | 35.0% | |
| TTAACGGTGAGATTGTAATG+AGG | + | chr4.2:71164680-71164699 | MS.gene043181:CDS | 35.0% | |
| TTGATAGAGATTGCTCGATA+TGG | + | chr4.2:71166287-71166306 | MS.gene043181:CDS | 35.0% | |
| ! | CACAACATATCTACCCTTTT+TGG | - | chr4.2:71164830-71164849 | None:intergenic | 35.0% |
| ! | CCATCTGTTATAACTGCTTT+TGG | - | chr4.2:71165432-71165451 | None:intergenic | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | + | chr4.2:71164511-71164530 | MS.gene043181:CDS | 35.0% |
| ! | GACCAGTTTTCTAGATTGTA+TGG | + | chr4.2:71165395-71165414 | MS.gene043181:intron | 35.0% |
| ! | TCATATAATGGGATACATGG+TGG | + | chr4.2:71164984-71165003 | MS.gene043181:CDS | 35.0% |
| ! | TCTTGAATGTGGACTATTGT+GGG | + | chr4.2:71166249-71166268 | MS.gene043181:CDS | 35.0% |
| ! | TTCTTGAATGTGGACTATTG+TGG | + | chr4.2:71166248-71166267 | MS.gene043181:CDS | 35.0% |
| !! | AAATGTCTATTTTGGGCAGA+TGG | + | chr4.2:71165192-71165211 | MS.gene043181:intron | 35.0% |
| !! | AATTTTGATGAGGCAATGAG+AGG | + | chr4.2:71165825-71165844 | MS.gene043181:intron | 35.0% |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | + | chr4.2:71164442-71164461 | MS.gene043181:CDS | 35.0% |
| !! | AGTTATATTTGGTGCTGCAT+TGG | + | chr4.2:71165335-71165354 | MS.gene043181:intron | 35.0% |
| !! | GAAGATTGGTTTCTTGAATG+TGG | + | chr4.2:71166238-71166257 | MS.gene043181:CDS | 35.0% |
| !! | GATTATAGTGCTGGTGATAA+AGG | + | chr4.2:71164256-71164275 | MS.gene043181:CDS | 35.0% |
| !! | TTTTGGGTCTGTAATGAACA+CGG | - | chr4.2:71164813-71164832 | None:intergenic | 35.0% |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | + | chr4.2:71164635-71164654 | MS.gene043181:CDS | 35.0% |
| !!! | TCATATGTTTTGGTAACCCA+TGG | - | chr4.2:71165666-71165685 | None:intergenic | 35.0% |
| !!! | TGAATTTGAAGAGTTTTGGG+GGG | + | chr4.2:71165608-71165627 | MS.gene043181:intron | 35.0% |
| ACAAAATCACCAACGGATAG+TGG | - | chr4.2:71165290-71165309 | None:intergenic | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | + | chr4.2:71164412-71164431 | MS.gene043181:CDS | 40.0% | |
| ATTGCCTTGAGAACAATCCA+TGG | + | chr4.2:71165646-71165665 | MS.gene043181:intron | 40.0% | |
| CCAGTAACAATTGGAACTTC+AGG | - | chr4.2:71166422-71166441 | None:intergenic | 40.0% | |
| CCTGAAGTTCCAATTGTTAC+TGG | + | chr4.2:71166419-71166438 | MS.gene043181:CDS | 40.0% | |
| GAACAAATACCACTATCCGT+TGG | + | chr4.2:71165278-71165297 | MS.gene043181:intron | 40.0% | |
| GAATATTCTGCCACTGATGA+CGG | + | chr4.2:71165162-71165181 | MS.gene043181:intron | 40.0% | |
| GATGAGCGATATGATGAAAC+TGG | + | chr4.2:71164199-71164218 | MS.gene043181:CDS | 40.0% | |
| GCAGTTATAACAGATGGTGA+TGG | + | chr4.2:71165435-71165454 | MS.gene043181:intron | 40.0% | |
