AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043252

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043252.t1 MTR_7g010020 94.667 225 12 0 1 225 48 272 1.40e-157 437
MS.gene043252.t1 MTR_6g011610 61.966 234 58 7 1 225 58 269 5.57e-85 253
MS.gene043252.t1 MTR_6g011610 61.207 232 59 7 3 225 41 250 1.07e-82 247
MS.gene043252.t1 MTR_8g468210 55.319 235 85 7 1 224 50 275 3.46e-69 213
MS.gene043252.t1 MTR_5g039000 54.630 216 85 4 19 224 64 276 2.29e-66 206
MS.gene043252.t1 MTR_5g038280 60.360 111 42 1 18 128 74 182 2.52e-34 125
MS.gene043252.t1 MTR_3g080100 53.846 130 58 2 20 149 8 135 2.40e-33 119
MS.gene043252.t1 MTR_4g107650 35.231 281 125 8 1 225 57 336 3.18e-33 122
MS.gene043252.t1 MTR_3g080100 53.846 130 58 2 20 149 47 174 4.49e-33 120
MS.gene043252.t1 MTR_6g007647 58.416 101 41 1 28 128 29 128 3.32e-31 115
MS.gene043252.t1 MTR_6g007647 58.416 101 41 1 28 128 63 162 7.55e-31 115
MS.gene043252.t1 MTR_3g086790 58.763 97 40 0 32 128 59 155 7.67e-30 112
MS.gene043252.t1 MTR_7g103340 49.254 134 56 3 20 149 51 176 9.06e-29 108
MS.gene043252.t1 MTR_8g089895 56.701 97 42 0 32 128 53 149 1.55e-28 109
MS.gene043252.t1 MTR_8g469430 58.333 96 40 0 33 128 89 184 3.31e-27 105
MS.gene043252.t1 MTR_1g061660 45.324 139 58 3 21 151 39 167 1.33e-25 100
MS.gene043252.t1 MTR_4g100550 44.800 125 65 1 2 126 89 209 6.74e-24 96.7
MS.gene043252.t1 MTR_3g092150 48.889 90 46 0 36 125 41 130 3.87e-22 91.3
MS.gene043252.t1 MTR_8g026960 51.163 86 35 1 40 118 41 126 3.50e-21 88.6
MS.gene043252.t1 MTR_5g013010 41.406 128 65 2 2 120 97 223 3.92e-20 87.0
MS.gene043252.t1 MTR_7g093430 43.363 113 57 1 14 126 141 246 9.12e-20 85.9
MS.gene043252.t1 MTR_1g054285 46.154 104 49 1 23 126 144 240 1.53e-19 85.1
MS.gene043252.t1 MTR_4g097600 47.170 106 51 2 21 126 116 216 6.20e-19 83.2
MS.gene043252.t1 MTR_8g006705 49.474 95 44 1 32 126 145 235 1.16e-18 82.8
MS.gene043252.t1 MTR_1g017090 47.917 96 43 1 32 127 129 217 1.34e-18 82.4
MS.gene043252.t1 MTR_5g014890 48.315 89 46 0 32 120 122 210 1.36e-18 82.4
MS.gene043252.t1 MTR_2g061030 47.959 98 47 2 32 129 199 292 3.38e-18 82.0
MS.gene043252.t1 MTR_4g126900 47.674 86 45 0 35 120 90 175 3.78e-18 80.1
MS.gene043252.t1 MTR_4g084750 44.944 89 49 0 32 120 64 152 1.30e-16 75.5
MS.gene043252.t1 MTR_5g019680 48.889 90 46 0 33 122 53 142 8.65e-16 73.6
MS.gene043252.t1 MTR_5g019650 54.167 72 33 0 33 104 53 124 8.58e-15 70.9
MS.gene043252.t1 MTR_3g103590 41.489 94 51 1 15 104 123 216 6.38e-14 69.7
