AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043411

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043411.t1 MTR_2g090605 97.115 416 7 2 1 412 1 415 0.0 834
MS.gene043411.t1 MTR_4g078660 64.433 194 37 4 31 222 29 192 4.28e-81 252
MS.gene043411.t1 MTR_6g090380 67.883 137 32 2 56 180 70 206 4.80e-66 215
MS.gene043411.t1 MTR_8g102100 38.333 360 168 11 63 411 59 375 2.48e-63 208
MS.gene043411.t1 MTR_7g092070 68.966 116 36 0 73 188 260 375 2.37e-57 200
MS.gene043411.t1 MTR_3g029590 45.455 231 96 6 73 292 260 471 6.81e-56 196
MS.gene043411.t1 MTR_3g103960 55.769 156 64 3 30 180 2 157 1.54e-54 182
MS.gene043411.t1 MTR_1g050438 64.348 115 41 0 73 187 224 338 8.89e-52 183
MS.gene043411.t1 MTR_0728s0020 64.348 115 41 0 73 187 240 354 1.94e-51 182
MS.gene043411.t1 MTR_5g071070 61.207 116 45 0 73 188 144 259 3.59e-51 182
MS.gene043411.t1 MTR_5g082830 65.217 115 38 1 73 187 213 325 1.17e-50 181
MS.gene043411.t1 MTR_5g071070 61.207 116 45 0 73 188 226 341 1.38e-50 181
MS.gene043411.t1 MTR_1g075890 61.207 116 45 0 73 188 225 340 3.19e-49 177
MS.gene043411.t1 MTR_3g435680 61.207 116 45 0 73 188 147 262 1.60e-48 170
MS.gene043411.t1 MTR_3g070880 56.034 116 51 0 73 188 159 274 7.78e-45 162
MS.gene043411.t1 MTR_3g435590 59.813 107 43 0 73 179 234 340 1.28e-43 158
MS.gene043411.t1 MTR_3g464270 50.877 114 55 1 76 188 8 121 1.11e-36 137
MS.gene043411.t1 MTR_3g464260 62.162 74 28 0 108 181 212 285 2.24e-29 120
MS.gene043411.t1 MTR_3g464290 55.814 86 37 1 73 157 96 181 3.10e-29 119
MS.gene043411.t1 MTR_3g464280 40.179 112 33 1 70 181 181 258 3.42e-21 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043411.t1 AT1G03790 46.154 364 136 12 66 411 71 392 1.87e-85 266
MS.gene043411.t1 AT5G44260 42.714 398 179 12 30 411 16 380 8.40e-78 246
MS.gene043411.t1 AT2G19810 67.347 147 38 1 56 192 47 193 9.08e-71 227
MS.gene043411.t1 AT4G29190 53.723 188 68 2 24 192 7 194 2.60e-68 220
MS.gene043411.t1 AT2G25900 74.561 114 29 0 71 184 84 197 3.14e-65 211
MS.gene043411.t1 AT2G25900 74.561 114 29 0 71 184 84 197 3.14e-65 211
MS.gene043411.t1 AT2G41900 45.133 226 94 4 73 291 257 459 3.53e-56 197
MS.gene043411.t1 AT5G58620 66.957 115 37 1 73 186 205 319 2.85e-54 190
MS.gene043411.t1 AT5G07500 68.182 110 35 0 70 179 45 154 1.73e-52 176
MS.gene043411.t1 AT5G12850 65.217 115 39 1 73 186 253 367 4.87e-52 185
MS.gene043411.t1 AT3G55980 38.824 255 102 5 28 271 156 367 4.40e-49 175
MS.gene043411.t1 AT2G40140 39.831 236 92 5 73 294 210 409 1.02e-48 174
MS.gene043411.t1 AT2G40140 39.831 236 92 5 73 294 210 409 1.02e-48 174
