Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043462.t1 | XP_013465160.1 | 99.3 | 286 | 1 | 1 | 1 | 286 | 1 | 285 | 2.20E-166 | 594.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043462.t1 | O49459 | 81.5 | 195 | 34 | 2 | 25 | 218 | 36 | 229 | 1.3e-93 | 344.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043462.t1 | A0A072VM12 | 99.3 | 286 | 1 | 1 | 1 | 286 | 1 | 285 | 1.6e-166 | 594.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene043462.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043462.t1 | MTR_2g090735 | 99.301 | 286 | 1 | 1 | 1 | 286 | 1 | 285 | 0.0 | 592 |
MS.gene043462.t1 | MTR_4g078875 | 76.897 | 290 | 57 | 5 | 1 | 286 | 1 | 284 | 7.47e-157 | 438 |
MS.gene043462.t1 | MTR_4g088245 | 64.561 | 285 | 87 | 7 | 9 | 285 | 26 | 304 | 1.30e-123 | 355 |
MS.gene043462.t1 | MTR_2g014680 | 57.432 | 296 | 113 | 5 | 1 | 286 | 1 | 293 | 5.92e-115 | 333 |
MS.gene043462.t1 | MTR_8g069160 | 83.240 | 179 | 29 | 1 | 26 | 204 | 46 | 223 | 1.26e-108 | 315 |
MS.gene043462.t1 | MTR_8g102240 | 73.737 | 198 | 40 | 4 | 27 | 217 | 30 | 222 | 1.20e-95 | 290 |
MS.gene043462.t1 | MTR_8g102240 | 73.737 | 198 | 40 | 4 | 27 | 217 | 30 | 222 | 1.23e-95 | 290 |
MS.gene043462.t1 | MTR_5g053430 | 55.446 | 202 | 86 | 2 | 20 | 221 | 32 | 229 | 2.38e-70 | 224 |
MS.gene043462.t1 | MTR_5g053430 | 55.446 | 202 | 86 | 2 | 20 | 221 | 32 | 229 | 3.66e-70 | 223 |
MS.gene043462.t1 | MTR_1g093680 | 57.068 | 191 | 78 | 2 | 25 | 215 | 37 | 223 | 4.09e-70 | 224 |
MS.gene043462.t1 | MTR_7g033320 | 54.595 | 185 | 80 | 2 | 25 | 208 | 34 | 215 | 2.80e-63 | 207 |
MS.gene043462.t1 | MTR_1g093670 | 51.163 | 172 | 69 | 1 | 44 | 215 | 18 | 174 | 1.58e-49 | 167 |
MS.gene043462.t1 | MTR_4g078895 | 81.132 | 53 | 10 | 0 | 38 | 90 | 26 | 78 | 2.11e-24 | 94.0 |
MS.gene043462.t1 | MTR_1g008740 | 31.841 | 201 | 106 | 9 | 49 | 240 | 13 | 191 | 1.34e-15 | 76.3 |
MS.gene043462.t1 | MTR_1g008740 | 31.841 | 201 | 106 | 9 | 49 | 240 | 27 | 205 | 1.49e-15 | 76.3 |
MS.gene043462.t1 | MTR_6g084430 | 32.402 | 179 | 94 | 7 | 48 | 217 | 4 | 164 | 3.69e-14 | 72.0 |
MS.gene043462.t1 | MTR_7g085260 | 32.995 | 197 | 95 | 9 | 49 | 227 | 17 | 194 | 3.72e-14 | 72.4 |
MS.gene043462.t1 | MTR_3g070030 | 33.333 | 168 | 84 | 7 | 49 | 206 | 19 | 168 | 3.95e-14 | 72.0 |
MS.gene043462.t1 | MTR_3g109340 | 31.492 | 181 | 96 | 8 | 34 | 206 | 9 | 169 | 4.44e-14 | 72.0 |
MS.gene043462.t1 | MTR_2g014700 | 65.116 | 43 | 15 | 0 | 114 | 156 | 44 | 86 | 1.89e-13 | 65.5 |
MS.gene043462.t1 | MTR_3g435150 | 31.694 | 183 | 96 | 7 | 49 | 220 | 16 | 180 | 2.88e-13 | 68.9 |