MS.gene043252.t1 MTR_5g013010 41.304 92 44 2 2 84 97 187 4.55e-13 66.2
MS.gene043252.t1 MTR_2g038625 43.299 97 51 1 30 126 79 171 9.28e-13 65.5
MS.gene043252.t1 MTR_2g038580 43.299 97 51 1 30 126 79 171 9.28e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043252.t1 AT1G69780 50.000 224 92 7 16 224 69 287 4.45e-59 188
MS.gene043252.t1 AT3G01220 48.636 220 97 9 12 225 65 274 1.26e-53 174
MS.gene043252.t1 AT1G26960 47.418 213 91 7 15 224 54 248 5.65e-52 169
MS.gene043252.t1 AT5G15150 45.679 243 102 7 1 224 69 300 6.33e-52 170
MS.gene043252.t1 AT5G65310 44.375 160 76 2 3 157 19 170 1.20e-32 120
MS.gene043252.t1 AT5G65310 44.375 160 76 2 3 157 37 188 1.25e-32 120
MS.gene043252.t1 AT2G22430 57.732 97 41 0 32 128 61 157 6.56e-31 115
MS.gene043252.t1 AT4G40060 56.701 97 42 0 32 128 58 154 1.75e-30 114
MS.gene043252.t1 AT3G01470 56.701 97 42 0 32 128 67 163 2.88e-30 113
MS.gene043252.t1 AT2G46680 50.549 91 45 0 36 126 35 125 1.99e-24 97.8
MS.gene043252.t1 AT1G27045 40.157 127 76 0 2 128 37 163 3.51e-23 93.6
MS.gene043252.t1 AT5G03790 48.598 107 53 1 33 137 77 183 9.95e-23 92.8
MS.gene043252.t1 AT1G27045 40.323 124 74 0 2 125 37 160 1.38e-22 92.8
MS.gene043252.t1 AT1G27045 44.545 110 61 0 19 128 11 120 1.56e-22 90.9
MS.gene043252.t1 AT1G27045 44.545 110 61 0 19 128 11 120 1.56e-22 90.9
MS.gene043252.t1 AT1G27045 44.545 110 61 0 19 128 3 112 2.12e-22 90.5
MS.gene043252.t1 AT3G61890 48.889 90 46 0 36 125 33 122 2.50e-22 91.7
MS.gene043252.t1 AT2G46680 48.837 86 44 0 36 121 35 120 4.80e-22 91.3
MS.gene043252.t1 AT5G03790 54.430 79 36 0 33 111 77 155 7.24e-21 86.7
MS.gene043252.t1 AT4G17460 44.348 115 60 1 12 126 114 224 2.80e-20 87.0
MS.gene043252.t1 AT2G36610 46.875 96 43 1 25 112 63 158 2.93e-20 85.1
MS.gene043252.t1 AT2G18550 42.623 122 62 2 33 153 61 175 3.53e-20 85.5
MS.gene043252.t1 AT5G53980 46.465 99 53 0 30 128 8 106 7.31e-20 83.2
MS.gene043252.t1 AT5G47370 42.623 122 58 3 12 126 103 219 3.17e-19 84.3
MS.gene043252.t1 AT2G01430 45.098 102 56 0 19 120 125 226 5.61e-19 83.6
MS.gene043252.t1 AT3G60390 45.536 112 52 3 18 126 146 251 9.11e-19 83.6
MS.gene043252.t1 AT4G16780 44.545 110 57 1 17 126 113 218 1.49e-18 82.4
MS.gene043252.t1 AT5G06710 47.917 96 46 1 32 127 189 280 3.59e-18 82.0
MS.gene043252.t1 AT4G37790 44.444 108 51 2 19 126 114 212 7.07e-18 80.5
MS.gene043252.t1 AT2G22800 42.241 116 51 3 12 127 101 200 2.86e-17 78.6
MS.gene043252.t1 AT2G44910 46.316 95 47 1 32 126 162 252 8.91e-17 77.8
