Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043478.t1 | XP_013465197.1 | 99.1 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 1.50E-153 | 552.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043478.t1 | Q9MAH8 | 51.2 | 367 | 126 | 12 | 8 | 329 | 33 | 391 | 1.9e-48 | 194.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043478.t1 | G7ZVJ2 | 99.1 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 1.0e-153 | 552.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043478.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043478.t1 | MTR_2g090960 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 674 |
| MS.gene043478.t1 | MTR_4g079580 | 54.303 | 337 | 113 | 12 | 3 | 314 | 1 | 321 | 1.82e-104 | 309 |
| MS.gene043478.t1 | MTR_8g463380 | 42.327 | 404 | 145 | 13 | 7 | 329 | 37 | 433 | 8.31e-79 | 247 |
| MS.gene043478.t1 | MTR_2g078200 | 38.235 | 340 | 138 | 10 | 7 | 326 | 3 | 290 | 2.00e-50 | 169 |
| MS.gene043478.t1 | MTR_7g015010 | 62.162 | 74 | 28 | 0 | 18 | 91 | 51 | 124 | 2.03e-24 | 102 |
| MS.gene043478.t1 | MTR_6g015350 | 58.824 | 85 | 27 | 2 | 3 | 87 | 33 | 109 | 3.11e-23 | 98.6 |
| MS.gene043478.t1 | MTR_4g109660 | 61.765 | 68 | 26 | 0 | 18 | 85 | 50 | 117 | 2.10e-21 | 92.8 |
| MS.gene043478.t1 | MTR_3g026050 | 58.824 | 68 | 28 | 0 | 18 | 85 | 51 | 118 | 5.90e-20 | 90.1 |
| MS.gene043478.t1 | MTR_6g017055 | 50.746 | 67 | 33 | 0 | 18 | 84 | 120 | 186 | 7.23e-17 | 81.3 |
| MS.gene043478.t1 | MTR_1g103380 | 53.333 | 60 | 28 | 0 | 23 | 82 | 200 | 259 | 2.63e-16 | 79.7 |
| MS.gene043478.t1 | MTR_7g018500 | 54.386 | 57 | 26 | 0 | 26 | 82 | 122 | 178 | 9.95e-15 | 74.7 |
| MS.gene043478.t1 | MTR_4g111935 | 49.206 | 63 | 32 | 0 | 20 | 82 | 128 | 190 | 2.53e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043478.t1 | AT3G15030 | 40.852 | 399 | 145 | 14 | 8 | 326 | 29 | 416 | 2.27e-74 | 235 |
| MS.gene043478.t1 | AT3G15030 | 40.852 | 399 | 145 | 14 | 8 | 326 | 29 | 416 | 2.27e-74 | 235 |
| MS.gene043478.t1 | AT3G15030 | 40.852 | 399 | 145 | 14 | 8 | 326 | 29 | 416 | 2.27e-74 | 235 |
| MS.gene043478.t1 | AT3G15030 | 40.852 | 399 | 145 | 14 | 8 | 326 | 29 | 416 | 2.27e-74 | 235 |
| MS.gene043478.t1 | AT1G53230 | 44.022 | 368 | 151 | 13 | 8 | 329 | 33 | 391 | 2.54e-69 | 221 |
| MS.gene043478.t1 | AT1G53230 | 44.022 | 368 | 151 | 13 | 8 | 329 | 33 | 391 | 2.54e-69 | 221 |
| MS.gene043478.t1 | AT2G31070 | 47.410 | 251 | 82 | 12 | 1 | 228 | 1 | 224 | 1.16e-53 | 180 |