MS.gene043411.t1 AT3G55980 38.824 255 102 5 28 271 223 434 1.13e-48 175

Find 81 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGGGTGAGGAGCTTTCT+TGG 0.183749 2.2:+9358385 None:intergenic
AGACATGCTTATTGATCTTT+TGG 0.193333 2.2:-9357645 MS.gene043411:CDS
GAGGGATGTCGATGTCTCTA+AGG 0.318194 2.2:+9358407 None:intergenic
TTTGAAGATGATGATGTAAC+AGG 0.341921 2.2:+9357941 None:intergenic
GTTGGTGGTGGTGACGTTAA+TGG 0.352963 2.2:-9357320 MS.gene043411:CDS
AAACAGCGACAATATTAATA+AGG 0.368587 2.2:-9357345 MS.gene043411:CDS
CGGTGGTGTTGCGGCGGGTG+AGG 0.397490 2.2:+9358374 None:intergenic
TCATTCACCCATCCGAGATC+AGG 0.400183 2.2:+9357281 None:intergenic
GACAATATTAATAAGGTTGT+TGG 0.414119 2.2:-9357338 MS.gene043411:CDS
TTTGGGAGAGAGAGGTTGGT+AGG 0.420760 2.2:+9358435 None:intergenic
CTCGTAGCCGGAGCCATGAC+TGG 0.421786 2.2:-9358219 MS.gene043411:CDS
CGCCGCGGTGGCTGTAACCG+TGG 0.429136 2.2:-9358106 MS.gene043411:CDS
CAGCCACCGCGGCGATACTC+AGG 0.436266 2.2:+9358115 None:intergenic
TCTTGTCCTGCCCCTGATCT+CGG 0.442440 2.2:-9357293 MS.gene043411:CDS
GAAGATGTCGACGGCGGCGG+TGG 0.446476 2.2:+9358357 None:intergenic
AAGAATGAAACTTGTGTTGT+TGG 0.454570 2.2:+9358458 None:intergenic
TGTTGCTGATTCTGTTCCTC+AGG 0.458860 2.2:+9357509 None:intergenic
GGACTTTGAATTCATACATT+CGG 0.463131 2.2:+9358251 None:intergenic
CGGCGGCGGTGGTGTTGCGG+CGG 0.463780 2.2:+9358368 None:intergenic
GGCGGCGGTGGTGTTGCGGC+GGG 0.472525 2.2:+9358369 None:intergenic
GTCCTGCCCCTGATCTCGGA+TGG 0.476419 2.2:-9357289 MS.gene043411:CDS
GGAGAAGATGTCGACGGCGG+CGG 0.481474 2.2:+9358354 None:intergenic
CGGGTGAGGAGCTTTCTTGG+AGG 0.487835 2.2:+9358388 None:intergenic
AGTGCTTTAGCAGTAGAAAC+TGG 0.488127 2.2:+9357572 None:intergenic
CGGAAATGATCTGATGAGTA+AGG 0.490767 2.2:+9358271 None:intergenic
GGGTGAGGAGCTTTCTTGGA+GGG 0.496924 2.2:+9358389 None:intergenic
TCCTGCCCCTGATCTCGGAT+GGG 0.499250 2.2:-9357288 MS.gene043411:CDS
ATTAATAAGGTTGTTGGTGG+TGG 0.500154 2.2:-9357332 MS.gene043411:CDS
AGAACTGAAGCATGCAAAGA+TGG 0.503562 2.2:-9358025 MS.gene043411:CDS
TCCGCCGGTGCACTCGTAGC+CGG 0.504444 2.2:-9358231 MS.gene043411:CDS
ACACCGTTACGTGGCTTCAT+CGG 0.504782 2.2:+9357722 None:intergenic
GAACCATAGCGTGAGAGCGA+TGG 0.517489 2.2:+9357698 None:intergenic
CGACGGCGGCGGTGGTGTTG+CGG 0.519055 2.2:+9358365 None:intergenic
TTGTCAACATCATTGAAACT+TGG 0.521327 2.2:+9357404 None:intergenic
CGTGGCTTCATCGGAGACAT+AGG 0.522416 2.2:+9357731 None:intergenic
CACTGTGGCGCTAATGGTAA+TGG 0.526244 2.2:-9357833 MS.gene043411:CDS
CCACGGCGGTTTCATTACTC+AGG 0.527158 2.2:-9358148 MS.gene043411:CDS