MS.gene043252.t1 AT4G36740 42.991 107 56 1 33 134 55 161 1.37e-16 75.9
MS.gene043252.t1 AT4G36740 42.991 107 56 1 33 134 56 162 1.41e-16 75.9
MS.gene043252.t1 AT1G70920 41.346 104 59 1 17 120 25 126 4.17e-16 73.6
MS.gene043252.t1 AT1G70920 41.346 104 59 1 17 120 55 156 4.71e-16 74.3
MS.gene043252.t1 AT5G66700 48.750 80 38 1 19 98 60 136 1.03e-14 70.9
MS.gene043252.t1 AT5G06710 54.717 53 24 0 32 84 189 241 7.86e-12 63.5
MS.gene043252.t1 AT2G01430 48.485 66 34 0 19 84 125 190 8.94e-12 62.8
MS.gene043252.t1 AT1G79840 33.621 116 56 1 32 126 103 218 3.39e-11 62.8
MS.gene043252.t1 AT1G79840 33.621 116 56 1 32 126 132 247 3.62e-11 62.8
MS.gene043252.t1 AT1G79840 39.506 81 49 0 32 112 45 125 3.69e-11 62.8
MS.gene043252.t1 AT1G79840 39.506 81 49 0 32 112 45 125 3.69e-11 62.8
MS.gene043252.t1 AT1G79840 33.621 116 56 1 32 126 103 218 3.92e-11 62.4
MS.gene043252.t1 AT1G79840 33.621 116 56 1 32 126 103 218 4.68e-11 62.4
MS.gene043252.t1 AT5G46880 38.136 118 63 3 20 135 99 208 9.73e-11 61.2
MS.gene043252.t1 AT5G46880 38.136 118 63 3 20 135 99 208 9.73e-11 61.2
MS.gene043252.t1 AT5G46880 38.136 118 63 3 20 135 99 208 9.73e-11 61.2

Find 37 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGAAGAGCTTTGAATT+TGG 0.186029 7.2:+87682774 MS.gene043252:CDS
GGTATGTTGTTAGGGTTTAA+TGG 0.211008 7.2:-87684692 None:intergenic
GTGCAACTTGCTAAGGCTTT+AGG 0.214413 7.2:+87682822 MS.gene043252:CDS
GAAGAAGATCAGGCTGAATT+TGG 0.249178 7.2:+87682737 MS.gene043252:CDS
AGAAGTTGGGGTATGTTGTT+AGG 0.260017 7.2:-87684701 None:intergenic
TGCAACTTGCTAAGGCTTTA+GGG 0.260540 7.2:+87682823 MS.gene043252:CDS
GAGTTGGTAGAAGGCTAATT+AGG 0.285293 7.2:-87684670 None:intergenic
TTGAGAAGAGCTTTGAATTT+GGG 0.313267 7.2:+87682775 MS.gene043252:CDS
TGAAAGAAACTGAGGGTTCT+TGG 0.315616 7.2:+87684555 MS.gene043252:CDS
AGCCAAGACAAATTGCTATA+TGG 0.335864 7.2:+87682850 MS.gene043252:CDS
CGCATCAGAACCTCTGGCCT+TGG 0.346806 7.2:+87684789 MS.gene043252:CDS
GGTTTAATGGAGTTGGTAGA+AGG 0.387825 7.2:-87684679 None:intergenic
AACCCTCAGTTTCTTTCATT+AGG 0.390455 7.2:-87684550 None:intergenic
TGATGTGAATTGAAGAAGTT+GGG 0.408685 7.2:-87684714 None:intergenic
GCTGAATTTGGATCAAGTTC+AGG 0.410690 7.2:+87682749 MS.gene043252:CDS
GTGGAGAGAAGAAGAAGATC+AGG 0.413666 7.2:+87682727 MS.gene043252:CDS
GAAGTTGGGGTATGTTGTTA+GGG 0.425644 7.2:-87684700 None:intergenic
TCTTCTTCTTCTCTCCACTT+TGG 0.431006 7.2:-87682722 None:intergenic
TTGTTAGGGTTTAATGGAGT+TGG 0.463186 7.2:-87684686 None:intergenic
