AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043579

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043579.t1 MTR_2g093960 78.372 430 19 5 1 372 1 414 0.0 620
MS.gene043579.t1 MTR_4g059870 39.547 397 155 18 1 325 1 384 1.12e-61 206
MS.gene043579.t1 MTR_8g017210 66.906 139 30 3 14 146 38 166 1.75e-55 190
MS.gene043579.t1 MTR_1g112270 72.807 114 28 2 35 146 47 159 5.66e-54 187
MS.gene043579.t1 MTR_1g016010 69.828 116 26 1 31 146 40 146 9.60e-53 181
MS.gene043579.t1 MTR_2g099990 71.552 116 23 2 31 146 45 150 1.80e-52 181
MS.gene043579.t1 MTR_1g094115 71.304 115 23 2 32 146 47 151 3.70e-51 179
MS.gene043579.t1 MTR_1g112270 70.536 112 23 2 35 146 47 148 4.72e-49 174
MS.gene043579.t1 MTR_2g090745 76.842 95 21 1 52 146 18 111 1.02e-46 165
MS.gene043579.t1 MTR_2g017720 68.868 106 32 1 52 157 324 428 2.53e-43 155
MS.gene043579.t1 MTR_2g099990 81.707 82 14 1 65 146 1 81 2.41e-42 152
MS.gene043579.t1 MTR_1g094115 59.130 115 20 2 32 146 47 134 6.93e-38 142
MS.gene043579.t1 MTR_3g102000 74.627 67 16 1 77 143 49 114 8.23e-27 106
MS.gene043579.t1 MTR_5g030560 75.000 44 11 0 52 95 17 60 1.01e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043579.t1 AT3G45260 75.862 116 19 1 31 146 38 144 5.10e-57 192
MS.gene043579.t1 AT3G45260 75.862 116 19 1 31 146 38 144 5.10e-57 192
MS.gene043579.t1 AT3G13810 72.727 121 24 1 26 146 45 156 1.10e-56 192
MS.gene043579.t1 AT3G13810 72.727 121 24 1 26 146 59 170 1.49e-56 192
MS.gene043579.t1 AT3G13810 72.727 121 24 1 26 146 64 175 1.54e-56 192
MS.gene043579.t1 AT3G13810 72.727 121 24 1 26 146 64 175 1.54e-56 192
MS.gene043579.t1 AT3G13810 85.567 97 14 0 50 146 66 162 1.87e-55 189
MS.gene043579.t1 AT3G13810 85.567 97 14 0 50 146 80 176 2.11e-55 190
MS.gene043579.t1 AT5G03150 71.429 119 25 1 28 146 49 158 9.55e-55 188
MS.gene043579.t1 AT3G50700 65.734 143 31 5 4 146 14 138 6.09e-54 184
MS.gene043579.t1 AT5G60470 60.135 148 44 3 16 157 23 161 3.56e-53 182
MS.gene043579.t1 AT5G60470 60.135 148 44 3 16 157 27 165 3.60e-53 182
MS.gene043579.t1 AT1G55110 70.339 118 26 1 29 146 60 168 1.07e-52 181
MS.gene043579.t1 AT1G55110 70.339 118 26 1 29 146 60 168 1.07e-52 181
MS.gene043579.t1 AT1G55110 70.339 118 26 1 29 146 60 168 1.07e-52 181
MS.gene043579.t1 AT5G66730 73.043 115 21 2 32 146 32 136 1.10e-52 182
MS.gene043579.t1 AT1G03840 72.414 116 22 2 31 146 40 145 1.12e-52 182
MS.gene043579.t1 AT4G02670 70.435 115 25 1 32 146 55 160 4.40e-52 178
MS.gene043579.t1 AT4G02670 70.435 115 25 1 32 146 53 158 4.62e-52 178
MS.gene043579.t1 AT1G03840 71.552 116 21 2 31 146 40 143 1.40e-51 179
MS.gene043579.t1 AT5G60470 69.643 112 29 1 51 157 45 156 5.63e-51 176
MS.gene043579.t1 AT5G44160 71.552 116 23 2 31 146 36 141 9.12e-51 176
MS.gene043579.t1 AT1G14580 68.696 115 26 2 32 146 53 157 7.66e-50 174
MS.gene043579.t1 AT1G14580 68.696 115 26 2 32 146 53 157 7.66e-50 174