MS.gene043462.t1 | MTR_7g011120 | 29.348 | 184 | 97 | 6 | 49 | 218 | 8 | 172 | 8.19e-13 | 67.8 |
MS.gene043462.t1 | MTR_4g108760 | 31.579 | 171 | 88 | 7 | 49 | 209 | 17 | 168 | 9.10e-13 | 68.2 |
MS.gene043462.t1 | MTR_6g012670 | 31.746 | 189 | 96 | 9 | 49 | 226 | 20 | 186 | 1.81e-12 | 67.0 |
MS.gene043462.t1 | MTR_2g080010 | 29.448 | 163 | 95 | 6 | 34 | 193 | 1 | 146 | 4.90e-12 | 65.9 |
MS.gene043462.t1 | MTR_1g069805 | 28.313 | 166 | 96 | 6 | 48 | 208 | 9 | 156 | 3.30e-11 | 62.8 |
MS.gene043462.t1 | MTR_3g096920 | 33.562 | 146 | 75 | 7 | 49 | 191 | 7 | 133 | 5.04e-11 | 62.4 |
MS.gene043462.t1 | MTR_3g096920 | 33.562 | 146 | 75 | 7 | 49 | 191 | 7 | 133 | 5.21e-11 | 62.8 |
MS.gene043462.t1 | MTR_8g094580 | 32.192 | 146 | 77 | 6 | 49 | 191 | 7 | 133 | 6.49e-11 | 62.0 |
MS.gene043462.t1 | MTR_2g078700 | 30.952 | 168 | 89 | 7 | 49 | 206 | 23 | 173 | 6.90e-11 | 62.4 |
MS.gene043462.t1 | MTR_3g088110 | 32.639 | 144 | 79 | 6 | 49 | 191 | 7 | 133 | 7.78e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043462.t1 | AT4G28500 | 79.104 | 201 | 40 | 2 | 25 | 224 | 36 | 235 | 9.11e-117 | 338 |
MS.gene043462.t1 | AT1G28470 | 76.289 | 194 | 44 | 1 | 24 | 215 | 50 | 243 | 2.70e-105 | 309 |
MS.gene043462.t1 | AT4G29230 | 71.144 | 201 | 45 | 2 | 25 | 217 | 29 | 224 | 3.09e-97 | 293 |
MS.gene043462.t1 | AT4G29230 | 71.144 | 201 | 45 | 2 | 25 | 217 | 29 | 224 | 9.51e-97 | 293 |
MS.gene043462.t1 | AT4G29230 | 71.144 | 201 | 44 | 2 | 25 | 217 | 29 | 223 | 2.22e-96 | 292 |
MS.gene043462.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 27 | 214 | 25 | 219 | 2.10e-90 | 275 |
MS.gene043462.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 27 | 214 | 25 | 219 | 2.65e-90 | 274 |
MS.gene043462.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 27 | 214 | 25 | 219 | 4.80e-90 | 273 |
MS.gene043462.t1 | AT1G25580 | 57.143 | 189 | 71 | 4 | 25 | 213 | 37 | 215 | 1.47e-65 | 212 |
MS.gene043462.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 30 | 213 | 30 | 218 | 1.12e-54 | 179 |
MS.gene043462.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 30 | 213 | 30 | 218 | 1.87e-54 | 180 |
MS.gene043462.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 30 | 213 | 33 | 221 | 2.10e-54 | 180 |
MS.gene043462.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 30 | 213 | 33 | 221 | 2.29e-54 | 180 |
MS.gene043462.t1 | AT3G01600 | 51.064 | 188 | 84 | 3 | 30 | 210 | 30 | 216 | 1.30e-53 | 178 |
MS.gene043462.t1 | AT3G04060 | 32.961 | 179 | 96 | 6 | 41 | 211 | 12 | 174 | 1.42e-15 | 76.3 |
