Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043424.t1 | XP_013465109.1 | 82.9 | 217 | 30 | 2 | 1 | 210 | 1 | 217 | 6.10E-89 | 337 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043424.t1 | F4JIJ7 | 40.6 | 180 | 87 | 5 | 12 | 174 | 11 | 187 | 1.1e-25 | 118.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043424.t1 | A0A072VAT4 | 82.9 | 217 | 30 | 2 | 1 | 210 | 1 | 217 | 4.4e-89 | 337.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene043424.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043424.t1 | MTR_2g090440 | 86.175 | 217 | 23 | 3 | 1 | 210 | 1 | 217 | 6.54e-130 | 364 |
MS.gene043424.t1 | MTR_2g090480 | 81.735 | 219 | 31 | 2 | 1 | 210 | 1 | 219 | 6.56e-126 | 354 |
MS.gene043424.t1 | MTR_2g090425 | 82.178 | 202 | 26 | 2 | 1 | 192 | 1 | 202 | 1.94e-113 | 327 |
MS.gene043424.t1 | MTR_2g090500 | 87.719 | 171 | 15 | 2 | 46 | 210 | 60 | 230 | 3.43e-102 | 295 |
MS.gene043424.t1 | MTR_4g078350 | 66.495 | 194 | 57 | 4 | 9 | 194 | 8 | 201 | 2.86e-84 | 248 |
MS.gene043424.t1 | MTR_2g013920 | 45.714 | 175 | 82 | 4 | 7 | 173 | 2 | 171 | 2.82e-45 | 148 |
MS.gene043424.t1 | MTR_2g090515 | 78.182 | 55 | 12 | 0 | 1 | 55 | 1 | 55 | 6.87e-23 | 88.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043424.t1 | AT4G20970 | 40.884 | 181 | 87 | 6 | 12 | 175 | 11 | 188 | 4.65e-34 | 120 |
MS.gene043424.t1 | AT1G10585 | 29.825 | 171 | 114 | 3 | 7 | 175 | 9 | 175 | 4.24e-15 | 70.9 |
MS.gene043424.t1 | AT1G10586 | 26.471 | 170 | 119 | 3 | 7 | 174 | 9 | 174 | 4.38e-12 | 62.4 |
MS.gene043424.t1 | AT5G51780 | 29.586 | 169 | 105 | 3 | 14 | 169 | 3 | 170 | 1.18e-11 | 61.2 |
MS.gene043424.t1 | AT5G51780 | 29.586 | 169 | 105 | 3 | 14 | 169 | 26 | 193 | 1.73e-11 | 61.2 |
Find 43 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAACTTTAGATTTGTTTCT+AGG | 0.131020 | 2.2:+9239677 | None:intergenic |
CCGCAAACTTTGTTACAATT+TGG | 0.160686 | 2.2:-9238749 | MS.gene043424:CDS |
TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2.2:-9239470 | MS.gene043424:CDS |
CAATTGTGGGATCTTGAAAT+TGG | 0.244456 | 2.2:-9238656 | MS.gene043424:CDS |
AACAAGAAAGAAAGTTTAAA+AGG | 0.273993 | 2.2:-9239625 | MS.gene043424:CDS |
AGAGAAGAAAGAAAGTTTAA+TGG | 0.275748 | 2.2:-9239650 | MS.gene043424:CDS |
ATGTTTCTTAATTAAGGATT+TGG | 0.304277 | 2.2:+9238587 | None:intergenic |
GAGAGTTGAGTTTGGAATAG+AGG | 0.319433 | 2.2:+9240761 | None:intergenic |
AGAGTTTGTGAACGGATCTA+TGG | 0.326191 | 2.2:-9238699 | MS.gene043424:CDS |
TCTTCCTAGCTATAATTCTA+AGG | 0.332366 | 2.2:-9240737 | MS.gene043424:intron |
AGGAAGAAGAGAGTTGAGTT+TGG | 0.335218 | 2.2:+9240753 | None:intergenic |
GAGAAGAAAGAAAGTTTAAT+GGG | 0.355968 | 2.2:-9239649 | MS.gene043424:CDS |
TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2.2:-9239466 | MS.gene043424:CDS |
CTTTCGACTTTGGTTGAAGA+AGG | 0.411324 | 2.2:+9240823 | None:intergenic |
AACAGCCTTTCTTTCGACTT+TGG | 0.416457 | 2.2:+9240813 | None:intergenic |
TAATTTCACAGAAAATAAAA+TGG | 0.425918 | 2.2:+9239524 | None:intergenic |
ATAGCCTCATCTACTTGATC+AGG | 0.429867 | 2.2:+9239715 | None:intergenic |
TTGAAATTGGATCTGAGAGT+TGG | 0.440265 | 2.2:-9238643 | MS.gene043424:CDS |
CCAAATTGTAACAAAGTTTG+CGG | 0.448789 | 2.2:+9238749 | None:intergenic |
AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 2.2:-9239586 | MS.gene043424:CDS |
TGAAATTGGATCTGAGAGTT+GGG | 0.479805 | 2.2:-9238642 | MS.gene043424:CDS |
TTCAACCAAAGTCGAAAGAA+AGG | 0.497186 | 2.2:-9240818 | MS.gene043424:CDS |
CCTAGAAACAAATCTAAAGT+TGG | 0.498284 | 2.2:-9239677 | MS.gene043424:CDS |
ATTTCAAGATCCCACAATTG+AGG | 0.509351 | 2.2:+9238659 | None:intergenic |
TTAAGGATTTGGTAAACTCA+TGG | 0.514490 | 2.2:+9238598 | None:intergenic |
TCTTCATACCGTACATGCTC+AGG | 0.517547 | 2.2:-9239434 | MS.gene043424:intron |
TCATCTACTTGATCAGGTAA+TGG | 0.522136 | 2.2:+9239721 | None:intergenic |
TGGAACATAATCAACAAGAA+TGG | 0.524412 | 2.2:-9240849 | MS.gene043424:CDS |
GAGTTTGTGAACGGATCTAT+GGG | 0.526348 | 2.2:-9238698 | MS.gene043424:CDS |
TATATATACCTGAGCATGTA+CGG | 0.538419 | 2.2:+9239426 | None:intergenic |
TACAAGTGATTGTAACATGT+GGG | 0.544345 | 2.2:-9239555 | MS.gene043424:CDS |
GGAAACACAGCCTCAATTGT+GGG | 0.559018 | 2.2:-9238669 | MS.gene043424:CDS |
TGGAAACACAGCCTCAATTG+TGG | 0.568137 | 2.2:-9238670 | MS.gene043424:CDS |
TTCACCTTAGAATTATAGCT+AGG | 0.582785 | 2.2:+9240733 | None:intergenic |
TGTTACAATCACTTGTAGAG+TGG | 0.604182 | 2.2:+9239561 | None:intergenic |
GTTACAATCACTTGTAGAGT+GGG | 0.605139 | 2.2:+9239562 | None:intergenic |
CTACAAGTGATTGTAACATG+TGG | 0.615945 | 2.2:-9239556 | MS.gene043424:CDS |
AGGTTGAAAGAGTTTGTGAA+CGG | 0.618184 | 2.2:-9238707 | MS.gene043424:CDS |
GAGCAATCAAAATAAGCGAG+AGG | 0.636400 | 2.2:-9238727 | MS.gene043424:CDS |
ATTACCTGATCAAGTAGATG+AGG | 0.636526 | 2.2:-9239719 | MS.gene043424:CDS |
GAACGGATCTATGGGCGATG+TGG | 0.672622 | 2.2:-9238690 | MS.gene043424:CDS |
ACAAGTGATTGTAACATGTG+GGG | 0.739715 | 2.2:-9239554 | MS.gene043424:CDS |
ACTGCATGAAGAGAACGTCG+AGG | 0.768331 | 2.2:-9239494 | MS.gene043424:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTGAATAAATTTAATAC+AGG | - | chr2.2:9239693-9239712 | MS.gene043424:CDS | 10.0% |
!!! | TAAATTTATTTCTCTAAATT+CGG | + | chr2.2:9239105-9239124 | None:intergenic | 10.0% |
!!! | TTTATTTTTTATTGTTATGA+TGG | - | chr2.2:9239011-9239030 | MS.gene043424:intron | 10.0% |
!! | ACCTAAAATATAGAATATAT+TGG | + | chr2.2:9239341-9239360 | None:intergenic | 15.0% |