MS.gene043579.t1 AT1G14580 68.696 115 26 2 32 146 67 171 1.10e-49 174
MS.gene043579.t1 AT2G02080 64.228 123 34 2 24 146 46 158 1.76e-49 174
MS.gene043579.t1 AT2G02080 64.228 123 34 2 24 146 46 158 1.76e-49 174
MS.gene043579.t1 AT2G02080 64.228 123 34 2 24 146 46 158 1.76e-49 174
MS.gene043579.t1 AT2G02080 64.228 123 34 2 24 146 46 158 1.76e-49 174
MS.gene043579.t1 AT2G02070 69.565 115 25 2 32 146 52 156 4.42e-48 172
MS.gene043579.t1 AT2G02070 69.565 115 25 2 32 146 52 156 4.42e-48 172
MS.gene043579.t1 AT5G44160 78.351 97 20 1 50 146 7 102 1.02e-47 167
MS.gene043579.t1 AT1G25250 52.985 134 42 3 22 143 12 136 6.28e-43 154
MS.gene043579.t1 AT1G68130 50.000 136 53 2 32 161 41 167 7.78e-41 149
MS.gene043579.t1 AT2G01940 53.846 117 45 1 27 143 39 146 1.08e-40 149
MS.gene043579.t1 AT2G01940 53.846 117 45 1 27 143 39 146 1.20e-40 149
MS.gene043579.t1 AT1G25250 54.701 117 46 2 52 161 21 137 1.21e-40 147
MS.gene043579.t1 AT2G02080 75.610 82 19 1 65 146 1 81 2.10e-39 145
MS.gene043579.t1 AT2G02080 75.610 82 19 1 65 146 1 81 2.10e-39 145
MS.gene043579.t1 AT1G25250 52.439 82 32 2 87 161 1 82 2.43e-20 90.9
MS.gene043579.t1 AT1G68130 50.617 81 34 1 87 161 1 81 1.19e-19 89.4
MS.gene043579.t1 AT2G01940 59.649 57 23 0 87 143 1 57 4.03e-18 85.1

Find 80 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTCCTCATGGTTTATT+TGG 0.044366 2.2:-7238544 MS.gene043579:CDS
CTCTTAACTGAATTTGAATT+AGG 0.133306 2.2:+7240087 None:intergenic
GATGAAAATGCACTAGAATT+TGG 0.245260 2.2:+7238436 None:intergenic
ATGATGAGGAATGTTATTAT+TGG 0.266493 2.2:+7238468 None:intergenic
TTTGGGCTTAATCCGGAATA+TGG 0.274534 2.2:-7238526 MS.gene043579:CDS
TCTTAACTGAATTTGAATTA+GGG 0.289041 2.2:+7240088 None:intergenic
CAAAAGATTGTTTCCAAAGT+TGG 0.290116 2.2:+7238588 None:intergenic
GACTTGGACATCCTTGTAAT+TGG 0.294387 2.2:+7238227 None:intergenic
AAGATTAGGGTTTGAGTTTG+AGG 0.302868 2.2:+7240116 None:intergenic
AACAACTTGCCTGGTGTTCC+TGG 0.316889 2.2:+7240051 None:intergenic
TCTGATACTTCCAACTTCAT+AGG 0.322296 2.2:-7240141 MS.gene043579:CDS
AAACCATGAGGAATATTTCT+TGG 0.325294 2.2:+7238550 None:intergenic
TTCGTTGTCATCAGTGATTT+TGG 0.328085 2.2:+7239881 None:intergenic
GAATTAGGGTTAGGAAGATT+AGG 0.332160 2.2:+7240102 None:intergenic
GTCGATGTAGCTGTAGGTTT+TGG 0.340159 2.2:+7239816 None:intergenic
ATATTCCTCATGGTTTATTT+GGG 0.341816 2.2:-7238543 MS.gene043579:CDS
TGATGAGGAATGTTATTATT+GGG 0.351177 2.2:+7238469 None:intergenic
AGAGCTCTAGGAGACCTAAC+AGG 0.354847 2.2:-7239686 MS.gene043579:CDS
TTAGACTTAGTCCACACTTT+TGG 0.355942 2.2:-7238394 MS.gene043579:CDS
TGACCTGGTCCACCATATTC+CGG 0.357076 2.2:+7238514 None:intergenic
AGAGCAATCACTTCTGAATC+TGG 0.369008 2.2:+7239908 None:intergenic
AATTAGGGTTAGGAAGATTA+GGG 0.370819 2.2:+7240103 None:intergenic
CCCATGAATGTTTCTTGACC+TGG 0.371869 2.2:+7238499 None:intergenic
ACTGAATTTGAATTAGGGTT+AGG 0.405640 2.2:+7240093 None:intergenic
