Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043668.t1 | AES78894.2 | 83 | 277 | 39 | 2 | 1 | 271 | 1 | 275 | 1.10E-125 | 459.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043668.t1 | Q8L3W1 | 29.9 | 278 | 141 | 7 | 6 | 235 | 2 | 273 | 7.4e-22 | 105.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043668.t1 | G7KVW7 | 83.0 | 277 | 39 | 2 | 1 | 271 | 1 | 275 | 7.9e-126 | 459.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043668.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043668.t1 | MTR_7g050720 | 83.032 | 277 | 39 | 2 | 1 | 271 | 1 | 275 | 4.89e-164 | 458 |
| MS.gene043668.t1 | MTR_7g050560 | 60.166 | 241 | 78 | 2 | 4 | 244 | 7 | 229 | 5.54e-97 | 288 |
| MS.gene043668.t1 | MTR_3g098790 | 61.446 | 249 | 81 | 6 | 1 | 245 | 1 | 238 | 4.42e-94 | 281 |
| MS.gene043668.t1 | MTR_7g050590 | 63.229 | 223 | 75 | 4 | 25 | 245 | 1 | 218 | 7.87e-93 | 276 |
| MS.gene043668.t1 | MTR_7g050710 | 57.143 | 245 | 99 | 4 | 4 | 247 | 7 | 246 | 1.88e-89 | 269 |
| MS.gene043668.t1 | MTR_7g050580 | 54.032 | 248 | 92 | 6 | 1 | 245 | 1 | 229 | 3.12e-79 | 242 |
| MS.gene043668.t1 | MTR_7g050640 | 75.221 | 113 | 25 | 1 | 1 | 110 | 1 | 113 | 3.43e-52 | 166 |
| MS.gene043668.t1 | MTR_1g108780 | 34.322 | 236 | 127 | 7 | 26 | 245 | 13 | 236 | 1.53e-34 | 130 |
| MS.gene043668.t1 | MTR_8g103940 | 34.043 | 235 | 137 | 6 | 10 | 232 | 39 | 267 | 6.41e-34 | 129 |
| MS.gene043668.t1 | MTR_1g035460 | 34.454 | 238 | 135 | 6 | 25 | 245 | 1 | 234 | 4.85e-33 | 125 |
| MS.gene043668.t1 | MTR_5g044670 | 33.191 | 235 | 132 | 5 | 10 | 234 | 16 | 235 | 9.95e-32 | 120 |
| MS.gene043668.t1 | MTR_3g061330 | 30.303 | 264 | 138 | 6 | 7 | 254 | 9 | 242 | 6.29e-30 | 113 |
| MS.gene043668.t1 | MTR_3g061320 | 33.182 | 220 | 124 | 7 | 7 | 225 | 9 | 206 | 7.98e-29 | 111 |
| MS.gene043668.t1 | MTR_3g061290 | 50.000 | 102 | 49 | 1 | 7 | 108 | 9 | 108 | 1.46e-26 | 103 |
| MS.gene043668.t1 | MTR_3g061310 | 46.078 | 102 | 53 | 1 | 7 | 108 | 9 | 108 | 3.73e-24 | 99.0 |
| MS.gene043668.t1 | MTR_3g061370 | 30.516 | 213 | 113 | 4 | 10 | 212 | 9 | 196 | 8.24e-24 | 97.8 |
| MS.gene043668.t1 | MTR_3g061340 | 48.544 | 103 | 50 | 2 | 7 | 108 | 9 | 109 | 2.16e-23 | 96.7 |
| MS.gene043668.t1 | MTR_3g061350 | 29.130 | 230 | 125 | 7 | 7 | 225 | 9 | 211 | 2.32e-23 | 96.7 |
| MS.gene043668.t1 | MTR_4g068320 | 40.909 | 110 | 63 | 1 | 5 | 112 | 1 | 110 | 4.20e-22 | 95.5 |
| MS.gene043668.t1 | MTR_1g035640 | 33.891 | 239 | 123 | 10 | 1 | 232 | 1 | 211 | 7.26e-22 | 95.1 |
