Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043630.t1 | XP_013459813.1 | 97.7 | 220 | 5 | 0 | 1 | 220 | 1 | 220 | 2.30E-126 | 461.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043630.t1 | A0A072UVJ3 | 97.7 | 220 | 5 | 0 | 1 | 220 | 1 | 220 | 1.6e-126 | 461.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043630.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043630.t1 | MTR_3g052770 | 97.727 | 220 | 5 | 0 | 1 | 220 | 1 | 220 | 3.99e-165 | 456 |
| MS.gene043630.t1 | MTR_4g104230 | 59.447 | 217 | 86 | 1 | 4 | 218 | 6 | 222 | 2.55e-96 | 282 |
| MS.gene043630.t1 | MTR_4g104230 | 59.633 | 218 | 85 | 1 | 4 | 218 | 6 | 223 | 6.61e-96 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043630.t1 | AT5G63280 | 62.500 | 192 | 70 | 1 | 29 | 218 | 26 | 217 | 3.50e-92 | 271 |
| MS.gene043630.t1 | AT5G40710 | 65.143 | 175 | 61 | 0 | 43 | 217 | 44 | 218 | 1.60e-88 | 262 |
| MS.gene043630.t1 | AT5G40710 | 64.706 | 153 | 54 | 0 | 43 | 195 | 44 | 196 | 1.89e-75 | 228 |
Find 42 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTCCAATTTACTTAATT+TGG | 0.122652 | 3.2:-45013055 | MS.gene043630:intron |
| AATGTTATTGTTCAGAATTC+TGG | 0.162180 | 3.2:-45013473 | MS.gene043630:intron |
| AAGAACAATGAATAAGATTT+TGG | 0.184207 | 3.2:-45014416 | None:intergenic |
| TCATACCAAATTAAGTAAAT+TGG | 0.245660 | 3.2:+45013050 | None:intergenic |
| TGTGACCATGAAATTAATTC+TGG | 0.266563 | 3.2:-45011437 | MS.gene043630:CDS |
| CCTGCAGCGAGCCGGCTTCA+TGG | 0.327309 | 3.2:-45011246 | MS.gene043630:intron |
| GCTGCAGGACCCTCGTTAAC+TGG | 0.349350 | 3.2:+45011261 | None:intergenic |
| TTGACCCAGAATTAATTTCA+TGG | 0.350995 | 3.2:+45011432 | None:intergenic |
| TCGTGTTCTTGTTGCTTACA+AGG | 0.379404 | 3.2:-45014375 | MS.gene043630:CDS |
| TCAAATTACCCTGCGCCCTC+TGG | 0.382051 | 3.2:+45011076 | None:intergenic |
| TTATTTCTTGCTGCAGCAGC+AGG | 0.412858 | 3.2:+45011392 | None:intergenic |
| TCTCTATATATATCATTGTC+AGG | 0.427562 | 3.2:+45013183 | None:intergenic |
| ATTGTTCAGAATTCTGGATC+AGG | 0.460914 | 3.2:-45013467 | MS.gene043630:intron |
| CCATGAAGCCGGCTCGCTGC+AGG | 0.478890 | 3.2:+45011246 | None:intergenic |
| GCAGTATTTGACGACATTTG+TGG | 0.483411 | 3.2:-45013247 | MS.gene043630:intron |
| GAGAAAGAAGTAGAATAGCT+TGG | 0.485109 | 3.2:-45013411 | MS.gene043630:CDS |
| TGTGATGCTCACACCTGCAC+TGG | 0.492800 | 3.2:-45011116 | MS.gene043630:CDS |
| GTGACCATGAAATTAATTCT+GGG | 0.499220 | 3.2:-45011436 | MS.gene043630:CDS |
| GCTCACACCTGCACTGGACG+TGG | 0.502873 | 3.2:-45011110 | MS.gene043630:CDS |
| AGGCTTTCCACGTCCAGTGC+AGG | 0.511555 | 3.2:+45011103 | None:intergenic |
| CTCATATAGATATAAATGAA+TGG | 0.514723 | 3.2:-45013143 | MS.gene043630:CDS |
| CAATGATATATATAGAGATC+AGG | 0.516644 | 3.2:-45013178 | MS.gene043630:CDS |
| ACCCTGCGCCCTCTGGAGAA+AGG | 0.523388 | 3.2:+45011083 | None:intergenic |
| AGCCTTTCTCCAGAGGGCGC+AGG | 0.526816 | 3.2:-45011085 | MS.gene043630:CDS |
| ACGAGGGTCCTGCAGCGAGC+CGG | 0.531828 | 3.2:-45011254 | MS.gene043630:CDS |
| ATAATATCTCAAGAAGGTGC+AGG | 0.547108 | 3.2:-45013212 | MS.gene043630:CDS |