TGGTTTATTTGGGCTTAATC+CGG 0.427189 2.2:-7238533 MS.gene043579:CDS
TTTCTTTGCTTAAGCTTCCA+TGG 0.433993 2.2:+7239779 None:intergenic
ACGAACTTGCAAAGTGAGTT+TGG 0.438218 2.2:-7237968 MS.gene043579:CDS
ACTAGAGATTTCCTTGGTGT+TGG 0.443089 2.2:-7238061 MS.gene043579:CDS
CCAGCAGTTATATCCAACTT+TGG 0.449389 2.2:-7238601 MS.gene043579:CDS
AAGTTCGTGACAGATTCTAT+TGG 0.449453 2.2:+7237983 None:intergenic
GAAACAAGCTGGAGGTGATA+AGG 0.453635 2.2:-7239760 MS.gene043579:CDS
CCAAAGTTGGATATAACTGC+TGG 0.453656 2.2:+7238601 None:intergenic
ATCAATGGTAATAATGATGC+TGG 0.454395 2.2:-7238166 MS.gene043579:CDS
TGCATACTTCGCACATGAAA+CGG 0.460596 2.2:+7239858 None:intergenic
TATTCTCACAACCAATTACA+AGG 0.462543 2.2:-7238238 MS.gene043579:CDS
GAAACATCATTTACAAGTAG+TGG 0.476541 2.2:-7238319 MS.gene043579:CDS
AAACATCATTTACAAGTAGT+GGG 0.483248 2.2:-7238318 MS.gene043579:CDS
AAAGATGATGTCTGAAGAAG+CGG 0.506812 2.2:-7240166 None:intergenic
AATTTCCAGCATGGTTACCT+TGG 0.507029 2.2:+7238107 None:intergenic
AGGTCTCCTAGAGCTCTACT+AGG 0.512555 2.2:+7239692 None:intergenic
TAATTCATCCATTGTCCTTG+TGG 0.512587 2.2:+7238364 None:intergenic
ACCAGGTCAAGAAACATTCA+TGG 0.517527 2.2:-7238500 MS.gene043579:CDS
GCTACAAATAAGCTTATCAA+TGG 0.520216 2.2:-7238181 MS.gene043579:CDS
TTCAACCAAGGTAACCATGC+TGG 0.522544 2.2:-7238112 MS.gene043579:CDS
TGCATTGTTGACACGTGACT+TGG 0.529889 2.2:+7238211 None:intergenic
AGCTTAACTAGAGATTTCCT+TGG 0.532854 2.2:-7238067 MS.gene043579:CDS
CTTCATTCAAATTTCCAGCA+TGG 0.536593 2.2:+7238098 None:intergenic
GTGGAAGGAAGTGCAAGAAT+AGG 0.537491 2.2:-7238631 MS.gene043579:intron
GTTTGAGGTGCCTATGAAGT+TGG 0.547630 2.2:+7240131 None:intergenic
GCTTAAGCAAAGAAACAAGC+TGG 0.547884 2.2:-7239771 MS.gene043579:CDS
ATATTTACATAGACAAAAGA+AGG 0.552400 2.2:+7240026 None:intergenic
CTAGAGCTCTACTAGGGTCG+TGG 0.553003 2.2:+7239699 None:intergenic
GCACCAAGAAATATTCCTCA+TGG 0.553675 2.2:-7238553 MS.gene043579:CDS
GTTTATTACCACAAGGACAA+TGG 0.558273 2.2:-7238372 MS.gene043579:CDS
AAGAAGGTGAACAACTTGCC+TGG 0.558756 2.2:+7240042 None:intergenic
GACGAGGACACAATCTTCCA+TGG 0.563267 2.2:-7239796 MS.gene043579:CDS
GCTGGAGGTGATAAGGAAGA+AGG 0.576782 2.2:-7239753 MS.gene043579:CDS
AGAAGTCTACCAGGAACACC+AGG 0.578443 2.2:-7240060 MS.gene043579:CDS
AATCCGGAATATGGTGGACC+AGG 0.578456 2.2:-7238517 MS.gene043579:CDS
GTTAAGAAATTGTTCAACCA+AGG 0.589203 2.2:-7238124 MS.gene043579:CDS
GGGCTTAATCCGGAATATGG+TGG 0.589866 2.2:-7238523 MS.gene043579:CDS
GATTCTATTGGATTGAACCT+AGG 0.597877 2.2:+7237995 None:intergenic
GTCCTCGTCGATGTAGCTGT+AGG 0.600070 2.2:+7239810 None:intergenic
TATCATCTCTTGTTGCAACA+AGG 0.605854 2.2:+7238018 None:intergenic
ATGTGCGAAGTATGCAACAA+GGG 0.607407 2.2:-7239851 MS.gene043579:CDS
TTTGGAAGATAACTATGATG+AGG 0.609010 2.2:+7238454 None:intergenic
CACGACCCTAGTAGAGCTCT+AGG 0.610279 2.2:-7239698 MS.gene043579:CDS
AACTTGCAAAGTGAGTTTGG+TGG 0.611112 2.2:-7237965 MS.gene043579:CDS