TTGATGTGAATTGAAGAAGT+TGG 0.467181 7.2:-87684715 None:intergenic
AACCATATAGCAATTTGTCT+TGG 0.491054 7.2:-87682852 None:intergenic
TTGATGCGCATCAGAACCTC+TGG 0.503067 7.2:+87684783 MS.gene043252:CDS
AAGAAAAGTGCAACTTGCTA+AGG 0.504058 7.2:+87682815 MS.gene043252:CDS
CAAATTCAAAGCTCTTCTCA+AGG 0.519428 7.2:-87682773 None:intergenic
GAAGAAATTTGAAGCTGTCA+AGG 0.526329 7.2:+87682935 MS.gene043252:CDS
GATGATGACTTATCTGATGA+TGG 0.529959 7.2:+87682696 MS.gene043252:CDS
ACTGAGGGTTCTTGGAGCAA+TGG 0.557955 7.2:+87684563 MS.gene043252:CDS
AACAAGGATTGGTGTGAAGG+TGG 0.572845 7.2:+87684518 MS.gene043252:CDS
AAATTCAAAGCTCTTCTCAA+GGG 0.589863 7.2:-87682772 None:intergenic
AAATGATGCTTCTATGTCCA+AGG 0.596889 7.2:-87684806 None:intergenic
ATGCCTAATGAAAGAAACTG+AGG 0.620720 7.2:+87684547 MS.gene043252:CDS
CAATCAGAAACTACAAGCAG+AGG 0.622643 7.2:+87682983 MS.gene043252:CDS
CATGATCATCATGAAGTGCA+TGG 0.624861 7.2:+87682672 MS.gene043252:CDS
TCTGATGATGGATTCCAAAG+TGG 0.629793 7.2:+87682708 MS.gene043252:CDS
GCTTCTATGTCCAAGGCCAG+AGG 0.632058 7.2:-87684799 None:intergenic
TGCCTAATGAAAGAAACTGA+GGG 0.635799 7.2:+87684548 MS.gene043252:CDS
GATGTGAATTGAAGAAGTTG+GGG 0.704596 7.2:-87684713 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAATAAAATAAATAT+GGG - chr7.2:87683716-87683735 None:intergenic 0.0%
!! TAGTAAATTTATATTGAAAT+TGG + chr7.2:87684122-87684141 MS.gene043252:intron 10.0%
!! CGACAAAATTTATAATAATT+TGG - chr7.2:87684326-87684345 None:intergenic 15.0%
!! TAAATTTATATTGAAATTGG+TGG + chr7.2:87684125-87684144 MS.gene043252:intron 15.0%
!! TTATAAGTATCAAAATGTAT+TGG + chr7.2:87683266-87683285 MS.gene043252:intron 15.0%
!!! AACTTTTTTGATATATTTCA+AGG + chr7.2:87684165-87684184 MS.gene043252:intron 15.0%
!!! ACTTTTTTGATATATTTCAA+GGG + chr7.2:87684166-87684185 MS.gene043252:intron 15.0%
!!! TTTAAAATATATTCAGTGTT+TGG + chr7.2:87684240-87684259 MS.gene043252:intron 15.0%
!! AAAACATTAATATGATGCTA+TGG - chr7.2:87683918-87683937 None:intergenic 20.0%
!! AAACATTAATATGATGCTAT+GGG - chr7.2:87683917-87683936 None:intergenic 20.0%
!! AAGAATGTAACCTAATATAT+CGG + chr7.2:87684367-87684386 MS.gene043252:intron 20.0%
!! AGTTAAAATGTGGATATTAT+TGG - chr7.2:87683831-87683850 None:intergenic 20.0%
!! ATCCTAACTAATAATTGAAT+TGG - chr7.2:87683545-87683564 None:intergenic 20.0%
!! CATAACTAAAAATGGTAAAA+GGG + chr7.2:87683310-87683329 MS.gene043252:intron 20.0%
!! TAAAATAAATATGGGTACAA+AGG - chr7.2:87683708-87683727 None:intergenic 20.0%
