AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043557

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043557.t1 MTR_2g093220 97.880 283 6 0 1 283 11 293 0.0 577
MS.gene043557.t1 MTR_4g461080 54.902 306 83 15 3 283 2 277 2.26e-80 244
MS.gene043557.t1 MTR_3g091820 85.294 68 10 0 19 86 32 99 5.78e-38 136
MS.gene043557.t1 MTR_1g077600 75.000 72 18 0 13 84 26 97 1.30e-35 129
MS.gene043557.t1 MTR_1g077600 75.000 72 18 0 13 84 26 97 1.67e-35 129
MS.gene043557.t1 MTR_8g027295 62.000 100 23 3 13 107 9 98 6.65e-35 127
MS.gene043557.t1 MTR_3g090430 67.470 83 27 0 14 96 35 117 1.39e-33 125
MS.gene043557.t1 MTR_3g077750 52.206 136 51 5 1 131 29 155 1.97e-33 125
MS.gene043557.t1 MTR_4g063780 70.370 81 20 1 24 100 69 149 3.16e-33 124
MS.gene043557.t1 MTR_2g096740 53.704 108 40 2 3 110 36 133 1.34e-32 121
MS.gene043557.t1 MTR_2g096740 53.704 108 40 2 3 110 51 148 1.79e-32 121
MS.gene043557.t1 MTR_4g022370 51.587 126 38 3 1 117 66 177 1.95e-32 122
MS.gene043557.t1 MTR_1g056810 71.831 71 20 0 31 101 13 83 1.05e-30 116
MS.gene043557.t1 MTR_8g479350 82.456 57 10 0 27 83 65 121 3.10e-30 116
MS.gene043557.t1 MTR_8g068210 59.091 88 35 1 19 106 21 107 3.92e-30 116
MS.gene043557.t1 MTR_4g088580 70.833 72 20 1 32 103 57 127 8.68e-30 116
MS.gene043557.t1 MTR_5g031440 83.636 55 9 0 26 80 39 93 1.09e-29 115
MS.gene043557.t1 MTR_7g059400 77.049 61 14 0 24 84 70 130 2.47e-29 114
MS.gene043557.t1 MTR_8g079060 67.568 74 23 1 14 86 12 85 3.32e-29 111
MS.gene043557.t1 MTR_2g014060 79.310 58 9 1 24 81 22 76 1.13e-28 112
MS.gene043557.t1 MTR_7g024670 75.758 66 15 1 29 93 76 141 1.32e-27 110
MS.gene043557.t1 MTR_8g015840 68.056 72 22 1 18 88 8 79 3.56e-27 105
MS.gene043557.t1 MTR_4g109980 79.245 53 11 0 28 80 38 90 6.68e-27 107
MS.gene043557.t1 MTR_3g435480 65.753 73 24 1 16 88 123 194 1.15e-26 108
MS.gene043557.t1 MTR_2g013370 77.193 57 12 1 28 84 44 99 1.22e-26 105
MS.gene043557.t1 MTR_4g089095 78.947 57 11 1 28 84 48 103 1.63e-26 105
MS.gene043557.t1 MTR_2g059540 86.000 50 7 0 29 78 30 79 2.16e-26 103
MS.gene043557.t1 MTR_4g089095 78.947 57 11 1 28 84 14 69 2.16e-26 104
MS.gene043557.t1 MTR_5g041420 61.842 76 28 1 18 93 127 201 3.49e-26 105
MS.gene043557.t1 MTR_7g010950 58.333 84 27 1 11 86 108 191 3.90e-26 107
MS.gene043557.t1 MTR_2g014170 84.000 50 8 0 29 78 44 93 5.31e-26 104