GAGCTCTAGGAGACCTAACA+GGG 0.614836 2.2:-7239685 MS.gene043579:CDS
GGTCTCCTAGAGCTCTACTA+GGG 0.619368 2.2:+7239693 None:intergenic
CCAGGTCAAGAAACATTCAT+GGG 0.622229 2.2:-7238499 MS.gene043579:CDS
CATGTGCGAAGTATGCAACA+AGG 0.622893 2.2:-7239852 MS.gene043579:CDS
GTGGTAATAAACCAAAAGTG+TGG 0.631454 2.2:+7238383 None:intergenic
AACATCATTTACAAGTAGTG+GGG 0.641231 2.2:-7238317 MS.gene043579:CDS
AAGCACTTCAGTAGAAAGCA+CGG 0.647178 2.2:-7239656 MS.gene043579:intron
TGCAACAAGAGATGATACCT+AGG 0.687869 2.2:-7238012 MS.gene043579:CDS
ATGAGTCATCTCCAACACCA+AGG 0.689337 2.2:+7238050 None:intergenic
TTAAGCCCAAATAAACCATG+AGG 0.695340 2.2:+7238538 None:intergenic
TAAGCAAAGAAACAAGCTGG+AGG 0.718484 2.2:-7239768 MS.gene043579:CDS
AACCTACAGCTACATCGACG+AGG 0.721645 2.2:-7239812 MS.gene043579:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAATCACATATTTTTT+TGG - chr2.2:7239201-7239220 MS.gene043579:intron 10.0%
!!! ATAAACAAAATTCATTTTTT+AGG + chr2.2:7238896-7238915 None:intergenic 10.0%
!!! ATTTTGTTTATATTTTGAAA+CGG - chr2.2:7238905-7238924 MS.gene043579:intron 10.0%
!! ACAAAAAATAATTAACAAAG+TGG + chr2.2:7239404-7239423 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG + chr2.2:7238798-7238817 None:intergenic 15.0%
!! ATATTAAACATCCGTATATT+TGG - chr2.2:7238745-7238764 MS.gene043579:intron 20.0%
!! ATATTTACATAGACAAAAGA+AGG + chr2.2:7238094-7238113 None:intergenic 20.0%
!! TCTTAACTGAATTTGAATTA+GGG + chr2.2:7238032-7238051 None:intergenic 20.0%
!!! AATAATTTTGAGAGTATGAT+AGG - chr2.2:7239377-7239396 MS.gene043579:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG - chr2.2:7238807-7238826 MS.gene043579:intron 20.0%
!!! TAAAGTTTGTTATGAATTCA+CGG - chr2.2:7238651-7238670 MS.gene043579:intron 20.0%
!!! TGTTGTTATTTCCAAATATA+CGG + chr2.2:7238759-7238778 None:intergenic 20.0%
! AAACATCATTTACAAGTAGT+GGG - chr2.2:7239799-7239818 MS.gene043579:CDS 25.0%
! AATATTCCTCATGGTTTATT+TGG - chr2.2:7239573-7239592 MS.gene043579:intron 25.0%
! ATATTCCTCATGGTTTATTT+GGG - chr2.2:7239574-7239593 MS.gene043579:intron 25.0%
! ATGATGAGGAATGTTATTAT+TGG + chr2.2:7239652-7239671 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG - chr2.2:7238832-7238851 MS.gene043579:intron 25.0%
! CATTCATTTAATGATGTATG+TGG + chr2.2:7238851-7238832 None:intergenic 25.0%
! CTCTTAACTGAATTTGAATT+AGG + chr2.2:7238033-7238052 None:intergenic 25.0%
! TGATGAGGAATGTTATTATT+GGG + chr2.2:7239651-7239670 None:intergenic 25.0%
! TTGTAACTTTGACAAAATCA+GGG - chr2.2:7238707-7238726 MS.gene043579:intron 25.0%
! TTTGTAACTTTGACAAAATC+AGG - chr2.2:7238706-7238725 MS.gene043579:intron 25.0%
!! TAGCTTTTACAGAATCAAAA+TGG + chr2.2:7238681-7238700 None:intergenic 25.0%
!!! TGTTTATATTTTGAAACGGA+GGG - chr2.2:7238909-7238928 MS.gene043579:intron 25.0%
!!! TTGTTTATATTTTGAAACGG+AGG - chr2.2:7238908-7238927 MS.gene043579:intron 25.0%
AAACCATGAGGAATATTTCT+TGG + chr2.2:7239570-7239589 None:intergenic 30.0%