| MS.gene043478.t1 | AT4G18390 | 57.447 | 94 | 33 | 1 | 18 | 111 | 36 | 122 | 3.35e-27 | 110 |
| MS.gene043478.t1 | AT4G18390 | 57.447 | 94 | 33 | 1 | 18 | 111 | 36 | 122 | 3.35e-27 | 110 |
| MS.gene043478.t1 | AT3G02150 | 61.905 | 84 | 27 | 1 | 3 | 86 | 58 | 136 | 2.64e-24 | 100 |
| MS.gene043478.t1 | AT3G02150 | 61.905 | 84 | 27 | 1 | 3 | 86 | 58 | 136 | 4.16e-24 | 101 |
| MS.gene043478.t1 | AT1G30210 | 66.176 | 68 | 23 | 0 | 18 | 85 | 44 | 111 | 7.62e-23 | 97.4 |
| MS.gene043478.t1 | AT1G30210 | 66.176 | 68 | 23 | 0 | 18 | 85 | 44 | 111 | 7.62e-23 | 97.4 |
| MS.gene043478.t1 | AT5G60970 | 60.000 | 70 | 25 | 1 | 18 | 87 | 57 | 123 | 4.69e-21 | 92.8 |
| MS.gene043478.t1 | AT5G08070 | 58.333 | 72 | 28 | 1 | 18 | 87 | 27 | 98 | 7.32e-21 | 90.1 |
| MS.gene043478.t1 | AT5G08070 | 58.333 | 72 | 28 | 1 | 18 | 87 | 27 | 98 | 7.32e-21 | 90.1 |
| MS.gene043478.t1 | AT1G68800 | 40.659 | 91 | 54 | 0 | 20 | 110 | 108 | 198 | 2.13e-18 | 85.5 |
| MS.gene043478.t1 | AT1G68800 | 40.659 | 91 | 54 | 0 | 20 | 110 | 108 | 198 | 2.54e-18 | 85.1 |
| MS.gene043478.t1 | AT1G67260 | 54.545 | 66 | 30 | 0 | 19 | 84 | 82 | 147 | 3.38e-18 | 84.7 |
| MS.gene043478.t1 | AT1G67260 | 54.545 | 66 | 30 | 0 | 19 | 84 | 82 | 147 | 3.38e-18 | 84.7 |
| MS.gene043478.t1 | AT1G67260 | 54.545 | 66 | 30 | 0 | 19 | 84 | 82 | 147 | 4.10e-18 | 84.3 |
| MS.gene043478.t1 | AT3G18550 | 50.794 | 63 | 31 | 0 | 20 | 82 | 144 | 206 | 2.93e-14 | 73.6 |
| MS.gene043478.t1 | AT3G18550 | 50.000 | 64 | 32 | 0 | 19 | 82 | 143 | 206 | 3.02e-14 | 73.6 |
| MS.gene043478.t1 | AT3G18550 | 50.000 | 64 | 32 | 0 | 19 | 82 | 143 | 206 | 3.03e-14 | 73.6 |
| MS.gene043478.t1 | AT3G18550 | 50.000 | 64 | 32 | 0 | 19 | 82 | 143 | 206 | 3.03e-14 | 73.6 |
Find 70 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAATAGAACCGGGTTTA+TGG | 0.199355 | 2.2:+8504141 | MS.gene043478:CDS |
| GTTAATTCGCCTACGTTTCT+AGG | 0.206516 | 2.2:+8504163 | MS.gene043478:CDS |
| TGTAACTCTTCTGTTGCATT+TGG | 0.281307 | 2.2:-8503743 | None:intergenic |
| ATTCCCCAAGCTTCTATCTT+TGG | 0.299538 | 2.2:+8504316 | MS.gene043478:CDS |
| TCTTCTGTTGCATTTGGAAT+TGG | 0.308776 | 2.2:-8503737 | None:intergenic |
| CACCATAACCATAACCATTC+AGG | 0.316779 | 2.2:+8503866 | MS.gene043478:CDS |
| TGTATTCCTGCTAGAATTCA+AGG | 0.342553 | 2.2:+8504373 | MS.gene043478:CDS |
| GATTTGATGCTAATTATAAC+AGG | 0.345674 | 2.2:+8504095 | MS.gene043478:CDS |
| TGTTGATTGGCTCATCAAAA+AGG | 0.366611 | 2.2:+8503670 | MS.gene043478:CDS |