MS.gene043557.t1 MTR_4g082060 54.217 83 35 1 1 83 96 175 2.94e-25 104
MS.gene043557.t1 MTR_8g044220 63.934 61 22 0 25 85 113 173 9.06e-25 103
MS.gene043557.t1 MTR_6g012450 66.129 62 21 0 25 86 131 192 1.70e-24 102
MS.gene043557.t1 MTR_6g027450 51.250 80 38 1 5 84 65 143 2.19e-24 100
MS.gene043557.t1 MTR_7g086780 66.102 59 20 0 25 83 94 152 2.84e-24 101
MS.gene043557.t1 MTR_6g027460 54.430 79 35 1 5 83 72 149 3.89e-24 100
MS.gene043557.t1 MTR_2g016030 68.421 57 18 0 27 83 44 100 1.65e-23 94.4
MS.gene043557.t1 MTR_5g041400 58.442 77 32 0 26 102 115 191 8.20e-23 96.7
MS.gene043557.t1 MTR_5g041380 51.111 90 43 1 3 92 101 189 1.28e-22 96.3
MS.gene043557.t1 MTR_5g041530 60.606 66 25 1 18 83 129 193 3.47e-21 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043557.t1 AT2G28510 44.689 273 104 13 28 283 46 288 2.77e-47 160
MS.gene043557.t1 AT5G60200 37.262 263 88 9 21 268 47 247 1.39e-42 147
MS.gene043557.t1 AT3G45610 33.562 292 112 10 1 268 1 234 1.41e-37 133
MS.gene043557.t1 AT4G24060 75.610 82 20 0 19 100 42 123 5.36e-36 132
MS.gene043557.t1 AT3G61850 69.767 86 19 2 23 107 55 134 5.94e-35 127
MS.gene043557.t1 AT3G61850 69.767 86 19 2 23 107 55 134 5.94e-35 127
MS.gene043557.t1 AT3G61850 69.767 86 19 2 23 107 67 146 7.08e-35 127
MS.gene043557.t1 AT3G61850 69.767 86 19 2 23 107 55 134 1.05e-34 127
MS.gene043557.t1 AT3G61850 69.767 86 19 2 23 107 67 146 1.21e-34 127
MS.gene043557.t1 AT3G55370 66.304 92 25 2 2 92 97 183 1.44e-34 128
MS.gene043557.t1 AT3G55370 66.304 92 25 2 2 92 52 138 1.47e-34 127
MS.gene043557.t1 AT3G55370 66.304 92 25 2 2 92 52 138 2.08e-34 128
MS.gene043557.t1 AT5G60850 73.684 76 16 1 28 99 49 124 2.66e-32 121
MS.gene043557.t1 AT5G02460 71.233 73 21 0 12 84 77 149 3.17e-32 123
MS.gene043557.t1 AT2G37590 81.667 60 11 0 26 85 85 144 4.06e-32 121
MS.gene043557.t1 AT1G64620 46.154 182 82 4 19 189 38 214 5.76e-32 121
MS.gene043557.t1 AT5G65590 66.265 83 24 1 13 91 20 102 3.23e-31 118
MS.gene043557.t1 AT3G52440 75.000 68 17 0 27 94 22 89 3.78e-31 116
MS.gene043557.t1 AT3G52440 75.000 68 17 0 27 94 41 108 4.49e-31 117
MS.gene043557.t1 AT2G46590 61.345 119 39 4 19 133 59 174 2.08e-30 117
MS.gene043557.t1 AT1G51700 55.789 95 39 1 10 104 16 107 2.10e-30 113
MS.gene043557.t1 AT2G46590 61.345 119 39 4 19 133 71 186 2.32e-30 117