| GCCTTTCTCCAGAGGGCGCA+GGG | 0.563120 | 3.2:-45011084 | MS.gene043630:CDS |
| TGGAAAACAACTATCAGCTA+TGG | 0.566317 | 3.2:+45011281 | None:intergenic |
| CACATACATCTGCTAAGCAC+CGG | 0.569311 | 3.2:+45011471 | None:intergenic |
| CTCTATATATATCATTGTCA+GGG | 0.590660 | 3.2:+45013184 | None:intergenic |
| ATATTGAAATACCATGAAGC+CGG | 0.593494 | 3.2:+45011235 | None:intergenic |
| TTGCAGCATCTGAATCTACA+TGG | 0.597085 | 3.2:+45013890 | None:intergenic |
| CGGTGCTTAGCAGATGTATG+TGG | 0.600256 | 3.2:-45011470 | MS.gene043630:CDS |
| ATGTAGATTCAGATGCTGCA+AGG | 0.607887 | 3.2:-45013888 | MS.gene043630:intron |
| CGTGGAAAGCCTTTCTCCAG+AGG | 0.614403 | 3.2:-45011092 | MS.gene043630:CDS |
| AGCTTGGAAGATCGTTCAAG+AGG | 0.626181 | 3.2:-45013395 | MS.gene043630:intron |
| AAGAAATAAGCATATATGTG+AGG | 0.634147 | 3.2:-45011378 | MS.gene043630:intron |
| GTGGAAAGCCTTTCTCCAGA+GGG | 0.645090 | 3.2:-45011091 | MS.gene043630:CDS |
| GCTGAATCCAGAAAGAAAGC+CGG | 0.646951 | 3.2:-45011490 | MS.gene043630:intron |
| GATATAAATGAATGGCAGTG+TGG | 0.647971 | 3.2:-45013135 | MS.gene043630:CDS |
| ATACTTACATCATCAGTGTG+TGG | 0.676932 | 3.2:+45014340 | None:intergenic |
| ATTCTGGATCAGGAGCAGAG+TGG | 0.757422 | 3.2:-45013457 | MS.gene043630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTCTTTTAAAATTTCT+AGG | + | chr3.2:45013815-45013834 | None:intergenic | 10.0% |
| !!! | AGAAATTAGAATATAATTTT+AGG | + | chr3.2:45014169-45014188 | None:intergenic | 10.0% |
| !!! | ATAATAATTTTAGAAAATAG+AGG | + | chr3.2:45013383-45013402 | None:intergenic | 10.0% |
| !!! | CTATTTTCTAAAATTATTAT+TGG | - | chr3.2:45013383-45013402 | MS.gene043630:intron | 10.0% |
| !!! | GAAATTTTAAAAGAATTTTA+AGG | - | chr3.2:45013816-45013835 | MS.gene043630:intron | 10.0% |
| !! | AAAAATATAATATCTCAAGA+AGG | - | chr3.2:45012267-45012286 | MS.gene043630:intron | 15.0% |
| !! | TAAATATCATTGTTTAAACT+AGG | - | chr3.2:45013721-45013740 | MS.gene043630:intron | 15.0% |
| !!! | AAAATATTTTTACCTTTTCT+TGG | - | chr3.2:45011938-45011957 | MS.gene043630:intron | 15.0% |
| !!! | ATTAATATGGTTATTTTATG+AGG | - | chr3.2:45012624-45012643 | MS.gene043630:intron | 15.0% |
| !!! | TAAAATTGTATTGATTCTAT+TGG | + | chr3.2:45012471-45012490 | None:intergenic | 15.0% |
| !! | ACATATAACAATTGAAACAA+AGG | + | chr3.2:45011411-45011430 | None:intergenic | 20.0% |
| !! | ACTAGTTATTTGATCAAAAA+TGG | + | chr3.2:45012503-45012522 | None:intergenic | 20.0% |
| !! | ATATTAATAGTGAAAACATG+TGG | + | chr3.2:45013154-45013173 | None:intergenic | 20.0% |
| !! | ATTAACTATATCATGAATGA+TGG | + | chr3.2:45012582-45012601 | None:intergenic | 20.0% |
| !! | CTCATATAGATATAAATGAA+TGG | - | chr3.2:45012342-45012361 | MS.gene043630:intron | 20.0% |
| !! | TCAATTTCTTTACTTATTAG+TGG | + | chr3.2:45011844-45011863 | None:intergenic | 20.0% |
| !! | TCATACCAAATTAAGTAAAT+TGG | + | chr3.2:45012438-45012457 | None:intergenic | 20.0% |
| !! | TTGCAGAATTTGTATATTTA+TGG | - | chr3.2:45014286-45014305 | MS.gene043630:intron | 20.0% |
| !! | TTGTATTAGATTGAAGTAAT+CGG | - | chr3.2:45012552-45012571 | MS.gene043630:intron | 20.0% |