AACATCATTTACAAGTAGTG+GGG - chr2.2:7239800-7239819 MS.gene043579:CDS 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr2.2:7238519-7238538 MS.gene043579:CDS 30.0%
AATTAGGGTTAGGAAGATTA+GGG + chr2.2:7238017-7238036 None:intergenic 30.0%
ACTGAATTTGAATTAGGGTT+AGG + chr2.2:7238027-7238046 None:intergenic 30.0%
ATCAATGGTAATAATGATGC+TGG - chr2.2:7239951-7239970 MS.gene043579:intron 30.0%
CAAAAGATTGTTTCCAAAGT+TGG + chr2.2:7239532-7239551 None:intergenic 30.0%
CTCATTCCAATTAATGAAGT+GGG - chr2.2:7239123-7239142 MS.gene043579:intron 30.0%
GAAACATCATTTACAAGTAG+TGG - chr2.2:7239798-7239817 MS.gene043579:CDS 30.0%
GATCTAAACATGCATTTAAG+AGG - chr2.2:7238973-7238992 MS.gene043579:intron 30.0%
GATGAAAATGCACTAGAATT+TGG + chr2.2:7239684-7239703 None:intergenic 30.0%
GATGTATGTGGTTCATAATA+TGG - chr2.2:7238844-7238863 MS.gene043579:intron 30.0%
GCTACAAATAAGCTTATCAA+TGG - chr2.2:7239936-7239955 MS.gene043579:intron 30.0%
GTTAAGAAATTGTTCAACCA+AGG - chr2.2:7239993-7240012 MS.gene043579:intron 30.0%
TAAGCATGAGATTAATGCAA+AGG + chr2.2:7239178-7239197 None:intergenic 30.0%
TATTCTCACAACCAATTACA+AGG - chr2.2:7239879-7239898 MS.gene043579:CDS 30.0%
TCTAATCCCACTTCATTAAT+TGG + chr2.2:7239132-7239151 None:intergenic 30.0%
TCTCATTCCAATTAATGAAG+TGG - chr2.2:7239122-7239141 MS.gene043579:intron 30.0%
TTTGGAAGATAACTATGATG+AGG + chr2.2:7239666-7239685 None:intergenic 30.0%
! TTCTAGTGCATTTTCATCAT+CGG - chr2.2:7239686-7239705 MS.gene043579:CDS 30.0%
!!! ACTTTTGGTTTATTACCACA+AGG - chr2.2:7239738-7239757 MS.gene043579:CDS 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG + chr2.2:7238794-7238813 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG + chr2.2:7238795-7238814 None:intergenic 30.0%
AAGAGAAAAAGAAGTCTACC+AGG - chr2.2:7238048-7238067 MS.gene043579:CDS 35.0%
AAGGCTCATAGTAAGATTTG+TGG - chr2.2:7238542-7238561 MS.gene043579:CDS 35.0%
AAGTTCGTGACAGATTCTAT+TGG + chr2.2:7240137-7240156 None:intergenic 35.0%
AGCTTAACTAGAGATTTCCT+TGG - chr2.2:7240050-7240069 MS.gene043579:CDS 35.0%
CGGATGTTTAATATAACCGT+CGG + chr2.2:7238739-7238758 None:intergenic 35.0%
CTTCATTCAAATTTCCAGCA+TGG + chr2.2:7240022-7240041 None:intergenic 35.0%
GAATTAGGGTTAGGAAGATT+AGG + chr2.2:7238018-7238037 None:intergenic 35.0%
GATCTAAACATGCACTTAAG+AGG - chr2.2:7239037-7239056 MS.gene043579:intron 35.0%
GATTCTATTGGATTGAACCT+AGG + chr2.2:7240125-7240144 None:intergenic 35.0%
GTGGTAATAAACCAAAAGTG+TGG + chr2.2:7239737-7239756 None:intergenic 35.0%
GTTTATTACCACAAGGACAA+TGG - chr2.2:7239745-7239764 MS.gene043579:CDS 35.0%
TAATTCATCCATTGTCCTTG+TGG + chr2.2:7239756-7239775 None:intergenic 35.0%
TATCATCTCTTGTTGCAACA+AGG + chr2.2:7240102-7240121 None:intergenic 35.0%
TCTACTACACGATTTAACCA+GGG - chr2.2:7238996-7239015 MS.gene043579:intron 35.0%
TCTGATACTTCCAACTTCAT+AGG - chr2.2:7237976-7237995 MS.gene043579:CDS 35.0%
TGGTTTATTTGGGCTTAATC+CGG - chr2.2:7239584-7239603 MS.gene043579:intron 35.0%