MS.gene043557.t1 AT4G00940 80.000 60 12 0 25 84 63 122 6.38e-30 114
MS.gene043557.t1 AT4G00940 80.000 60 12 0 25 84 63 122 6.38e-30 114
MS.gene043557.t1 AT4G00940 80.000 60 12 0 25 84 63 122 6.38e-30 114
MS.gene043557.t1 AT1G07640 57.647 85 35 1 1 84 47 131 7.96e-30 115
MS.gene043557.t1 AT1G07640 57.647 85 35 1 1 84 55 139 1.05e-29 115
MS.gene043557.t1 AT2G28810 80.357 56 11 0 26 81 73 128 1.32e-29 114
MS.gene043557.t1 AT1G21340 82.456 57 10 0 29 85 37 93 1.71e-29 112
MS.gene043557.t1 AT2G28810 80.357 56 11 0 26 81 90 145 1.98e-29 114
MS.gene043557.t1 AT1G07640 65.333 75 25 1 11 84 1 75 3.10e-29 112
MS.gene043557.t1 AT5G62940 75.410 61 15 0 20 80 63 123 5.95e-29 113
MS.gene043557.t1 AT4G21050 55.556 90 40 0 7 96 1 90 2.13e-28 108
MS.gene043557.t1 AT1G28310 81.818 55 10 0 30 84 27 81 7.02e-28 109
MS.gene043557.t1 AT5G66940 67.105 76 23 2 22 96 25 99 8.56e-28 107
MS.gene043557.t1 AT1G28310 81.818 55 10 0 30 84 51 105 1.07e-27 109
MS.gene043557.t1 AT3G21270 84.906 53 8 0 30 82 29 81 2.21e-27 105
MS.gene043557.t1 AT4G38000 62.857 70 25 1 15 83 26 95 5.04e-27 105
MS.gene043557.t1 AT1G47655 77.193 57 13 0 22 78 21 77 1.15e-26 103
MS.gene043557.t1 AT5G62430 57.895 76 32 0 14 89 38 113 1.61e-26 105
MS.gene043557.t1 AT3G50410 66.154 65 22 0 22 86 22 86 2.62e-26 104
MS.gene043557.t1 AT5G39660 62.821 78 23 2 12 89 124 195 1.58e-25 105
MS.gene043557.t1 AT5G39660 62.821 78 23 2 12 89 124 195 1.58e-25 105
MS.gene043557.t1 AT5G39660 62.821 78 23 2 12 89 124 195 1.58e-25 105
MS.gene043557.t1 AT3G47500 69.355 62 19 0 25 86 105 166 2.10e-25 105
MS.gene043557.t1 AT1G26790 55.405 74 33 0 10 83 91 164 1.09e-24 102
MS.gene043557.t1 AT1G69570 67.797 59 19 0 25 83 127 185 2.65e-24 101
MS.gene043557.t1 AT2G34140 64.407 59 21 0 25 83 53 111 7.71e-24 95.5
MS.gene043557.t1 AT4G21080 56.250 80 34 1 32 111 27 105 9.85e-24 97.1
MS.gene043557.t1 AT1G29160 64.407 59 21 0 25 83 57 115 1.43e-23 94.7
MS.gene043557.t1 AT4G21040 56.250 80 34 1 32 111 27 105 1.25e-22 94.0
MS.gene043557.t1 AT4G21030 41.176 102 57 1 7 108 1 99 1.03e-16 77.0

Find 69 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTAAACCATGGATTTA+TGG 0.140552 2.2:-7623664 MS.gene043557:CDS
GCTTGTTCTGGTTGAGGTTT+TGG 0.170758 2.2:+7624071 None:intergenic