!! | TAATTTCACAGAAAATAAAA+TGG | + | chr2.2:9239927-9239946 | None:intergenic | 15.0% |
!!! | TCCAATATATTCTATATTTT+AGG | - | chr2.2:9239337-9239356 | MS.gene043424:intron | 15.0% |
!!! | TTCTGATTTGATTATTAATT+TGG | - | chr2.2:9240667-9240686 | MS.gene043424:intron | 15.0% |
!! | AAAAATAGAGATTCATGAAA+TGG | - | chr2.2:9239861-9239880 | MS.gene043424:intron | 20.0% |
!! | AAAACAATGTGTTAAATAGT+AGG | + | chr2.2:9239278-9239297 | None:intergenic | 20.0% |
!! | AAAATAGAGATTCATGAAAT+GGG | - | chr2.2:9239862-9239881 | MS.gene043424:intron | 20.0% |
!! | AAACAATGTGTTAAATAGTA+GGG | + | chr2.2:9239277-9239296 | None:intergenic | 20.0% |
!! | AACAAGAAAGAAAGTTTAAA+AGG | - | chr2.2:9239823-9239842 | MS.gene043424:intron | 20.0% |
!! | CAAAAAGAATATACATATGT+GGG | + | chr2.2:9238939-9238958 | None:intergenic | 20.0% |
!! | TATTGGAATATCATGAATAT+CGG | + | chr2.2:9239324-9239343 | None:intergenic | 20.0% |
!! | TCAAATGAATATACATATGT+GGG | + | chr2.2:9238967-9238986 | None:intergenic | 20.0% |
!! | TTATTCAATAATGCTACATT+AGG | + | chr2.2:9239684-9239703 | None:intergenic | 20.0% |
!!! | AATTTCGAGCATATTTTTTA+GGG | + | chr2.2:9240405-9240424 | None:intergenic | 20.0% |
!!! | ACTATTTAACACATTGTTTT+TGG | - | chr2.2:9239278-9239297 | MS.gene043424:intron | 20.0% |
!!! | ATTTCATGAATCTCTATTTT+TGG | + | chr2.2:9239862-9239881 | None:intergenic | 20.0% |
!!! | CATTTTTTGCATTAAGTTTT+GGG | + | chr2.2:9240448-9240467 | None:intergenic | 20.0% |
!!! | TCATTTTTTGCATTAAGTTT+TGG | + | chr2.2:9240449-9240468 | None:intergenic | 20.0% |
!!! | TTATTATTCAAATGCACTTT+TGG | + | chr2.2:9240544-9240563 | None:intergenic | 20.0% |
!!! | TTTTATAGCGTTAAAAGATA+AGG | - | chr2.2:9240196-9240215 | MS.gene043424:intron | 20.0% |
! | AAATGTTAACAAGTGTTCTT+GGG | + | chr2.2:9238916-9238935 | None:intergenic | 25.0% |
! | ACTAGACTTGAATACATATT+TGG | - | chr2.2:9240152-9240171 | MS.gene043424:intron | 25.0% |
! | AGAGAAGAAAGAAAGTTTAA+TGG | - | chr2.2:9239798-9239817 | MS.gene043424:intron | 25.0% |
! | CAAATGAATATACATATGTG+GGG | + | chr2.2:9238966-9238985 | None:intergenic | 25.0% |
! | CAACTAGATTTATAGAATTC+AGG | - | chr2.2:9239428-9239447 | MS.gene043424:intron | 25.0% |
! | CATATTTGATGAAAATAGGT+TGG | + | chr2.2:9239595-9239614 | None:intergenic | 25.0% |
! | CCAAAAAGAATATACATATG+TGG | + | chr2.2:9238940-9238959 | None:intergenic | 25.0% |
! | CTACCATATTTGATGAAAAT+AGG | + | chr2.2:9239599-9239618 | None:intergenic | 25.0% |
! | CTCAAATGAATATACATATG+TGG | + | chr2.2:9238968-9238987 | None:intergenic | 25.0% |
! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2.2:9239799-9239818 | MS.gene043424:intron | 25.0% |
! | TAAAAAGACAAGGTTGAATA+TGG | + | chr2.2:9240181-9240200 | None:intergenic | 25.0% |
! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2.2:9239978-9239997 | MS.gene043424:intron | 25.0% |
! | TGAAATTTCACAAGTATGAT+GGG | + | chr2.2:9239648-9239667 | None:intergenic | 25.0% |
! | TTAAAAAAAAATCGCACGTT+TGG | + | chr2.2:9240519-9240538 | None:intergenic | 25.0% |
! | TTATGCTAACAAATACCTAA+AGG | - | chr2.2:9238770-9238789 | MS.gene043424:intron | 25.0% |
! | TTTAACGCTATAAAAAGACA+AGG | + | chr2.2:9240191-9240210 | None:intergenic | 25.0% |
! | TTTCATCACGTATATATGTA+GGG | - | chr2.2:9238747-9238766 | MS.gene043424:CDS | 25.0% |
!! | ATTTATTTCTCTAAATTCGG+TGG | + | chr2.2:9239102-9239121 | None:intergenic | 25.0% |
!! | CAACCTATTTTCATCAAATA+TGG | - | chr2.2:9239593-9239612 | MS.gene043424:CDS | 25.0% |
!! | CCACATATGTATATTCTTTT+TGG | - | chr2.2:9238937-9238956 | MS.gene043424:intron | 25.0% |
!! | CTCTTAACAATATTTTGCAA+AGG | - | chr2.2:9240594-9240613 | MS.gene043424:intron | 25.0% |
!! | GCAGCTTTAATATAATACAA+GGG | + | chr2.2:9240105-9240124 | None:intergenic | 25.0% |
!! | TCGAAAATTTTTCTGACTTT+TGG | + | chr2.2:9240332-9240351 | None:intergenic | 25.0% |
!! | TGCAGCTTTAATATAATACA+AGG | + | chr2.2:9240106-9240125 | None:intergenic | 25.0% |
!! | TTTTCATCACGTATATATGT+AGG | - | chr2.2:9238746-9238765 | MS.gene043424:CDS | 25.0% |
!!! | ACATAGATCTTATTTTGTGA+AGG | - | chr2.2:9239168-9239187 | MS.gene043424:intron | 25.0% |
!!! | AGTTTAATTTGCATCACATT+AGG | - | chr2.2:9239537-9239556 | MS.gene043424:CDS | 25.0% |
!!! | CAATTTCGAGCATATTTTTT+AGG | + | chr2.2:9240406-9240425 | None:intergenic | 25.0% |
!!! | TCAAGTCTAGTTTTAAACTA+CGG | + | chr2.2:9240143-9240162 | None:intergenic | 25.0% |
!!! | TGATGATGTAAAACTTTTGA+GGG | - | chr2.2:9240305-9240324 | MS.gene043424:intron | 25.0% |
AATCCTTAAACAATGCCTTT+AGG | + | chr2.2:9238788-9238807 | None:intergenic | 30.0% | |
ATTAAAGCTGCAATTGCAAT+TGG | - | chr2.2:9240114-9240133 | MS.gene043424:intron | 30.0% | |
CCAAATTGTAACAAAGTTTG+CGG | + | chr2.2:9240702-9240721 | None:intergenic | 30.0% | |
GAAAGACTAAATCATGTTTC+TGG | - | chr2.2:9240481-9240500 | MS.gene043424:intron | 30.0% | |
GAAATGTTAACAAGTGTTCT+TGG | + | chr2.2:9238917-9238936 | None:intergenic | 30.0% | |
GGGTTTATGAAGGAAAAAAA+GGG | + | chr2.2:9239628-9239647 | None:intergenic | 30.0% | |
GTGAAATTTCACAAGTATGA+TGG | + | chr2.2:9239649-9239668 | None:intergenic | 30.0% | |
TACAAGTGATTGTAACATGT+GGG | - | chr2.2:9239893-9239912 | MS.gene043424:intron | 30.0% | |
TATATATACCTGAGCATGTA+CGG | + | chr2.2:9240025-9240044 | None:intergenic | 30.0% | |
TCTTCCTAGCTATAATTCTA+AGG | - | chr2.2:9238711-9238730 | MS.gene043424:CDS | 30.0% | |
TGGAACATAATCAACAAGAA+TGG | - | chr2.2:9238599-9238618 | MS.gene043424:CDS | 30.0% | |
TGGGTTTATGAAGGAAAAAA+AGG | + | chr2.2:9239629-9239648 | None:intergenic | 30.0% | |