TGTGTGATGATTGACAAATC+AGG - chr2.2:7239421-7239440 MS.gene043579:intron 35.0%
TTAAGCCCAAATAAACCATG+AGG + chr2.2:7239582-7239601 None:intergenic 35.0%
TTTCTTTGCTTAAGCTTCCA+TGG + chr2.2:7238341-7238360 None:intergenic 35.0%
! AAAGAGTACAGATGTGATTG+TGG - chr2.2:7238569-7238588 MS.gene043579:CDS 35.0%
! AAGATTAGGGTTTGAGTTTG+AGG + chr2.2:7238004-7238023 None:intergenic 35.0%
! TCTAGTGCATTTTCATCATC+GGG - chr2.2:7239687-7239706 MS.gene043579:CDS 35.0%
! TTAGACTTAGTCCACACTTT+TGG - chr2.2:7239723-7239742 MS.gene043579:CDS 35.0%
! TTCGTTGTCATCAGTGATTT+TGG + chr2.2:7238239-7238258 None:intergenic 35.0%
!!! AGTGCTTTTTTATCCCTGTT+AGG + chr2.2:7238448-7238467 None:intergenic 35.0%
AACTTGCAAAGTGAGTTTGG+TGG - chr2.2:7240152-7240171 MS.gene043579:CDS 40.0%
AAGACAGCTTCTTAACTCAC+AGG - chr2.2:7239445-7239464 MS.gene043579:intron 40.0%
AAGCACTTCAGTAGAAAGCA+CGG - chr2.2:7238461-7238480 MS.gene043579:CDS 40.0%
AATTTCCAGCATGGTTACCT+TGG + chr2.2:7240013-7240032 None:intergenic 40.0%
ACAATGATCATTTGACACCC+TGG + chr2.2:7239016-7239035 None:intergenic 40.0%
ACCAGGTCAAGAAACATTCA+TGG - chr2.2:7239617-7239636 MS.gene043579:intron 40.0%
ACGAACTTGCAAAGTGAGTT+TGG - chr2.2:7240149-7240168 MS.gene043579:CDS 40.0%
AGACAGCTTCTTAACTCACA+GGG - chr2.2:7239446-7239465 MS.gene043579:intron 40.0%
AGAGCAATCACTTCTGAATC+TGG + chr2.2:7238212-7238231 None:intergenic 40.0%
ATGTGCGAAGTATGCAACAA+GGG - chr2.2:7238266-7238285 MS.gene043579:CDS 40.0%
CCAAAGTTGGATATAACTGC+TGG + chr2.2:7239519-7239538 None:intergenic 40.0%
CCAGCAGTTATATCCAACTT+TGG - chr2.2:7239516-7239535 MS.gene043579:intron 40.0%
CCAGGTCAAGAAACATTCAT+GGG - chr2.2:7239618-7239637 MS.gene043579:intron 40.0%
GACTTGGACATCCTTGTAAT+TGG + chr2.2:7239893-7239912 None:intergenic 40.0%
GAGTTCACTGTACAGAATCA+CGG + chr2.2:7239340-7239359 None:intergenic 40.0%
GCACCAAGAAATATTCCTCA+TGG - chr2.2:7239564-7239583 MS.gene043579:intron 40.0%
GCTTAAGCAAAGAAACAAGC+TGG - chr2.2:7238346-7238365 MS.gene043579:CDS 40.0%
GTCTACTACACGATTTAACC+AGG - chr2.2:7238995-7239014 MS.gene043579:intron 40.0%
TAAGCAAAGAAACAAGCTGG+AGG - chr2.2:7238349-7238368 MS.gene043579:CDS 40.0%
TGCAACAAGAGATGATACCT+AGG - chr2.2:7240105-7240124 MS.gene043579:CDS 40.0%
TGCAGTTCAATCTGATTGGA+AGG - chr2.2:7238523-7238542 MS.gene043579:CDS 40.0%
TGCATACTTCGCACATGAAA+CGG + chr2.2:7238262-7238281 None:intergenic 40.0%
TTTGGGCTTAATCCGGAATA+TGG - chr2.2:7239591-7239610 MS.gene043579:intron 40.0%
! ACTAGAGATTTCCTTGGTGT+TGG - chr2.2:7240056-7240075 MS.gene043579:CDS 40.0%
AAGAAGGTGAACAACTTGCC+TGG + chr2.2:7238078-7238097 None:intergenic 45.0%
ATGAGTCATCTCCAACACCA+AGG + chr2.2:7240070-7240089 None:intergenic 45.0%
ATTGTGGCACACTATTCTCC+AGG - chr2.2:7238585-7238604 MS.gene043579:CDS 45.0%
CATGTGCGAAGTATGCAACA+AGG - chr2.2:7238265-7238284 MS.gene043579:CDS 45.0%
CCCATGAATGTTTCTTGACC+TGG + chr2.2:7239621-7239640 None:intergenic 45.0%