!! TTAAACAACAACTTGTATTT+GGG + chr7.2:87683498-87683517 MS.gene043252:intron 20.0%
!! TTCAATGTAACTACATATAT+TGG - chr7.2:87684290-87684309 None:intergenic 20.0%
!! TTTAAACAACAACTTGTATT+TGG + chr7.2:87683497-87683516 MS.gene043252:intron 20.0%
!!! ACTTTTATGTTTTAACCTAA+TGG + chr7.2:87684467-87684486 MS.gene043252:intron 20.0%
!!! ATTAAAAAAGAGAGAGTATA+AGG - chr7.2:87683026-87683045 None:intergenic 20.0%
!!! CTTTTACCATTTTTAGTTAT+GGG - chr7.2:87683311-87683330 None:intergenic 20.0%
!!! TTTTACCATTTTTAGTTATG+GGG - chr7.2:87683310-87683329 None:intergenic 20.0%
! AAAATATATTCAGTGTTTGG+CGG + chr7.2:87684243-87684262 MS.gene043252:intron 25.0%
! AAGCATTAAAAAACAAGGAT+TGG + chr7.2:87684507-87684526 MS.gene043252:CDS 25.0%
! ATAATCCCCATAACTAAAAA+TGG + chr7.2:87683302-87683321 MS.gene043252:intron 25.0%
! ATGCAAAAACATATCACAAA+TGG - chr7.2:87683572-87683591 None:intergenic 25.0%
! ATGTGTTAAAGCATATTAGT+TGG - chr7.2:87684008-87684027 None:intergenic 25.0%
! CCATAACTAAAAATGGTAAA+AGG + chr7.2:87683309-87683328 MS.gene043252:intron 25.0%
! CTCCAATTCAATTATTAGTT+AGG + chr7.2:87683540-87683559 MS.gene043252:intron 25.0%
! GTTACAAGCATTAAAAAACA+AGG + chr7.2:87684502-87684521 MS.gene043252:intron 25.0%
!! CGAATGTAAATATGATTTTC+AGG + chr7.2:87684208-87684227 MS.gene043252:intron 25.0%
!!! CCTTTTACCATTTTTAGTTA+TGG - chr7.2:87683312-87683331 None:intergenic 25.0%
!!! TTTTAGGAGCAATTCATAAA+GGG + chr7.2:87683408-87683427 MS.gene043252:intron 25.0%
AAATATATTCAGTGTTTGGC+GGG + chr7.2:87684244-87684263 MS.gene043252:intron 30.0%
AAATTCAAAGCTCTTCTCAA+GGG - chr7.2:87682775-87682794 None:intergenic 30.0%
AACCATATAGCAATTTGTCT+TGG - chr7.2:87682855-87682874 None:intergenic 30.0%
AACTGCAATGTAAAACCATT+AGG - chr7.2:87684485-87684504 None:intergenic 30.0%
AAGCAGAGAAAGTTAAAATG+TGG - chr7.2:87683841-87683860 None:intergenic 30.0%
ACTACTACTTTGATACACAA+AGG - chr7.2:87683384-87683403 None:intergenic 30.0%
TGAATCAAGATCAAGATTCA+TGG - chr7.2:87683465-87683484 None:intergenic 30.0%
TGATGTGAATTGAAGAAGTT+GGG - chr7.2:87684717-87684736 None:intergenic 30.0%
TTCTCTGCTTGATTAATTGT+TGG + chr7.2:87683851-87683870 MS.gene043252:intron 30.0%
TTGATGTGAATTGAAGAAGT+TGG - chr7.2:87684718-87684737 None:intergenic 30.0%
TTTAGGAGCAATTCATAAAG+GGG + chr7.2:87683409-87683428 MS.gene043252:intron 30.0%
! AAGTTTTCATCTTGAAGATC+TGG - chr7.2:87684743-87684762 None:intergenic 30.0%
! ATGCACAAATTTTCTTCGAT+AGG - chr7.2:87683104-87683123 None:intergenic 30.0%
