AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043563

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043563.t1 MTR_2g093310 96.552 174 6 0 1 174 25 198 5.84e-126 352
MS.gene043563.t1 MTR_4g060950 77.326 172 36 3 5 174 20 190 7.63e-96 276
MS.gene043563.t1 MTR_1g095850 72.121 165 38 4 10 174 73 229 3.75e-78 232
MS.gene043563.t1 MTR_2g068760 69.027 113 35 0 4 116 8 120 1.01e-56 176
MS.gene043563.t1 MTR_4g083680 64.035 114 41 0 4 117 10 123 1.38e-52 166
MS.gene043563.t1 MTR_3g071590 54.000 150 63 2 8 151 7 156 6.31e-51 160
MS.gene043563.t1 MTR_5g083230 63.717 113 41 0 8 120 5 117 8.26e-51 160
MS.gene043563.t1 MTR_3g031660 62.385 109 41 0 8 116 6 114 1.60e-48 155
MS.gene043563.t1 MTR_6g005070 54.098 122 56 0 1 122 1 122 1.19e-44 144
MS.gene043563.t1 MTR_5g083960 56.637 113 49 0 8 120 38 150 1.45e-44 146
MS.gene043563.t1 MTR_6g005080 52.459 122 58 0 1 122 2 123 7.68e-43 140
MS.gene043563.t1 MTR_3g077240 59.048 105 43 0 8 112 9 113 1.40e-42 140
MS.gene043563.t1 MTR_3g094690 55.357 112 50 0 6 117 44 155 1.69e-42 142
MS.gene043563.t1 MTR_4g105170 57.944 107 45 0 8 114 10 116 2.92e-42 140
MS.gene043563.t1 MTR_7g033800 60.194 103 41 0 8 110 10 112 6.89e-42 138
MS.gene043563.t1 MTR_3g073690 58.824 102 42 0 8 109 8 109 5.52e-41 137
MS.gene043563.t1 MTR_5g075020 58.929 112 46 0 6 117 40 151 3.26e-40 135
MS.gene043563.t1 MTR_5g075020 58.929 112 46 0 6 117 44 155 5.18e-40 135
MS.gene043563.t1 MTR_3g094690 54.464 112 50 1 6 117 44 154 5.89e-40 135
MS.gene043563.t1 MTR_5g017950 56.863 102 44 0 8 109 7 108 1.18e-38 134
MS.gene043563.t1 MTR_3g452660 53.271 107 50 0 8 114 6 112 1.18e-36 128
MS.gene043563.t1 MTR_3g071420 58.333 96 40 0 8 103 13 108 1.94e-36 125
MS.gene043563.t1 MTR_5g083010 55.882 102 45 0 8 109 10 111 9.00e-36 123
MS.gene043563.t1 MTR_8g040900 55.660 106 47 0 8 113 6 111 1.16e-34 121
MS.gene043563.t1 MTR_7g028905 44.144 111 62 0 5 115 1 111 1.61e-34 117
MS.gene043563.t1 MTR_6g027710 41.060 151 78 3 6 151 37 181 8.84e-34 119
MS.gene043563.t1 MTR_7g096530 53.398 103 47 1 8 109 13 115 2.25e-33 118
MS.gene043563.t1 MTR_8g036105 51.402 107 51 1 8 113 17 123 9.26e-33 116
MS.gene043563.t1 MTR_8g079660 49.038 104 53 0 6 109 5 108 1.74e-32 117
MS.gene043563.t1 MTR_7g074990 50.000 102 50 1 9 109 20 121 2.41e-32 115
MS.gene043563.t1 MTR_1g070220 50.909 110 53 1 2 110 8 117 2.68e-32 115
MS.gene043563.t1 MTR_8g036085 48.148 108 55 1 8 114 22 129 1.38e-31 114
MS.gene043563.t1 MTR_5g093010 41.441 111 65 0 5 115 1 111 1.45e-31 111
MS.gene043563.t1 MTR_8g079620 44.361 133 69 2 6 135 5 135 1.66e-31 114
MS.gene043563.t1 MTR_1g070205 51.961 102 46 2 9 107 12 113 4.51e-30 110
MS.gene043563.t1 MTR_7g096610 51.546 97 46 1 8 103 7 103 1.21e-29 108
MS.gene043563.t1 MTR_7g075230 50.476 105 49 2 8 109 11 115 3.97e-29 106
MS.gene043563.t1 MTR_6g027700 40.517 116 63 2 9 123 7 117 1.43e-28 105
MS.gene043563.t1 MTR_5g080470 48.958 96 48 1 8 102 6 101 2.88e-28 104
MS.gene043563.t1 MTR_6g011250 33.735 166 93 4 10 170 10 163 7.93e-28 102
MS.gene043563.t1 MTR_8g079580 47.170 106 55 1 6 110 5 110 5.50e-27 102