| !!! | AAATTTGCTGAATTTAATCA+TGG | - | chr3.2:45011259-45011278 | MS.gene043630:CDS | 20.0% |
| !!! | AATTTGCTGAATTTAATCAT+GGG | - | chr3.2:45011260-45011279 | MS.gene043630:CDS | 20.0% |
| !!! | ATTTTTGTACTTGAGAAAAA+TGG | - | chr3.2:45011376-45011395 | MS.gene043630:intron | 20.0% |
| !!! | TTAAAATTTCTAGGTCAATA+GGG | + | chr3.2:45013806-45013825 | None:intergenic | 20.0% |
| !!! | TTATATGTAGATGTTTTCTT+TGG | - | chr3.2:45011423-45011442 | MS.gene043630:CDS | 20.0% |
| !!! | TTTAAAATTTCTAGGTCAAT+AGG | + | chr3.2:45013807-45013826 | None:intergenic | 20.0% |
| !!! | TTTTTGATCAAATAACTAGT+TGG | - | chr3.2:45012503-45012522 | MS.gene043630:intron | 20.0% |
| !!! | TTTTTGTACTTGAGAAAAAT+GGG | - | chr3.2:45011377-45011396 | MS.gene043630:intron | 20.0% |
| ! | AAATAGGAGTTGAATTGAAT+TGG | - | chr3.2:45011300-45011319 | MS.gene043630:intron | 25.0% |
| ! | AACTAATTAACAACAGTGTT+GGG | - | chr3.2:45012898-45012917 | MS.gene043630:intron | 25.0% |
| ! | AAGAAATAAGCATATATGTG+AGG | - | chr3.2:45014107-45014126 | MS.gene043630:intron | 25.0% |
| ! | AATGTTATTGTTCAGAATTC+TGG | - | chr3.2:45012012-45012031 | MS.gene043630:intron | 25.0% |
| ! | ACACTCCAATTTACTTAATT+TGG | - | chr3.2:45012430-45012449 | MS.gene043630:intron | 25.0% |
| ! | AGAATTCTGTCAAATTGTTA+AGG | + | chr3.2:45014335-45014354 | None:intergenic | 25.0% |
| ! | AGGAGAAAAATGCAAAAATT+TGG | + | chr3.2:45011525-45011544 | None:intergenic | 25.0% |
| ! | ATGTTCTTAAATATTAGGCT+TGG | + | chr3.2:45013545-45013564 | None:intergenic | 25.0% |
| ! | ATTTCTCACCAAAAGAAAAA+TGG | + | chr3.2:45011243-45011262 | None:intergenic | 25.0% |
| ! | CAAGCATGTTCTTAAATATT+AGG | + | chr3.2:45013550-45013569 | None:intergenic | 25.0% |
| ! | CAATGATATATATAGAGATC+AGG | - | chr3.2:45012307-45012326 | MS.gene043630:intron | 25.0% |
| ! | CTCTATATATATCATTGTCA+GGG | + | chr3.2:45012304-45012323 | None:intergenic | 25.0% |
| ! | GAAATTGAATGTAGCTATAT+AGG | - | chr3.2:45011856-45011875 | MS.gene043630:intron | 25.0% |
| ! | GATGATTCTATTATCATCAA+TGG | - | chr3.2:45011710-45011729 | MS.gene043630:intron | 25.0% |
| ! | TACTTCAATCTAATACAAAC+TGG | + | chr3.2:45012550-45012569 | None:intergenic | 25.0% |
| ! | TATCCAATATTGATGTATGT+CGG | + | chr3.2:45012179-45012198 | None:intergenic | 25.0% |
| ! | TCTCTATATATATCATTGTC+AGG | + | chr3.2:45012305-45012324 | None:intergenic | 25.0% |
| ! | TGTAACAAAGAAACAATCAA+AGG | + | chr3.2:45011572-45011591 | None:intergenic | 25.0% |
| ! | TTTAAGGGAAGTAAAATTTC+AGG | + | chr3.2:45013662-45013681 | None:intergenic | 25.0% |
| ! | TTTCTCACCAAAAGAAAAAT+GGG | + | chr3.2:45011242-45011261 | None:intergenic | 25.0% |
| !! | GTTAAACCTTCTGAAAATTT+CGG | - | chr3.2:45013913-45013932 | MS.gene043630:intron | 25.0% |
| !! | TAAAATTTCTAGGTCAATAG+GGG | + | chr3.2:45013805-45013824 | None:intergenic | 25.0% |
| !! | TTAAACTAGGCTAAGTTTTA+AGG | - | chr3.2:45013734-45013753 | MS.gene043630:intron | 25.0% |
| !! | TTGATTGTTTCTTTGTTACA+GGG | - | chr3.2:45011572-45011591 | MS.gene043630:intron | 25.0% |