GAAACAAGCTGGAGGTGATA+AGG - chr2.2:7238357-7238376 MS.gene043579:CDS 45.0%
GTGCATCATGCTTGTATACC+TGG + chr2.2:7238606-7238625 None:intergenic 45.0%
TGCATTGTTGACACGTGACT+TGG + chr2.2:7239909-7239928 None:intergenic 45.0%
TTCAACCAAGGTAACCATGC+TGG - chr2.2:7240005-7240024 MS.gene043579:intron 45.0%
TTCCACCAAGGATTCACAGA+AGG + chr2.2:7239472-7239491 None:intergenic 45.0%
TTCTGTGAATCCTTGGTGGA+AGG - chr2.2:7239471-7239490 MS.gene043579:intron 45.0%
! AAAATCAGGGTGTCAACCGA+CGG - chr2.2:7238720-7238739 MS.gene043579:intron 45.0%
! GTCGATGTAGCTGTAGGTTT+TGG + chr2.2:7238304-7238323 None:intergenic 45.0%
! GTGGAAGGAAGTGCAAGAAT+AGG - chr2.2:7239486-7239505 MS.gene043579:intron 45.0%
! GTTTGAGGTGCCTATGAAGT+TGG + chr2.2:7237989-7238008 None:intergenic 45.0%
AACAACTTGCCTGGTGTTCC+TGG + chr2.2:7238069-7238088 None:intergenic 50.0%
AACCTACAGCTACATCGACG+AGG - chr2.2:7238305-7238324 MS.gene043579:CDS 50.0%
AGAAGTCTACCAGGAACACC+AGG - chr2.2:7238057-7238076 MS.gene043579:CDS 50.0%
AGGTCTCCTAGAGCTCTACT+AGG + chr2.2:7238428-7238447 None:intergenic 50.0%
CTGAATCTGGATCTGCAGCA+TGG + chr2.2:7238199-7238218 None:intergenic 50.0%
GACGAGGACACAATCTTCCA+TGG - chr2.2:7238321-7238340 MS.gene043579:CDS 50.0%
GCTGGAGGTGATAAGGAAGA+AGG - chr2.2:7238364-7238383 MS.gene043579:CDS 50.0%
GGGCTTAATCCGGAATATGG+TGG - chr2.2:7239594-7239613 MS.gene043579:intron 50.0%
GGTCTCCTAGAGCTCTACTA+GGG + chr2.2:7238427-7238446 None:intergenic 50.0%
TCTTGCACTTCCTTCCACCA+AGG + chr2.2:7239484-7239503 None:intergenic 50.0%
TGACCTGGTCCACCATATTC+CGG + chr2.2:7239606-7239625 None:intergenic 50.0%
! GAAAGCACGGTGAGAAGAAG+TGG - chr2.2:7238474-7238493 MS.gene043579:CDS 50.0%
!! AATCCGGAATATGGTGGACC+AGG - chr2.2:7239600-7239619 MS.gene043579:intron 50.0%
!! AGAGCTCTAGGAGACCTAAC+AGG - chr2.2:7238431-7238450 MS.gene043579:CDS 50.0%
!! GAGCTCTAGGAGACCTAACA+GGG - chr2.2:7238432-7238451 MS.gene043579:CDS 50.0%
CACGACCCTAGTAGAGCTCT+AGG - chr2.2:7238419-7238438 MS.gene043579:CDS 55.0%
CAGGGCCTTCTGTGAATCCT+TGG - chr2.2:7239464-7239483 MS.gene043579:intron 55.0%
CTAGAGCTCTACTAGGGTCG+TGG + chr2.2:7238421-7238440 None:intergenic 55.0%
GGCCTTCTGTGAATCCTTGG+TGG - chr2.2:7239467-7239486 MS.gene043579:intron 55.0%
GTCCTCGTCGATGTAGCTGT+AGG + chr2.2:7238310-7238329 None:intergenic 55.0%
! TGGTGCACGCAGCTCTTTTC+TGG + chr2.2:7238401-7238420 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 7237955 7240184 7237955 ID=MS.gene043579
chr2.2 mRNA 7237955 7240184 7237955 ID=MS.gene043579.t1;Parent=MS.gene043579
chr2.2 exon 7240034 7240184 7240034 ID=MS.gene043579.t1.exon1;Parent=MS.gene043579.t1
chr2.2 CDS 7240034 7240184 7240034 ID=cds.MS.gene043579.t1;Parent=MS.gene043579.t1
chr2.2 exon 7239657 7239932 7239657 ID=MS.gene043579.t1.exon2;Parent=MS.gene043579.t1
chr2.2 CDS 7239657 7239932 7239657 ID=cds.MS.gene043579.t1;Parent=MS.gene043579.t1