MS.gene043563.t1 MTR_6g011200 42.857 119 63 2 10 123 10 128 1.97e-26 100
MS.gene043563.t1 MTR_4g107450 45.161 93 51 0 10 102 11 103 4.03e-25 98.6
MS.gene043563.t1 MTR_6g011230 48.101 79 41 0 10 88 12 90 1.65e-22 89.7
MS.gene043563.t1 MTR_4g099230 44.211 95 48 2 10 99 3 97 2.79e-22 87.8
MS.gene043563.t1 MTR_2g100020 39.000 100 61 0 10 109 20 119 3.22e-22 90.5
MS.gene043563.t1 MTR_8g017090 39.048 105 59 1 10 114 13 112 2.73e-20 85.9
MS.gene043563.t1 MTR_5g085390 46.250 80 42 1 10 88 10 89 3.60e-18 79.0
MS.gene043563.t1 MTR_4g088035 33.721 86 57 0 10 95 7 92 1.39e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043563.t1 AT2G28500 65.405 185 46 4 5 174 51 232 2.22e-78 233
MS.gene043563.t1 AT1G07900 66.092 174 44 3 4 174 28 189 3.54e-77 228
MS.gene043563.t1 AT2G30130 65.741 108 37 0 8 115 7 114 2.31e-50 160
MS.gene043563.t1 AT1G31320 66.667 114 38 0 4 117 8 121 9.25e-47 150
MS.gene043563.t1 AT1G16530 47.273 165 74 4 6 169 11 163 4.12e-45 146
MS.gene043563.t1 AT5G63090 58.182 110 46 0 8 117 10 119 7.41e-44 144
MS.gene043563.t1 AT5G63090 58.182 110 46 0 8 117 10 119 7.41e-44 144
MS.gene043563.t1 AT5G63090 58.182 110 46 0 8 117 10 119 7.41e-44 144
MS.gene043563.t1 AT5G63090 58.182 110 46 0 8 117 10 119 7.41e-44 144
MS.gene043563.t1 AT3G27650 60.194 103 41 0 8 110 38 140 7.80e-43 140
MS.gene043563.t1 AT2G30340 52.174 115 55 0 6 120 50 164 8.77e-43 144
MS.gene043563.t1 AT2G30340 52.174 115 55 0 6 120 49 163 9.42e-43 143
MS.gene043563.t1 AT2G23660 56.731 104 45 0 8 111 4 107 6.18e-41 140
MS.gene043563.t1 AT2G23660 56.731 104 45 0 8 111 4 107 6.18e-41 140
MS.gene043563.t1 AT2G23660 56.731 104 45 0 8 111 4 107 6.18e-41 140
MS.gene043563.t1 AT2G40470 57.143 112 48 0 6 117 17 128 2.78e-39 132
MS.gene043563.t1 AT2G40470 56.780 118 50 1 6 123 42 158 5.74e-39 132
MS.gene043563.t1 AT3G26620 52.212 113 52 1 7 117 1 113 9.13e-39 129
MS.gene043563.t1 AT5G66870 56.863 102 44 0 8 109 6 107 9.14e-39 134
MS.gene043563.t1 AT3G26660 52.212 113 52 1 7 117 1 113 9.44e-39 129
MS.gene043563.t1 AT1G65620 56.637 113 49 0 1 113 1 113 9.61e-37 126
MS.gene043563.t1 AT1G65620 56.637 113 49 0 1 113 1 113 9.61e-37 126
MS.gene043563.t1 AT1G65620 56.637 113 49 0 1 113 1 113 9.61e-37 126
MS.gene043563.t1 AT1G65620 56.637 113 49 0 1 113 1 113 9.61e-37 126
MS.gene043563.t1 AT1G65620 56.637 113 49 0 1 113 1 113 9.61e-37 126
MS.gene043563.t1 AT4G00210 56.075 107 46 1 8 113 10 116 3.25e-36 125
MS.gene043563.t1 AT3G11090 52.427 103 49 0 8 110 10 112 1.14e-35 122
MS.gene043563.t1 AT3G03760 48.214 112 57 1 8 118 50 161 4.51e-34 121
MS.gene043563.t1 AT3G58190 41.558 154 75 5 9 160 11 151 1.15e-31 114
MS.gene043563.t1 AT4G00220 40.667 150 80 2 12 152 20 169 4.28e-31 112
MS.gene043563.t1 AT2G31310 52.577 97 45 1 8 103 6 102 6.49e-31 110
MS.gene043563.t1 AT2G45410 53.398 103 47 1 12 113 19 121 6.65e-31 111
MS.gene043563.t1 AT2G42430 47.664 107 55 1 8 113 14 120 1.67e-30 111
MS.gene043563.t1 AT2G45420 50.000 104 51 1 12 114 40 143 2.48e-30 111
MS.gene043563.t1 AT2G42440 47.619 126 58 4 8 132 6 124 1.80e-29 108