| !! | TTTGATTGTTTCTTTGTTAC+AGG | - | chr3.2:45011571-45011590 | MS.gene043630:intron | 25.0% |
| !! | TTTTTACAGTAGCGAAAATT+AGG | + | chr3.2:45011545-45011564 | None:intergenic | 25.0% |
| !!! | ATGATCTGAATGTTTTTCAA+AGG | - | chr3.2:45011456-45011475 | MS.gene043630:CDS | 25.0% |
| !!! | ATTTTATTTAGACTCGTGTT+TGG | + | chr3.2:45012868-45012887 | None:intergenic | 25.0% |
| !!! | CATTTGAGTCATTTTATAGT+TGG | + | chr3.2:45012129-45012148 | None:intergenic | 25.0% |
| !!! | CTTTTTTCAATTAGAAGTGT+CGG | - | chr3.2:45011912-45011931 | MS.gene043630:intron | 25.0% |
| !!! | GTAATTACCCATTTTTCTTT+TGG | - | chr3.2:45011232-45011251 | MS.gene043630:intron | 25.0% |
| !!! | TGTTTTGATTTGCATGAAAT+AGG | - | chr3.2:45011284-45011303 | MS.gene043630:CDS | 25.0% |
| !!! | TTCGTAACTTTTGAAGAATT+CGG | + | chr3.2:45013254-45013273 | None:intergenic | 25.0% |
| AAACTACAGCAATCAAACAA+AGG | + | chr3.2:45013775-45013794 | None:intergenic | 30.0% | |
| ACTAAAGTAGACAAACACAT+TGG | - | chr3.2:45011796-45011815 | MS.gene043630:intron | 30.0% | |
| ATATTGAAATACCATGAAGC+CGG | + | chr3.2:45014253-45014272 | None:intergenic | 30.0% | |
| ATTAGATTGAAGTAATCGGA+TGG | - | chr3.2:45012556-45012575 | MS.gene043630:intron | 30.0% | |
| CAAGCATATAAACCAAGAAA+AGG | + | chr3.2:45011953-45011972 | None:intergenic | 30.0% | |
| GAACTAATTAACAACAGTGT+TGG | - | chr3.2:45012897-45012916 | MS.gene043630:intron | 30.0% | |
| GATGATGCTAAATATGAAAG+TGG | + | chr3.2:45013691-45013710 | None:intergenic | 30.0% | |
| GGAAGTAAAATTTCAGGATT+TGG | + | chr3.2:45013656-45013675 | None:intergenic | 30.0% | |
| GTGACCATGAAATTAATTCT+GGG | - | chr3.2:45014049-45014068 | MS.gene043630:intron | 30.0% | |
| TGTGACCATGAAATTAATTC+TGG | - | chr3.2:45014048-45014067 | MS.gene043630:intron | 30.0% | |
| TTAATTACAAGTGTCAGTGT+CGG | + | chr3.2:45013351-45013370 | None:intergenic | 30.0% | |
| TTGACCCAGAATTAATTTCA+TGG | + | chr3.2:45014056-45014075 | None:intergenic | 30.0% | |
| TTGATCAAATAACTAGTTGG+TGG | - | chr3.2:45012506-45012525 | MS.gene043630:intron | 30.0% | |
| ! | ATTGTTTTCATGTTTTGTCC+AGG | + | chr3.2:45013581-45013600 | None:intergenic | 30.0% |
| ! | TACTAACTCACAACTTGTTT+CGG | + | chr3.2:45013608-45013627 | None:intergenic | 30.0% |
| !! | AGTCAGTTTTAATGTCTGAT+TGG | - | chr3.2:45011622-45011641 | MS.gene043630:intron | 30.0% |
| !! | ATAACTAGTTGGTGGAAAAA+CGG | - | chr3.2:45012514-45012533 | MS.gene043630:intron | 30.0% |
| !! | TGGTTATTTTATGAGGAACT+TGG | - | chr3.2:45012631-45012650 | MS.gene043630:intron | 30.0% |
| !! | TTTTAAGGATAAACACCTGT+TGG | - | chr3.2:45013831-45013850 | MS.gene043630:intron | 30.0% |
| !!! | ATGTCTGATTGGAAGTATTT+TGG | - | chr3.2:45011633-45011652 | MS.gene043630:intron | 30.0% |
| AATGTAGCTATATAGGTCAG+TGG | - | chr3.2:45011863-45011882 | MS.gene043630:intron | 35.0% | |
| AATTATCTCTTCCCAACAGT+GGG | + | chr3.2:45012943-45012962 | None:intergenic | 35.0% | |
| ATACTTACATCATCAGTGTG+TGG | + | chr3.2:45011148-45011167 | None:intergenic | 35.0% | |
| ATTGGAGTAGTGTAATGACT+TGG | - | chr3.2:45011318-45011337 | MS.gene043630:intron | 35.0% | |