TTCACCTTAGAATTATAGCT+AGG | + | chr2.2:9238718-9238737 | None:intergenic | 30.0% | |
! | CCAACTTTAGATTTGTTTCT+AGG | + | chr2.2:9239774-9239793 | None:intergenic | 30.0% |
! | CCTAGAAACAAATCTAAAGT+TGG | - | chr2.2:9239771-9239790 | MS.gene043424:intron | 30.0% |
! | TTAAGGATTTGGTAAACTCA+TGG | + | chr2.2:9240853-9240872 | None:intergenic | 30.0% |
!! | ATACCTAAAGGCATTGTTTA+AGG | - | chr2.2:9238782-9238801 | MS.gene043424:intron | 30.0% |
!! | GTGATGATGTAAAACTTTTG+AGG | - | chr2.2:9240304-9240323 | MS.gene043424:intron | 30.0% |
!! | GTTTTTAGATTCAATTTGCC+AGG | + | chr2.2:9239255-9239274 | None:intergenic | 30.0% |
ACAAGTGATTGTAACATGTG+GGG | - | chr2.2:9239894-9239913 | MS.gene043424:intron | 35.0% | |
AGGTTGAAAGAGTTTGTGAA+CGG | - | chr2.2:9240741-9240760 | MS.gene043424:CDS | 35.0% | |
ATTACCTGATCAAGTAGATG+AGG | - | chr2.2:9239729-9239748 | MS.gene043424:CDS | 35.0% | |
ATTTCAAGATCCCACAATTG+AGG | + | chr2.2:9240792-9240811 | None:intergenic | 35.0% | |
CAATTGTGGGATCTTGAAAT+TGG | - | chr2.2:9240792-9240811 | MS.gene043424:CDS | 35.0% | |
CCGCAAACTTTGTTACAATT+TGG | - | chr2.2:9240699-9240718 | MS.gene043424:intron | 35.0% | |
CTACAAGTGATTGTAACATG+TGG | - | chr2.2:9239892-9239911 | MS.gene043424:intron | 35.0% | |
GAAAGGCTGTTGAGAAAAAT+AGG | - | chr2.2:9238647-9238666 | MS.gene043424:CDS | 35.0% | |
GATGAAGAAGATAGTTTCGT+AGG | + | chr2.2:9239366-9239385 | None:intergenic | 35.0% | |
GTTACAATCACTTGTAGAGT+GGG | + | chr2.2:9239889-9239908 | None:intergenic | 35.0% | |
TCATCTACTTGATCAGGTAA+TGG | + | chr2.2:9239730-9239749 | None:intergenic | 35.0% | |
TCTTCAAATTCTTCTTTGGC+TGG | - | chr2.2:9239982-9240001 | MS.gene043424:intron | 35.0% | |
TGAAATTGGATCTGAGAGTT+GGG | - | chr2.2:9240806-9240825 | MS.gene043424:CDS | 35.0% | |
TGTTACAATCACTTGTAGAG+TGG | + | chr2.2:9239890-9239909 | None:intergenic | 35.0% | |
TTCAACCAAAGTCGAAAGAA+AGG | - | chr2.2:9238630-9238649 | MS.gene043424:CDS | 35.0% | |
TTGAAATTGGATCTGAGAGT+TGG | - | chr2.2:9240805-9240824 | MS.gene043424:CDS | 35.0% | |
! | GGTTGGTTCAAAGATTTGAA+TGG | + | chr2.2:9239578-9239597 | None:intergenic | 35.0% |
! | TATGCTCGAAATTGAGTTGT+AGG | - | chr2.2:9240412-9240431 | MS.gene043424:intron | 35.0% |
!! | CAAGTATGATGGGTTTATGA+AGG | + | chr2.2:9239638-9239657 | None:intergenic | 35.0% |
!! | CTCTGACAAATTGATTTGCA+GGG | + | chr2.2:9239224-9239243 | None:intergenic | 35.0% |
!! | TCTGACAAATTGATTTGCAG+GGG | + | chr2.2:9239223-9239242 | None:intergenic | 35.0% |
!! | TGCAGGGGTTTTATCAATTT+GGG | + | chr2.2:9239208-9239227 | None:intergenic | 35.0% |
!! | TTGCAGGGGTTTTATCAATT+TGG | + | chr2.2:9239209-9239228 | None:intergenic | 35.0% |