MS.gene043563.t1 AT5G06080 43.750 112 62 1 8 118 6 117 7.82e-28 102
MS.gene043563.t1 AT3G50510 44.231 104 58 0 6 109 9 112 5.06e-27 101
MS.gene043563.t1 AT3G50510 44.231 104 58 0 6 109 9 112 5.06e-27 101
MS.gene043563.t1 AT3G47870 43.396 106 55 1 10 115 37 137 7.89e-26 100
MS.gene043563.t1 AT1G72980 44.211 95 53 0 8 102 12 106 1.39e-24 95.5
MS.gene043563.t1 AT5G35900 41.000 100 59 0 10 109 6 105 6.07e-24 93.6
MS.gene043563.t1 AT3G13850 40.000 105 58 1 10 114 37 136 1.34e-22 91.3
MS.gene043563.t1 AT1G06280 39.286 84 48 1 10 90 25 108 2.76e-17 76.3
MS.gene043563.t1 AT2G19820 38.043 92 56 1 5 95 8 99 4.56e-17 73.6
MS.gene043563.t1 AT4G22700 39.216 102 58 3 10 109 6 105 2.07e-16 73.6
MS.gene043563.t1 AT1G36000 32.353 102 69 0 1 102 1 102 4.91e-13 62.8
MS.gene043563.t1 AT5G15060 41.892 74 39 2 10 80 18 90 1.52e-11 59.3
MS.gene043563.t1 AT2G19510 29.412 102 72 0 1 102 1 102 9.10e-11 57.0

Find 35 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTCATTGACTTGCTTT+TGG 0.213159 2.2:+7516735 None:intergenic
ACCACTGCTCATCGTGTATT+TGG 0.246441 2.2:-7519414 MS.gene043563:CDS
GAGGCTCCCACAATGAATTT+TGG 0.257844 2.2:+7516516 None:intergenic
ATTCATTGTGGGAGCCTCTT+TGG 0.264450 2.2:-7516511 MS.gene043563:CDS
ACGATGAGCAGTGGTAAATT+TGG 0.308489 2.2:+7519422 None:intergenic
GGTTCAGTGGGAGGGAAATA+AGG 0.330275 2.2:+7519447 None:intergenic
CAACATCATCAAGTTCTTAC+AGG 0.365225 2.2:-7519385 MS.gene043563:intron
AGAATAAGAGACCCTGTATA+TGG 0.385791 2.2:-7516782 MS.gene043563:CDS
GGTAAATTTGGAAGGTTCAG+TGG 0.438516 2.2:+7519434 None:intergenic
ATGTGCTGAGAAATGTGTTT+TGG 0.444237 2.2:-7519472 MS.gene043563:CDS
GCACCTGCACATCCATATAC+AGG 0.450577 2.2:+7516770 None:intergenic
AGTTAGTAGCATGGTTTATG+AGG 0.452667 2.2:-7516813 MS.gene043563:CDS
GCAAATCAAAGCTAGGAGAT+TGG 0.453679 2.2:+7516658 None:intergenic
TAAGAACTTGATGATGTTGC+TGG 0.462784 2.2:+7519389 None:intergenic
TCTCCTAGCTTTGATTTGCA+TGG 0.470568 2.2:-7516654 MS.gene043563:CDS
GATTGTTGTGGAGAGTCGTT+TGG 0.473738 2.2:+7516617 None:intergenic
GCATCAGCTCTTTGAGACTC+TGG 0.485917 2.2:+7516836 None:intergenic
ATTTGGAAGGTTCAGTGGGA+GGG 0.499239 2.2:+7519439 None:intergenic
TGATAATCACTGCTGTAGGC+AGG 0.499915 2.2:+7516572 None:intergenic
TTTCCATGCAAATCAAAGCT+AGG 0.502277 2.2:+7516651 None:intergenic
CACTAGCCAAAATTCATTGT+GGG 0.528888 2.2:-7516522 MS.gene043563:CDS
AATTTGGAAGGTTCAGTGGG+AGG 0.549947 2.2:+7519438 None:intergenic
GCTCAACTTCATGTCCAAAG+AGG 0.560755 2.2:+7516497 None:intergenic
GTAAATTTGGAAGGTTCAGT+GGG 0.562077 2.2:+7519435 None:intergenic
GACCCTGTATATGGATGTGC+AGG 0.562336 2.2:-7516773 MS.gene043563:CDS
AGCTGATGCAGTTAGTAGCA+TGG 0.566903 2.2:-7516822 MS.gene043563:CDS
TGAGCAGTGGTAAATTTGGA+AGG 0.588814 2.2:+7519426 None:intergenic
AAAATCTTGCAAGCAGCACA+AGG 0.592933 2.2:+7519504 None:intergenic
CAAGGACTCATGACAACTTG+AGG 0.595290 2.2:+7519522 None:intergenic
ATGACAACTTGAGGAGCCAT+AGG 0.596176 2.2:+7519531 None:intergenic
ACCAAATACACGATGAGCAG+TGG 0.596399 2.2:+7519413 None:intergenic
CGACTCTCCACAACAATCAG+TGG 0.605554 2.2:-7516612 MS.gene043563:CDS