ATCCATAAATCCATGGTTTA+AGG 0.182491 2.2:+7623662 None:intergenic
ATTCCTTAGGGTTCCTCCTT+TGG 0.285324 2.2:+7623941 None:intergenic
GTTTCAAATCTAGGAAATTC+AGG 0.292607 2.2:-7623702 MS.gene043557:CDS
ATTAGAAGTGGATTATTTCT+TGG 0.296220 2.2:-7623636 MS.gene043557:CDS
GGACAGTTCAAAGCTTGTTC+TGG 0.303186 2.2:+7624059 None:intergenic
GAATGAGGGAGATTGTTAAA+TGG 0.311392 2.2:+7623816 None:intergenic
GCAAGACCAAGTTGGAATAA+TGG 0.324229 2.2:-7623351 MS.gene043557:CDS
AGTGGATTATTTCTTGGAAA+TGG 0.336042 2.2:-7623630 MS.gene043557:CDS
GGGTTTCCATGGCAGCTAAA+TGG 0.341098 2.2:-7623402 MS.gene043557:CDS
GTAAATCTTGCAGAAGGTAT+TGG 0.344052 2.2:-7623965 MS.gene043557:CDS
ATGTATGGTGTGTATGGAAA+TGG 0.354795 2.2:-7623579 MS.gene043557:CDS
GAACATGATGTTTCAAATCT+AGG 0.360530 2.2:-7623711 MS.gene043557:CDS
ATTGTTAATTTCTTGATCAT+AGG 0.377525 2.2:+7623482 None:intergenic
AAAGCAATCATGTGGACAAA+TGG 0.379363 2.2:-7623742 MS.gene043557:CDS
GTTGTTGTAGTAACAGAATT+TGG 0.394528 2.2:+7624016 None:intergenic
CAAGATTTACAGAAATATCT+TGG 0.397675 2.2:+7623978 None:intergenic
AATGAGGGAGATTGTTAAAT+GGG 0.410826 2.2:+7623817 None:intergenic
TCATCAATGGAAAACATGTT+AGG 0.412061 2.2:-7624122 MS.gene043557:CDS
TTTCTGCATCCACCACCAAC+TGG 0.423632 2.2:+7623915 None:intergenic
CACCAACTGGAACATTCCTT+AGG 0.426467 2.2:+7623928 None:intergenic
TTGTTAATTTCTTGATCATA+GGG 0.429595 2.2:+7623483 None:intergenic
CAGAATATGTATGGTGTGTA+TGG 0.444454 2.2:-7623585 MS.gene043557:CDS
TTCAAAGCTTGTTCTGGTTG+AGG 0.444926 2.2:+7624065 None:intergenic
TTGTTAAATGGGTTGAGATT+TGG 0.446377 2.2:+7623828 None:intergenic
TGTATGGTGTGTATGGAAAT+GGG 0.450678 2.2:-7623578 MS.gene043557:CDS
AAGCAATCATGTGGACAAAT+GGG 0.452916 2.2:-7623741 MS.gene043557:CDS
TAATGCTAATGCAAAATCAT+TGG 0.457564 2.2:+7623776 None:intergenic
GTGTTGGTTGAGTTGCATCT+TGG 0.458480 2.2:+7624038 None:intergenic
AATAATGTTCAGAATATGTA+TGG 0.460682 2.2:-7623594 MS.gene043557:CDS
GTTCCTCCATTTAGCTGCCA+TGG 0.475903 2.2:+7623396 None:intergenic
AATGTCAAGCCAATCATCAA+TGG 0.487207 2.2:-7624135 MS.gene043557:CDS
ATGCAAATAACAATGCTTGT+GGG 0.493320 2.2:-7623527 MS.gene043557:CDS
AATCATTCAACCTTAAACCA+TGG 0.503221 2.2:-7623672 MS.gene043557:CDS
TTTATGGATGCAATTAGAAG+TGG 0.515360 2.2:-7623648 MS.gene043557:CDS
GTAGTAACAGAATTTGGTGT+TGG 0.518689 2.2:+7624022 None:intergenic
CTAAGGAATGTTCCAGTTGG+TGG 0.519598 2.2:-7623927 MS.gene043557:CDS
