AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043578

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043578.t1 MTR_2g093810 94.044 319 18 1 1 319 1 318 0.0 609
MS.gene043578.t1 MTR_7g100990 48.182 330 140 5 10 319 7 325 4.17e-95 285
MS.gene043578.t1 MTR_5g041940 67.059 170 54 1 14 183 3 170 1.01e-82 251
MS.gene043578.t1 MTR_4g081870 65.896 173 57 1 8 180 3 173 2.48e-81 248
MS.gene043578.t1 MTR_2g080010 64.815 162 50 1 14 168 15 176 1.16e-78 244
MS.gene043578.t1 MTR_7g085220 65.714 175 51 4 14 180 8 181 3.95e-78 242
MS.gene043578.t1 MTR_4g089135 63.483 178 46 2 14 172 15 192 5.96e-78 241
MS.gene043578.t1 MTR_2157s0010 66.460 161 48 2 14 168 8 168 3.67e-76 234
MS.gene043578.t1 MTR_3g088110 64.780 159 52 2 10 168 3 157 7.09e-72 224
MS.gene043578.t1 MTR_8g094580 54.595 185 74 2 14 191 7 188 2.26e-69 218
MS.gene043578.t1 MTR_2g079990 58.537 164 62 2 10 173 12 169 5.66e-67 214
MS.gene043578.t1 MTR_8g059170 60.976 164 60 2 10 173 10 169 6.07e-66 210
MS.gene043578.t1 MTR_3g096920 60.000 155 58 2 14 168 7 157 1.67e-64 205
MS.gene043578.t1 MTR_2g079990 51.064 188 66 2 10 173 12 197 1.55e-62 203
MS.gene043578.t1 MTR_5g040420 50.568 176 83 2 1 172 1 176 1.03e-58 193
MS.gene043578.t1 MTR_3g096920 48.168 191 60 2 14 168 7 194 7.34e-58 189
MS.gene043578.t1 MTR_8g467490 50.867 173 80 2 1 168 1 173 1.40e-56 188
MS.gene043578.t1 MTR_6g011860 50.282 177 79 3 16 187 17 189 2.39e-54 182
MS.gene043578.t1 MTR_3g109340 45.813 203 103 4 4 205 13 209 1.32e-53 179
MS.gene043578.t1 MTR_3g109340 45.813 203 102 4 4 205 13 208 4.33e-53 178
MS.gene043578.t1 MTR_6g477900 48.810 168 78 3 14 179 6 167 9.51e-53 173
MS.gene043578.t1 MTR_1g008740 46.377 207 89 5 1 203 15 203 1.28e-52 177
MS.gene043578.t1 MTR_1g008740 46.377 207 89 5 1 203 1 189 1.62e-52 176
MS.gene043578.t1 MTR_2g064090 50.633 158 71 3 13 168 5 157 2.16e-52 176
MS.gene043578.t1 MTR_2g078700 54.194 155 69 1 14 168 23 175 4.49e-52 176
MS.gene043578.t1 MTR_6g012670 50.000 168 80 2 8 175 14 177 5.58e-52 174
MS.gene043578.t1 MTR_7g005280 54.605 152 60 2 14 165 15 157 2.10e-51 171
MS.gene043578.t1 MTR_6g084430 50.625 160 71 2 14 173 5 156 3.27e-51 172
MS.gene043578.t1 MTR_4g108760 49.697 165 69 3 14 173 17 172 1.08e-49 169
MS.gene043578.t1 MTR_4g134460 52.667 150 64 3 16 165 56 198 2.38e-49 170
MS.gene043578.t1 MTR_3g435150 49.697 165 79 3 9 173 11 171 3.16e-49 166
MS.gene043578.t1 MTR_5g076850 52.795 161 62 4 13 168 5 156 3.29e-49 174
MS.gene043578.t1 MTR_5g090970 48.023 177 86 3 16 186 20 196 3.66e-49 166
MS.gene043578.t1 MTR_1g069805 44.886 176 89 2 13 188 9 176 5.38e-49 165
MS.gene043578.t1 MTR_2g062730 45.026 191 93 4 13 200 9 190 6.30e-49 167
MS.gene043578.t1 MTR_7g085260 49.390 164 79 3 7 168 10 171 2.41e-48 166
MS.gene043578.t1 MTR_4g036030 50.943 159 63 4 15 168 8 156 6.28e-48 164
MS.gene043578.t1 MTR_4g098630 45.810 179 88 4 13 187 5 178 1.49e-47 162
MS.gene043578.t1 MTR_8g099750 51.948 154 69 3 14 165 14 164 1.69e-47 159
MS.gene043578.t1 MTR_3g064580 51.266 158 70 4 13 168 5 157 1.79e-47 169
MS.gene043578.t1 MTR_4g035590 48.538 171 72 4 8 175 2 159 9.37e-47 161
MS.gene043578.t1 MTR_5g090970 47.429 175 85 4 16 184 20 193 1.08e-46 160
MS.gene043578.t1 MTR_3g070030 50.000 160 77 2 14 173 19 175 1.17e-46 161
MS.gene043578.t1 MTR_2g068880 46.243 173 82 5 16 177 24 196 1.61e-46 159
MS.gene043578.t1 MTR_8g024480 46.746 169 80 3 15 175 16 182 1.67e-46 162
MS.gene043578.t1 MTR_2g068920 46.429 168 80 5 16 173 23 190 2.78e-46 158
MS.gene043578.t1 MTR_6g032770 46.746 169 84 3 1 165 1 167 2.96e-46 160
MS.gene043578.t1 MTR_8g076110 44.767 172 84 3 15 183 7 170 3.99e-46 158
MS.gene043578.t1 MTR_7g097090 48.366 153 71 2 13 165 9 153 4.83e-46 157
MS.gene043578.t1 MTR_4g075980 38.627 233 121 4 16 239 17 236 7.92e-46 157