CATTCACCCATCCGAGATCA+GGG 0.528306 2.2:+9357282 None:intergenic
GTTCCATCGCTCTCACGCTA+TGG 0.533114 2.2:-9357701 MS.gene043411:CDS
AATATTAATAAGGTTGTTGG+TGG 0.545047 2.2:-9357335 MS.gene043411:CDS
GCTTCAGTTCTGTATCTAGC+AGG 0.547143 2.2:+9358037 None:intergenic
GAAGGGATGAATTTCAATGA+CGG 0.555565 2.2:-9357614 MS.gene043411:CDS
AATGGTAATGGTAATGGTAA+TGG 0.555973 2.2:-9357821 MS.gene043411:CDS
AATGAAACCGCCGTGGATCA+CGG 0.566037 2.2:+9358155 None:intergenic
AAGCTCGCCGCCGTGATCCA+CGG 0.567851 2.2:-9358165 MS.gene043411:CDS
AGTCAGTCCAGTCATGGCTC+CGG 0.569804 2.2:+9358212 None:intergenic
TGATGATCAAAAGAAGAAGA+AGG 0.576971 2.2:+9357473 None:intergenic
GGAGACATAGGTGGTGATGC+CGG 0.581592 2.2:+9357743 None:intergenic
GATACTTGTGAATTTGCTCA+TGG 0.582670 2.2:-9358082 MS.gene043411:CDS
ATGGACAGTCAGTCCAGTCA+TGG 0.586583 2.2:+9358206 None:intergenic
TGAATCTCTTGATGTTCCTG+AGG 0.587490 2.2:-9357525 MS.gene043411:CDS
AGCCACCGCGGCGATACTCA+GGG 0.587575 2.2:+9358116 None:intergenic
ACCCATCCGAGATCAGGGGC+AGG 0.589319 2.2:+9357287 None:intergenic
GGCGCTAATGGTAATGGTAA+TGG 0.597170 2.2:-9357827 MS.gene043411:CDS
GACTGTCCATTCGCTCACCC+CGG 0.597229 2.2:-9358193 MS.gene043411:CDS
AGCACTTCAGATACAAAACA+TGG 0.598969 2.2:-9357555 MS.gene043411:CDS
TCTCCGATGAAGCCACGTAA+CGG 0.601715 2.2:-9357725 MS.gene043411:CDS
AGGGATGTCGATGTCTCTAA+GGG 0.602570 2.2:+9358408 None:intergenic
TCCGGCTACGAGTGCACCGG+CGG 0.607263 2.2:+9358230 None:intergenic
TCTGAGTCAGAGTCATTGTG+TGG 0.612139 2.2:+9358304 None:intergenic
AAGATGATGATGTAACAGGA+AGG 0.616658 2.2:+9357945 None:intergenic
AGTCAGAGTCATTGTGTGGG+AGG 0.622332 2.2:+9358308 None:intergenic
GGCTCCGGCTACGAGTGCAC+CGG 0.627207 2.2:+9358227 None:intergenic
TGCCCTGAGTATCGCCGCGG+TGG 0.630381 2.2:-9358118 MS.gene043411:CDS
CACGGCGGTTTCATTACTCA+GGG 0.632004 2.2:-9358147 MS.gene043411:CDS
CTGAGTCAGAGTCATTGTGT+GGG 0.635621 2.2:+9358305 None:intergenic
CAAATTCACAAGTATCGCCA+CGG 0.650826 2.2:+9358089 None:intergenic
AGCGATGGAACACCGTTACG+TGG 0.658393 2.2:+9357713 None:intergenic
GACATAGGTGGTGATGCCGG+AGG 0.666150 2.2:+9357746 None:intergenic
GTCGTCGGAGAAGATGTCGA+CGG 0.666964 2.2:+9358348 None:intergenic
GGAAGGATTCTTAATTGACG+AGG 0.669701 2.2:+9357962 None:intergenic
TGTATGAATTCAAAGTCCGC+CGG 0.674896 2.2:-9358246 MS.gene043411:CDS
GTCGGAGAAGATGTCGACGG+CGG 0.678761 2.2:+9358351 None:intergenic
ATTCACCCATCCGAGATCAG+GGG 0.681023 2.2:+9357283 None:intergenic
GGCTTCATCGGAGACATAGG+TGG 0.681714 2.2:+9357734 None:intergenic
CCTGAGTAATGAAACCGCCG+TGG 0.683137 2.2:+9358148 None:intergenic
CTCGCCGCCGTGATCCACGG+CGG 0.698305 2.2:-9358162 MS.gene043411:CDS