| MS.gene043668.t1 | MTR_6g043890 | 39.837 | 123 | 71 | 2 | 9 | 128 | 14 | 136 | 7.58e-22 | 93.6 |
| MS.gene043668.t1 | MTR_1g034240 | 39.231 | 130 | 76 | 2 | 6 | 134 | 3 | 130 | 1.29e-21 | 94.0 |
| MS.gene043668.t1 | MTR_4g119990 | 30.603 | 232 | 150 | 4 | 9 | 232 | 14 | 242 | 2.58e-21 | 92.8 |
| MS.gene043668.t1 | MTR_1g035570 | 32.917 | 240 | 131 | 8 | 1 | 232 | 1 | 218 | 2.70e-21 | 92.8 |
| MS.gene043668.t1 | MTR_3g005480 | 37.864 | 103 | 64 | 0 | 9 | 111 | 20 | 122 | 3.68e-21 | 90.5 |
| MS.gene043668.t1 | MTR_1g035620 | 32.174 | 230 | 123 | 8 | 7 | 232 | 6 | 206 | 4.58e-21 | 92.4 |
| MS.gene043668.t1 | MTR_5g070440 | 37.864 | 103 | 64 | 0 | 9 | 111 | 20 | 122 | 1.23e-20 | 89.4 |
| MS.gene043668.t1 | MTR_1g035650 | 32.569 | 218 | 115 | 7 | 5 | 214 | 4 | 197 | 9.47e-20 | 85.5 |
| MS.gene043668.t1 | MTR_3g005490 | 33.582 | 134 | 87 | 1 | 9 | 140 | 20 | 153 | 1.25e-19 | 86.3 |
| MS.gene043668.t1 | MTR_1g050845 | 43.137 | 102 | 56 | 1 | 7 | 108 | 6 | 105 | 1.49e-19 | 89.0 |
| MS.gene043668.t1 | MTR_3g005460 | 36.893 | 103 | 65 | 0 | 9 | 111 | 24 | 126 | 6.66e-19 | 86.7 |
| MS.gene043668.t1 | MTR_3g005460 | 30.935 | 139 | 95 | 1 | 9 | 146 | 261 | 399 | 5.45e-17 | 80.9 |
| MS.gene043668.t1 | MTR_3g061220 | 42.157 | 102 | 44 | 2 | 7 | 108 | 9 | 95 | 1.07e-18 | 80.1 |
| MS.gene043668.t1 | MTR_1g035480 | 35.211 | 142 | 84 | 3 | 9 | 145 | 16 | 154 | 1.16e-18 | 81.6 |
| MS.gene043668.t1 | MTR_3g005495 | 33.103 | 145 | 93 | 1 | 9 | 149 | 242 | 386 | 1.28e-18 | 85.5 |
| MS.gene043668.t1 | MTR_3g005495 | 38.372 | 86 | 53 | 0 | 26 | 111 | 29 | 114 | 9.40e-17 | 80.1 |
| MS.gene043668.t1 | MTR_1g033740 | 36.585 | 123 | 75 | 2 | 9 | 131 | 21 | 140 | 1.10e-17 | 79.3 |
| MS.gene043668.t1 | MTR_3g005420 | 32.000 | 150 | 102 | 0 | 9 | 158 | 288 | 437 | 2.27e-17 | 82.0 |
| MS.gene043668.t1 | MTR_3g005420 | 30.769 | 104 | 71 | 1 | 9 | 111 | 39 | 142 | 1.07e-12 | 68.2 |
| MS.gene043668.t1 | MTR_6g061070 | 35.971 | 139 | 81 | 3 | 9 | 147 | 17 | 147 | 3.77e-16 | 78.6 |
| MS.gene043668.t1 | MTR_1g034210 | 40.000 | 95 | 57 | 0 | 10 | 104 | 7 | 101 | 4.00e-16 | 77.4 |
| MS.gene043668.t1 | MTR_1g035440 | 40.385 | 104 | 61 | 1 | 9 | 111 | 14 | 117 | 5.63e-16 | 75.9 |
| MS.gene043668.t1 | MTR_1g034210 | 40.000 | 95 | 57 | 0 | 10 | 104 | 7 | 101 | 6.12e-16 | 77.4 |
| MS.gene043668.t1 | MTR_1g021360 | 29.224 | 219 | 133 | 6 | 23 | 232 | 195 | 400 | 6.32e-16 | 77.8 |