MS.gene043578.t1 MTR_5g021710 48.408 157 70 3 15 168 9 157 9.27e-46 159
MS.gene043578.t1 MTR_1g096430 48.408 157 70 3 15 168 8 156 2.08e-45 157
MS.gene043578.t1 MTR_3g116070 53.731 134 61 1 9 141 18 151 2.56e-45 157
MS.gene043578.t1 MTR_5g012080 47.799 159 70 4 15 168 8 158 5.01e-45 157
MS.gene043578.t1 MTR_4g101680 44.186 172 84 4 15 182 8 171 5.29e-45 157
MS.gene043578.t1 MTR_8g094580 52.941 136 54 2 63 191 2 134 5.71e-45 153
MS.gene043578.t1 MTR_5g014300 44.828 174 81 4 13 179 5 170 1.94e-44 155
MS.gene043578.t1 MTR_2g064470 46.711 152 74 3 14 165 11 155 7.36e-44 152
MS.gene043578.t1 MTR_3g098810 50.314 159 73 4 14 168 14 170 1.09e-42 147
MS.gene043578.t1 MTR_3g096140 45.806 155 76 4 16 168 9 157 4.22e-42 147
MS.gene043578.t1 MTR_3g096140 45.806 155 76 4 16 168 9 157 2.18e-41 147
MS.gene043578.t1 MTR_1g097300 51.562 128 58 2 16 141 21 146 4.21e-41 150
MS.gene043578.t1 MTR_7g011120 45.122 164 80 3 14 169 8 169 7.02e-41 145
MS.gene043578.t1 MTR_7g011130 42.197 173 87 2 14 175 19 189 1.39e-40 145
MS.gene043578.t1 MTR_1g090720 46.250 160 80 3 13 168 41 198 2.27e-40 147
MS.gene043578.t1 MTR_2g086880 44.509 173 77 5 16 182 20 179 3.75e-40 147
MS.gene043578.t1 MTR_5g069030 45.251 179 85 6 14 186 25 196 4.99e-40 148
MS.gene043578.t1 MTR_2g086880 44.509 173 77 5 16 182 20 179 5.98e-40 147
MS.gene043578.t1 MTR_3g098810 52.555 137 61 2 14 148 14 148 1.05e-39 137
MS.gene043578.t1 MTR_1g090723 40.642 187 91 6 16 189 10 189 3.02e-39 146
MS.gene043578.t1 MTR_3g093050 45.556 180 88 5 13 189 21 193 7.41e-39 145
MS.gene043578.t1 MTR_3g093050 45.556 180 88 5 13 189 21 193 7.75e-39 144
MS.gene043578.t1 MTR_1g090723 40.107 187 91 6 16 189 10 188 1.55e-38 144
MS.gene043578.t1 MTR_1g090723 40.107 187 91 6 16 189 10 188 2.43e-38 144
MS.gene043578.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 2.76e-38 139
MS.gene043578.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 3.54e-38 140
MS.gene043578.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 4.67e-38 140
MS.gene043578.t1 MTR_3g093040 41.622 185 89 5 10 185 104 278 9.05e-37 134
MS.gene043578.t1 MTR_8g093580 42.581 155 81 4 16 168 8 156 1.09e-36 137
MS.gene043578.t1 MTR_0036s0150 38.710 186 95 5 16 189 7 185 2.01e-36 137
MS.gene043578.t1 MTR_3g070040 45.161 155 80 2 14 168 8 157 2.35e-36 133
MS.gene043578.t1 MTR_4g052620 45.283 159 76 5 14 165 5 159 1.58e-35 129
MS.gene043578.t1 MTR_8g023840 40.217 184 93 6 11 181 8 187 2.45e-35 132
MS.gene043578.t1 MTR_7g105170 36.318 201 117 5 14 207 4 200 4.52e-34 125
MS.gene043578.t1 MTR_4g094302 37.580 157 88 2 14 168 11 159 7.17e-34 123
MS.gene043578.t1 MTR_4g094302 40.625 128 68 1 14 141 11 130 1.16e-32 119
MS.gene043578.t1 MTR_3g096140 42.958 142 73 4 29 168 1 136 2.34e-32 123
MS.gene043578.t1 MTR_2g086690 42.138 159 80 5 15 165 5 159 1.30e-31 119
MS.gene043578.t1 MTR_8g023860 42.208 154 76 5 15 165 13 156 4.32e-31 121
MS.gene043578.t1 MTR_8g023930 38.674 181 94 6 14 181 24 200 4.53e-31 122
MS.gene043578.t1 MTR_8g023900 41.463 164 78 6 13 168 187 340 9.11e-31 121
MS.gene043578.t1 MTR_8g023900 39.264 163 80 5 14 169 12 162 1.49e-30 120
MS.gene043578.t1 MTR_8g093790 37.654 162 75 5 7 168 3 138 1.44e-27 106
MS.gene043578.t1 MTR_7g070140 56.000 75 33 0 67 141 17 91 3.41e-23 93.6
MS.gene043578.t1 MTR_3g096400 35.976 164 81 8 14 165 7 158 7.25e-22 92.0
MS.gene043578.t1 MTR_8g023880 34.437 151 75 6 9 140 2 147 7.07e-20 87.8
MS.gene043578.t1 MTR_7g083330 28.313 166 111 5 8 169 12 173 4.24e-16 75.9
MS.gene043578.t1 MTR_7g083360 32.031 128 81 4 14 139 10 133 7.02e-16 74.3
MS.gene043578.t1 MTR_7g070150 45.763 59 25 1 113 171 9 60 4.49e-12 61.6