GCACTTCAGATACAAAACAT+GGG 0.708790 2.2:-9357554 MS.gene043411:CDS
CGCCACGGTTACAGCCACCG+CGG 0.740750 2.2:+9358104 None:intergenic
GAAACCGCCGTGGATCACGG+CGG 0.763141 2.2:+9358158 None:intergenic
GTTTGCCCTGAGTATCGCCG+CGG 0.768550 2.2:-9358121 MS.gene043411:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAATATGAACATGTTTTT+GGG - chr2.2:9358384-9358403 MS.gene043411:CDS 20.0%
! AAACAGCGACAATATTAATA+AGG - chr2.2:9358407-9358426 MS.gene043411:CDS 25.0%
! AATATTAATAAGGTTGTTGG+TGG - chr2.2:9358417-9358436 MS.gene043411:CDS 25.0%
! GACAATATTAATAAGGTTGT+TGG - chr2.2:9358414-9358433 MS.gene043411:CDS 25.0%
!! CAACAATATGAACATGTTTT+TGG - chr2.2:9358383-9358402 MS.gene043411:CDS 25.0%
AAGAATGAAACTTGTGTTGT+TGG + chr2.2:9357297-9357316 None:intergenic 30.0%
GGACTTTGAATTCATACATT+CGG + chr2.2:9357504-9357523 None:intergenic 30.0%
TGATGATCAAAAGAAGAAGA+AGG + chr2.2:9358282-9358301 None:intergenic 30.0%
TTGTCAACATCATTGAAACT+TGG + chr2.2:9358351-9358370 None:intergenic 30.0%
! AGACATGCTTATTGATCTTT+TGG - chr2.2:9358107-9358126 MS.gene043411:CDS 30.0%
! GACATGCTTATTGATCTTTT+GGG - chr2.2:9358108-9358127 MS.gene043411:CDS 30.0%
! TTTGAAGATGATGATGTAAC+AGG + chr2.2:9357814-9357833 None:intergenic 30.0%
!! AATGGTAATGGTAATGGTAA+TGG - chr2.2:9357931-9357950 MS.gene043411:CDS 30.0%
!! ATACCAAAAAGTGTTGAAGT+TGG + chr2.2:9357970-9357989 None:intergenic 30.0%
!!! ATCTTTTGGGTTCTTTTGAA+GGG - chr2.2:9358121-9358140 MS.gene043411:CDS 30.0%
!!! ATGTCTCTAAGGGATTTTTT+GGG + chr2.2:9357337-9357356 None:intergenic 30.0%
!!! TGTTTGATTTTGAAGCAACA+TGG + chr2.2:9357882-9357901 None:intergenic 30.0%
AGCACTTCAGATACAAAACA+TGG - chr2.2:9358197-9358216 MS.gene043411:CDS 35.0%
GAAGGGATGAATTTCAATGA+CGG - chr2.2:9358138-9358157 MS.gene043411:CDS 35.0%
GCACTTCAGATACAAAACAT+GGG - chr2.2:9358198-9358217 MS.gene043411:CDS 35.0%
! AAGATGATGATGTAACAGGA+AGG + chr2.2:9357810-9357829 None:intergenic 35.0%
! ATTAATAAGGTTGTTGGTGG+TGG - chr2.2:9358420-9358439 MS.gene043411:CDS 35.0%
! GATACTTGTGAATTTGCTCA+TGG - chr2.2:9357670-9357689 MS.gene043411:CDS 35.0%
! TCTCCAACTTCAACACTTTT+TGG - chr2.2:9357964-9357983 MS.gene043411:CDS 35.0%
!!! GATCTTTTGGGTTCTTTTGA+AGG - chr2.2:9358120-9358139 MS.gene043411:CDS 35.0%
!!! GATGTCTCTAAGGGATTTTT+TGG + chr2.2:9357338-9357357 None:intergenic 35.0%
!!! TGTTGTTTGTTTTGTCACTG+TGG - chr2.2:9357904-9357923 MS.gene043411:CDS 35.0%
AGAACTGAAGCATGCAAAGA+TGG - chr2.2:9357727-9357746 MS.gene043411:CDS 40.0%
AGTGCTTTAGCAGTAGAAAC+TGG + chr2.2:9358183-9358202 None:intergenic 40.0%