MS.gene043462.t1 | AT5G18270 | 34.637 | 179 | 91 | 7 | 42 | 211 | 14 | 175 | 1.70e-15 | 75.9 |
MS.gene043462.t1 | AT5G18270 | 34.637 | 179 | 91 | 7 | 42 | 211 | 14 | 175 | 2.70e-15 | 75.5 |
MS.gene043462.t1 | AT3G18400 | 34.337 | 166 | 83 | 8 | 48 | 206 | 4 | 150 | 2.45e-14 | 72.4 |
MS.gene043462.t1 | AT5G07680 | 32.143 | 168 | 91 | 5 | 49 | 209 | 3 | 154 | 2.50e-13 | 69.3 |
MS.gene043462.t1 | AT3G29035 | 32.941 | 170 | 83 | 8 | 49 | 207 | 24 | 173 | 2.71e-13 | 69.3 |
MS.gene043462.t1 | AT5G07680 | 32.143 | 168 | 91 | 5 | 49 | 209 | 17 | 168 | 2.75e-13 | 69.3 |
MS.gene043462.t1 | AT5G39610 | 33.929 | 168 | 82 | 7 | 49 | 206 | 20 | 168 | 4.56e-13 | 68.6 |
MS.gene043462.t1 | AT5G61430 | 31.953 | 169 | 90 | 6 | 49 | 209 | 16 | 167 | 7.39e-13 | 68.2 |
MS.gene043462.t1 | AT1G01720 | 31.333 | 150 | 85 | 5 | 43 | 191 | 1 | 133 | 1.37e-12 | 67.0 |
MS.gene043462.t1 | AT1G02230 | 32.877 | 146 | 73 | 7 | 50 | 188 | 4 | 131 | 1.06e-11 | 65.1 |
MS.gene043462.t1 | AT5G08790 | 32.877 | 146 | 76 | 6 | 49 | 191 | 7 | 133 | 1.13e-11 | 64.3 |
MS.gene043462.t1 | AT1G76420 | 31.844 | 179 | 92 | 9 | 48 | 216 | 21 | 179 | 1.69e-11 | 64.3 |
MS.gene043462.t1 | AT4G35580 | 29.082 | 196 | 106 | 10 | 42 | 226 | 2 | 175 | 3.61e-11 | 63.9 |
MS.gene043462.t1 | AT4G35580 | 29.082 | 196 | 106 | 10 | 42 | 226 | 2 | 175 | 3.87e-11 | 63.5 |
MS.gene043462.t1 | AT4G35580 | 29.082 | 196 | 106 | 10 | 42 | 226 | 2 | 175 | 3.90e-11 | 63.5 |
MS.gene043462.t1 | AT1G33060 | 29.268 | 164 | 89 | 8 | 42 | 198 | 17 | 160 | 5.17e-11 | 63.5 |
MS.gene043462.t1 | AT1G33060 | 29.268 | 164 | 89 | 8 | 42 | 198 | 17 | 160 | 5.25e-11 | 63.5 |
Find 51 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTTGCCACTCACGAAAAC+TGG | 0.294833 | 2.2:+8712930 | None:intergenic |
GAAAGCCAGAGAAAACAAAT+TGG | 0.314159 | 2.2:-8712857 | MS.gene043462:CDS |
TCAAGAGATTCTTGAACATT+TGG | 0.330357 | 2.2:-8713339 | MS.gene043462:CDS |
CACATTGTCTAGGCTGTGTT+TGG | 0.340883 | 2.2:+8712760 | None:intergenic |
AATTAACCTGGTAATTTCTC+TGG | 0.347710 | 2.2:+8713221 | None:intergenic |
AGAGGAGAAAGAAGGAGAAT+TGG | 0.354646 | 2.2:-8712802 | MS.gene043462:CDS |
TTCGTGAGTGGCAAGTTAAA+AGG | 0.360040 | 2.2:-8712924 | MS.gene043462:CDS |
TAATCATAGTACTATCCTTA+TGG | 0.361262 | 2.2:-8713709 | MS.gene043462:CDS |
CATTATTTCCAAGATGGTAT+TGG | 0.373788 | 2.2:+8712826 | None:intergenic |
GAGTTGCCTGGATTACCTGC+TGG | 0.394171 | 2.2:-8713383 | MS.gene043462:CDS |
GAATTCATCCCTACTCTTGA+AGG | 0.419664 | 2.2:-8713269 | MS.gene043462:CDS |
GTTAATTAATTATAGGGTGC+TGG | 0.422909 | 2.2:-8713413 | MS.gene043462:intron |
GGGATGAATTCATCAATTAA+AGG | 0.427373 | 2.2:+8713281 | None:intergenic |