| ATTATAACAGGATTGTGAAT+TGG | 0.376707 | 2.2:+8504107 | MS.gene043478:CDS |
| TTCAAGGAGGCCACATTGTA+AGG | 0.379947 | 2.2:+8503507 | MS.gene043478:CDS |
| GAATGAAACCTGAATGGTTA+TGG | 0.404262 | 2.2:-8503874 | None:intergenic |
| GCAGAACAATCAGAATCTTC+TGG | 0.415389 | 2.2:+8503821 | MS.gene043478:CDS |
| AAGCTTCTATCTTTGGTAGC+AGG | 0.417259 | 2.2:+8504323 | MS.gene043478:CDS |
| TGCAGTAGAAACAAATGAAA+TGG | 0.417940 | 2.2:+8503790 | MS.gene043478:CDS |
| AGAAGAAGAGGATGGCCTTT+CGG | 0.418415 | 2.2:-8504422 | None:intergenic |
| AACAACTCAACACAGGATCT+TGG | 0.421186 | 2.2:+8503998 | MS.gene043478:CDS |
| TAATTAGCATCAAATCCAAC+AGG | 0.428411 | 2.2:-8504088 | None:intergenic |
| GCTACCAAAGATAGAAGCTT+GGG | 0.431520 | 2.2:-8504320 | None:intergenic |
| GGCCACATTGTAAGGGCAAC+AGG | 0.434632 | 2.2:+8503515 | MS.gene043478:CDS |
| GATTCACCAACAGAAGTTGT+TGG | 0.436409 | 2.2:-8503932 | None:intergenic |
| ACAGCTGATATGAATAGAAC+CGG | 0.440232 | 2.2:+8504133 | MS.gene043478:CDS |
| CATTTGAAGCTGAATTGTCT+TGG | 0.440619 | 2.2:-8504039 | None:intergenic |
| TTTCTGTCTGATGCTTTGAC+AGG | 0.443796 | 2.2:+8504346 | MS.gene043478:CDS |
| TCCACCGAGGCATCGGCAAT+TGG | 0.446878 | 2.2:-8504265 | None:intergenic |
| TTTCACCATCACTCCGTCCT+TGG | 0.447022 | 2.2:+8504233 | MS.gene043478:CDS |
| TAGAAAAGACAGACATAGTA+AGG | 0.449768 | 2.2:+8503538 | MS.gene043478:CDS |
| GTGATGAGAATTAGAAGAAG+AGG | 0.465335 | 2.2:-8504434 | None:intergenic |
| AACCTGAATGGTTATGGTTA+TGG | 0.467860 | 2.2:-8503868 | None:intergenic |
| GGAGAAATAGTTCAAGTTCA+AGG | 0.475915 | 2.2:+8503491 | MS.gene043478:CDS |
| GCATTTGGAATTGGATTCCA+TGG | 0.487862 | 2.2:-8503728 | None:intergenic |
| GACCGAGTAAAGCTGTTGAT+TGG | 0.496508 | 2.2:+8503657 | MS.gene043478:CDS |
| TTCTCTGGATCAAACCCTGT+TGG | 0.497035 | 2.2:+8504073 | MS.gene043478:CDS |
| TCGCCTACGTTTCTAGGCCA+AGG | 0.497569 | 2.2:+8504169 | MS.gene043478:CDS |
| TGCTACCAAAGATAGAAGCT+TGG | 0.514624 | 2.2:-8504321 | None:intergenic |
| TACGTTTCTAGGCCAAGGTT+CGG | 0.519680 | 2.2:+8504174 | MS.gene043478:CDS |
| TCCTCACCTTGAATTCTAGC+AGG | 0.529084 | 2.2:-8504379 | None:intergenic |
| ATGATGATCCACCGAGGCAT+CGG | 0.529513 | 2.2:-8504272 | None:intergenic |
| TTGATTGAATGAAACCTGAA+TGG | 0.548923 | 2.2:-8503880 | None:intergenic |
| GCCTTTCGGAACCAACTCCA+TGG | 0.555596 | 2.2:-8504408 | None:intergenic |
| AGCCAATCAACAGCTTTACT+CGG | 0.566559 | 2.2:-8503659 | None:intergenic |
| TATTCCAATTGCCGATGCCT+CGG | 0.573796 | 2.2:+8504261 | MS.gene043478:CDS |