| GGAGACAATGAAAGTGATGA+TGG | + | chr4.2:71164220-71164239 | MS.gene043181:CDS | 40.0% | |
| GGATGACATACAAAAGCTTC+AGG | + | chr4.2:71166382-71166401 | MS.gene043181:CDS | 40.0% | |
| GGTACACCGAAACATGATTA+CGG | + | chr4.2:71164031-71164050 | MS.gene043181:CDS | 40.0% | |
| GGTGAAAGTGATGAAAGTGA+AGG | + | chr4.2:71164337-71164356 | MS.gene043181:CDS | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | + | chr4.2:71164268-71164287 | MS.gene043181:CDS | 40.0% | |
| TGTTCTGGTGATTATAGTGC+TGG | + | chr4.2:71164247-71164266 | MS.gene043181:CDS | 40.0% | |
| TTGCCTTGAGAACAATCCAT+GGG | + | chr4.2:71165647-71165666 | MS.gene043181:intron | 40.0% | |
| TTTGTTGCGTTGGACGAAAA+AGG | + | chr4.2:71166214-71166233 | MS.gene043181:CDS | 40.0% | |
| ! | ATGCGTGCTGTTATTAAGGA+TGG | + | chr4.2:71165075-71165094 | MS.gene043181:CDS | 40.0% |
| ! | CTTGAATGTGGACTATTGTG+GGG | + | chr4.2:71166250-71166269 | MS.gene043181:CDS | 40.0% |
| ! | GATGATGATGATGTGAGTCA+TGG | + | chr4.2:71164142-71164161 | MS.gene043181:CDS | 40.0% |
| ! | TAACCCATGGATTGTTCTCA+AGG | - | chr4.2:71165653-71165672 | None:intergenic | 40.0% |
| ! | TGATGATGTAGTTGTTGGTG+AGG | + | chr4.2:71164516-71164535 | MS.gene043181:CDS | 40.0% |
| ! | TGCATACAAGCTACCCTTTT+TGG | - | chr4.2:71166354-71166373 | None:intergenic | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | + | chr4.2:71164522-71164541 | MS.gene043181:CDS | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | + | chr4.2:71164527-71164546 | MS.gene043181:CDS | 40.0% |
| !! | AGATGGTGATGGTTCTATGA+GGG | + | chr4.2:71165446-71165465 | MS.gene043181:intron | 40.0% |
| !! | GACAATGAAAGTGATGATGG+TGG | + | chr4.2:71164223-71164242 | MS.gene043181:CDS | 40.0% |
| !! | GAGCGAAGAAGCATTTATCA+AGG | + | chr4.2:71164731-71164750 | MS.gene043181:CDS | 40.0% |
| !! | GATGAAAGTCAAGGTGTTGA+AGG | + | chr4.2:71164301-71164320 | MS.gene043181:CDS | 40.0% |
| !! | TGTAAATGCACAGCATTGGT+TGG | - | chr4.2:71164889-71164908 | None:intergenic | 40.0% |
| !! | TTATTTCTGCTTTGGCGATG+TGG | + | chr4.2:71165230-71165249 | MS.gene043181:intron | 40.0% |
| !!! | TATCCGTTGGTGATTTTGTC+TGG | + | chr4.2:71165291-71165310 | MS.gene043181:intron | 40.0% |
| ACTTTGTACGAGTGAGACGT+CGG | - | chr4.2:71164777-71164796 | None:intergenic | 45.0% | |
| AGCATGTATGCAACAAGCAG+GGG | + | chr4.2:71164704-71164723 | MS.gene043181:CDS | 45.0% | |
| AGGGTGTAAATGCACAGCAT+TGG | - | chr4.2:71164893-71164912 | None:intergenic | 45.0% | |
| AGTGAAGGTGATGAACGTGA+AGG | + | chr4.2:71164352-71164371 | MS.gene043181:CDS | 45.0% | |
| CAGCATGTATGCAACAAGCA+GGG | + | chr4.2:71164703-71164722 | MS.gene043181:CDS | 45.0% | |