CACCTGCACATCCATATACA+GGG 0.624861 2.2:+7516771 None:intergenic
ACACTAGCCAAAATTCATTG+TGG 0.631207 2.2:-7516523 MS.gene043563:CDS
AAGTTGTCCACTGATTGTTG+TGG 0.676997 2.2:+7516605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG - chr2.2:7517123-7517142 MS.gene043563:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr2.2:7517122-7517141 MS.gene043563:intron 10.0%
!! TTAATCTTTCAATAAATTAA+AGG + chr2.2:7518679-7518698 None:intergenic 10.0%
!!! AAAAATTTACAAGATTTTAT+AGG + chr2.2:7516724-7516743 None:intergenic 10.0%
!!! CATTTTAAAACAAATTTTTT+TGG + chr2.2:7517221-7517240 None:intergenic 10.0%
!!! GTTATTTAAAACAAAAAAAT+TGG + chr2.2:7518949-7518968 None:intergenic 10.0%
!!! TATTTTTAAAAGTAATACTT+TGG + chr2.2:7517324-7517343 None:intergenic 10.0%
!! AAAATAACCAATAGTTAATA+AGG - chr2.2:7517338-7517357 MS.gene043563:intron 15.0%
!! AAAATTGTGTCAATTAAATT+GGG + chr2.2:7517087-7517106 None:intergenic 15.0%
!! AAAGTAGAATATATTGTATT+GGG - chr2.2:7517147-7517166 MS.gene043563:intron 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr2.2:7517348-7517367 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr2.2:7517347-7517366 MS.gene043563:intron 15.0%
!! AATTTCATAGATAATATTTC+CGG - chr2.2:7518538-7518557 MS.gene043563:intron 15.0%
!! ACAATAGTTAAGTAAAATTT+AGG - chr2.2:7519007-7519026 MS.gene043563:intron 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr2.2:7517124-7517143 MS.gene043563:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr2.2:7517463-7517482 MS.gene043563:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr2.2:7517462-7517481 MS.gene043563:intron 15.0%
!!! AAAATTACACATTTTCAAAT+GGG + chr2.2:7518035-7518054 None:intergenic 15.0%
!!! CATTTTTTATAGATCAAAAT+AGG + chr2.2:7516902-7516921 None:intergenic 15.0%
!!! TGTTTTAAATAACTTATTCA+TGG - chr2.2:7518956-7518975 MS.gene043563:intron 15.0%
!! AAATATGATCAAAGTAAGTT+TGG + chr2.2:7518060-7518079 None:intergenic 20.0%
!! AATAAGAATTGAGAAAAACA+AGG + chr2.2:7517830-7517849 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr2.2:7517261-7517280 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr2.2:7517495-7517514 MS.gene043563:intron 20.0%
!! ATATTGTCTTGAGTATTAAA+TGG + chr2.2:7518477-7518496 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG + chr2.2:7517088-7517107 None:intergenic 20.0%
!! GAAAGTAGAATATATTGTAT+TGG - chr2.2:7517146-7517165 MS.gene043563:intron 20.0%
!! GGTATCATTCAAAATTAATT+AGG + chr2.2:7517690-7517709 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - chr2.2:7517496-7517515 MS.gene043563:intron 20.0%
!!! AGACACTTTTTTTTAGAAAA+TGG - chr2.2:7517531-7517550 MS.gene043563:intron 20.0%
!!! ATGTGAAGTTTTATTTACAA+CGG + chr2.2:7518567-7518586 None:intergenic 20.0%
!!! ATTGTATGATTTTCTGTATA+TGG - chr2.2:7517625-7517644 MS.gene043563:intron 20.0%
!!! CAAAATTACACATTTTCAAA+TGG + chr2.2:7518036-7518055 None:intergenic 20.0%
!!! CTATGAAATTGAATTTTCAA+AGG + chr2.2:7518528-7518547 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr2.2:7517532-7517551 MS.gene043563:intron 20.0%