| ATTGTTCAGAATTCTGGATC+AGG | - | chr3.2:45012018-45012037 | MS.gene043630:intron | 35.0% | |
| CACATAATTCGTGTGATTTG+AGG | - | chr3.2:45012733-45012752 | MS.gene043630:intron | 35.0% | |
| CTCTGCTCAATTTATCGTAA+TGG | - | chr3.2:45013943-45013962 | MS.gene043630:intron | 35.0% | |
| GAGAAAGAAGTAGAATAGCT+TGG | - | chr3.2:45012074-45012093 | MS.gene043630:intron | 35.0% | |
| GATATAAATGAATGGCAGTG+TGG | - | chr3.2:45012350-45012369 | MS.gene043630:intron | 35.0% | |
| GGAAGAGATAATTAAATCCC+TGG | - | chr3.2:45012950-45012969 | MS.gene043630:intron | 35.0% | |
| TAATTATCTCTTCCCAACAG+TGG | + | chr3.2:45012944-45012963 | None:intergenic | 35.0% | |
| TCACACGAATTATGTGACTA+TGG | + | chr3.2:45012729-45012748 | None:intergenic | 35.0% | |
| TGACCGACATACATCAATAT+TGG | - | chr3.2:45012173-45012192 | MS.gene043630:intron | 35.0% | |
| TGCTAACTATTTCCTTGAGA+AGG | - | chr3.2:45013487-45013506 | MS.gene043630:intron | 35.0% | |
| TGGAAAACAACTATCAGCTA+TGG | + | chr3.2:45014207-45014226 | None:intergenic | 35.0% | |
| TTATTTAGACTCGTGTTTGG+TGG | + | chr3.2:45012865-45012884 | None:intergenic | 35.0% | |
| ! | AAGCTACCGAAATTTTCAGA+AGG | + | chr3.2:45013922-45013941 | None:intergenic | 35.0% |
| ! | ATAATATCTCAAGAAGGTGC+AGG | - | chr3.2:45012273-45012292 | MS.gene043630:intron | 35.0% |
| ! | CTAATTGAAAAAAGCGTGTC+AGG | + | chr3.2:45011906-45011925 | None:intergenic | 35.0% |
| ! | CTTGTGCTTTTATTGCTTGT+CGG | - | chr3.2:45011969-45011988 | MS.gene043630:intron | 35.0% |
| ! | CTTTTATTGCTTGTCGGAAT+TGG | - | chr3.2:45011975-45011994 | MS.gene043630:intron | 35.0% |
| ! | TCTAAGCTGATAGTGTATGA+AGG | - | chr3.2:45012671-45012690 | MS.gene043630:intron | 35.0% |
| !! | AGTTGTTTTCCAGTTAACGA+GGG | - | chr3.2:45014215-45014234 | MS.gene043630:intron | 35.0% |
| !! | ATGAAAGTGGTGTTGCTTTA+AGG | + | chr3.2:45013678-45013697 | None:intergenic | 35.0% |
| !! | GTTGATAGTTGATAGCTGAT+AGG | - | chr3.2:45013458-45013477 | MS.gene043630:CDS | 35.0% |
| !! | TAGTTGTTTTCCAGTTAACG+AGG | - | chr3.2:45014214-45014233 | MS.gene043630:intron | 35.0% |
| !! | TCAACAATGAAGCATTGACA+CGG | + | chr3.2:45013443-45013462 | None:intergenic | 35.0% |
| !! | TGAAAGTGGTGTTGCTTTAA+GGG | + | chr3.2:45013677-45013696 | None:intergenic | 35.0% |
| !! | TTTTGAAGAATTCGGTACGT+GGG | + | chr3.2:45013246-45013265 | None:intergenic | 35.0% |
| !!! | GTTTTTTGATAGTCCCACAT+CGG | + | chr3.2:45013084-45013103 | None:intergenic | 35.0% |
| ACTATGTGTCTGACATGTGT+CGG | - | chr3.2:45013324-45013343 | MS.gene043630:intron | 40.0% | |
| ATACTTAGTCGGTACGCTAT+GGG | + | chr3.2:45013219-45013238 | None:intergenic | 40.0% | |
| ATGTAGATTCAGATGCTGCA+AGG | - | chr3.2:45011597-45011616 | MS.gene043630:intron | 40.0% | |
| ATGTCAGACACATAGTCACA+TGG | + | chr3.2:45013320-45013339 | None:intergenic | 40.0% | |
| ATTATCTCTTCCCAACAGTG+GGG | + | chr3.2:45012942-45012961 | None:intergenic | 40.0% | |
| ATTGCTTGTCGGAATTGGTA+TGG | - | chr3.2:45011980-45011999 | MS.gene043630:intron | 40.0% | |