| CAGCCAGACAAAATCACCAA+CGG | - | chr4.2:71165297-71165316 | None:intergenic | 45.0% | |
| CCATCACTCCCAACAATGAT+CGG | - | chr4.2:71164091-71164110 | None:intergenic | 45.0% | |
| CGAGGCTGCTGAAATCTATA+CGG | + | chr4.2:71165932-71165951 | MS.gene043181:CDS | 45.0% | |
| GATGAACGTGAAGGTGATGA+AGG | + | chr4.2:71164361-71164380 | MS.gene043181:CDS | 45.0% | |
| GATGAAGGTGAACGTGATGA+AGG | + | chr4.2:71164376-71164395 | MS.gene043181:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | + | chr4.2:71164418-71164437 | MS.gene043181:CDS | 45.0% | |
| GTTGAAGGTGAACGTGATGA+AGG | + | chr4.2:71164316-71164335 | MS.gene043181:CDS | 45.0% | |
| TACCTGCGTGACGATTTCTT+TGG | + | chr4.2:71165711-71165730 | MS.gene043181:intron | 45.0% | |
| TGATTACGGTTCTACGGATG+TGG | + | chr4.2:71164045-71164064 | MS.gene043181:CDS | 45.0% | |
| TGGACGAAAAAGGCGAAGAT+TGG | + | chr4.2:71166224-71166243 | MS.gene043181:CDS | 45.0% | |
| TTCTATGAGGGAGGCGATAA+AGG | + | chr4.2:71165458-71165477 | MS.gene043181:intron | 45.0% | |
| TTCTTAGTGAACCCAACACC+AGG | - | chr4.2:71165027-71165046 | None:intergenic | 45.0% | |
| TTTCAAACGTCCGTCATCAG+TGG | - | chr4.2:71165175-71165194 | None:intergenic | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | + | chr4.2:71164427-71164446 | MS.gene043181:CDS | 45.0% |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | - | chr4.2:71164876-71164895 | None:intergenic | 45.0% |
| ! | TAGCTTGTATGCAGATGTGC+TGG | + | chr4.2:71166361-71166380 | MS.gene043181:CDS | 45.0% |
| !! | AGTGATGATGGTGGTTGTTC+TGG | + | chr4.2:71164232-71164251 | MS.gene043181:CDS | 45.0% |
| !! | ATTTGGTGCTGCATTGGTGA+TGG | + | chr4.2:71165341-71165360 | MS.gene043181:intron | 45.0% |
| !! | CAGATGGTGATGGTTCTATG+AGG | + | chr4.2:71165445-71165464 | MS.gene043181:intron | 45.0% |
| !! | TGCAGGGAAGTGTCCAAAAA+GGG | + | chr4.2:71166338-71166357 | MS.gene043181:CDS | 45.0% |
| !! | TTGCAGGGAAGTGTCCAAAA+AGG | + | chr4.2:71166337-71166356 | MS.gene043181:CDS | 45.0% |
| AAGGGAGGATATCCTGGTGT+TGG | + | chr4.2:71165012-71165031 | MS.gene043181:CDS | 50.0% | |
| AGGGAGGATATCCTGGTGTT+GGG | + | chr4.2:71165013-71165032 | MS.gene043181:CDS | 50.0% | |
| CACCAAAGAAATCGTCACGC+AGG | - | chr4.2:71165716-71165735 | None:intergenic | 50.0% | |
| CATAGACGATGACGCGTACT+TGG | - | chr4.2:71165492-71165511 | None:intergenic | 50.0% | |
| CCGATCATTGTTGGGAGTGA+TGG | + | chr4.2:71164088-71164107 | MS.gene043181:CDS | 50.0% | |
| CTGCGTGACGATTTCTTTGG+TGG | + | chr4.2:71165714-71165733 | MS.gene043181:intron | 50.0% | |
| GAAGGTGAACGTGATGAAGG+TGG | + | chr4.2:71164319-71164338 | MS.gene043181:CDS | 50.0% | |
| GCAGCATGTATGCAACAAGC+AGG | + | chr4.2:71164702-71164721 | MS.gene043181:CDS | 50.0% | |