! ATTGAATATGAGAGCATGAT+AGG + chr7.2:87683226-87683245 MS.gene043252:intron 30.0%
! CAAAGTAGTAGTGAAGTTTT+AGG + chr7.2:87683392-87683411 MS.gene043252:intron 30.0%
! GGTCACTTTATAAAGTCAAT+AGG - chr7.2:87683810-87683829 None:intergenic 30.0%
!! TTGAGAAGAGCTTTGAATTT+GGG + chr7.2:87682775-87682794 MS.gene043252:CDS 30.0%
!!! GTTTTAGGAGCAATTCATAA+AGG + chr7.2:87683407-87683426 MS.gene043252:intron 30.0%
AACCCTCAGTTTCTTTCATT+AGG - chr7.2:87684553-87684572 None:intergenic 35.0%
ACACATGCATAAAACCATGT+TGG + chr7.2:87684022-87684041 MS.gene043252:intron 35.0%
ACCTAATATATCGGTGTGTT+AGG + chr7.2:87684376-87684395 MS.gene043252:intron 35.0%
AGCCAAGACAAATTGCTATA+TGG + chr7.2:87682850-87682869 MS.gene043252:CDS 35.0%
ATGCCTAATGAAAGAAACTG+AGG + chr7.2:87684547-87684566 MS.gene043252:CDS 35.0%
ATGTCTTGTGCTTAGAAACA+TGG - chr7.2:87683972-87683991 None:intergenic 35.0%
CAAATTCAAAGCTCTTCTCA+AGG - chr7.2:87682776-87682795 None:intergenic 35.0%
GATGATGACTTATCTGATGA+TGG + chr7.2:87682696-87682715 MS.gene043252:CDS 35.0%
GATGTGAATTGAAGAAGTTG+GGG - chr7.2:87684716-87684735 None:intergenic 35.0%
GGAGCTATACTATTTCATGA+TGG - chr7.2:87683524-87683543 None:intergenic 35.0%
GGTATGTTGTTAGGGTTTAA+TGG - chr7.2:87684695-87684714 None:intergenic 35.0%
TGCCTAATGAAAGAAACTGA+GGG + chr7.2:87684548-87684567 MS.gene043252:CDS 35.0%
TTGTTAGGGTTTAATGGAGT+TGG - chr7.2:87684689-87684708 None:intergenic 35.0%
! AAAAACAAGGATTGGTGTGA+AGG + chr7.2:87684515-87684534 MS.gene043252:CDS 35.0%
! ATGATGACTGAAAGCATGTT+CGG - chr7.2:87684404-87684423 None:intergenic 35.0%
! CAAGTTGCACTTTTCTTTCT+GGG - chr7.2:87682812-87682831 None:intergenic 35.0%
! GAAGAAATTTGAAGCTGTCA+AGG + chr7.2:87682935-87682954 MS.gene043252:CDS 35.0%
! TACATATATTGGTCTCGTGT+CGG - chr7.2:87684279-87684298 None:intergenic 35.0%
!! AAGAAAAGTGCAACTTGCTA+AGG + chr7.2:87682815-87682834 MS.gene043252:CDS 35.0%
!! ATACTGACTCTTCACAAGAA+TGG - chr7.2:87683877-87683896 None:intergenic 35.0%
!! CTTGAGAAGAGCTTTGAATT+TGG + chr7.2:87682774-87682793 MS.gene043252:CDS 35.0%
!! TTTTCTTCGATAGGCTAGTT+TGG - chr7.2:87683095-87683114 None:intergenic 35.0%
AGAAGTTGGGGTATGTTGTT+AGG - chr7.2:87684704-87684723 None:intergenic 40.0%
CAATCAGAAACTACAAGCAG+AGG + chr7.2:87682983-87683002 MS.gene043252:CDS 40.0%
CATGATCATCATGAAGTGCA+TGG + chr7.2:87682672-87682691 MS.gene043252:CDS 40.0%
GAAACTACAAGCAGAGGTAA+AGG + chr7.2:87682989-87683008 MS.gene043252:intron 40.0%
GAAGAAGATCAGGCTGAATT+TGG + chr7.2:87682737-87682756 MS.gene043252:CDS 40.0%