GACAATGGTGAAGTAAATAG+TGG 0.531502 2.2:-7623555 MS.gene043557:CDS
TAATTGCATCCATAAATCCA+TGG 0.534717 2.2:+7623655 None:intergenic
GTTTCACATCTCCTTGGCAA+GGG 0.535336 2.2:-7623329 MS.gene043557:CDS
ACCAACTGGAACATTCCTTA+GGG 0.535614 2.2:+7623929 None:intergenic
GGTTTCACATCTCCTTGGCA+AGG 0.542507 2.2:-7623330 MS.gene043557:CDS
ATAATGGTTTCACATCTCCT+TGG 0.549531 2.2:-7623335 MS.gene043557:CDS
TATGATCATAAGATGAATGA+GGG 0.553710 2.2:+7623802 None:intergenic
GTGAAACCATTATTCCAACT+TGG 0.559949 2.2:+7623345 None:intergenic
AGCAAGAAATGTGCAGTGGA+AGG 0.565157 2.2:-7623455 MS.gene043557:CDS
TTATGATCATAAGATGAATG+AGG 0.565287 2.2:+7623801 None:intergenic
AATGCAAATAACAATGCTTG+TGG 0.566142 2.2:-7623528 MS.gene043557:CDS
AGGAATGTTCCAGTTGGTGG+TGG 0.567104 2.2:-7623924 MS.gene043557:CDS
TTGAATCTGCAAGACCAAGT+TGG 0.568555 2.2:-7623359 MS.gene043557:CDS
TGCAGAAGGTATTGGACCAA+AGG 0.572877 2.2:-7623957 MS.gene043557:CDS
TGCAAATAACAATGCTTGTG+GGG 0.582187 2.2:-7623526 MS.gene043557:CDS
CATCATCATCATCTTCAAAG+AGG 0.582519 2.2:-7623872 MS.gene043557:CDS
ATCATCATCATCTTCAAAGA+GGG 0.591464 2.2:-7623871 MS.gene043557:CDS
ACCCTAAGGAATGTTCCAGT+TGG 0.592955 2.2:-7623930 MS.gene043557:CDS
TTTGAAGATGATGATGATGA+TGG 0.593517 2.2:+7623876 None:intergenic
GGACCAAAGGAGGAACCCTA+AGG 0.594931 2.2:-7623944 MS.gene043557:CDS
ATTTCTGTAAATCTTGCAGA+AGG 0.595509 2.2:-7623971 MS.gene043557:CDS
GCAAGAAATGTGCAGTGGAA+GGG 0.598256 2.2:-7623454 MS.gene043557:CDS
GTGTATGGAAATGGGGACAA+TGG 0.598902 2.2:-7623570 MS.gene043557:CDS
GCTAAATGGAGGAACAAACA+TGG 0.611119 2.2:-7623388 MS.gene043557:CDS
CTATGAAGAAGCCCTTGCCA+AGG 0.626241 2.2:+7623318 None:intergenic
GTATGGTGTGTATGGAAATG+GGG 0.629075 2.2:-7623577 MS.gene043557:CDS
AGAAGGTATTGGACCAAAGG+AGG 0.630398 2.2:-7623954 MS.gene043557:CDS
AGGCTTCAAAAGCAATCATG+TGG 0.635965 2.2:-7623750 MS.gene043557:CDS
TTTCCATGGCAGCTAAATGG+AGG 0.645564 2.2:-7623399 MS.gene043557:CDS
CTAAATGGAGGAACAAACAT+GGG 0.651200 2.2:-7623387 MS.gene043557:CDS
GTGAAGCAAGAAATGTGCAG+TGG 0.683660 2.2:-7623459 MS.gene043557:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATGTTCAGAATATGTA+TGG - chr2.2:7623845-7623864 MS.gene043557:CDS 20.0%
!! ATTGTTAATTTCTTGATCAT+AGG + chr2.2:7623960-7623979 None:intergenic 20.0%
!! TTGTTAATTTCTTGATCATA+GGG + chr2.2:7623959-7623978 None:intergenic 20.0%