| GGATACATGGTGGCTCAGAA+GGG | + | chr4.2:71164994-71165013 | MS.gene043181:CDS | 50.0% | |
| GGTGGAGGTGATGAAAGTGA+AGG | + | chr4.2:71164397-71164416 | MS.gene043181:CDS | 50.0% | |
| TAATGAACACGGAGCCTAGC+TGG | - | chr4.2:71164802-71164821 | None:intergenic | 50.0% | |
| TATGAGGGAGGCGATAAAGG+CGG | + | chr4.2:71165461-71165480 | MS.gene043181:intron | 50.0% | |
| ! | AGGTGTTGCACTGAGTGTGA+AGG | + | chr4.2:71165992-71166011 | MS.gene043181:CDS | 50.0% |
| ! | CAGATGACTTGTCAGCACAG+GGG | - | chr4.2:71165898-71165917 | None:intergenic | 50.0% |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | + | chr4.2:71164785-71164804 | MS.gene043181:CDS | 50.0% |
| ! | GCAGATGACTTGTCAGCACA+GGG | - | chr4.2:71165899-71165918 | None:intergenic | 50.0% |
| !! | TGCACAGCATTGGTTGGAGT+AGG | - | chr4.2:71164883-71164902 | None:intergenic | 50.0% |
| !! | TGGTGATGGTTCTATGAGGG+AGG | + | chr4.2:71165449-71165468 | MS.gene043181:intron | 50.0% |
| !!! | TGAAGAGTTTTGGGGGGACT+TGG | + | chr4.2:71165614-71165633 | MS.gene043181:intron | 50.0% |
| CAGCACAGGGGATGAAAACC+TGG | - | chr4.2:71165886-71165905 | None:intergenic | 55.0% | |
| CGCGTCATCGTCTATGTGCT+TGG | + | chr4.2:71165496-71165515 | MS.gene043181:intron | 55.0% | |
| CTGGCAATGGATCACGTACG+TGG | - | chr4.2:71166460-71166479 | None:intergenic | 55.0% | |
| GCTCAGAAGGGAGGATATCC+TGG | + | chr4.2:71165006-71165025 | MS.gene043181:CDS | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | + | chr4.2:71164993-71165012 | MS.gene043181:CDS | 55.0% | |
| GGTGAACGTGATGAAGGTGG+AGG | + | chr4.2:71164382-71164401 | MS.gene043181:CDS | 55.0% | |
| TACATGGTGGCTCAGAAGGG+AGG | + | chr4.2:71164997-71165016 | MS.gene043181:CDS | 55.0% | |
| TCTGCGTTGTCTTGAACGCG+AGG | + | chr4.2:71165914-71165933 | MS.gene043181:CDS | 55.0% | |
| ! | CGCAGATGACTTGTCAGCAC+AGG | - | chr4.2:71165900-71165919 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 71163998 | 71166487 | 71163998 | ID=MS.gene043181 |
| chr4.2 | mRNA | 71163998 | 71166487 | 71163998 | ID=MS.gene043181.t1;Parent=MS.gene043181 |
| chr4.2 | exon | 71163998 | 71165133 | 71163998 | ID=MS.gene043181.t1.exon1;Parent=MS.gene043181.t1 |
| chr4.2 | CDS | 71163998 | 71165133 | 71163998 | ID=cds.MS.gene043181.t1;Parent=MS.gene043181.t1 |
| chr4.2 | exon | 71165887 | 71166022 | 71165887 | ID=MS.gene043181.t1.exon2;Parent=MS.gene043181.t1 |
| chr4.2 | CDS | 71165887 | 71166022 | 71165887 | ID=cds.MS.gene043181.t1;Parent=MS.gene043181.t1 |
| chr4.2 | exon | 71166179 | 71166487 | 71166179 | ID=MS.gene043181.t1.exon3;Parent=MS.gene043181.t1 |
| chr4.2 | CDS | 71166179 | 71166487 | 71166179 | ID=cds.MS.gene043181.t1;Parent=MS.gene043181.t1 |
| Gene Sequence |
| Protein sequence |