CGGAAATGATCTGATGAGTA+AGG + chr2.2:9357484-9357503 None:intergenic 40.0%
GGAAGGATTCTTAATTGACG+AGG + chr2.2:9357793-9357812 None:intergenic 40.0%
TGAATCTCTTGATGTTCCTG+AGG - chr2.2:9358227-9358246 MS.gene043411:CDS 40.0%
TGTATGAATTCAAAGTCCGC+CGG - chr2.2:9357506-9357525 MS.gene043411:CDS 40.0%
! CAAATTCACAAGTATCGCCA+CGG + chr2.2:9357666-9357685 None:intergenic 40.0%
!! CTCATGGTGTTTTTGAATGC+TGG - chr2.2:9357686-9357705 MS.gene043411:CDS 40.0%
!!! ATTTTTTGGGAGAGAGAGGT+TGG + chr2.2:9357324-9357343 None:intergenic 40.0%
AGGGATGTCGATGTCTCTAA+GGG + chr2.2:9357347-9357366 None:intergenic 45.0%
CTGAGTCAGAGTCATTGTGT+GGG + chr2.2:9357450-9357469 None:intergenic 45.0%
GCTTCAGTTCTGTATCTAGC+AGG + chr2.2:9357718-9357737 None:intergenic 45.0%
TCTGAGTCAGAGTCATTGTG+TGG + chr2.2:9357451-9357470 None:intergenic 45.0%
! TGTGTGGGAGGAACTTTTGA+AGG + chr2.2:9357435-9357454 None:intergenic 45.0%
! TTTTGTCACTGTGGCGCTAA+TGG - chr2.2:9357913-9357932 MS.gene043411:CDS 45.0%
!! GGCGCTAATGGTAATGGTAA+TGG - chr2.2:9357925-9357944 MS.gene043411:CDS 45.0%
!! GTCTCATTTTTCTTCGCCTC+CGG - chr2.2:9357990-9358009 MS.gene043411:CDS 45.0%
!! TGGGAGGAACTTTTGAAGGA+TGG + chr2.2:9357431-9357450 None:intergenic 45.0%
!! TGTTGCTGATTCTGTTCCTC+AGG + chr2.2:9358246-9358265 None:intergenic 45.0%
!!! AGGGATTTTTTGGGAGAGAG+AGG + chr2.2:9357328-9357347 None:intergenic 45.0%
!!! CTTTTGAAGGATGGTGTCGT+CGG + chr2.2:9357422-9357441 None:intergenic 45.0%
AATGAAACCGCCGTGGATCA+CGG + chr2.2:9357600-9357619 None:intergenic 50.0%
ACACCGTTACGTGGCTTCAT+CGG + chr2.2:9358033-9358052 None:intergenic 50.0%
AGTCAGAGTCATTGTGTGGG+AGG + chr2.2:9357447-9357466 None:intergenic 50.0%
ATGGACAGTCAGTCCAGTCA+TGG + chr2.2:9357549-9357568 None:intergenic 50.0%
ATTCACCCATCCGAGATCAG+GGG + chr2.2:9358472-9358491 None:intergenic 50.0%
CACGGCGGTTTCATTACTCA+GGG - chr2.2:9357605-9357624 MS.gene043411:CDS 50.0%
CACTGTGGCGCTAATGGTAA+TGG - chr2.2:9357919-9357938 MS.gene043411:CDS 50.0%
CATTCACCCATCCGAGATCA+GGG + chr2.2:9358473-9358492 None:intergenic 50.0%
GAGGGATGTCGATGTCTCTA+AGG + chr2.2:9357348-9357367 None:intergenic 50.0%
TCATTCACCCATCCGAGATC+AGG + chr2.2:9358474-9358493 None:intergenic 50.0%
TCTCCGATGAAGCCACGTAA+CGG - chr2.2:9358027-9358046 MS.gene043411:CDS 50.0%
! TTTGGGAGAGAGAGGTTGGT+AGG + chr2.2:9357320-9357339 None:intergenic 50.0%
!! GTTGGTGGTGGTGACGTTAA+TGG - chr2.2:9358432-9358451 MS.gene043411:CDS 50.0%
AGCGATGGAACACCGTTACG+TGG + chr2.2:9358042-9358061 None:intergenic 55.0%
AGTCAGTCCAGTCATGGCTC+CGG + chr2.2:9357543-9357562 None:intergenic 55.0%