!!! ATTAGTGAAAGTAAAGTTTT+TGG - chr2.2:7624013-7624032 MS.gene043557:CDS 20.0%
! CAAGATTTACAGAAATATCT+TGG + chr2.2:7623464-7623483 None:intergenic 25.0%
! TAATGCTAATGCAAAATCAT+TGG + chr2.2:7623666-7623685 None:intergenic 25.0%
! TATGATCATAAGATGAATGA+GGG + chr2.2:7623640-7623659 None:intergenic 25.0%
! TTATGATCATAAGATGAATG+AGG + chr2.2:7623641-7623660 None:intergenic 25.0%
!!! ATTAGAAGTGGATTATTTCT+TGG - chr2.2:7623803-7623822 MS.gene043557:CDS 25.0%
AACCTTAAACCATGGATTTA+TGG - chr2.2:7623775-7623794 MS.gene043557:CDS 30.0%
AATCATTCAACCTTAAACCA+TGG - chr2.2:7623767-7623786 MS.gene043557:CDS 30.0%
AATGAGGGAGATTGTTAAAT+GGG + chr2.2:7623625-7623644 None:intergenic 30.0%
AATGCAAATAACAATGCTTG+TGG - chr2.2:7623911-7623930 MS.gene043557:CDS 30.0%
ATCATCATCATCTTCAAAGA+GGG - chr2.2:7623568-7623587 MS.gene043557:CDS 30.0%
ATCCATAAATCCATGGTTTA+AGG + chr2.2:7623780-7623799 None:intergenic 30.0%
ATGCAAATAACAATGCTTGT+GGG - chr2.2:7623912-7623931 MS.gene043557:CDS 30.0%
ATTTCTGTAAATCTTGCAGA+AGG - chr2.2:7623468-7623487 MS.gene043557:CDS 30.0%
GAACATGATGTTTCAAATCT+AGG - chr2.2:7623728-7623747 MS.gene043557:CDS 30.0%
GTTGTTGTAGTAACAGAATT+TGG + chr2.2:7623426-7623445 None:intergenic 30.0%
GTTTCAAATCTAGGAAATTC+AGG - chr2.2:7623737-7623756 MS.gene043557:CDS 30.0%
TAATTGCATCCATAAATCCA+TGG + chr2.2:7623787-7623806 None:intergenic 30.0%
TCATCAATGGAAAACATGTT+AGG - chr2.2:7623317-7623336 MS.gene043557:CDS 30.0%
TTTATGGATGCAATTAGAAG+TGG - chr2.2:7623791-7623810 MS.gene043557:CDS 30.0%
! ATTTTGCATTAGCATTAGCT+AGG - chr2.2:7623669-7623688 MS.gene043557:CDS 30.0%
! TTTGAAGATGATGATGATGA+TGG + chr2.2:7623566-7623585 None:intergenic 30.0%
!! ACATGTTTTCCATTGATGAT+TGG + chr2.2:7623316-7623335 None:intergenic 30.0%
!! AGTGAAAGTAAAGTTTTTGG+TGG - chr2.2:7624016-7624035 MS.gene043557:CDS 30.0%
!! AGTGGATTATTTCTTGGAAA+TGG - chr2.2:7623809-7623828 MS.gene043557:CDS 30.0%
!! TTGTTAAATGGGTTGAGATT+TGG + chr2.2:7623614-7623633 None:intergenic 30.0%
!!! GTGAAAGTAAAGTTTTTGGT+GGG - chr2.2:7624017-7624036 MS.gene043557:CDS 30.0%
AAAGCAATCATGTGGACAAA+TGG - chr2.2:7623697-7623716 MS.gene043557:CDS 35.0%
AAGCAATCATGTGGACAAAT+GGG - chr2.2:7623698-7623717 MS.gene043557:CDS 35.0%
ATAATGGTTTCACATCTCCT+TGG - chr2.2:7624104-7624123 MS.gene043557:CDS 35.0%