| TCATTCCAAGGACGGAGTGA+TGG | 0.590778 | 2.2:-8504238 | None:intergenic |
| GAGGATGAGAGCCATGGAGT+TGG | 0.593361 | 2.2:+8504397 | MS.gene043478:CDS |
| TTAATGGGAATGAAGAGCAC+AGG | 0.595991 | 2.2:+8503467 | None:intergenic |
| TGCAACAGAAGAGTTACAAG+AGG | 0.599540 | 2.2:+8503748 | MS.gene043478:CDS |
| GCAATTGGAATATCATTCCA+AGG | 0.606871 | 2.2:-8504250 | None:intergenic |
| TCAAGGAGGCCACATTGTAA+GGG | 0.607094 | 2.2:+8503508 | MS.gene043478:CDS |
| TACCTGTTGCCCTTACAATG+TGG | 0.607186 | 2.2:-8503517 | None:intergenic |
| GCCATGGAGTTGGTTCCGAA+AGG | 0.607349 | 2.2:+8504407 | MS.gene043478:CDS |
| TCCAATTGCCGATGCCTCGG+TGG | 0.612323 | 2.2:+8504264 | MS.gene043478:CDS |
| TATGATGTTCAAGACCGTCT+CGG | 0.615712 | 2.2:+8503626 | MS.gene043478:CDS |
| ATGGGAATGAAGAGCACAGG+AGG | 0.615936 | 2.2:+8503470 | MS.gene043478:CDS |
| AATCGAACACGTCGATCACG+AGG | 0.616513 | 2.2:-8503578 | None:intergenic |
| TTGGAATATCATTCCAAGGA+CGG | 0.624073 | 2.2:-8504246 | None:intergenic |
| TCGGTCTGTCGTAGCCGAGA+CGG | 0.625231 | 2.2:-8503640 | None:intergenic |
| AGTAAGGTATACACTGCGAA+AGG | 0.629171 | 2.2:+8503554 | MS.gene043478:CDS |
| CAAGGTGAGGATGAGAGCCA+TGG | 0.637843 | 2.2:+8504391 | MS.gene043478:CDS |
| TCCTGCTAGAATTCAAGGTG+AGG | 0.647750 | 2.2:+8504378 | MS.gene043478:CDS |
| CAGCTGATATGAATAGAACC+GGG | 0.655461 | 2.2:+8504134 | MS.gene043478:CDS |
| AAGAACAAACAACTCAACAC+AGG | 0.662739 | 2.2:+8503991 | MS.gene043478:CDS |
| AATTAGCATCAAATCCAACA+GGG | 0.667862 | 2.2:-8504087 | None:intergenic |
| TGAGAATTAGAAGAAGAGGA+TGG | 0.669324 | 2.2:-8504430 | None:intergenic |
| CTACCAAAGATAGAAGCTTG+GGG | 0.680977 | 2.2:-8504319 | None:intergenic |
| AACTTGATCAGCTTCCACCA+TGG | 0.681586 | 2.2:+8503711 | MS.gene043478:CDS |
| GAACCTTGGCCTAGAAACGT+AGG | 0.688833 | 2.2:-8504172 | None:intergenic |
| AGGCGAATTAACCATAAACC+CGG | 0.693859 | 2.2:-8504152 | None:intergenic |
| TTTGGAATTGGATTCCATGG+TGG | 0.696350 | 2.2:-8503725 | None:intergenic |
| GAAATAGTTCAAGTTCAAGG+AGG | 0.712935 | 2.2:+8503494 | MS.gene043478:CDS |
| GTGATTATGATGATCCACCG+AGG | 0.797740 | 2.2:-8504278 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATTATAACAGGATTGTGAAT+TGG | + | chr2.2:8504107-8504126 | MS.gene043478:CDS | 25.0% |
| ! | GATTTGATGCTAATTATAAC+AGG | + | chr2.2:8504095-8504114 | MS.gene043478:CDS | 25.0% |
| AATTAGCATCAAATCCAACA+GGG | - | chr2.2:8504090-8504109 | None:intergenic | 30.0% | |