GAAGTTGGGGTATGTTGTTA+GGG - chr7.2:87684703-87684722 None:intergenic 40.0%
GCAATTCATAAAGGGGAACA+TGG + chr7.2:87683416-87683435 MS.gene043252:intron 40.0%
GCCTAACACACCGATATATT+AGG - chr7.2:87684380-87684399 None:intergenic 40.0%
GCTGAATTTGGATCAAGTTC+AGG + chr7.2:87682749-87682768 MS.gene043252:CDS 40.0%
TCTTCTTCTTCTCTCCACTT+TGG - chr7.2:87682725-87682744 None:intergenic 40.0%
TGAAAGAAACTGAGGGTTCT+TGG + chr7.2:87684555-87684574 MS.gene043252:CDS 40.0%
! GCAAGTTGCACTTTTCTTTC+TGG - chr7.2:87682813-87682832 None:intergenic 40.0%
!! GAGTTGGTAGAAGGCTAATT+AGG - chr7.2:87684673-87684692 None:intergenic 40.0%
!! GGTTTAATGGAGTTGGTAGA+AGG - chr7.2:87684682-87684701 None:intergenic 40.0%
!! TCTGATGATGGATTCCAAAG+TGG + chr7.2:87682708-87682727 MS.gene043252:CDS 40.0%
!! TCTTCTTGTCGATTCCAACA+TGG - chr7.2:87684039-87684058 None:intergenic 40.0%
!! TGCAACTTGCTAAGGCTTTA+GGG + chr7.2:87682823-87682842 MS.gene043252:CDS 40.0%
!!! TCTTTTAAGTACCGATGCAC+AGG - chr7.2:87684351-87684370 None:intergenic 40.0%
GTGGAGAGAAGAAGAAGATC+AGG + chr7.2:87682727-87682746 MS.gene043252:CDS 45.0%
! AACAAGGATTGGTGTGAAGG+TGG + chr7.2:87684518-87684537 MS.gene043252:CDS 45.0%
! ATTTTGTCGTGCCTGTGCAT+CGG + chr7.2:87684337-87684356 MS.gene043252:intron 45.0%
! GGGAGTAGTGTGCTATTGAT+CGG + chr7.2:87683330-87683349 MS.gene043252:intron 45.0%
!! GTGCAACTTGCTAAGGCTTT+AGG + chr7.2:87682822-87682841 MS.gene043252:CDS 45.0%
!! GTAATAAAATAAAATAAATA+TGG - chr7.2:87683717-87683736 None:intergenic 5.0%
!!! TTATTTTATTTTATTACAAT+TGG + chr7.2:87683720-87683739 MS.gene043252:intron 5.0%
ACTGAGGGTTCTTGGAGCAA+TGG + chr7.2:87684563-87684582 MS.gene043252:CDS 50.0%
CATAAAGGGGAACATGGTCG+AGG + chr7.2:87683422-87683441 MS.gene043252:intron 50.0%
TTGATGCGCATCAGAACCTC+TGG + chr7.2:87684783-87684802 MS.gene043252:CDS 50.0%
CGCATCAGAACCTCTGGCCT+TGG + chr7.2:87684789-87684808 MS.gene043252:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 87682642 87684817 87682642 ID=MS.gene043252
chr7.2 mRNA 87682642 87684817 87682642 ID=MS.gene043252.t1;Parent=MS.gene043252
chr7.2 exon 87682642 87683004 87682642 ID=MS.gene043252.t1.exon1;Parent=MS.gene043252.t1
chr7.2 CDS 87682642 87683004 87682642 ID=cds.MS.gene043252.t1;Parent=MS.gene043252.t1
chr7.2 exon 87684503 87684817 87684503 ID=MS.gene043252.t1.exon2;Parent=MS.gene043252.t1
chr7.2 CDS 87684503 87684817 87684503 ID=cds.MS.gene043252.t1;Parent=MS.gene043252.t1
Gene Sequence

>MS.gene043252