chr2.2 exon 7237955 7238646 7237955 ID=MS.gene043579.t1.exon3;Parent=MS.gene043579.t1
chr2.2 CDS 7237955 7238646 7237955 ID=cds.MS.gene043579.t1;Parent=MS.gene043579.t1
Gene Sequence

>MS.gene043579

ATGATGTCTGAAGAAGCGGTTTCTGATACTTCCAACTTCATAGGCACCTCAAACTCAAACCCTAATCTTCCTAACCCTAATTCAAATTCAGTTAAGAGAAAAAGAAGTCTACCAGGAACACCAGGCAAGTTGTTCACCTTCTTTTGTCTATGTAAATATTTTAAATATATTAGCATAGATTTTTAATATTAAATTTTGTGAAAAACATTGATGAATTCTTTCTTAATTAACAAATAAATGACCATGCTGCAGATCCAGATTCAGAAGTGATTGCTCTATCACCAAAATCACTGATGACAACGAACCGTTTCATGTGCGAAGTATGCAACAAGGGTTTCAAGAGAGACCAAAACCTACAGCTACATCGACGAGGACACAATCTTCCATGGAAGCTTAAGCAAAGAAACAAGCTGGAGGTGATAAGGAAGAAGGTGTACGTGTGTCCAGAAAAGAGCTGCGTGCACCACGACCCTAGTAGAGCTCTAGGAGACCTAACAGGGATAAAAAAGCACTTCAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGCACTAAAGAGTACAGATGTGATTGTGGCACACTATTCTCCAGGTATACAAGCATGATGCACTATTTAGTGCTTGTTTGATATCACATAAAGTTTGTTATGAATTCACGGTGAGCCATTTTGATTCTGTAAAAGCTACACTTTTTGTAACTTTGACAAAATCAGGGTGTCAACCGACGGTTATATTAAACATCCGTATATTTGGAAATAACAACATTGAACAGTACTCCCTCCGTTTCAAAATATAAGCAAAATTCACTTTTTAGGTTCATTCATTTAATGATGTATGTGGTTCATAATATGGACCACATACATCATTAAATGAATGAACCTAAAAAATGAATTTTGTTTATATTTTGAAACGGAGGGAGTAACATATTGTTGATACTTTTGTAAAAAATATCATTGTCGATCTAAACATGCATTTAAGAGGTCTACTACACGATTTAACCAGGGTGTCAAATGATCATTGTCGATCTAAACATGCACTTAAGAGGTCTAATATTGCACGATAATTTTGCAATAACTTTACAATATCTATATTTCATTCGATTTTTTTTCTCATTCCAATTAATGAAGTGGGATTAGATTATATAACAGATTTAATTCTTGCCTTTGCATTAATCTCATGCTTAGTCAATTTAATCACATATTTTTTTGGTATAAATAAATTGATATTCTGCACGCATCTAGTTGCATGTTTTGAATCAAGCTGAGTTCGATTTGTTGACGCGCAAAAATGCATTTATTTTCTTTCAAAATTACAGTGACACACCGTGATTCTGTACAGTGAACTCTTGCACTCTAGACATGTAATAATTTTGAGAGTATGATAGGACCACTTTGTTAATTATTTTTTGTGTGATGATTGACAAATCAGGAAAGACAGCTTCTTAACTCACAGGGCCTTCTGTGAATCCTTGGTGGAAGGAAGTGCAAGAATAGGTTCAGTTCCAGCAGTTATATCCAACTTTGGAAACAATCTTTTGATCAACACTCAAGCACCAAGAAATATTCCTCATGGTTTATTTGGGCTTAATCCGGAATATGGTGGACCAGGTCAAGAAACATTCATGGGAAATTTTCCCAATAATAACATTCCTCATCATAGTTATCTTCCAAATTCTAGTGCATTTTCATCATCGGGAACAAACTCTGATTTAGACTTAGTCCACACTTTTGGTTTATTACCACAAGGACAATGGATGAATTACAAATACAATGATCAACATGCAGAAACATCATTTACAAGTAGTGGGGTTCTAAAGCTAGAACAACAACAAGAAGAAGACAAAATGCATGATTTGTCTCATTTATATTCTCACAACCAATTACAAGGATGTCCAAGTCACGTGTCAACAATGCAAACTACAGCTACAAATAAGCTTATCAATGGTAATAATGATGCTGGTTTCAATAATATTGTTGAAGTTAAGAAATTGTTCAACCAAGGTAACCATGCTGGAAATTTGAATGAAGATCAGTTGAGCTTAACTAGAGATTTCCTTGGTGTTGGAGATGACTCATTGAAGAGAACCTTGTTGCAACAAGAGATGATACCTAGGTTCAATCCAATAGAATCTGTCACGAACTTGCAAAGTGAGTTTGGTGGACACTATTGA
Protein sequence

>MS.gene043579.t1

MMSEEAVSDTSNFIGTSNSNPNLPNPNSNSVKRKRSLPGTPGKLFTFFCLYPDSEVIALSPKSLMTTNRFMCEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNKLEVIRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGSARIGSVPAVISNFGNNLLINTQAPRNIPHGLFGLNPEYGGPGQETFMGNFPNNNIPHHSYLPNSSAFSSSGTNSDLDLVHTFGLLPQGQWMNYKYNDQHAETSFTSSGVLKLEQQQEEDKMHDLSHLYSHNQLQGCPSHVSTMQTTATNKLINGNNDAGFNNIVEVKKLFNQGNHAGNLNEDQLSLTRDFLGVGDDSLKRTLLQQEMIPRFNPIESVTNLQSEFGGHY