| MS.gene043668.t1 | MTR_1g021360 | 41.558 | 77 | 45 | 0 | 23 | 99 | 38 | 114 | 1.34e-11 | 64.7 |
| MS.gene043668.t1 | MTR_1g021400 | 24.016 | 254 | 163 | 5 | 9 | 232 | 29 | 282 | 9.05e-16 | 76.6 |
| MS.gene043668.t1 | MTR_3g005440 | 38.372 | 86 | 53 | 0 | 26 | 111 | 36 | 121 | 1.40e-15 | 76.6 |
| MS.gene043668.t1 | MTR_3g005440 | 32.800 | 125 | 84 | 0 | 9 | 133 | 241 | 365 | 4.44e-14 | 72.0 |
| MS.gene043668.t1 | MTR_1g021320 | 31.053 | 190 | 105 | 6 | 9 | 194 | 183 | 350 | 1.70e-15 | 76.6 |
| MS.gene043668.t1 | MTR_1g021320 | 39.560 | 91 | 55 | 0 | 9 | 99 | 24 | 114 | 1.52e-14 | 73.9 |
| MS.gene043668.t1 | MTR_1g021440 | 39.796 | 98 | 58 | 1 | 3 | 100 | 16 | 112 | 1.79e-15 | 75.5 |
| MS.gene043668.t1 | MTR_1g021440 | 39.796 | 98 | 58 | 1 | 3 | 100 | 16 | 112 | 1.80e-15 | 75.1 |
| MS.gene043668.t1 | MTR_1g021440 | 39.796 | 98 | 58 | 1 | 3 | 100 | 16 | 112 | 3.19e-15 | 75.5 |
| MS.gene043668.t1 | MTR_1g021440 | 39.796 | 98 | 58 | 1 | 3 | 100 | 16 | 112 | 3.79e-15 | 75.1 |
| MS.gene043668.t1 | MTR_1g021270 | 24.752 | 303 | 180 | 9 | 9 | 267 | 15 | 313 | 1.20e-14 | 73.9 |
| MS.gene043668.t1 | MTR_1g021435 | 25.651 | 269 | 153 | 6 | 3 | 232 | 15 | 275 | 1.28e-14 | 73.6 |
| MS.gene043668.t1 | MTR_1g035500 | 33.333 | 123 | 79 | 2 | 9 | 131 | 24 | 143 | 2.71e-14 | 70.1 |
| MS.gene043668.t1 | MTR_1g035510 | 41.667 | 96 | 53 | 2 | 25 | 120 | 1 | 93 | 6.05e-14 | 69.7 |
| MS.gene043668.t1 | MTR_1g021410 | 23.985 | 271 | 154 | 5 | 3 | 232 | 16 | 275 | 7.87e-14 | 71.2 |
| MS.gene043668.t1 | MTR_1g021350 | 36.170 | 94 | 60 | 0 | 11 | 104 | 22 | 115 | 9.79e-14 | 70.9 |
| MS.gene043668.t1 | MTR_1g021290 | 39.506 | 81 | 49 | 0 | 24 | 104 | 169 | 249 | 4.47e-13 | 68.9 |
| MS.gene043668.t1 | MTR_1g021290 | 34.375 | 96 | 62 | 1 | 9 | 104 | 27 | 121 | 1.27e-12 | 67.4 |
| MS.gene043668.t1 | MTR_1g021330 | 23.684 | 266 | 161 | 5 | 9 | 232 | 25 | 290 | 4.67e-13 | 68.9 |
| MS.gene043668.t1 | MTR_1g035520 | 40.000 | 105 | 53 | 3 | 8 | 112 | 77 | 171 | 6.62e-13 | 68.6 |
| MS.gene043668.t1 | MTR_3g005420 | 30.769 | 104 | 71 | 1 | 9 | 111 | 20 | 123 | 1.03e-12 | 68.2 |
| MS.gene043668.t1 | MTR_1g035470 | 40.625 | 96 | 54 | 2 | 25 | 120 | 1 | 93 | 1.25e-12 | 64.3 |
| MS.gene043668.t1 | MTR_1g021380 | 35.052 | 97 | 62 | 1 | 3 | 99 | 15 | 110 | 3.81e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043668.t1 | AT3G18990 | 29.749 | 279 | 142 | 7 | 6 | 236 | 2 | 274 | 5.37e-27 | 107 |