MS.gene043578.t1 MTR_1g045470 31.111 180 99 9 22 188 13 180 1.60e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043578.t1 AT1G69490 67.059 170 54 1 10 179 5 172 7.97e-82 249
MS.gene043578.t1 AT1G61110 66.860 172 40 3 14 173 16 182 1.50e-79 245
MS.gene043578.t1 AT3G15510 61.404 171 59 1 18 181 21 191 2.65e-76 238
MS.gene043578.t1 AT1G77450 63.975 161 54 2 8 168 4 160 2.17e-73 227
MS.gene043578.t1 AT3G04070 56.842 190 67 3 13 187 9 198 9.34e-73 228
MS.gene043578.t1 AT1G01720 66.452 155 49 1 14 168 7 158 4.00e-72 225
MS.gene043578.t1 AT3G04070 54.369 206 63 4 13 187 9 214 4.05e-72 227
MS.gene043578.t1 AT5G08790 57.778 180 72 2 9 187 2 178 1.87e-69 218
MS.gene043578.t1 AT1G52880 67.702 161 46 3 18 172 21 181 4.92e-69 218
MS.gene043578.t1 AT5G63790 58.659 179 67 4 9 184 45 219 3.30e-68 216
MS.gene043578.t1 AT5G63790 58.659 179 67 4 9 184 55 229 4.93e-68 216
MS.gene043578.t1 AT3G15500 57.988 169 65 2 10 178 10 172 6.19e-67 213
MS.gene043578.t1 AT4G27410 57.317 164 64 2 10 173 10 167 1.07e-66 211
MS.gene043578.t1 AT1G52890 57.225 173 68 2 1 173 1 167 2.14e-66 211
MS.gene043578.t1 AT4G27410 51.934 181 64 3 10 173 10 184 2.29e-62 201
MS.gene043578.t1 AT2G24430 50.588 170 79 2 4 173 6 170 3.47e-55 182
MS.gene043578.t1 AT2G24430 50.588 170 79 2 4 173 6 170 3.47e-55 182
MS.gene043578.t1 AT1G26870 52.532 158 70 1 16 168 18 175 2.47e-54 183
MS.gene043578.t1 AT5G39820 41.706 211 106 2 16 209 22 232 3.66e-54 180
MS.gene043578.t1 AT1G76420 50.307 163 76 1 14 176 22 179 6.77e-54 179
MS.gene043578.t1 AT5G53950 52.147 163 75 2 6 168 10 169 5.02e-53 178
MS.gene043578.t1 AT5G07680 51.852 162 74 3 14 175 17 174 1.24e-52 176
MS.gene043578.t1 AT5G07680 51.852 162 74 3 14 175 3 160 1.27e-52 176
MS.gene043578.t1 AT5G13180 54.605 152 61 3 14 165 14 157 1.14e-51 171
MS.gene043578.t1 AT3G04060 48.295 176 88 3 5 180 11 183 1.46e-51 173
MS.gene043578.t1 AT3G15170 52.980 151 69 1 15 165 21 169 2.32e-51 172
MS.gene043578.t1 AT5G39610 51.250 160 64 3 14 168 20 170 3.63e-51 171
MS.gene043578.t1 AT5G61430 50.617 162 76 3 14 175 16 173 3.67e-51 172
MS.gene043578.t1 AT3G17730 50.888 169 74 5 14 179 6 168 4.24e-51 169
MS.gene043578.t1 AT1G65910 50.000 170 77 4 13 180 5 168 1.13e-50 177
MS.gene043578.t1 AT2G02450 54.000 150 62 3 16 165 53 195 1.43e-50 173
MS.gene043578.t1 AT2G02450 54.000 150 62 3 16 165 53 195 1.47e-50 172
MS.gene043578.t1 AT2G43000 48.428 159 77 2 16 174 20 173 1.95e-50 169
MS.gene043578.t1 AT3G03200 51.250 160 67 4 13 168 5 157 2.70e-50 174
MS.gene043578.t1 AT3G18400 49.375 160 74 2 14 173 5 157 5.82e-50 169
MS.gene043578.t1 AT2G33480 52.174 161 68 3 14 174 15 166 6.76e-50 167
MS.gene043578.t1 AT5G18270 47.283 184 83 4 6 189 13 182 8.57e-50 169
MS.gene043578.t1 AT2G33480 52.174 161 66 3 14 174 15 164 9.11e-50 167
MS.gene043578.t1 AT3G29035 58.594 128 51 1 14 141 24 149 1.93e-49 167
MS.gene043578.t1 AT5G18270 47.283 184 83 4 6 189 13 182 1.96e-49 168
MS.gene043578.t1 AT5G46590 50.000 178 78 5 14 187 6 176 1.98e-49 166
MS.gene043578.t1 AT5G17260 50.625 160 68 4 13 168 5 157 2.47e-49 171
MS.gene043578.t1 AT2G17040 42.654 211 101 5 16 220 8 204 5.02e-48 162
MS.gene043578.t1 AT1G79580 49.686 159 69 3 13 168 16 166 5.71e-48 165
MS.gene043578.t1 AT1G79580 49.686 159 69 3 13 168 16 166 5.71e-48 165
MS.gene043578.t1 AT1G79580 49.686 159 69 3 13 168 16 166 5.71e-48 165
MS.gene043578.t1 AT1G79580 49.686 159 69 3 13 168 16 166 5.71e-48 165
MS.gene043578.t1 AT1G79580 49.686 159 69 3 13 168 16 166 5.71e-48 165
MS.gene043578.t1 AT4G10350 50.617 162 71 3 7 165 2 157 7.13e-48 164
MS.gene043578.t1 AT4G17980 50.307 163 67 5 13 168 5 160 2.97e-47 160
MS.gene043578.t1 AT1G33280 49.708 171 70 4 8 175 2 159 3.11e-47 161
MS.gene043578.t1 AT4G17980 50.307 163 67 5 13 168 5 160 3.12e-47 161
MS.gene043578.t1 AT1G71930 47.799 159 72 3 13 168 8 158 6.14e-47 161