CCTCTTCATTATTTCCAAGA+TGG | 0.434430 | 2.2:+8712820 | None:intergenic |
GAAACAAGATGGCACAAAAC+AGG | 0.437008 | 2.2:-8712963 | MS.gene043462:CDS |
CTGTGTTTGGTAGAAAACTT+TGG | 0.443831 | 2.2:+8712773 | None:intergenic |
CCTACTCTTGAAGGAGAGAA+TGG | 0.452976 | 2.2:-8713260 | MS.gene043462:CDS |
AGTTGCCTGGATTACCTGCT+GGG | 0.468652 | 2.2:-8713382 | MS.gene043462:CDS |
TTCACCCCAGCAGGTAATCC+AGG | 0.471003 | 2.2:+8713377 | None:intergenic |
GCTGGAATTCATGAGTTGCC+TGG | 0.479458 | 2.2:-8713395 | MS.gene043462:CDS |
TATGCAGGTGTCGGCAAAGA+TGG | 0.479967 | 2.2:-8713077 | MS.gene043462:intron |
CCATTCTCTCCTTCAAGAGT+AGG | 0.481831 | 2.2:+8713260 | None:intergenic |
TGATCCGACATTTCTTTCAC+CGG | 0.491329 | 2.2:-8713052 | MS.gene043462:CDS |
GGATCAAACTTCACCCCAGC+AGG | 0.493343 | 2.2:+8713368 | None:intergenic |
GTTATGCACCAATACCATCT+TGG | 0.493624 | 2.2:-8712834 | MS.gene043462:CDS |
CATTCTCTCCTTCAAGAGTA+GGG | 0.494352 | 2.2:+8713261 | None:intergenic |
TATCTTTGCGTCTCTCCATA+AGG | 0.495599 | 2.2:+8713694 | None:intergenic |
CCATCAAAAGCATACACAAC+AGG | 0.501280 | 2.2:-8713029 | MS.gene043462:CDS |
TCATATCAAATGCCAAGATC+AGG | 0.502996 | 2.2:-8713640 | MS.gene043462:intron |
AAAGCCAGAGAAAACAAATT+GGG | 0.504516 | 2.2:-8712856 | MS.gene043462:CDS |
GAATGTGAAGAACCTGATCT+TGG | 0.505797 | 2.2:+8713628 | None:intergenic |
AATAATGAAGAGGAGAAAGA+AGG | 0.526318 | 2.2:-8712810 | MS.gene043462:CDS |
TCAAGAATCTCTTGATCAGT+AGG | 0.542994 | 2.2:+8713347 | None:intergenic |
AAAGATGTACCATCATGGAC+AGG | 0.570055 | 2.2:+8712552 | None:intergenic |
GAATGAAAGATGTACCATCA+TGG | 0.578897 | 2.2:+8712547 | None:intergenic |
ACTCATCCAGAGAAATTACC+AGG | 0.579439 | 2.2:-8713227 | MS.gene043462:intron |
TTGATATGATGACCACATGT+AGG | 0.596208 | 2.2:+8713654 | None:intergenic |
AATGAACCACCACATTGTCT+AGG | 0.596526 | 2.2:+8712750 | None:intergenic |
TGTAGTTAGTGTAAAGCACA+AGG | 0.598633 | 2.2:+8712889 | None:intergenic |
ATGGCCGGTGAAAGAAATGT+CGG | 0.616052 | 2.2:+8713048 | None:intergenic |
AACATTTGGAAGCAAAAGTG+AGG | 0.616853 | 2.2:-8713325 | MS.gene043462:CDS |
CCATCTTGGAAATAATGAAG+AGG | 0.636615 | 2.2:-8712820 | MS.gene043462:CDS |
ATCAGAACTTGTCCTACATG+TGG | 0.643015 | 2.2:-8713666 | MS.gene043462:CDS |
AAAGTGCACACAGATGCTGA+TGG | 0.650930 | 2.2:-8712990 | MS.gene043462:CDS |
GGCACAAAACAGGTAAAACA+AGG | 0.653352 | 2.2:-8712953 | MS.gene043462:CDS |
CTGATGGAAGTGAAACAAGA+TGG | 0.659352 | 2.2:-8712974 | MS.gene043462:CDS |
CAAACACAGCCTAGACAATG+TGG | 0.666262 | 2.2:-8712759 | MS.gene043462:CDS |
GTTGCCTGGATTACCTGCTG+GGG | 0.708832 | 2.2:-8713381 | MS.gene043462:CDS |