CCACGGCGGTTTCATTACTC+AGG - chr2.2:9357604-9357623 MS.gene043411:CDS 55.0%
CCTGAGTAATGAAACCGCCG+TGG + chr2.2:9357607-9357626 None:intergenic 55.0%
CGTGGCTTCATCGGAGACAT+AGG + chr2.2:9358024-9358043 None:intergenic 55.0%
GAACCATAGCGTGAGAGCGA+TGG + chr2.2:9358057-9358076 None:intergenic 55.0%
GGCTTCATCGGAGACATAGG+TGG + chr2.2:9358021-9358040 None:intergenic 55.0%
GGGTGAGGAGCTTTCTTGGA+GGG + chr2.2:9357366-9357385 None:intergenic 55.0%
GTCGTCGGAGAAGATGTCGA+CGG + chr2.2:9357407-9357426 None:intergenic 55.0%
GTTCCATCGCTCTCACGCTA+TGG - chr2.2:9358051-9358070 MS.gene043411:CDS 55.0%
TCTTGTCCTGCCCCTGATCT+CGG - chr2.2:9358459-9358478 MS.gene043411:CDS 55.0%
! GGAGACATAGGTGGTGATGC+CGG + chr2.2:9358012-9358031 None:intergenic 55.0%
! TTTTCACCGGGGTGAGCGAA+TGG + chr2.2:9357568-9357587 None:intergenic 55.0%
CGGGTGAGGAGCTTTCTTGG+AGG + chr2.2:9357367-9357386 None:intergenic 60.0%
GACTGTCCATTCGCTCACCC+CGG - chr2.2:9357559-9357578 MS.gene043411:CDS 60.0%
GTCGGAGAAGATGTCGACGG+CGG + chr2.2:9357404-9357423 None:intergenic 60.0%
TCCTGCCCCTGATCTCGGAT+GGG - chr2.2:9358464-9358483 MS.gene043411:CDS 60.0%
! GACATAGGTGGTGATGCCGG+AGG + chr2.2:9358009-9358028 None:intergenic 60.0%
! GTTTGCCCTGAGTATCGCCG+CGG - chr2.2:9357631-9357650 MS.gene043411:CDS 60.0%
!!! ACGGCGGCGAGCTTTTTCAC+CGG + chr2.2:9357581-9357600 None:intergenic 60.0%
AAGCTCGCCGCCGTGATCCA+CGG - chr2.2:9357587-9357606 MS.gene043411:CDS 65.0%
ACCCATCCGAGATCAGGGGC+AGG + chr2.2:9358468-9358487 None:intergenic 65.0%
AGCCACCGCGGCGATACTCA+GGG + chr2.2:9357639-9357658 None:intergenic 65.0%
CGGCGGGTGAGGAGCTTTCT+TGG + chr2.2:9357370-9357389 None:intergenic 65.0%
CTCGTAGCCGGAGCCATGAC+TGG - chr2.2:9357533-9357552 MS.gene043411:CDS 65.0%
GAAACCGCCGTGGATCACGG+CGG + chr2.2:9357597-9357616 None:intergenic 65.0%
GGAGAAGATGTCGACGGCGG+CGG + chr2.2:9357401-9357420 None:intergenic 65.0%
GTCCTGCCCCTGATCTCGGA+TGG - chr2.2:9358463-9358482 MS.gene043411:CDS 65.0%
!!! CGGCGGCGAGCTTTTTCACC+GGG + chr2.2:9357580-9357599 None:intergenic 65.0%
!!! GGCGGCGAGCTTTTTCACCG+GGG + chr2.2:9357579-9357598 None:intergenic 65.0%
CAGCCACCGCGGCGATACTC+AGG + chr2.2:9357640-9357659 None:intergenic 70.0%
CGCCACGGTTACAGCCACCG+CGG + chr2.2:9357651-9357670 None:intergenic 70.0%
GAAGATGTCGACGGCGGCGG+TGG + chr2.2:9357398-9357417 None:intergenic 70.0%
GGCTCCGGCTACGAGTGCAC+CGG + chr2.2:9357528-9357547 None:intergenic 70.0%
TCCGCCGGTGCACTCGTAGC+CGG - chr2.2:9357521-9357540 MS.gene043411:CDS 70.0%
TCCGGCTACGAGTGCACCGG+CGG + chr2.2:9357525-9357544 None:intergenic 70.0%
! TGCCCTGAGTATCGCCGCGG+TGG - chr2.2:9357634-9357653 MS.gene043411:CDS 70.0%