MS.gene043578.t1 AT1G71930 47.799 159 72 3 13 168 8 158 6.14e-47 161
MS.gene043578.t1 AT1G56010 42.222 180 100 3 14 192 19 195 3.94e-46 159
MS.gene043578.t1 AT4G36160 47.799 159 72 3 13 168 9 159 7.91e-46 159
MS.gene043578.t1 AT4G36160 47.799 159 72 3 13 168 9 159 7.91e-46 159
MS.gene043578.t1 AT4G28530 46.286 175 70 3 14 172 10 176 8.12e-46 159
MS.gene043578.t1 AT4G36160 47.799 159 72 3 13 168 13 163 8.55e-46 159
MS.gene043578.t1 AT5G46590 54.074 135 59 2 14 146 6 139 1.07e-45 156
MS.gene043578.t1 AT2G18060 47.170 159 73 3 13 168 8 158 1.32e-45 159
MS.gene043578.t1 AT2G18060 47.170 159 73 3 13 168 8 158 1.32e-45 159
MS.gene043578.t1 AT1G12260 48.408 157 70 3 15 168 8 156 1.61e-45 158
MS.gene043578.t1 AT3G10480 47.205 161 78 3 10 168 23 178 1.62e-45 160
MS.gene043578.t1 AT1G12260 48.408 157 70 3 15 168 8 156 3.52e-45 158
MS.gene043578.t1 AT3G10480 47.826 161 76 4 10 168 23 177 4.50e-45 159
MS.gene043578.t1 AT5G66300 47.799 159 73 3 13 168 11 162 4.65e-45 155
MS.gene043578.t1 AT1G54330 47.468 158 72 3 13 168 5 153 9.05e-45 155
MS.gene043578.t1 AT1G32770 46.988 166 76 5 15 170 17 180 9.93e-45 156
MS.gene043578.t1 AT5G62380 45.732 164 78 3 14 174 7 162 1.60e-44 155
MS.gene043578.t1 AT5G62380 45.732 164 78 3 14 174 7 162 1.60e-44 155
MS.gene043578.t1 AT3G10490 46.203 158 78 3 13 168 26 178 1.90e-44 152
MS.gene043578.t1 AT1G62700 44.000 175 85 4 15 184 8 174 2.31e-44 156
MS.gene043578.t1 AT1G62700 44.000 175 85 4 15 184 8 174 2.31e-44 156
MS.gene043578.t1 AT1G32510 47.826 161 70 4 14 165 6 161 6.95e-44 152
MS.gene043578.t1 AT3G12977 41.040 173 97 2 14 186 18 185 7.75e-44 152
MS.gene043578.t1 AT2G46770 42.778 180 85 5 15 182 17 190 1.19e-43 154
MS.gene043578.t1 AT3G10490 46.203 158 78 3 13 168 26 178 6.36e-43 154
MS.gene043578.t1 AT1G34180 53.125 128 56 2 16 141 18 143 1.57e-42 152
MS.gene043578.t1 AT3G10500 45.732 164 81 3 7 168 2 159 1.67e-42 154
MS.gene043578.t1 AT1G33060 50.000 158 71 4 13 168 23 174 2.30e-42 155
MS.gene043578.t1 AT1G33060 50.000 158 71 4 13 168 23 174 2.74e-42 155
MS.gene043578.t1 AT3G10480 40.206 194 76 4 10 168 23 211 6.06e-42 152
MS.gene043578.t1 AT1G34180 53.125 128 56 2 16 141 18 143 8.56e-42 152
MS.gene043578.t1 AT4G35580 53.676 136 59 2 7 140 2 135 1.35e-41 151
MS.gene043578.t1 AT4G35580 53.676 136 59 2 7 140 2 135 1.45e-41 151
MS.gene043578.t1 AT4G35580 53.676 136 59 2 7 140 2 135 1.62e-41 151
MS.gene043578.t1 AT3G12910 45.349 172 76 5 16 173 23 190 3.79e-41 145
MS.gene043578.t1 AT3G61910 42.286 175 83 4 15 175 12 182 5.39e-41 145
MS.gene043578.t1 AT1G34190 50.781 128 59 2 16 141 18 143 5.53e-41 150
MS.gene043578.t1 AT5G04410 43.902 164 84 3 7 168 2 159 3.18e-40 148
MS.gene043578.t1 AT1G34180 48.571 140 56 3 16 141 18 155 2.08e-39 144
MS.gene043578.t1 AT5G24590 51.128 133 62 2 13 143 12 143 2.52e-39 144
MS.gene043578.t1 AT3G44290 36.548 197 98 6 16 210 16 187 6.28e-39 137
MS.gene043578.t1 AT1G34180 48.571 140 56 3 16 141 18 155 7.90e-39 144
MS.gene043578.t1 AT5G09330 42.581 155 81 3 16 168 8 156 1.11e-38 143
MS.gene043578.t1 AT5G09330 42.581 155 81 3 16 168 8 156 1.11e-38 143
MS.gene043578.t1 AT5G09330 42.581 155 81 3 16 168 8 156 1.11e-38 143
MS.gene043578.t1 AT5G09330 42.581 155 81 3 16 168 8 156 1.11e-38 143
MS.gene043578.t1 AT5G09330 42.581 155 81 3 16 168 8 156 1.11e-38 143
MS.gene043578.t1 AT2G27300 33.761 234 133 6 16 237 16 239 4.62e-38 138
MS.gene043578.t1 AT3G44290 36.548 197 98 6 16 210 16 187 7.33e-38 137
MS.gene043578.t1 AT5G22290 43.210 162 78 4 13 172 20 169 2.07e-37 136
MS.gene043578.t1 AT3G49530 47.368 133 67 2 13 143 12 143 7.55e-37 136
MS.gene043578.t1 AT3G49530 48.462 130 64 2 13 140 12 140 1.05e-36 137
MS.gene043578.t1 AT5G64060 40.127 157 86 3 14 168 6 156 1.37e-35 132