ACACAGCCTAGACAATGTGG+TGG | 0.735435 | 2.2:-8712756 | MS.gene043462:CDS |
TCAAGGTGTGAATCATGAGG+TGG | 0.742861 | 2.2:-8712682 | MS.gene043462:CDS |
TGATCAAGGTGTGAATCATG+AGG | 0.746754 | 2.2:-8712685 | MS.gene043462:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACTAAGAATATAAATATTG+TGG | - | chr2.2:8712840-8712859 | MS.gene043462:CDS | 15.0% |
!!! | TTTTCTGATAAAAAACTAAA+TGG | - | chr2.2:8713569-8713588 | MS.gene043462:intron | 15.0% |
!! | TAAAACATGTATAATTAACC+TGG | + | chr2.2:8713071-8713090 | None:intergenic | 20.0% |
!!! | ATAGTACTATGATTATTTTC+AGG | + | chr2.2:8712563-8712582 | None:intergenic | 20.0% |
!!! | ATCATATTGTTATTTTTCCT+TGG | - | chr2.2:8712784-8712803 | MS.gene043462:CDS | 20.0% |
!!! | TAGTACTATGATTATTTTCA+GGG | + | chr2.2:8712562-8712581 | None:intergenic | 20.0% |
!!! | TGTGGTGTTAATTAATTATA+GGG | - | chr2.2:8712858-8712877 | MS.gene043462:CDS | 20.0% |
!!! | TTGTGGTGTTAATTAATTAT+AGG | - | chr2.2:8712857-8712876 | MS.gene043462:CDS | 20.0% |
! | AAAAAACTAAATGGTGATCA+AGG | - | chr2.2:8713578-8713597 | MS.gene043462:intron | 25.0% |
! | ACACAAAAAATGTCATACAT+AGG | + | chr2.2:8713156-8713175 | None:intergenic | 25.0% |
! | CTATGAAAGAACAAAAGAAA+TGG | + | chr2.2:8713105-8713124 | None:intergenic | 25.0% |
! | TAAAATCATTAACATCACCA+AGG | + | chr2.2:8712804-8712823 | None:intergenic | 25.0% |
! | TAATCATAGTACTATCCTTA+TGG | - | chr2.2:8712568-8712587 | MS.gene043462:CDS | 25.0% |
!! | TCTTTCATATCTTTTGATCA+AGG | - | chr2.2:8713659-8713678 | MS.gene043462:CDS | 25.0% |
!! | TTAAAGCTCTAACAAAATCA+CGG | + | chr2.2:8712720-8712739 | None:intergenic | 25.0% |
AAAGCCAGAGAAAACAAATT+GGG | - | chr2.2:8713421-8713440 | MS.gene043462:intron | 30.0% | |
AATAATGAAGAGGAGAAAGA+AGG | - | chr2.2:8713467-8713486 | MS.gene043462:intron | 30.0% | |
AATTAACCTGGTAATTTCTC+TGG | + | chr2.2:8713059-8713078 | None:intergenic | 30.0% | |
CATTATTTCCAAGATGGTAT+TGG | + | chr2.2:8713454-8713473 | None:intergenic | 30.0% | |
GGGATGAATTCATCAATTAA+AGG | + | chr2.2:8712999-8713018 | None:intergenic | 30.0% | |
GTGGTTAATCATAAAAACAG+TGG | - | chr2.2:8713614-8713633 | MS.gene043462:intron | 30.0% | |
GTTAATTAATTATAGGGTGC+TGG | - | chr2.2:8712864-8712883 | MS.gene043462:CDS | 30.0% | |
TCAAGAGATTCTTGAACATT+TGG | - | chr2.2:8712938-8712957 | MS.gene043462:CDS | 30.0% | |
! | ATATTTTACGTCTGATATGC+AGG | - | chr2.2:8713185-8713204 | MS.gene043462:intron | 30.0% |
! | ATTTTCTGTCATCGTGATTT+TGG | + | chr2.2:8712756-8712775 | None:intergenic | 30.0% |
!! | ATAACCCAATTTGTTTTCTC+TGG | + | chr2.2:8713428-8713447 | None:intergenic | 30.0% |