!!! TAAAGTGTTACTTTAATAGA+GGG + chr2.2:7517979-7517998 None:intergenic 20.0%
!!! TATTTTTGTCAAAGTTAATG+TGG - chr2.2:7516843-7516862 MS.gene043563:CDS 20.0%
!!! TTAAAGTGTTACTTTAATAG+AGG + chr2.2:7517980-7517999 None:intergenic 20.0%
!!! TTGTTTTTCTCAATTCTTAT+TGG - chr2.2:7517829-7517848 MS.gene043563:intron 20.0%
! AAAACAAAAAAATTGGTCAC+AGG + chr2.2:7518942-7518961 None:intergenic 25.0%
! ACACGGTATATGTTAAATTT+AGG + chr2.2:7518421-7518440 None:intergenic 25.0%
! ATCAAAATAGGTGAATAGTT+AGG + chr2.2:7516890-7516909 None:intergenic 25.0%
! ATCATACAATAGTCAACAAA+TGG + chr2.2:7517615-7517634 None:intergenic 25.0%
! CATCATATATTGACACAAAA+AGG + chr2.2:7517022-7517041 None:intergenic 25.0%
! TAAATTTAACATATACCGTG+TGG - chr2.2:7518420-7518439 MS.gene043563:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr2.2:7517842-7517861 MS.gene043563:intron 25.0%
! TTTAGATAATGTTACATACG+TGG + chr2.2:7516958-7516977 None:intergenic 25.0%
!! AAGATTTTATAGGCCTATAT+AGG + chr2.2:7516714-7516733 None:intergenic 25.0%
!!! AACCATTTTTTGACAACTTT+TGG + chr2.2:7517927-7517946 None:intergenic 25.0%
!!! GTAGTTTTACTTTACAATAC+AGG - chr2.2:7516670-7516689 MS.gene043563:CDS 25.0%
AAAACAATGGAGAGAGAAAA+AGG - chr2.2:7517855-7517874 MS.gene043563:intron 30.0%
CTATATAACTTTGACTCAAG+TGG + chr2.2:7519088-7519107 None:intergenic 30.0%
CTTGTTAGAATTAATGCAAG+AGG + chr2.2:7518450-7518469 None:intergenic 30.0%
GAATAGTTAGGTGAATTTGA+CGG + chr2.2:7516878-7516897 None:intergenic 30.0%
GTCCAAAAGTTGTCAAAAAA+TGG - chr2.2:7517922-7517941 MS.gene043563:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr2.2:7517804-7517823 None:intergenic 30.0%
TCTGTATATGGTATGTTGAT+GGG - chr2.2:7517637-7517656 MS.gene043563:intron 30.0%
TTCTGTATATGGTATGTTGA+TGG - chr2.2:7517636-7517655 MS.gene043563:intron 30.0%
TTCTTTCTACTAGATACTAG+AGG + chr2.2:7518364-7518383 None:intergenic 30.0%
TTGTGTCAATTAAATTGGGA+CGG + chr2.2:7517083-7517102 None:intergenic 30.0%
! AATAAAACAACCTTTTCCGA+TGG + chr2.2:7518326-7518345 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr2.2:7517430-7517449 MS.gene043563:intron 30.0%
!! ATTTTGATAATCACTGCTGT+AGG + chr2.2:7519468-7519487 None:intergenic 30.0%
!!! CTTTTGTGAGACTAGTTTAA+GGG + chr2.2:7517711-7517730 None:intergenic 30.0%
!!! TATTCTCCTCCATTTTTTTC+AGG - chr2.2:7519169-7519188 MS.gene043563:intron 30.0%
!!! TCTTTTAAGACTTTCTCCAT+CGG - chr2.2:7518307-7518326 MS.gene043563:intron 30.0%
!!! TCTTTTGTGAGACTAGTTTA+AGG + chr2.2:7517712-7517731 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr2.2:7517429-7517448 None:intergenic 30.0%
ACACTAGCCAAAATTCATTG+TGG - chr2.2:7519510-7519529 MS.gene043563:CDS 35.0%
AGAATAAGAGACCCTGTATA+TGG - chr2.2:7519251-7519270 MS.gene043563:intron 35.0%
AGTTAGTAGCATGGTTTATG+AGG - chr2.2:7519220-7519239 MS.gene043563:intron 35.0%
ATAGGCCTATATAGGTACTT+AGG + chr2.2:7516706-7516725 None:intergenic 35.0%
ATGTTACATACGTGGTCAAA+TGG + chr2.2:7516950-7516969 None:intergenic 35.0%
ATTTAACATATACCGTGTGG+TGG - chr2.2:7518423-7518442 MS.gene043563:intron 35.0%
CAACATCATCAAGTTCTTAC+AGG - chr2.2:7516648-7516667 MS.gene043563:CDS 35.0%