ATGTATGGTGTGTATGGAAA+TGG - chr2.2:7623860-7623879 MS.gene043557:CDS 35.0%
CAGAATATGTATGGTGTGTA+TGG - chr2.2:7623854-7623873 MS.gene043557:CDS 35.0%
CATCATCATCATCTTCAAAG+AGG - chr2.2:7623567-7623586 MS.gene043557:CDS 35.0%
CTAAATGGAGGAACAAACAT+GGG - chr2.2:7624052-7624071 MS.gene043557:CDS 35.0%
GAATGAGGGAGATTGTTAAA+TGG + chr2.2:7623626-7623645 None:intergenic 35.0%
GACAATGGTGAAGTAAATAG+TGG - chr2.2:7623884-7623903 MS.gene043557:CDS 35.0%
GTGAAACCATTATTCCAACT+TGG + chr2.2:7624097-7624116 None:intergenic 35.0%
TGCAAATAACAATGCTTGTG+GGG - chr2.2:7623913-7623932 MS.gene043557:CDS 35.0%
TGTATGGTGTGTATGGAAAT+GGG - chr2.2:7623861-7623880 MS.gene043557:CDS 35.0%
! GTAAATCTTGCAGAAGGTAT+TGG - chr2.2:7623474-7623493 MS.gene043557:CDS 35.0%
!! GTAGTAACAGAATTTGGTGT+TGG + chr2.2:7623420-7623439 None:intergenic 35.0%
ACCAACTGGAACATTCCTTA+GGG + chr2.2:7623513-7623532 None:intergenic 40.0%
AGGCTTCAAAAGCAATCATG+TGG - chr2.2:7623689-7623708 MS.gene043557:CDS 40.0%
GCTAAATGGAGGAACAAACA+TGG - chr2.2:7624051-7624070 MS.gene043557:CDS 40.0%
GTATGGTGTGTATGGAAATG+GGG - chr2.2:7623862-7623881 MS.gene043557:CDS 40.0%
TTGAATCTGCAAGACCAAGT+TGG - chr2.2:7624080-7624099 MS.gene043557:CDS 40.0%
! GCAAGACCAAGTTGGAATAA+TGG - chr2.2:7624088-7624107 MS.gene043557:CDS 40.0%
! TTCAAAGCTTGTTCTGGTTG+AGG + chr2.2:7623377-7623396 None:intergenic 40.0%
!!! AAGTTTTTGGTGGGTTTCCA+TGG - chr2.2:7624026-7624045 MS.gene043557:CDS 40.0%
ACCCTAAGGAATGTTCCAGT+TGG - chr2.2:7623509-7623528 MS.gene043557:CDS 45.0%
AGCAAGAAATGTGCAGTGGA+AGG - chr2.2:7623984-7624003 MS.gene043557:CDS 45.0%
ATTCCTTAGGGTTCCTCCTT+TGG + chr2.2:7623501-7623520 None:intergenic 45.0%
CACCAACTGGAACATTCCTT+AGG + chr2.2:7623514-7623533 None:intergenic 45.0%
CTAAGGAATGTTCCAGTTGG+TGG - chr2.2:7623512-7623531 MS.gene043557:CDS 45.0%
GCAAGAAATGTGCAGTGGAA+GGG - chr2.2:7623985-7624004 MS.gene043557:CDS 45.0%
GTGAAGCAAGAAATGTGCAG+TGG - chr2.2:7623980-7623999 MS.gene043557:CDS 45.0%
GTGTATGGAAATGGGGACAA+TGG - chr2.2:7623869-7623888 MS.gene043557:CDS 45.0%
GTTTCACATCTCCTTGGCAA+GGG - chr2.2:7624110-7624129 MS.gene043557:CDS 45.0%
TTTCCATGGCAGCTAAATGG+AGG - chr2.2:7624040-7624059 MS.gene043557:CDS 45.0%
! GGACAGTTCAAAGCTTGTTC+TGG + chr2.2:7623383-7623402 None:intergenic 45.0%
!! AGAAGGTATTGGACCAAAGG+AGG - chr2.2:7623485-7623504 MS.gene043557:CDS 45.0%