| GACAGTTCTTGCATATGGAA+AGG | + | chr3.2:45013062-45013081 | None:intergenic | 40.0% | |
| GCAGTATTTGACGACATTTG+TGG | - | chr3.2:45012238-45012257 | MS.gene043630:intron | 40.0% | |
| GTTGGGTAGTGATAAATCAC+TGG | - | chr3.2:45012915-45012934 | MS.gene043630:intron | 40.0% | |
| TAACCACAAATCACTCCAAC+AGG | + | chr3.2:45013849-45013868 | None:intergenic | 40.0% | |
| TATACTTAGTCGGTACGCTA+TGG | + | chr3.2:45013220-45013239 | None:intergenic | 40.0% | |
| TGCATATGGAAAGGAAGAAG+TGG | + | chr3.2:45013053-45013072 | None:intergenic | 40.0% | |
| TTGCAGCATCTGAATCTACA+TGG | + | chr3.2:45011598-45011617 | None:intergenic | 40.0% | |
| TTTGAAGAATTCGGTACGTG+GGG | + | chr3.2:45013245-45013264 | None:intergenic | 40.0% | |
| ! | ATGCCTTCAATCTGAGGTAT+CGG | + | chr3.2:45012698-45012717 | None:intergenic | 40.0% |
| ! | TCGTGTTCTTGTTGCTTACA+AGG | - | chr3.2:45011110-45011129 | MS.gene043630:CDS | 40.0% |
| !! | CTTTTGAAGAATTCGGTACG+TGG | + | chr3.2:45013247-45013266 | None:intergenic | 40.0% |
| ACACCTGTTGGAGTGATTTG+TGG | - | chr3.2:45013843-45013862 | MS.gene043630:intron | 45.0% | |
| AGAGACATGCCTTCAATCTG+AGG | + | chr3.2:45012704-45012723 | None:intergenic | 45.0% | |
| AGCTTGGAAGATCGTTCAAG+AGG | - | chr3.2:45012090-45012109 | MS.gene043630:intron | 45.0% | |
| ATGCAAGAACTGTCCGATGT+GGG | - | chr3.2:45013068-45013087 | MS.gene043630:CDS | 45.0% | |
| CACATACATCTGCTAAGCAC+CGG | + | chr3.2:45014017-45014036 | None:intergenic | 45.0% | |
| CATCGGACAGTTCTTGCATA+TGG | + | chr3.2:45013067-45013086 | None:intergenic | 45.0% | |
| CATTGACACGGACATTGGAT+AGG | + | chr3.2:45013431-45013450 | None:intergenic | 45.0% | |
| CCAAGAATTCGTCAGAACTG+GGG | - | chr3.2:45012823-45012842 | MS.gene043630:intron | 45.0% | |
| CCCAAGAATTCGTCAGAACT+GGG | - | chr3.2:45012822-45012841 | MS.gene043630:intron | 45.0% | |
| GAGCTCAGAAAAGTCCAAGA+TGG | + | chr3.2:45013515-45013534 | None:intergenic | 45.0% | |
| GCTGAATCCAGAAAGAAAGC+CGG | - | chr3.2:45013995-45014014 | MS.gene043630:intron | 45.0% | |
| TATGCAAGAACTGTCCGATG+TGG | - | chr3.2:45013067-45013086 | MS.gene043630:CDS | 45.0% | |
| TCCAAGATGGTACCTTCTCA+AGG | + | chr3.2:45013502-45013521 | None:intergenic | 45.0% | |
| TTGAAGAATTCGGTACGTGG+GGG | + | chr3.2:45013244-45013263 | None:intergenic | 45.0% | |
| ! | ATTTGAGGTGAACCGCAAAC+TGG | - | chr3.2:45012748-45012767 | MS.gene043630:intron | 45.0% |
| ! | CCCAGTTCTGACGAATTCTT+GGG | + | chr3.2:45012825-45012844 | None:intergenic | 45.0% |
| ! | TTATTTCTTGCTGCAGCAGC+AGG | + | chr3.2:45014096-45014115 | None:intergenic | 45.0% |
| !! | TCCTTGAGAAGGTACCATCT+TGG | - | chr3.2:45013498-45013517 | MS.gene043630:intron | 45.0% |
| !! | TGAAGCATTGACACGGACAT+TGG | + | chr3.2:45013436-45013455 | None:intergenic | 45.0% |
| !!! | GTTTGGTGGTGTGGTTTTTG+CGG | + | chr3.2:45012851-45012870 | None:intergenic | 45.0% |
| !!! | ATTTTTTTGAAATATTAATA+TGG | - | chr3.2:45012611-45012630 | MS.gene043630:intron | 5.0% |
| AAATCACTGGTCCCCACTGT+TGG | - | chr3.2:45012928-45012947 | MS.gene043630:intron | 50.0% | |
| AACATGCTTGAGTCGTGTCC+TGG | - | chr3.2:45013560-45013579 | MS.gene043630:intron | 50.0% | |