ATGTCATTTTCGGGCATTGAGAACAAATGTCATGATCATCATGAAGTGCATGGAGATGATGACTTATCTGATGATGGATTCCAAAGTGGAGAGAAGAAGAAGATCAGGCTGAATTTGGATCAAGTTCAGGCCCTTGAGAAGAGCTTTGAATTTGGGAACAAGCTTGACCCAGAAAGAAAAGTGCAACTTGCTAAGGCTTTAGGGTTGCAGCCAAGACAAATTGCTATATGGTTTCAGAATAGAAGAGCAAGATGCAAAACAAAGCAACTTGAGAATGAATATGAAGTGCTCAAGAAGAAATTTGAAGCTGTCAAGGATGAAAATGATGCACTTAAAGTTCACAATCAGAAACTACAAGCAGAGGTAAAGGAATATTAGTTACCTTATACTCTCTCTTTTTTAATTTATTGAATGTGCTTTTACAGAAAAATTGTTTTTTTTTTTATAAAGCCAAACTAGCCTATCGAAGAAAATTTGTGCATTTATCTGTTTGATATTTTCAAAGTTCAACATGTCATTAACTATTATTGATTTTCTTTATTTTTTTTACTGCTGATAGAGATATAAGTGAAATATAATGAGACATTGAATATGAGAGCATGATAGGATAAATACAAATATTTTTTATAAGTATCAAAATGTATTGGTTTTCTTGTGTAAATAATCCCCATAACTAAAAATGGTAAAAGGGAGTAGTGTGCTATTGATCGGATCATCTTGAATTTTGCATACTCTTGTTCCTTTGTGTATCAAAGTAGTAGTGAAGTTTTAGGAGCAATTCATAAAGGGGAACATGGTCGAGGAGTGATTAAACTAGTATCCATGAATCTTGATCTTGATTCAGATATTAAATATTTTAAACAACAACTTGTATTTGGGCCATCATGAAATAGTATAGCTCCAATTCAATTATTAGTTAGGATTATTCCATTTGTGATATGTTTTTGCATGTTGTATCTGTTTCTTTATCTTTTCTTACTCTTGACTGCTAGCTAGTACTCAATTTCTTACATTTTGTGAATACAATGTTTTCTTACTACTCAATACTCATTGTGTTTTCTCTCCTTTGTACCCATATTTATTTTATTTTATTACAATTGGAAAATCTTTCATTGTTTGAGTTTTGTGCTTTTTTTTATATTTAATGCACTATGATTCTATATGACCTATTGACTTTATAAAGTGACCAATAATATCCACATTTTAACTTTCTCTGCTTGATTAATTGTTGGCCATTCTTGTGAAGAGTCAGTATCATTGTCACACTCAGATCCCATAGCATCATATTAATGTTTTTCTTTTTGTATTCAATATATATGTTTTAGTTCCATGTTTCTAAGCACAAGACATAGTTGCATCAGATCCAACTAATATGCTTTAACACATGCATAAAACCATGTTGGAATCGACAAGAAGAGACTGATAATATTTAAGTGTTTTTCTATCATGTGCAAATTTTCAGAAGTTAAAAAGTTTAAAATAGTAAATTTATATTGAAATTGGTGGATTTTATATAAATATATAACTTTTTTGATATATTTCAAGGGTTTAAAAAATGACAAGAATCGAATGTAAATATGATTTTCAGGCACTTCATATTTAAAATATATTCAGTGTTTGGCGGGTGCTTGATACCGACACGAGACCAATATATGTAGTTACATTGAACAGTTGCGTTTATCCAAATTATTATAAATTTTGTCGTGCCTGTGCATCGGTACTTAAAAGAATGTAACCTAATATATCGGTGTGTTAGGCTCCGAACATGCTTTCAGTCATCATATAGTTTAAACATTAATGTAATTACATACATATATTTTGTTACACTTTTATGTTTTAACCTAATGGTTTTACATTGCAGTTACAAGCATTAAAAAACAAGGATTGGTGTGAAGGTGGAACAAAATGCCTAATGAAAGAAACTGAGGGTTCTTGGAGCAATGGAAGTGTTAATAGCTTAAACATTAATTTAGATCTCTCAAGAACACAAGCTTTGAACAGTTCAGTTTCTTCACAGAATGATAGAAACCTAATTAGCCTTCTACCAACTCCATTAAACCCTAACAACATACCCCAACTTCTTCAATTCACATCAAGACCAGATCTTCAAGATGAAAACTTTAGCAACATGTTTCACAACATTGATGCGCATCAGAACCTCTGGCCTTGGACATAG
Protein sequence

>MS.gene043252.t1

MSFSGIENKCHDHHEVHGDDDLSDDGFQSGEKKKIRLNLDQVQALEKSFEFGNKLDPERKVQLAKALGLQPRQIAIWFQNRRARCKTKQLENEYEVLKKKFEAVKDENDALKVHNQKLQAELQALKNKDWCEGGTKCLMKETEGSWSNGSVNSLNINLDLSRTQALNSSVSSQNDRNLISLLPTPLNPNNIPQLLQFTSRPDLQDENFSNMFHNIDAHQNLWPWT