| TAATTAGCATCAAATCCAAC+AGG | - | chr2.2:8504091-8504110 | None:intergenic | 30.0% | |
| TAGAAAAGACAGACATAGTA+AGG | + | chr2.2:8503538-8503557 | MS.gene043478:CDS | 30.0% | |
| TGCAGTAGAAACAAATGAAA+TGG | + | chr2.2:8503790-8503809 | MS.gene043478:CDS | 30.0% | |
| TTGATTGAATGAAACCTGAA+TGG | - | chr2.2:8503883-8503902 | None:intergenic | 30.0% | |
| ! | AATGATCAAACACTTTTCTC+TGG | + | chr2.2:8504058-8504077 | MS.gene043478:CDS | 30.0% |
| !!! | TTTTTTCCAACAACTTCTGT+TGG | + | chr2.2:8503926-8503945 | MS.gene043478:CDS | 30.0% |
| AACCTGAATGGTTATGGTTA+TGG | - | chr2.2:8503871-8503890 | None:intergenic | 35.0% | |
| AAGAACAAACAACTCAACAC+AGG | + | chr2.2:8503991-8504010 | MS.gene043478:CDS | 35.0% | |
| ACAGCTGATATGAATAGAAC+CGG | + | chr2.2:8504133-8504152 | MS.gene043478:CDS | 35.0% | |
| GAATGAAACCTGAATGGTTA+TGG | - | chr2.2:8503877-8503896 | None:intergenic | 35.0% | |
| GCAATTGGAATATCATTCCA+AGG | - | chr2.2:8504253-8504272 | None:intergenic | 35.0% | |
| GTGATGAGAATTAGAAGAAG+AGG | - | chr2.2:8504437-8504456 | None:intergenic | 35.0% | |
| TATGAATAGAACCGGGTTTA+TGG | + | chr2.2:8504141-8504160 | MS.gene043478:CDS | 35.0% | |
| TGAGAATTAGAAGAAGAGGA+TGG | - | chr2.2:8504433-8504452 | None:intergenic | 35.0% | |
| TGTAACTCTTCTGTTGCATT+TGG | - | chr2.2:8503746-8503765 | None:intergenic | 35.0% | |
| TGTATTCCTGCTAGAATTCA+AGG | + | chr2.2:8504373-8504392 | MS.gene043478:CDS | 35.0% | |
| TTGGAATATCATTCCAAGGA+CGG | - | chr2.2:8504249-8504268 | None:intergenic | 35.0% | |
| ! | CATTTGAAGCTGAATTGTCT+TGG | - | chr2.2:8504042-8504061 | None:intergenic | 35.0% |
| ! | GAAATAGTTCAAGTTCAAGG+AGG | + | chr2.2:8503494-8503513 | MS.gene043478:CDS | 35.0% |
| ! | GGAGAAATAGTTCAAGTTCA+AGG | + | chr2.2:8503491-8503510 | MS.gene043478:CDS | 35.0% |
| ! | TCTTCTGTTGCATTTGGAAT+TGG | - | chr2.2:8503740-8503759 | None:intergenic | 35.0% |
| ! | TGTTGATTGGCTCATCAAAA+AGG | + | chr2.2:8503670-8503689 | MS.gene043478:CDS | 35.0% |
| AACAACTCAACACAGGATCT+TGG | + | chr2.2:8503998-8504017 | MS.gene043478:CDS | 40.0% | |
| AGCCAATCAACAGCTTTACT+CGG | - | chr2.2:8503662-8503681 | None:intergenic | 40.0% | |
| AGGCGAATTAACCATAAACC+CGG | - | chr2.2:8504155-8504174 | None:intergenic | 40.0% | |
| AGTAAGGTATACACTGCGAA+AGG | + | chr2.2:8503554-8503573 | MS.gene043478:CDS | 40.0% | |
| ATGGTGAAAAACTGGACTGA+AGG | - | chr2.2:8504222-8504241 | None:intergenic | 40.0% | |
| ATTCCCCAAGCTTCTATCTT+TGG | + | chr2.2:8504316-8504335 | MS.gene043478:CDS | 40.0% | |