AACATTTGGAAGCAAAAGTG+AGG | - | chr2.2:8712952-8712971 | MS.gene043462:CDS | 35.0% | |
CCATCTTGGAAATAATGAAG+AGG | - | chr2.2:8713457-8713476 | MS.gene043462:intron | 35.0% | |
CCTCTTCATTATTTCCAAGA+TGG | + | chr2.2:8713460-8713479 | None:intergenic | 35.0% | |
CTGTGTTTGGTAGAAAACTT+TGG | + | chr2.2:8713507-8713526 | None:intergenic | 35.0% | |
GAAAGCCAGAGAAAACAAAT+TGG | - | chr2.2:8713420-8713439 | MS.gene043462:intron | 35.0% | |
GAATGAAAGATGTACCATCA+TGG | + | chr2.2:8713733-8713752 | None:intergenic | 35.0% | |
TCAAGAATCTCTTGATCAGT+AGG | + | chr2.2:8712933-8712952 | None:intergenic | 35.0% | |
TCATATCAAATGCCAAGATC+AGG | - | chr2.2:8712637-8712656 | MS.gene043462:CDS | 35.0% | |
TGTAGTTAGTGTAAAGCACA+AGG | + | chr2.2:8713391-8713410 | None:intergenic | 35.0% | |
TTGATATGATGACCACATGT+AGG | + | chr2.2:8712626-8712645 | None:intergenic | 35.0% | |
AAAGATGTACCATCATGGAC+AGG | + | chr2.2:8713728-8713747 | None:intergenic | 40.0% | |
AATGAACCACCACATTGTCT+AGG | + | chr2.2:8713530-8713549 | None:intergenic | 40.0% | |
ACTCATCCAGAGAAATTACC+AGG | - | chr2.2:8713050-8713069 | MS.gene043462:CDS | 40.0% | |
AGAGGAGAAAGAAGGAGAAT+TGG | - | chr2.2:8713475-8713494 | MS.gene043462:intron | 40.0% | |
ATCAGAACTTGTCCTACATG+TGG | - | chr2.2:8712611-8712630 | MS.gene043462:CDS | 40.0% | |
CATTCTCTCCTTCAAGAGTA+GGG | + | chr2.2:8713019-8713038 | None:intergenic | 40.0% | |
CTCTAACAAAATCACGGTGT+CGG | + | chr2.2:8712714-8712733 | None:intergenic | 40.0% | |
CTGATGGAAGTGAAACAAGA+TGG | - | chr2.2:8713303-8713322 | MS.gene043462:CDS | 40.0% | |
GAAACAAGATGGCACAAAAC+AGG | - | chr2.2:8713314-8713333 | MS.gene043462:CDS | 40.0% | |
GAATGTGAAGAACCTGATCT+TGG | + | chr2.2:8712652-8712671 | None:intergenic | 40.0% | |
GAATTCATCCCTACTCTTGA+AGG | - | chr2.2:8713008-8713027 | MS.gene043462:CDS | 40.0% | |
GGCACAAAACAGGTAAAACA+AGG | - | chr2.2:8713324-8713343 | MS.gene043462:CDS | 40.0% | |
GTTATGCACCAATACCATCT+TGG | - | chr2.2:8713443-8713462 | MS.gene043462:intron | 40.0% | |
TATCTTTGCGTCTCTCCATA+AGG | + | chr2.2:8712586-8712605 | None:intergenic | 40.0% | |
TGATCAAGGTGTGAATCATG+AGG | - | chr2.2:8713592-8713611 | MS.gene043462:intron | 40.0% | |
TGATCCGACATTTCTTTCAC+CGG | - | chr2.2:8713225-8713244 | MS.gene043462:intron | 40.0% | |
TTCGTGAGTGGCAAGTTAAA+AGG | - | chr2.2:8713353-8713372 | MS.gene043462:CDS | 40.0% | |
! | CCATCAAAAGCATACACAAC+AGG | - | chr2.2:8713248-8713267 | MS.gene043462:CDS | 40.0% |
! | CCTGTTGTGTATGCTTTTGA+TGG | + | chr2.2:8713251-8713270 | None:intergenic | 40.0% |
! | TCTCATTTTCCTGTCCATGA+TGG | - | chr2.2:8713716-8713735 | MS.gene043462:CDS | 40.0% |