CACTAGCCAAAATTCATTGT+GGG - chr2.2:7519511-7519530 MS.gene043563:CDS 35.0%
CTGGAAGTTCCTGAAAAAAA+TGG + chr2.2:7519181-7519200 None:intergenic 35.0%
CTGTATATGGTATGTTGATG+GGG - chr2.2:7517638-7517657 MS.gene043563:intron 35.0%
GAAGTTCCTGAAAAAAATGG+AGG + chr2.2:7519178-7519197 None:intergenic 35.0%
GACCATGGTAATTCAAAGTT+CGG - chr2.2:7518984-7519003 MS.gene043563:intron 35.0%
GTAAATTTGGAAGGTTCAGT+GGG + chr2.2:7516601-7516620 None:intergenic 35.0%
TATGCTAACAAGTGTCCTTA+AGG + chr2.2:7518764-7518783 None:intergenic 35.0%
TCAACTGCGTCAAGTATTAA+GGG - chr2.2:7518233-7518252 MS.gene043563:intron 35.0%
TTATTCATGGTGAAAGACCA+TGG - chr2.2:7518969-7518988 MS.gene043563:intron 35.0%
TTTAACATATACCGTGTGGT+GGG - chr2.2:7518424-7518443 MS.gene043563:intron 35.0%
TTTCCATGCAAATCAAAGCT+AGG + chr2.2:7519385-7519404 None:intergenic 35.0%
! ACTAGCCTAAGTACCTATAT+AGG - chr2.2:7516698-7516717 MS.gene043563:CDS 35.0%
! ATGCATTGACATGCAGAATA+AGG - chr2.2:7518210-7518229 MS.gene043563:intron 35.0%
! ATGTGCTGAGAAATGTGTTT+TGG - chr2.2:7516561-7516580 MS.gene043563:CDS 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr2.2:7517299-7517318 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr2.2:7517295-7517314 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr2.2:7517195-7517214 None:intergenic 35.0%
!! TAAGAACTTGATGATGTTGC+TGG + chr2.2:7516647-7516666 None:intergenic 35.0%
!!! GTTTTATTTACAACGGTGAC+CGG + chr2.2:7518560-7518579 None:intergenic 35.0%
AAAATCTTGCAAGCAGCACA+AGG + chr2.2:7516532-7516551 None:intergenic 40.0%
AAGACTTTCTCCATCGGAAA+AGG - chr2.2:7518313-7518332 MS.gene043563:intron 40.0%
AATCCTTAACGAGTGCCTTA+AGG - chr2.2:7518746-7518765 MS.gene043563:intron 40.0%
ACGATGAGCAGTGGTAAATT+TGG + chr2.2:7516614-7516633 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr2.2:7517865-7517884 MS.gene043563:intron 40.0%
ATGGGTCAGTTATTCCGAAA+CGG - chr2.2:7517550-7517569 MS.gene043563:intron 40.0%
CGTCGTCATTCTAAATTCAC+AGG + chr2.2:7516766-7516785 None:intergenic 40.0%
GCAAATCAAAGCTAGGAGAT+TGG + chr2.2:7519378-7519397 None:intergenic 40.0%
GCTTGTCTTGAACTCTCAAT+CGG + chr2.2:7519116-7519135 None:intergenic 40.0%
GGTAAATTTGGAAGGTTCAG+TGG + chr2.2:7516602-7516621 None:intergenic 40.0%
GTCAACTGCGTCAAGTATTA+AGG - chr2.2:7518232-7518251 MS.gene043563:intron 40.0%
GTCCGAACTTTGAATTACCA+TGG + chr2.2:7518989-7519008 None:intergenic 40.0%
TATAGGTACTTAGGCTAGTG+TGG + chr2.2:7516697-7516716 None:intergenic 40.0%
TGAGCAGTGGTAAATTTGGA+AGG + chr2.2:7516610-7516629 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG + chr2.2:7517080-7517099 None:intergenic 40.0%
! AAGTTGTCCACTGATTGTTG+TGG + chr2.2:7519431-7519450 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr2.2:7517296-7517315 None:intergenic 40.0%
!! TCTCCTAGCTTTGATTTGCA+TGG - chr2.2:7519379-7519398 MS.gene043563:intron 40.0%
!!! GAAGCTCATTGACTTGCTTT+TGG + chr2.2:7519301-7519320 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr2.2:7517434-7517453 MS.gene043563:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr2.2:7517453-7517434 None:intergenic 40.0%