MS.gene043578.t1 AT5G04395 40.940 149 74 2 8 142 22 170 3.24e-34 124
MS.gene043578.t1 AT1G32870 44.578 166 84 4 8 171 4 163 3.29e-34 131
MS.gene043578.t1 AT1G32870 44.311 167 85 4 8 172 4 164 3.59e-34 131
MS.gene043578.t1 AT1G32870 44.311 167 85 4 8 172 40 200 4.12e-34 131
MS.gene043578.t1 AT5G64530 36.158 177 91 3 14 180 3 167 6.41e-33 120
MS.gene043578.t1 AT5G22380 39.181 171 95 4 17 181 8 175 1.55e-32 121
MS.gene043578.t1 AT5G64530 43.077 130 62 2 14 143 3 120 2.04e-32 118
MS.gene043578.t1 AT3G44350 39.247 186 92 8 17 192 8 182 4.30e-30 114
MS.gene043578.t1 AT3G44350 43.165 139 69 4 17 148 8 143 1.10e-29 111
MS.gene043578.t1 AT4G28530 38.286 175 47 4 14 172 10 139 1.42e-29 115
MS.gene043578.t1 AT1G56010 42.308 130 72 2 63 192 2 128 1.09e-28 111
MS.gene043578.t1 AT5G61430 48.649 111 53 3 65 175 4 110 1.16e-28 111
MS.gene043578.t1 AT4G01550 39.548 177 93 6 17 189 7 173 2.35e-28 114
MS.gene043578.t1 AT4G01520 39.024 164 86 6 15 173 5 159 2.41e-27 108
MS.gene043578.t1 AT2G33480 50.926 108 47 2 67 174 8 109 2.99e-27 106
MS.gene043578.t1 AT4G10350 53.535 99 40 2 67 165 18 110 3.46e-27 108
MS.gene043578.t1 AT3G12977 42.975 121 64 2 66 186 17 132 4.31e-27 106
MS.gene043578.t1 AT4G01540 38.889 162 85 6 17 173 7 159 3.41e-26 107
MS.gene043578.t1 AT4G01540 38.889 162 85 6 17 173 7 159 4.43e-26 107
MS.gene043578.t1 AT4G01540 38.889 162 85 6 17 173 7 159 4.55e-26 107
MS.gene043578.t1 AT4G01540 38.889 162 85 6 17 173 7 159 4.93e-26 107
MS.gene043578.t1 AT3G04420 36.478 159 86 4 15 169 4 151 6.92e-26 104
MS.gene043578.t1 AT3G04420 36.478 159 86 4 15 169 4 151 1.63e-25 104
MS.gene043578.t1 AT1G02230 38.168 131 73 4 15 140 4 131 1.22e-22 97.1
MS.gene043578.t1 AT1G01010 34.595 185 94 7 17 188 6 176 1.01e-21 95.1
MS.gene043578.t1 AT2G43000 45.455 99 49 2 76 174 2 95 1.74e-21 90.5
MS.gene043578.t1 AT5G14000 37.405 131 76 3 14 142 15 141 1.10e-20 87.4
MS.gene043578.t1 AT5G14000 37.405 131 76 3 14 142 15 141 3.44e-20 87.4
MS.gene043578.t1 AT1G02250 32.500 160 92 5 15 169 4 152 8.26e-20 89.4
MS.gene043578.t1 AT1G02220 37.984 129 71 4 15 139 4 127 1.17e-19 89.0
MS.gene043578.t1 AT3G56530 34.783 138 79 4 8 139 46 178 4.41e-17 80.9
MS.gene043578.t1 AT3G10490 47.561 82 38 2 87 168 2 78 6.51e-17 80.9
MS.gene043578.t1 AT3G10490 47.561 82 38 2 87 168 2 78 6.51e-17 80.9
MS.gene043578.t1 AT3G55210 30.178 169 92 6 12 165 9 166 7.82e-15 73.9
MS.gene043578.t1 AT5G50820 32.117 137 79 6 14 146 17 143 3.19e-14 70.5
MS.gene043578.t1 AT2G18060 45.455 77 34 2 92 168 2 70 1.32e-13 70.5
MS.gene043578.t1 AT5G22290 48.148 81 29 3 93 172 2 70 3.23e-13 68.6
MS.gene043578.t1 AT1G28470 33.562 146 76 8 13 141 76 217 5.51e-12 65.9
MS.gene043578.t1 AT3G04430 38.462 104 60 4 20 121 6 107 5.59e-11 61.6

Find 66 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGCACATGAAGAAATTAT+TGG 0.175721 2.2:-7249490 None:intergenic
TCACCCCTTGGTAGGTTTAA+TGG 0.204888 2.2:-7249847 None:intergenic
ATGTCGAGTTTGAGCGTTAA+TGG 0.222020 2.2:+7249988 MS.gene043578:CDS
TCAAACTGTAATCCCTTCTT+TGG 0.246326 2.2:+7250068 MS.gene043578:CDS
TGGAAAAGTGTAATTTGATT+TGG 0.281222 2.2:-7249109 None:intergenic
CCCGAAGCTGCTGTTCTATT+TGG 0.284131 2.2:-7249439 None:intergenic
TTCGGATACTTTCGGTTTCT+CGG 0.305499 2.2:-7249406 None:intergenic
GAACAGCAGCTTCGGGATAC+TGG 0.314644 2.2:+7249446 MS.gene043578:CDS
GATCGAAAGTTCACGTTTGT+AGG 0.317656 2.2:-7249877 None:intergenic
ACCAAATAGAACAGCAGCTT+CGG 0.326451 2.2:+7249438 MS.gene043578:CDS
TTATGTCGGGTTCGAAATAA+AGG 0.361202 2.2:+7249769 MS.gene043578:CDS
TTATTCCATTCGGATACTTT+CGG 0.366835 2.2:-7249414 None:intergenic
CCTTGGTAGGTTTAATGGTA+TGG 0.374086 2.2:-7249842 None:intergenic
TAGATGGAGGGACAACAAAA+TGG 0.376134 2.2:+7249084 None:intergenic