!! | TTGTGTATGCTTTTGATGGC+CGG | + | chr2.2:8713247-8713266 | None:intergenic | 40.0% |
AAAGTGCACACAGATGCTGA+TGG | - | chr2.2:8713287-8713306 | MS.gene043462:CDS | 45.0% | |
AACTTGCCACTCACGAAAAC+TGG | + | chr2.2:8713350-8713369 | None:intergenic | 45.0% | |
AGGTTCTTCACATTCGTGCA+TGG | - | chr2.2:8712657-8712676 | MS.gene043462:CDS | 45.0% | |
ATGGCCGGTGAAAGAAATGT+CGG | + | chr2.2:8713232-8713251 | None:intergenic | 45.0% | |
CAAACACAGCCTAGACAATG+TGG | - | chr2.2:8713518-8713537 | MS.gene043462:intron | 45.0% | |
CACATTGTCTAGGCTGTGTT+TGG | + | chr2.2:8713520-8713539 | None:intergenic | 45.0% | |
CCATTCTCTCCTTCAAGAGT+AGG | + | chr2.2:8713020-8713039 | None:intergenic | 45.0% | |
CCTACTCTTGAAGGAGAGAA+TGG | - | chr2.2:8713017-8713036 | MS.gene043462:CDS | 45.0% | |
TACGTCTGATATGCAGGTGT+CGG | - | chr2.2:8713191-8713210 | MS.gene043462:intron | 45.0% | |
TCAAGGTGTGAATCATGAGG+TGG | - | chr2.2:8713595-8713614 | MS.gene043462:intron | 45.0% | |
ACACAGCCTAGACAATGTGG+TGG | - | chr2.2:8713521-8713540 | MS.gene043462:intron | 50.0% | |
AGTTGCCTGGATTACCTGCT+GGG | - | chr2.2:8712895-8712914 | MS.gene043462:CDS | 50.0% | |
GCTGGAATTCATGAGTTGCC+TGG | - | chr2.2:8712882-8712901 | MS.gene043462:CDS | 50.0% | |
! | ACAAGGCCAGTTTTCGTGAG+TGG | - | chr2.2:8713341-8713360 | MS.gene043462:CDS | 50.0% |
!! | TATGCAGGTGTCGGCAAAGA+TGG | - | chr2.2:8713200-8713219 | MS.gene043462:intron | 50.0% |
GAGTTGCCTGGATTACCTGC+TGG | - | chr2.2:8712894-8712913 | MS.gene043462:CDS | 55.0% | |
GGATCAAACTTCACCCCAGC+AGG | + | chr2.2:8712912-8712931 | None:intergenic | 55.0% | |
GTTGCCTGGATTACCTGCTG+GGG | - | chr2.2:8712896-8712915 | MS.gene043462:CDS | 55.0% | |
TTCACCCCAGCAGGTAATCC+AGG | + | chr2.2:8712903-8712922 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 8712542 | 8713757 | 8712542 | ID=MS.gene043462 |
chr2.2 | mRNA | 8712542 | 8713757 | 8712542 | ID=MS.gene043462.t1;Parent=MS.gene043462 |
chr2.2 | exon | 8713641 | 8713757 | 8713641 | ID=MS.gene043462.t1.exon1;Parent=MS.gene043462.t1 |
chr2.2 | CDS | 8713641 | 8713757 | 8713641 | ID=cds.MS.gene043462.t1;Parent=MS.gene043462.t1 |
chr2.2 | exon | 8713228 | 8713420 | 8713228 | ID=MS.gene043462.t1.exon2;Parent=MS.gene043462.t1 |
chr2.2 | CDS | 8713228 | 8713420 | 8713228 | ID=cds.MS.gene043462.t1;Parent=MS.gene043462.t1 |
chr2.2 | exon | 8712542 | 8713092 | 8712542 | ID=MS.gene043462.t1.exon3;Parent=MS.gene043462.t1 |
chr2.2 | CDS | 8712542 | 8713092 | 8712542 | ID=cds.MS.gene043462.t1;Parent=MS.gene043462.t1 |
Gene Sequence |
Protein sequence |