AATTTGGAAGGTTCAGTGGG+AGG + chr2.2:7516598-7516617 None:intergenic 45.0%
ACCAAATACACGATGAGCAG+TGG + chr2.2:7516623-7516642 None:intergenic 45.0%
ACCACTGCTCATCGTGTATT+TGG - chr2.2:7516619-7516638 MS.gene043563:CDS 45.0%
AGCTGATGCAGTTAGTAGCA+TGG - chr2.2:7519211-7519230 MS.gene043563:intron 45.0%
ATGGGTCATCTATTGCGAGA+CGG + chr2.2:7518017-7518036 None:intergenic 45.0%
ATTCATTGTGGGAGCCTCTT+TGG - chr2.2:7519522-7519541 MS.gene043563:CDS 45.0%
ATTTGGAAGGTTCAGTGGGA+GGG + chr2.2:7516597-7516616 None:intergenic 45.0%
CAAGGACTCATGACAACTTG+AGG + chr2.2:7516514-7516533 None:intergenic 45.0%
CACCTGCACATCCATATACA+GGG + chr2.2:7519265-7519284 None:intergenic 45.0%
CTGCGTCAAGTATTAAGGGA+CGG - chr2.2:7518237-7518256 MS.gene043563:intron 45.0%
GATTGTTGTGGAGAGTCGTT+TGG + chr2.2:7519419-7519438 None:intergenic 45.0%
GTCAAGTATTAAGGGACGGA+GGG - chr2.2:7518241-7518260 MS.gene043563:intron 45.0%
GTCAGTTATTCCGAAACGGA+GGG - chr2.2:7517554-7517573 MS.gene043563:intron 45.0%
TGATAATCACTGCTGTAGGC+AGG + chr2.2:7519464-7519483 None:intergenic 45.0%
! GAGGCTCCCACAATGAATTT+TGG + chr2.2:7519520-7519539 None:intergenic 45.0%
! GTTTGTTACTCCCTCCGTTT+CGG + chr2.2:7517567-7517586 None:intergenic 45.0%
! TGTCCTTAAGGCACTCGTTA+AGG + chr2.2:7518752-7518771 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr2.2:7517433-7517452 MS.gene043563:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr2.2:7517452-7517433 None:intergenic 45.0%
CGACTCTCCACAACAATCAG+TGG - chr2.2:7519421-7519440 MS.gene043563:CDS 50.0%
CGTCAAGTATTAAGGGACGG+AGG - chr2.2:7518240-7518259 MS.gene043563:intron 50.0%
GACCCTGTATATGGATGTGC+AGG - chr2.2:7519260-7519279 MS.gene043563:intron 50.0%
GCACCTGCACATCCATATAC+AGG + chr2.2:7519266-7519285 None:intergenic 50.0%
GGTCAGTTATTCCGAAACGG+AGG - chr2.2:7517553-7517572 MS.gene043563:intron 50.0%
GGTTCAGTGGGAGGGAAATA+AGG + chr2.2:7516589-7516608 None:intergenic 50.0%
GTCATCTATTGCGAGACGGA+GGG + chr2.2:7518013-7518032 None:intergenic 50.0%
!! GCATCAGCTCTTTGAGACTC+TGG + chr2.2:7519200-7519219 None:intergenic 50.0%
AATGCAAGAGGCCCACCACA+CGG + chr2.2:7518438-7518457 None:intergenic 55.0%
GGTCATCTATTGCGAGACGG+AGG + chr2.2:7518014-7518033 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 7516505 7519550 7516505 ID=MS.gene043563
chr2.2 mRNA 7516505 7519550 7516505 ID=MS.gene043563.t1;Parent=MS.gene043563
chr2.2 exon 7519386 7519550 7519386 ID=MS.gene043563.t1.exon1;Parent=MS.gene043563.t1
chr2.2 CDS 7519386 7519550 7519386 ID=cds.MS.gene043563.t1;Parent=MS.gene043563.t1
chr2.2 exon 7516505 7516864 7516505 ID=MS.gene043563.t1.exon2;Parent=MS.gene043563.t1
chr2.2 CDS 7516505 7516864 7516505 ID=cds.MS.gene043563.t1;Parent=MS.gene043563.t1
Gene Sequence

>MS.gene043563