CTAACTTCAGTTTATGAAGA+AGG 0.386642 2.2:+7250027 MS.gene043578:CDS
CTTTGTTTGGTGAGGAAGAA+TGG 0.399941 2.2:+7249371 MS.gene043578:CDS
CTATTTGGTCTTATTCCATT+CGG 0.402956 2.2:-7249424 None:intergenic
TCGGGATACTGGAAGGCAAC+TGG 0.417107 2.2:+7249457 MS.gene043578:CDS
AGATTTGTCTAATTTGTTCT+CGG 0.421589 2.2:-7250178 None:intergenic
GCTATAATCGACGCTGGAAG+TGG 0.423391 2.2:-7249204 None:intergenic
TTATGAAGAAGGTTTCAATA+AGG 0.425370 2.2:+7250038 MS.gene043578:CDS
CCAAATAGAACAGCAGCTTC+GGG 0.428897 2.2:+7249439 MS.gene043578:CDS
TTATTCAGGTAGACCTCCTA+AGG 0.433041 2.2:+7249546 MS.gene043578:CDS
TTTGAGTTTGAACGATTTCG+TGG 0.465187 2.2:-7249617 None:intergenic
GGTAGGTTTAATGGTATGGT+TGG 0.465528 2.2:-7249838 None:intergenic
ATCATAGCCTCTATTCTAGT+TGG 0.470052 2.2:+7249937 MS.gene043578:CDS
AATGGTATGGTTGGTTCACT+AGG 0.470257 2.2:-7249829 None:intergenic
CAATCTGTCTTAACTCCCTT+AGG 0.472334 2.2:-7249562 None:intergenic
TTGAAGTAACATTCCAAAGA+AGG 0.474571 2.2:-7250081 None:intergenic
CTAAGGGAGTTAAGACAGAT+TGG 0.476497 2.2:+7249563 MS.gene043578:CDS
GGATGACTGGGTATTATGTC+GGG 0.477294 2.2:+7249756 MS.gene043578:CDS
TTGCTGATATCTTTATGTAA+AGG 0.481819 2.2:-7250235 None:intergenic
TCATGTGCATCAAAGCATAT+AGG 0.483990 2.2:+7249502 MS.gene043578:CDS
CTCGACATGTTCTCAGTTGG+AGG 0.484459 2.2:-7249973 None:intergenic
TGTGCAGAGAAGTCTTTGTT+TGG 0.486062 2.2:+7249358 MS.gene043578:intron
TGGATGACTGGGTATTATGT+CGG 0.492959 2.2:+7249755 MS.gene043578:CDS
GATCATGAATGAGTATAGAT+TGG 0.501119 2.2:+7249585 MS.gene043578:CDS
ATAGCCTCTATTCTAGTTGG+TGG 0.501858 2.2:+7249940 MS.gene043578:CDS
GTAGGACGTTCTTCACCCCT+TGG 0.504800 2.2:-7249859 None:intergenic
ATCTCTACAAGTATAATCCA+TGG 0.532376 2.2:+7249235 MS.gene043578:CDS
AAACTCGACATGTTCTCAGT+TGG 0.532407 2.2:-7249976 None:intergenic
AACTCCACCAACTAGAATAG+AGG 0.537358 2.2:-7249944 None:intergenic
TGAAGTAACATTCCAAAGAA+GGG 0.552108 2.2:-7250080 None:intergenic
TGAGTTCTTCATCAGAAGGA+TGG 0.561435 2.2:-7249146 None:intergenic
TACTTGAAAACTTACCCGCA+TGG 0.566843 2.2:-7249644 None:intergenic
ACTAAAACGAAAATCTAATG+AGG 0.580125 2.2:+7250107 MS.gene043578:CDS
GCATAAAATTCTTAGATGGA+GGG 0.583191 2.2:+7249072 None:intergenic
GACGTTCTTCACCCCTTGGT+AGG 0.587479 2.2:-7249855 None:intergenic
AGAGAAGTCTTTGTTTGGTG+AGG 0.597719 2.2:+7249363 MS.gene043578:intron
ACGAAATCGTTCAAACTCAA+AGG 0.602796 2.2:+7249619 MS.gene043578:CDS
ATTTCAGCTATAATCGACGC+TGG 0.604840 2.2:-7249210 None:intergenic
AGCAGCTTCGGGATACTGGA+AGG 0.607218 2.2:+7249450 MS.gene043578:CDS
TCTGTCTTAACTCCCTTAGG+AGG 0.608939 2.2:-7249559 None:intergenic
ACTATGAGTTCTTCATCAGA+AGG 0.609045 2.2:-7249150 None:intergenic
CCATACCATTAAACCTACCA+AGG 0.620878 2.2:+7249842 MS.gene043578:CDS
AGAAACCGAAAGTATCCGAA+TGG 0.624712 2.2:+7249409 MS.gene043578:CDS
CAAACTCAAAGGTTCCATGC+GGG 0.628355 2.2:+7249630 MS.gene043578:CDS
TATTCAGGTAGACCTCCTAA+GGG 0.630503 2.2:+7249547 MS.gene043578:CDS
GACATGTTCTCAGTTGGAGG+AGG 0.631484 2.2:-7249970 None:intergenic
TCTCTACAAGTATAATCCAT+GGG 0.640547 2.2:+7249236 MS.gene043578:CDS
AACATACTAGGTAACTCCCA+TGG 0.643583 2.2:-7249252 None:intergenic
CATACCATTAAACCTACCAA+GGG 0.657723 2.2:+7249843 MS.gene043578:CDS
GAAGGATGGAATCTGAAACC+AGG 0.664271 2.2:-7249132 None:intergenic
GGATGGAATCTGAAACCAGG+TGG 0.688994 2.2:-7249129 None:intergenic
TCAAACTCAAAGGTTCCATG+CGG 0.709010 2.2:+7249629 MS.gene043578:CDS
ATACCATTAAACCTACCAAG+GGG 0.762811 2.2:+7249844 MS.gene043578:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATTATGATAAACAAGATT+TGG - chr2.2:7249314-7249333 None:intergenic 20.0%
! ACTAAAACGAAAATCTAATG+AGG + chr2.2:7250107-7250126 MS.gene043578:CDS 25.0%
! TTATGAAGAAGGTTTCAATA+AGG + chr2.2:7250038-7250057 MS.gene043578:CDS 25.0%
!! TCATTAGATTTTCGTTTTAG+TGG - chr2.2:7250108-7250127 None:intergenic 25.0%