CGCCGCGGTGGCTGTAACCG+TGG - chr2.2:9357646-9357665 MS.gene043411:CDS 75.0%
CTCGCCGCCGTGATCCACGG+CGG - chr2.2:9357590-9357609 MS.gene043411:CDS 75.0%
! CGACGGCGGCGGTGGTGTTG+CGG + chr2.2:9357390-9357409 None:intergenic 75.0%
!! CGGTGGTGTTGCGGCGGGTG+AGG + chr2.2:9357381-9357400 None:intergenic 75.0%
!!! CGGCGGCGGTGGTGTTGCGG+CGG + chr2.2:9357387-9357406 None:intergenic 80.0%
!!! GGCGGCGGTGGTGTTGCGGC+GGG + chr2.2:9357386-9357405 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 9357268 9358506 9357268 ID=MS.gene043411
chr2.2 mRNA 9357268 9358506 9357268 ID=MS.gene043411.t1;Parent=MS.gene043411
chr2.2 exon 9357268 9358506 9357268 ID=MS.gene043411.t1.exon1;Parent=MS.gene043411.t1
chr2.2 CDS 9357268 9358506 9357268 ID=cds.MS.gene043411.t1;Parent=MS.gene043411.t1
Gene Sequence

>MS.gene043411

ATGACTACTATTTGTGCTGAACAACACCAACAACACAAGTTTCATTCTTCCTACCAACCTCTCTCTCCCAAAAAATCCCTTAGAGACATCGACATCCCTCCAAGAAAGCTCCTCACCCGCCGCAACACCACCGCCGCCGTCGACATCTTCTCCGACGACACCATCCTTCAAAAGTTCCTCCCACACAATGACTCTGACTCAGACTCTGATGATCCTTACTCATCAGATCATTTCCGAATGTATGAATTCAAAGTCCGCCGGTGCACTCGTAGCCGGAGCCATGACTGGACTGACTGTCCATTCGCTCACCCCGGTGAAAAAGCTCGCCGCCGTGATCCACGGCGGTTTCATTACTCAGGGACAGTTTGCCCTGAGTATCGCCGCGGTGGCTGTAACCGTGGCGATACTTGTGAATTTGCTCATGGTGTTTTTGAATGCTGGCTTCATCCTGCTAGATACAGAACTGAAGCATGCAAAGATGGTAAAAACTGTAAGAGAAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTTCCTGTTACATCATCATCTTCAAATGAACATTTTTCATGCAACAAGAAAAATAACAAGCTTTTGAATAACCATGTTGCTTCAAAATCAAACAATTGTTGTTTGTTTTGTCACTGTGGCGCTAATGGTAATGGTAATGGTAATGGTGCTAATAATTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTTTCTTCGCCTCCGGCATCACCACCTATGTCTCCGATGAAGCCACGTAACGGTGTTCCATCGCTCTCACGCTATGGTTCTTCGATTAATAGTAACAATCTTCGTTATAGAGACATGCTTATTGATCTTTTGGGTTCTTTTGAAGGGATGAATTTCAATGACGGTTCATCTTCTTCTTCTTCACCAGTTTCTACTGCTAAAGCACTTCAGATACAAAACATGGGTTATCTTGAATCTCTTGATGTTCCTGAGGAACAGAATCAGCAACAGTTTATTGTTTCACCTTCTTCTTCTTTTGATCATCAACAACATTTCAATATTCTTTCACAATCTATTCATCAGAATTTGACACCAAGTTTCAATGATGTTGACAATAACATCATTAACAACAATATGAACATGTTTTTGGGAAACAGCGACAATATTAATAAGGTTGTTGGTGGTGGTGACGTTAATGGTCTGTCTTGTCCTGCCCCTGATCTCGGATGGGTGAATGAATTGCTGATGTAG
Protein sequence

>MS.gene043411.t1

MTTICAEQHQQHKFHSSYQPLSPKKSLRDIDIPPRKLLTRRNTTAAVDIFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCNRGDTCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSNEHFSCNKKNNKLLNNHVASKSNNCCLFCHCGANGNGNGNGANNSPTSTLFGMSHFSSPPASPPMSPMKPRNGVPSLSRYGSSINSNNLRYRDMLIDLLGSFEGMNFNDGSSSSSSPVSTAKALQIQNMGYLESLDVPEEQNQQQFIVSPSSSFDHQQHFNILSQSIHQNLTPSFNDVDNNIINNNMNMFLGNSDNINKVVGGGDVNGLSCPAPDLGWVNELLM