| AATCACTGGTCCCCACTGTT+GGG | - | chr3.2:45012929-45012948 | MS.gene043630:intron | 50.0% | |
| ACATGGTTCGCAATTCGCTC+CGG | + | chr3.2:45013303-45013322 | None:intergenic | 50.0% | |
| ATGGTTAACTGGTGGGACCA+GGG | + | chr3.2:45012970-45012989 | None:intergenic | 50.0% | |
| ATTCTGGATCAGGAGCAGAG+TGG | - | chr3.2:45012028-45012047 | MS.gene043630:intron | 50.0% | |
| CGGTGCTTAGCAGATGTATG+TGG | - | chr3.2:45014015-45014034 | MS.gene043630:intron | 50.0% | |
| GCCCAAGAATTCGTCAGAAC+TGG | - | chr3.2:45012821-45012840 | MS.gene043630:intron | 50.0% | |
| GCCTAGCATGGTTAACTGGT+GGG | + | chr3.2:45012977-45012996 | None:intergenic | 50.0% | |
| GGACCGATACCTCAGATTGA+AGG | - | chr3.2:45012692-45012711 | MS.gene043630:intron | 50.0% | |
| GGTACGTACGAACCAGTTTG+CGG | + | chr3.2:45012763-45012782 | None:intergenic | 50.0% | |
| GTGGAAAGCCTTTCTCCAGA+GGG | - | chr3.2:45014394-45014413 | MS.gene043630:CDS | 50.0% | |
| TCCCACCAGTTAACCATGCT+AGG | - | chr3.2:45012973-45012992 | MS.gene043630:intron | 50.0% | |
| TGAAGAATTCGGTACGTGGG+GGG | + | chr3.2:45013243-45013262 | None:intergenic | 50.0% | |
| TTGGGCGAATTGTAGCGAAC+CGG | + | chr3.2:45012807-45012826 | None:intergenic | 50.0% | |
| ! | ACGTGGGGGGTATACTTAGT+CGG | + | chr3.2:45013230-45013249 | None:intergenic | 50.0% |
| ! | CCCCAGTTCTGACGAATTCT+TGG | + | chr3.2:45012826-45012845 | None:intergenic | 50.0% |
| !! | CTAAGCACCGGCTTTCTTTC+TGG | + | chr3.2:45014005-45014024 | None:intergenic | 50.0% |
| !! | GCAAACTGGTTCGTACGTAC+CGG | - | chr3.2:45012762-45012781 | MS.gene043630:intron | 50.0% |
| !! | TAGACTCGTGTTTGGTGGTG+TGG | + | chr3.2:45012860-45012879 | None:intergenic | 50.0% |
| ACGCGCCTAGCATGGTTAAC+TGG | + | chr3.2:45012981-45013000 | None:intergenic | 55.0% | |
| AGTTAACCATGCTAGGCGCG+TGG | - | chr3.2:45012980-45012999 | MS.gene043630:intron | 55.0% | |
| ATTCGCTCCGGTACGTGGTA+CGG | + | chr3.2:45013291-45013310 | None:intergenic | 55.0% | |
| CATGGTTAACTGGTGGGACC+AGG | + | chr3.2:45012971-45012990 | None:intergenic | 55.0% | |
| CGCCTAGCATGGTTAACTGG+TGG | + | chr3.2:45012978-45012997 | None:intergenic | 55.0% | |
| CGTGGAAAGCCTTTCTCCAG+AGG | - | chr3.2:45014393-45014412 | MS.gene043630:CDS | 55.0% | |
| GTTAACCATGCTAGGCGCGT+GGG | - | chr3.2:45012981-45013000 | MS.gene043630:intron | 55.0% | |
| TCAAATTACCCTGCGCCCTC+TGG | + | chr3.2:45014412-45014431 | None:intergenic | 55.0% | |
| TGTGATGCTCACACCTGCAC+TGG | - | chr3.2:45014369-45014388 | MS.gene043630:CDS | 55.0% | |
| TTCGCGGTACTTCGGAGTAC+CGG | - | chr3.2:45012785-45012804 | MS.gene043630:intron | 55.0% | |
| !! | TACTCCGAAGTACCGCGAAC+CGG | + | chr3.2:45012784-45012803 | None:intergenic | 55.0% |
| AGGCTTTCCACGTCCAGTGC+AGG | + | chr3.2:45014385-45014404 | None:intergenic | 60.0% | |
| CAAAACCCACGCGCCTAGCA+TGG | + | chr3.2:45012989-45013008 | None:intergenic | 60.0% | |
| GCTGCAGGACCCTCGTTAAC+TGG | + | chr3.2:45014227-45014246 | None:intergenic | 60.0% | |
| TCCGGTACGTGGTACGGGTT+CGG | + | chr3.2:45013285-45013304 | None:intergenic | 60.0% | |