!! TGGAAAAGTGTAATTTGATT+TGG - chr2.2:7249112-7249131 None:intergenic 25.0%
!!! AGATTTGTCTAATTTGTTCT+CGG - chr2.2:7250181-7250200 None:intergenic 25.0%
AGTTCAAGCACTATGAATAA+AGG - chr2.2:7249700-7249719 None:intergenic 30.0%
ATCTCTACAAGTATAATCCA+TGG + chr2.2:7249235-7249254 MS.gene043578:CDS 30.0%
CTAACTTCAGTTTATGAAGA+AGG + chr2.2:7250027-7250046 MS.gene043578:CDS 30.0%
GATCATGAATGAGTATAGAT+TGG + chr2.2:7249585-7249604 MS.gene043578:CDS 30.0%
GATGCACATGAAGAAATTAT+TGG - chr2.2:7249493-7249512 None:intergenic 30.0%
GTTCAAGCACTATGAATAAA+GGG - chr2.2:7249699-7249718 None:intergenic 30.0%
TAAGAAGTCAAGAACATACT+AGG - chr2.2:7249267-7249286 None:intergenic 30.0%
TCTCTACAAGTATAATCCAT+GGG + chr2.2:7249236-7249255 MS.gene043578:CDS 30.0%
TGAAGTAACATTCCAAAGAA+GGG - chr2.2:7250083-7250102 None:intergenic 30.0%
TTATTCCATTCGGATACTTT+CGG - chr2.2:7249417-7249436 None:intergenic 30.0%
TTGAAGTAACATTCCAAAGA+AGG - chr2.2:7250084-7250103 None:intergenic 30.0%
!! AAAGCTCTTGTGTTTTATTC+AGG + chr2.2:7249532-7249551 MS.gene043578:CDS 30.0%
!! CTATTTGGTCTTATTCCATT+CGG - chr2.2:7249427-7249446 None:intergenic 30.0%
ACGAAATCGTTCAAACTCAA+AGG + chr2.2:7249619-7249638 MS.gene043578:CDS 35.0%
ACTATGAGTTCTTCATCAGA+AGG - chr2.2:7249153-7249172 None:intergenic 35.0%
ATACCATTAAACCTACCAAG+GGG + chr2.2:7249844-7249863 MS.gene043578:CDS 35.0%
ATCATAGCCTCTATTCTAGT+TGG + chr2.2:7249937-7249956 MS.gene043578:CDS 35.0%
CATACCATTAAACCTACCAA+GGG + chr2.2:7249843-7249862 MS.gene043578:CDS 35.0%
TCAAACTGTAATCCCTTCTT+TGG + chr2.2:7250068-7250087 MS.gene043578:CDS 35.0%
TCATGTGCATCAAAGCATAT+AGG + chr2.2:7249502-7249521 MS.gene043578:CDS 35.0%
TTATGTCGGGTTCGAAATAA+AGG + chr2.2:7249769-7249788 MS.gene043578:CDS 35.0%
! TCAAATTACACTTTTCCACC+TGG + chr2.2:7249114-7249133 MS.gene043578:CDS 35.0%
! TTTGAGTTTGAACGATTTCG+TGG - chr2.2:7249620-7249639 None:intergenic 35.0%
!! AGCTTTTGAAAATCGATGCT+AGG - chr2.2:7250204-7250223 None:intergenic 35.0%
!! CATTTCTCTGCTTTTACAGT+TGG + chr2.2:7249735-7249754 MS.gene043578:intron 35.0%
AAACTCGACATGTTCTCAGT+TGG - chr2.2:7249979-7249998 None:intergenic 40.0%
AACATACTAGGTAACTCCCA+TGG - chr2.2:7249255-7249274 None:intergenic 40.0%
AACTCCACCAACTAGAATAG+AGG - chr2.2:7249947-7249966 None:intergenic 40.0%
ACCAAATAGAACAGCAGCTT+CGG + chr2.2:7249438-7249457 MS.gene043578:CDS 40.0%
ATGTCGAGTTTGAGCGTTAA+TGG + chr2.2:7249988-7250007 MS.gene043578:CDS 40.0%
ATTTCAGCTATAATCGACGC+TGG - chr2.2:7249213-7249232 None:intergenic 40.0%
CAATCTGTCTTAACTCCCTT+AGG - chr2.2:7249565-7249584 None:intergenic 40.0%
CCATACCATTAAACCTACCA+AGG + chr2.2:7249842-7249861 MS.gene043578:CDS 40.0%
CCTTGGTAGGTTTAATGGTA+TGG - chr2.2:7249845-7249864 None:intergenic 40.0%
CTAAGGGAGTTAAGACAGAT+TGG + chr2.2:7249563-7249582 MS.gene043578:CDS 40.0%
GATCGAAAGTTCACGTTTGT+AGG - chr2.2:7249880-7249899 None:intergenic 40.0%
GGTAGGTTTAATGGTATGGT+TGG - chr2.2:7249841-7249860 None:intergenic 40.0%
TACTTGAAAACTTACCCGCA+TGG - chr2.2:7249647-7249666 None:intergenic 40.0%
TATTCAGGTAGACCTCCTAA+GGG + chr2.2:7249547-7249566 MS.gene043578:CDS 40.0%
TCAAACTCAAAGGTTCCATG+CGG + chr2.2:7249629-7249648 MS.gene043578:CDS 40.0%
TGAGTTCTTCATCAGAAGGA+TGG - chr2.2:7249149-7249168 None:intergenic 40.0%
TGGATGACTGGGTATTATGT+CGG + chr2.2:7249755-7249774 MS.gene043578:CDS 40.0%
TGTGCAGAGAAGTCTTTGTT+TGG + chr2.2:7249358-7249377 MS.gene043578:intron 40.0%
TTATTCAGGTAGACCTCCTA+AGG + chr2.2:7249546-7249565 MS.gene043578:CDS 40.0%
TTCGGATACTTTCGGTTTCT+CGG - chr2.2:7249409-7249428 None:intergenic 40.0%
! AATGGTATGGTTGGTTCACT+AGG - chr2.2:7249832-7249851 None:intergenic 40.0%
! AGAGAAGTCTTTGTTTGGTG+AGG + chr2.2:7249363-7249382 MS.gene043578:intron 40.0%
! ATAGCCTCTATTCTAGTTGG+TGG + chr2.2:7249940-7249959 MS.gene043578:CDS 40.0%