AACAGCCTTTCTTTCGACTT+TGG | + | chr2.2:9238638-9238657 | None:intergenic | 40.0% | |
ACGTAACATACCACAAGCTA+AGG | - | chr2.2:9239129-9239148 | MS.gene043424:intron | 40.0% | |
AGAGTTTGTGAACGGATCTA+TGG | - | chr2.2:9240749-9240768 | MS.gene043424:CDS | 40.0% | |
AGGAAGAAGAGAGTTGAGTT+TGG | + | chr2.2:9238698-9238717 | None:intergenic | 40.0% | |
ATAGCCTCATCTACTTGATC+AGG | + | chr2.2:9239736-9239755 | None:intergenic | 40.0% | |
CCTGCAAATCAATTTGTCAG+AGG | - | chr2.2:9239222-9239241 | MS.gene043424:intron | 40.0% | |
CTTTCGACTTTGGTTGAAGA+AGG | + | chr2.2:9238628-9238647 | None:intergenic | 40.0% | |
GAGCAATCAAAATAAGCGAG+AGG | - | chr2.2:9240721-9240740 | MS.gene043424:intron | 40.0% | |
GAGTTTGTGAACGGATCTAT+GGG | - | chr2.2:9240750-9240769 | MS.gene043424:CDS | 40.0% | |
GATGGAAATAATGCGACATG+TGG | - | chr2.2:9239029-9239048 | MS.gene043424:intron | 40.0% | |
TTTGTCAGAGGTCAAAAACC+TGG | - | chr2.2:9239234-9239253 | MS.gene043424:intron | 40.0% | |
! | GAGAGTTGAGTTTGGAATAG+AGG | + | chr2.2:9238690-9238709 | None:intergenic | 40.0% |
!! | CAGGGGTTTTATCAATTTGG+GGG | + | chr2.2:9239206-9239225 | None:intergenic | 40.0% |
!! | CCTCTGACAAATTGATTTGC+AGG | + | chr2.2:9239225-9239244 | None:intergenic | 40.0% |
!! | CGCGTGCAAAATTAGTTTGT+TGG | + | chr2.2:9239392-9239411 | None:intergenic | 40.0% |
!! | GATAGTTTAGCCTTAGCTTG+TGG | + | chr2.2:9239142-9239161 | None:intergenic | 40.0% |
!! | GCAGGGGTTTTATCAATTTG+GGG | + | chr2.2:9239207-9239226 | None:intergenic | 40.0% |
GGAAACACAGCCTCAATTGT+GGG | - | chr2.2:9240779-9240798 | MS.gene043424:CDS | 45.0% | |
TCTTCATACCGTACATGCTC+AGG | - | chr2.2:9240014-9240033 | MS.gene043424:intron | 45.0% | |
TGGAAACACAGCCTCAATTG+TGG | - | chr2.2:9240778-9240797 | MS.gene043424:CDS | 45.0% | |
ACTGCATGAAGAGAACGTCG+AGG | - | chr2.2:9239954-9239973 | MS.gene043424:intron | 50.0% | |
GAACGGATCTATGGGCGATG+TGG | - | chr2.2:9240758-9240777 | MS.gene043424:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 9238598 | 9240872 | 9238598 | ID=MS.gene043424 |
chr2.2 | mRNA | 9238598 | 9240872 | 9238598 | ID=MS.gene043424.t1;Parent=MS.gene043424 |
chr2.2 | exon | 9240738 | 9240872 | 9240738 | ID=MS.gene043424.t1.exon1;Parent=MS.gene043424.t1 |
chr2.2 | CDS | 9240738 | 9240872 | 9240738 | ID=cds.MS.gene043424.t1;Parent=MS.gene043424.t1 |
chr2.2 | exon | 9239435 | 9239755 | 9239435 | ID=MS.gene043424.t1.exon2;Parent=MS.gene043424.t1 |
chr2.2 | CDS | 9239435 | 9239755 | 9239435 | ID=cds.MS.gene043424.t1;Parent=MS.gene043424.t1 |
chr2.2 | exon | 9238598 | 9238774 | 9238598 | ID=MS.gene043424.t1.exon3;Parent=MS.gene043424.t1 |
chr2.2 | CDS | 9238598 | 9238774 | 9238598 | ID=cds.MS.gene043424.t1;Parent=MS.gene043424.t1 |
Gene Sequence |
Protein sequence |