| TCGCAATTCGCTCCGGTACG+TGG | + | chr3.2:45013296-45013315 | None:intergenic | 60.0% | |
| TTCGCTCCGGTACGTGGTAC+GGG | + | chr3.2:45013290-45013309 | None:intergenic | 60.0% | |
| ! | CATGCTAGGCGCGTGGGTTT+TGG | - | chr3.2:45012987-45013006 | MS.gene043630:intron | 60.0% |
| !! | CGTACCGGTTCGCGGTACTT+CGG | - | chr3.2:45012777-45012796 | MS.gene043630:intron | 60.0% |
| !! | GGTTCGTACGTACCGGTTCG+CGG | - | chr3.2:45012769-45012788 | MS.gene043630:intron | 60.0% |
| CCCGAACCCGTACCACGTAC+CGG | - | chr3.2:45013281-45013300 | MS.gene043630:intron | 65.0% | |
| CCGGTACGTGGTACGGGTTC+GGG | + | chr3.2:45013284-45013303 | None:intergenic | 65.0% | |
| GCTCACACCTGCACTGGACG+TGG | - | chr3.2:45014375-45014394 | MS.gene043630:CDS | 65.0% | |
| GTGGTACGGGTTCGGGTACG+CGG | + | chr3.2:45013277-45013296 | None:intergenic | 65.0% | |
| ! | ACCCTGCGCCCTCTGGAGAA+AGG | + | chr3.2:45014405-45014424 | None:intergenic | 65.0% |
| ! | AGCCTTTCTCCAGAGGGCGC+AGG | - | chr3.2:45014400-45014419 | MS.gene043630:CDS | 65.0% |
| ! | GCCTTTCTCCAGAGGGCGCA+GGG | - | chr3.2:45014401-45014420 | MS.gene043630:CDS | 65.0% |
| ACGAGGGTCCTGCAGCGAGC+CGG | - | chr3.2:45014231-45014250 | MS.gene043630:intron | 70.0% | |
| ! | CCTGCAGCGAGCCGGCTTCA+TGG | - | chr3.2:45014239-45014258 | MS.gene043630:intron | 70.0% |
| !! | CCATGAAGCCGGCTCGCTGC+AGG | + | chr3.2:45014242-45014261 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 45011076 | 45014431 | 45011076 | ID=MS.gene043630 |
| chr3.2 | mRNA | 45011076 | 45014431 | 45011076 | ID=MS.gene043630.t1;Parent=MS.gene043630 |
| chr3.2 | exon | 45014348 | 45014431 | 45014348 | ID=MS.gene043630.t1.exon1;Parent=MS.gene043630.t1 |
| chr3.2 | CDS | 45014348 | 45014431 | 45014348 | ID=cds.MS.gene043630.t1;Parent=MS.gene043630.t1 |
| chr3.2 | exon | 45013889 | 45013914 | 45013889 | ID=MS.gene043630.t1.exon2;Parent=MS.gene043630.t1 |
| chr3.2 | CDS | 45013889 | 45013914 | 45013889 | ID=cds.MS.gene043630.t1;Parent=MS.gene043630.t1 |
| chr3.2 | exon | 45013396 | 45013480 | 45013396 | ID=MS.gene043630.t1.exon3;Parent=MS.gene043630.t1 |
| chr3.2 | CDS | 45013396 | 45013480 | 45013396 | ID=cds.MS.gene043630.t1;Parent=MS.gene043630.t1 |
| chr3.2 | exon | 45013056 | 45013265 | 45013056 | ID=MS.gene043630.t1.exon4;Parent=MS.gene043630.t1 |
| chr3.2 | CDS | 45013056 | 45013265 | 45013056 | ID=cds.MS.gene043630.t1;Parent=MS.gene043630.t1 |
| chr3.2 | exon | 45011379 | 45011501 | 45011379 | ID=MS.gene043630.t1.exon5;Parent=MS.gene043630.t1 |
| chr3.2 | CDS | 45011379 | 45011501 | 45011379 | ID=cds.MS.gene043630.t1;Parent=MS.gene043630.t1 |
| chr3.2 | exon | 45011247 | 45011304 | 45011247 | ID=MS.gene043630.t1.exon6;Parent=MS.gene043630.t1 |
| chr3.2 | CDS | 45011247 | 45011304 | 45011247 | ID=cds.MS.gene043630.t1;Parent=MS.gene043630.t1 |
| chr3.2 | exon | 45011076 | 45011158 | 45011076 | ID=MS.gene043630.t1.exon7;Parent=MS.gene043630.t1 |
| chr3.2 | CDS | 45011076 | 45011158 | 45011076 | ID=cds.MS.gene043630.t1;Parent=MS.gene043630.t1 |
| Gene Sequence |
| Protein sequence |