!! GCTTGTTCTGGTTGAGGTTT+TGG + chr2.2:7623371-7623390 None:intergenic 45.0%
!! GTGTTGGTTGAGTTGCATCT+TGG + chr2.2:7623404-7623423 None:intergenic 45.0%
!! TGCAGAAGGTATTGGACCAA+AGG - chr2.2:7623482-7623501 MS.gene043557:CDS 45.0%
CTATGAAGAAGCCCTTGCCA+AGG + chr2.2:7624124-7624143 None:intergenic 50.0%
GGGTTTCCATGGCAGCTAAA+TGG - chr2.2:7624037-7624056 MS.gene043557:CDS 50.0%
GGTTTCACATCTCCTTGGCA+AGG - chr2.2:7624109-7624128 MS.gene043557:CDS 50.0%
GTTCCTCCATTTAGCTGCCA+TGG + chr2.2:7624046-7624065 None:intergenic 50.0%
TTTCTGCATCCACCACCAAC+TGG + chr2.2:7623527-7623546 None:intergenic 50.0%
!! AGGAATGTTCCAGTTGGTGG+TGG - chr2.2:7623515-7623534 MS.gene043557:CDS 50.0%
GGACCAAAGGAGGAACCCTA+AGG - chr2.2:7623495-7623514 MS.gene043557:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 7623305 7624156 7623305 ID=MS.gene043557
chr2.2 mRNA 7623305 7624156 7623305 ID=MS.gene043557.t1;Parent=MS.gene043557
chr2.2 exon 7623305 7624156 7623305 ID=MS.gene043557.t1.exon1;Parent=MS.gene043557.t1
chr2.2 CDS 7623305 7624156 7623305 ID=cds.MS.gene043557.t1;Parent=MS.gene043557.t1
Gene Sequence

>MS.gene043557

ATGTCAAGCCAATCATCAATGGAAAACATGTTAGGTTGCTCAAAAGAAGAGCAAGAAAGAAAGCCAAAACCTCAACCAGAACAAGCTTTGAACTGTCCAAGATGCAACTCAACCAACACCAAATTCTGTTACTACAACAACTACAGTCTTACTCAGCCAAGATATTTCTGTAAATCTTGCAGAAGGTATTGGACCAAAGGAGGAACCCTAAGGAATGTTCCAGTTGGTGGTGGATGCAGAAAAAACAAAAGATCATCACCATCATCATCATCATCTTCAAAGAGGGTTCAAGATCAAACATTCACACCAAATCTCAACCCATTTAACAATCTCCCTCATTCATCTTATGATCATAATTCCAATGATTTTGCATTAGCATTAGCTAGGCTTCAAAAGCAATCATGTGGACAAATGGGTTATGATGAACATGATGTTTCAAATCTAGGAAATTCAGGTATGAACAATCATTCAACCTTAAACCATGGATTTATGGATGCAATTAGAAGTGGATTATTTCTTGGAAATGGACTACATTATAATAATAATGTTCAGAATATGTATGGTGTGTATGGAAATGGGGACAATGGTGAAGTAAATAGTGGCAACAATGCAAATAACAATGCTTGTGGGGTTAGTGAAGAAATGATGTTTCCCTATGATCAAGAAATTAACAATGTGAAGCAAGAAATGTGCAGTGGAAGGGAACAAATTAGTGAAAGTAAAGTTTTTGGTGGGTTTCCATGGCAGCTAAATGGAGGAACAAACATGGGTGAAGTTGAATCTGCAAGACCAAGTTGGAATAATGGTTTCACATCTCCTTGGCAAGGGCTTCTTCATAGTCCCTTAATGTAG
Protein sequence

>MS.gene043557.t1

MSSQSSMENMLGCSKEEQERKPKPQPEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSPSSSSSSKRVQDQTFTPNLNPFNNLPHSSYDHNSNDFALALARLQKQSCGQMGYDEHDVSNLGNSGMNNHSTLNHGFMDAIRSGLFLGNGLHYNNNVQNMYGVYGNGDNGEVNSGNNANNNACGVSEEMMFPYDQEINNVKQEMCSGREQISESKVFGGFPWQLNGGTNMGEVESARPSWNNGFTSPWQGLLHSPLM