ATGGCTCCTCAAGTTGTCATGAGTCCTTGTGCTGCTTGCAAGATTTTAAGAAGAAGATGTGCTGAGAAATGTGTTTTGGCACCTTATTTCCCTCCCACTGAACCTTCCAAATTTACCACTGCTCATCGTGTATTTGGTGCCAGCAACATCATCAAGTTCTTACAGGTAGTTTTACTTTACAATACAGGACCACACTAGCCTAAGTACCTATATAGGCCTATAAAATCTTGTAAATTTTTTCTTAAAAAAAAAAAAAATCCTGTGAATTTAGAATGACGACGAATTTGACAAAATCACAACGACATGTTAGATTTCAATTTGTTTAAGTTCAGAAATATTATTTTTGTCAAAGTTAATGTGGCACATCATTCCGTCAAATTCACCTAACTATTCACCTATTTTGATCTATAAAAAATGCACTGCACATTTGTTATATATTTCACCATTTGACCACGTATGTAACATTATCTAAACTAACGCTCTGAATCATGCTCTTTATATGACACGTGATTTTCCTTTTTGTGTCAATATATGATGAAGAGACGTAAATGAAGAATGAATAATAGATACTACCTCCGTCCCAATTTAATTGACACAATTTTGTTTTTCACACGTATTAAGAAAAATGTATAAATAAAGGGGAAAGTAGAATATATTGTATTGGGAATGATAAAAGTAGTACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAAAAAAATTTGTTTTAAAATGAGTGTCGCTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTCCAATTAATACTCTGCACACTACTTCCAAAGTATTACTTTTAAAAATAACCAATAGTTAATAAGGATAATTTGGTAAAATAATCATTCTCTTTCTTTTAATCATTGCATTTCTTAATATGTGTGTAAACACCTAAAACGACACTCATTTTGAAACGGAGGGAGTATTATTTAGTGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGGGTAAGTTATTTTGAGACACTTTTTTTTAGAAAATGGGTCAGTTATTCCGAAACGGAGGGAGTAACAAACATATTACTGTGCATAGACTAGTAGACCATTTGTTGACTATTGTATGATTTTCTGTATATGGTATGTTGATGGGGATGAATAGATATGATAAGACTAGTCTCCTAATTAATTTTGAATGATACCCTTAAACTAGTCTCACAAAAGATACAGTACACATCAATCAATATAATTATAATTGCATATATTTTATTTTAGAGTAATGATATTTTCATATCCATTTGATGACAACTTTGTTGACAACCTTGTTTTTCTCAATTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGGATAACAACATCATGTGAGTGTGAGAGAGAAAGTTGTCCAAAAGTTGTCAAAAAATGGTTGTCAAAATATCATTTCTCTTTATTTTATTCCCTCTATTAAAGTAACACTTTAACTATACTACTCCCTCCGTCTCGCAATAGATGACCCATTTGAAAATGTGTAATTTTGACCAAACTTACTTTGATCATATTTTTCTACTAATATACAAAGATAAATAATATTATATAAGATGTCGTTAGATTTGTCTCGATGAGTATTTTCAAAATATCAAATTTTCATAATTTTTTCTAATATATTATTCAAGATATTTAAGCTCAAAATTATGCATTGACATGCAGAATAAGGTCAACTGCGTCAAGTATTAAGGGACGGAGGGAGTATAATTTATTTTAATTTAGCTTATAATGCTACTATTACTATCTTTTAAGACTTTCTCCATCGGAAAAGGTTGTTTTATTTTTATAGATAGTCAACCTCTAGTATCTAGTAGAAAGAATGCAATTTCACTTAAGATAATGATTTTTCAACAACCTAAATTTAACATATACCGTGTGGTGGGCCTCTTGCATTAATTCTAACAAGAAAACCATTTAATACTCAAGACAATATAGTTGACATTTAAACATATTAAATTTGTCCTTTGAAAATTCAATTTCATAGATAATATTTCCGGTCACCGTTGTAAATAAAACTTCACATTTTAAATACATTAACAAAAAAATATTAACAAATGTCTTTAGAGCATTTGATAAGAAATTTAAAGTAGCAACTTTATCTTAAAAATTATGCCTTTAATTTATTGAAAGATTAAAAACAACTTTTTTTTTACATGAAATTTTACAATTATTTCGTTTTTTGAATCCTTAACGAGTGCCTTAAGGACACTTGTTAGCATAACTCATTAAATAATTAATGTATCTAGTTTTTATTATAGATTAGATATATGAATTATTCATTGTATCTAAAAAATGAAGTGTTACTTATAATAGTGACTGAATGAAGTAGTAATCAAAATGATTTTGACTATAGTATTTTGACATTAAATATATATCCTGTGACCAATTTTTTTGTTTTAAATAACTTATTCATGGTGAAAGACCATGGTAATTCAAAGTTCGGACAATAGTTAAGTAAAATTTAGGCATGATTATTTTTATCAAGAATCGAACTCGAATTTTCTCAAACAACTGTTATTAACCACTTGAGTCAAAGTTATATAGTGTGACCGATTGAGAGTTCAAGACAAGCATTGATTCAAGCACTCATAATTAATGATAAAATTATTCTCCTCCATTTTTTTCAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTTAGTAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGTCAGCTCCAAAAGCAAGTCAATGAGCTTCAAGCACAACTAGCTAAGTCACAAGCTGAGCTTATTAACATGCAGTTACAACAATCCAATCTCCTAGCTTTGATTTGCATGGAAATAAAAGAAACTCCAAACGACTCTCCACAACAATCAGTGGACAACTTCATTTCAAGTCCTGCCTACAGCAGTGATTATCAAAATAATCTCAACTTCTTTGACGACAACACTAGCCAAAATTCATTGTGGGAGCCTCTTTGGACATGA
Protein sequence

>MS.gene043563.t1

MAPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPSKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAELINMQLQQSNLLALICMEIKETPNDSPQQSVDNFISSPAYSSDYQNNLNFFDDNTSQNSLWEPLWT