| CACCATAACCATAACCATTC+AGG | + | chr2.2:8503866-8503885 | MS.gene043478:CDS | 40.0% | |
| CAGCTGATATGAATAGAACC+GGG | + | chr2.2:8504134-8504153 | MS.gene043478:CDS | 40.0% | |
| CTACCAAAGATAGAAGCTTG+GGG | - | chr2.2:8504322-8504341 | None:intergenic | 40.0% | |
| GATTCACCAACAGAAGTTGT+TGG | - | chr2.2:8503935-8503954 | None:intergenic | 40.0% | |
| GCAGAACAATCAGAATCTTC+TGG | + | chr2.2:8503821-8503840 | MS.gene043478:CDS | 40.0% | |
| GCTACCAAAGATAGAAGCTT+GGG | - | chr2.2:8504323-8504342 | None:intergenic | 40.0% | |
| GTTAATTCGCCTACGTTTCT+AGG | + | chr2.2:8504163-8504182 | MS.gene043478:CDS | 40.0% | |
| TATGATGTTCAAGACCGTCT+CGG | + | chr2.2:8503626-8503645 | MS.gene043478:CDS | 40.0% | |
| TGCAACAGAAGAGTTACAAG+AGG | + | chr2.2:8503748-8503767 | MS.gene043478:CDS | 40.0% | |
| TGCTACCAAAGATAGAAGCT+TGG | - | chr2.2:8504324-8504343 | None:intergenic | 40.0% | |
| TGGTGAAAAACTGGACTGAA+GGG | - | chr2.2:8504221-8504240 | None:intergenic | 40.0% | |
| TTTCTGTCTGATGCTTTGAC+AGG | + | chr2.2:8504346-8504365 | MS.gene043478:CDS | 40.0% | |
| ! | AAGCTTCTATCTTTGGTAGC+AGG | + | chr2.2:8504323-8504342 | MS.gene043478:CDS | 40.0% |
| ! | GCATTTGGAATTGGATTCCA+TGG | - | chr2.2:8503731-8503750 | None:intergenic | 40.0% |
| ! | TTTGGAATTGGATTCCATGG+TGG | - | chr2.2:8503728-8503747 | None:intergenic | 40.0% |
| AACTTGATCAGCTTCCACCA+TGG | + | chr2.2:8503711-8503730 | MS.gene043478:CDS | 45.0% | |
| AGAAGAAGAGGATGGCCTTT+CGG | - | chr2.2:8504425-8504444 | None:intergenic | 45.0% | |
| GACCGAGTAAAGCTGTTGAT+TGG | + | chr2.2:8503657-8503676 | MS.gene043478:CDS | 45.0% | |
| GTGATTATGATGATCCACCG+AGG | - | chr2.2:8504281-8504300 | None:intergenic | 45.0% | |
| TACCTGTTGCCCTTACAATG+TGG | - | chr2.2:8503520-8503539 | None:intergenic | 45.0% | |
| TATTCCAATTGCCGATGCCT+CGG | + | chr2.2:8504261-8504280 | MS.gene043478:CDS | 45.0% | |
| TCAAGGAGGCCACATTGTAA+GGG | + | chr2.2:8503508-8503527 | MS.gene043478:CDS | 45.0% | |
| TCCTCACCTTGAATTCTAGC+AGG | - | chr2.2:8504382-8504401 | None:intergenic | 45.0% | |
| TCCTGCTAGAATTCAAGGTG+AGG | + | chr2.2:8504378-8504397 | MS.gene043478:CDS | 45.0% | |
| TTCAAGGAGGCCACATTGTA+AGG | + | chr2.2:8503507-8503526 | MS.gene043478:CDS | 45.0% | |
| TTCTCTGGATCAAACCCTGT+TGG | + | chr2.2:8504073-8504092 | MS.gene043478:CDS | 45.0% | |
| ! | ACGGAGTGATGGTGAAAAAC+TGG | - | chr2.2:8504230-8504249 | None:intergenic | 45.0% |
| ! | TACGTTTCTAGGCCAAGGTT+CGG | + | chr2.2:8504174-8504193 | MS.gene043478:CDS | 45.0% |