! CTTTGTTTGGTGAGGAAGAA+TGG + chr2.2:7249371-7249390 MS.gene043578:CDS 40.0%
! GCTTTTACAGTTGGATGACT+GGG + chr2.2:7249744-7249763 MS.gene043578:intron 40.0%
! TGCTTTTACAGTTGGATGAC+TGG + chr2.2:7249743-7249762 MS.gene043578:intron 40.0%
!! AGAAACCGAAAGTATCCGAA+TGG + chr2.2:7249409-7249428 MS.gene043578:CDS 40.0%
CAAACTCAAAGGTTCCATGC+GGG + chr2.2:7249630-7249649 MS.gene043578:CDS 45.0%
CCAAATAGAACAGCAGCTTC+GGG + chr2.2:7249439-7249458 MS.gene043578:CDS 45.0%
GGATGACTGGGTATTATGTC+GGG + chr2.2:7249756-7249775 MS.gene043578:CDS 45.0%
TCACCCCTTGGTAGGTTTAA+TGG - chr2.2:7249850-7249869 None:intergenic 45.0%
TCTGTCTTAACTCCCTTAGG+AGG - chr2.2:7249562-7249581 None:intergenic 45.0%
! GAAGGATGGAATCTGAAACC+AGG - chr2.2:7249135-7249154 None:intergenic 45.0%
CCCGAAGCTGCTGTTCTATT+TGG - chr2.2:7249442-7249461 None:intergenic 50.0%
CTCGACATGTTCTCAGTTGG+AGG - chr2.2:7249976-7249995 None:intergenic 50.0%
GACATGTTCTCAGTTGGAGG+AGG - chr2.2:7249973-7249992 None:intergenic 50.0%
GCTATAATCGACGCTGGAAG+TGG - chr2.2:7249207-7249226 None:intergenic 50.0%
! GGATGGAATCTGAAACCAGG+TGG - chr2.2:7249132-7249151 None:intergenic 50.0%
AGCAGCTTCGGGATACTGGA+AGG + chr2.2:7249450-7249469 MS.gene043578:CDS 55.0%
GAACAGCAGCTTCGGGATAC+TGG + chr2.2:7249446-7249465 MS.gene043578:CDS 55.0%
GACGTTCTTCACCCCTTGGT+AGG - chr2.2:7249858-7249877 None:intergenic 55.0%
GTAGGACGTTCTTCACCCCT+TGG - chr2.2:7249862-7249881 None:intergenic 55.0%
TCGGGATACTGGAAGGCAAC+TGG + chr2.2:7249457-7249476 MS.gene043578:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 7249087 7250245 7249087 ID=MS.gene043578
chr2.2 mRNA 7249087 7250245 7249087 ID=MS.gene043578.t1;Parent=MS.gene043578
chr2.2 exon 7249087 7249267 7249087 ID=MS.gene043578.t1.exon1;Parent=MS.gene043578.t1
chr2.2 CDS 7249087 7249267 7249087 ID=cds.MS.gene043578.t1;Parent=MS.gene043578.t1
chr2.2 exon 7249365 7249651 7249365 ID=MS.gene043578.t1.exon2;Parent=MS.gene043578.t1
chr2.2 CDS 7249365 7249651 7249365 ID=cds.MS.gene043578.t1;Parent=MS.gene043578.t1
chr2.2 exon 7249754 7250245 7249754 ID=MS.gene043578.t1.exon3;Parent=MS.gene043578.t1
chr2.2 CDS 7249754 7250245 7249754 ID=cds.MS.gene043578.t1;Parent=MS.gene043578.t1
Gene Sequence

>MS.gene043578

ATGGAGGGACAACAAAATGGATCCAAATCAAATTACACTTTTCCACCTGGTTTCAGATTCCATCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAAATCGCGTCCACTTCCAGCGTCGATTATAGCTGAAATTGATCTCTACAAGTATAATCCATGGGAGTTACCTAGTATGTTCTTGACTTCTTACACTATTTGTATTCTTAGTATATACCAAATCTTGTTTATCATAATGAACATGTTTTGCTTTTTCTTGTGATTGTGCAGAGAAGTCTTTGTTTGGTGAGGAAGAATGGTATTTCTTTAGTCCGAGAAACCGAAAGTATCCGAATGGAATAAGACCAAATAGAACAGCAGCTTCGGGATACTGGAAGGCAACTGGAACTGATAAGCCAATAATTTCTTCATGTGCATCAAAGCATATAGGAGTGAAGAAAGCTCTTGTGTTTTATTCAGGTAGACCTCCTAAGGGAGTTAAGACAGATTGGATCATGAATGAGTATAGATTGGTCGACACAACCACGAAATCGTTCAAACTCAAAGGTTCCATGCGGGTAAGTTTTCAAGTAATAAGCATTTATTCATAGTGAAACTGTGACCCTTTATTCATAGTGCTTGAACTCAATGCAATAGTAAGCATTTCTCTGCTTTTACAGTTGGATGACTGGGTATTATGTCGGGTTCGAAATAAAGGCTATTCATCGAAGAATTTATCTGAAAATCAAGAGAATCCTAGTGAACCAACCATACCATTAAACCTACCAAGGGGTGAAGAACGTCCTACAAACGTGAACTTTCGATCTGACATTATCACAGATTATCAGTTCAAAGACTATCAGATCATAGCCTCTATTCTAGTTGGTGGAGTTATACCTCCTCCAACTGAGAACATGTCGAGTTTGAGCGTTAATGGAAGCAAATGCAACAATCTAACTTCAGTTTATGAAGAAGGTTTCAATAAGGTGAATTCTCAAACTGTAATCCCTTCTTTGGAATGTTACTTCAATCCACTAAAACGAAAATCTAATGAGGATGATGATCAGTTTGAAAATCTCATTTCTTTTAACAGCAAGATCAACACCGAGAACAAATTAGACAAATCTCCTAGCATCGATTTTCAAAAGCTAAACGAATTTACCTTTACATAA
Protein sequence

>MS.gene043578.t1

MEGQQNGSKSNYTFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPKKSLFGEEEWYFFSPRNRKYPNGIRPNRTAASGYWKATGTDKPIISSCASKHIGVKKALVFYSGRPPKGVKTDWIMNEYRLVDTTTKSFKLKGSMRLDDWVLCRVRNKGYSSKNLSENQENPSEPTIPLNLPRGEERPTNVNFRSDIITDYQFKDYQIIASILVGGVIPPPTENMSSLSVNGSKCNNLTSVYEEGFNKVNSQTVIPSLECYFNPLKRKSNEDDDQFENLISFNSKINTENKLDKSPSIDFQKLNEFTFT