| AATCGAACACGTCGATCACG+AGG | - | chr2.2:8503581-8503600 | None:intergenic | 50.0% | |
| ATGATGATCCACCGAGGCAT+CGG | - | chr2.2:8504275-8504294 | None:intergenic | 50.0% | |
| GAACCTTGGCCTAGAAACGT+AGG | - | chr2.2:8504175-8504194 | None:intergenic | 50.0% | |
| TCATTCCAAGGACGGAGTGA+TGG | - | chr2.2:8504241-8504260 | None:intergenic | 50.0% | |
| TTTCACCATCACTCCGTCCT+TGG | + | chr2.2:8504233-8504252 | MS.gene043478:CDS | 50.0% | |
| ! | ATGGGAATGAAGAGCACAGG+AGG | + | chr2.2:8503470-8503489 | MS.gene043478:CDS | 50.0% |
| !! | TTCGGCTTTTTCCGCCCATA+GGG | + | chr2.2:8504192-8504211 | MS.gene043478:CDS | 50.0% |
| CAAGGTGAGGATGAGAGCCA+TGG | + | chr2.2:8504391-8504410 | MS.gene043478:CDS | 55.0% | |
| GAGGATGAGAGCCATGGAGT+TGG | + | chr2.2:8504397-8504416 | MS.gene043478:CDS | 55.0% | |
| GCCTTTCGGAACCAACTCCA+TGG | - | chr2.2:8504411-8504430 | None:intergenic | 55.0% | |
| GGCCACATTGTAAGGGCAAC+AGG | + | chr2.2:8503515-8503534 | MS.gene043478:CDS | 55.0% | |
| ! | GCCATGGAGTTGGTTCCGAA+AGG | + | chr2.2:8504407-8504426 | MS.gene043478:CDS | 55.0% |
| ! | TCGCCTACGTTTCTAGGCCA+AGG | + | chr2.2:8504169-8504188 | MS.gene043478:CDS | 55.0% |
| !! | GTTCGGCTTTTTCCGCCCAT+AGG | + | chr2.2:8504191-8504210 | MS.gene043478:CDS | 55.0% |
| !! | TCGGCTTTTTCCGCCCATAG+GGG | + | chr2.2:8504193-8504212 | MS.gene043478:CDS | 55.0% |
| GGACTGAAGGGTCCCCCTAT+GGG | - | chr2.2:8504209-8504228 | None:intergenic | 60.0% | |
| GGGCGGAAAAAGCCGAACCT+TGG | - | chr2.2:8504189-8504208 | None:intergenic | 60.0% | |
| TCCAATTGCCGATGCCTCGG+TGG | + | chr2.2:8504264-8504283 | MS.gene043478:CDS | 60.0% | |
| TCGGTCTGTCGTAGCCGAGA+CGG | - | chr2.2:8503643-8503662 | None:intergenic | 60.0% | |
| TGGACTGAAGGGTCCCCCTA+TGG | - | chr2.2:8504210-8504229 | None:intergenic | 60.0% | |
| !! | CGGCTTTTTCCGCCCATAGG+GGG | + | chr2.2:8504194-8504213 | MS.gene043478:CDS | 60.0% |
| !! | TCCACCGAGGCATCGGCAAT+TGG | - | chr2.2:8504268-8504287 | None:intergenic | 60.0% |
| CTGAAGGGTCCCCCTATGGG+CGG | - | chr2.2:8504206-8504225 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 8503470 | 8504459 | 8503470 | ID=MS.gene043478 |
| chr2.2 | mRNA | 8503470 | 8504459 | 8503470 | ID=MS.gene043478.t1;Parent=MS.gene043478 |
| chr2.2 | exon | 8503470 | 8504459 | 8503470 | ID=MS.gene043478.t1.exon1;Parent=MS.gene043478.t1 |
| chr2.2 | CDS | 8503470 | 8504459 | 8503470 | ID=cds.MS.gene043478.t1;Parent=MS.gene043478.t1 |
| Gene Sequence |
| Protein sequence |