| MS.gene043668.t1 | AT3G18990 | 29.856 | 278 | 141 | 7 | 6 | 235 | 2 | 273 | 1.16e-26 | 107 |
| MS.gene043668.t1 | AT4G01580 | 37.162 | 148 | 89 | 2 | 4 | 151 | 24 | 167 | 1.15e-23 | 95.5 |
| MS.gene043668.t1 | AT3G18960 | 40.909 | 110 | 65 | 0 | 4 | 113 | 24 | 133 | 5.90e-23 | 94.0 |
| MS.gene043668.t1 | AT3G18960 | 40.909 | 110 | 65 | 0 | 4 | 113 | 24 | 133 | 5.91e-23 | 93.6 |
| MS.gene043668.t1 | AT1G49475 | 39.815 | 108 | 64 | 1 | 10 | 117 | 34 | 140 | 6.74e-21 | 88.2 |
| MS.gene043668.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 26 | 113 | 9 | 96 | 1.10e-19 | 84.3 |
| MS.gene043668.t1 | AT4G33280 | 26.271 | 236 | 161 | 6 | 8 | 233 | 18 | 250 | 3.01e-13 | 69.3 |
| MS.gene043668.t1 | AT4G33280 | 39.604 | 101 | 57 | 2 | 8 | 104 | 18 | 118 | 9.65e-13 | 67.4 |
| MS.gene043668.t1 | AT4G33280 | 39.604 | 101 | 57 | 2 | 8 | 104 | 18 | 118 | 1.44e-12 | 67.8 |
Find 55 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGAGTTTGCTCTGTTAA+AGG | 0.150047 | 7.4:-51761499 | None:intergenic |
| TTTGATCAACCTTGTGAAAT+TGG | 0.182486 | 7.4:+51761171 | MS.gene043668:CDS |
| CGAAGATATGCACTTCAAAA+TGG | 0.219349 | 7.4:-51761002 | None:intergenic |
| CTGTGTTAATGTTGGGAAAT+TGG | 0.232090 | 7.4:+51761203 | MS.gene043668:CDS |
| TATTTCTCCACAAACTTTCT+TGG | 0.252264 | 7.4:-51760805 | None:intergenic |
| TTTGGTAAAAGACACTTATT+AGG | 0.278617 | 7.4:+51762306 | MS.gene043668:CDS |
| AGAAAGTTTGTGGAGAAATA+TGG | 0.293086 | 7.4:+51760808 | MS.gene043668:CDS |
| ATGATCATACCTTGAAATAT+TGG | 0.299709 | 7.4:-51762559 | None:intergenic |
| AAGATCGTTGGATACCCTTT+TGG | 0.336100 | 7.4:-51761070 | None:intergenic |
| TTCTTAATTAGATACCTTGC+AGG | 0.344195 | 7.4:-51762356 | None:intergenic |
| AAAAGACACTTATTAGGTTT+AGG | 0.347950 | 7.4:+51762312 | MS.gene043668:CDS |
| CAGAACATACCAAGTGAGTT+TGG | 0.360251 | 7.4:+51762288 | MS.gene043668:intron |
| TGCAAAGTGGAAATTAGATT+TGG | 0.387755 | 7.4:+51760873 | MS.gene043668:CDS |
| ATTTCTCCACAAACTTTCTT+GGG | 0.389419 | 7.4:-51760804 | None:intergenic |
| TCCTTCAACCTTCTCTGTGT+TGG | 0.395260 | 7.4:-51762989 | None:intergenic |
| GGATGCTTCCTGGGTCTTGA+GGG | 0.398246 | 7.4:+51763009 | MS.gene043668:CDS |
| GAAGGTTGAAGGATGCTTCC+TGG | 0.401660 | 7.4:+51762999 | MS.gene043668:CDS |
| TGAATTTGTCCAATATTTCA+AGG | 0.405461 | 7.4:+51762550 | MS.gene043668:CDS |
| CATTGATGCTGCTTGTAATC+TGG | 0.414628 | 7.4:+51761566 | MS.gene043668:CDS |
| TGGACGCATGACAGCAATAA+AGG | 0.428279 | 7.4:-51761538 | None:intergenic |
| TCCAAAGAGTTGAAGCCAAA+AGG | 0.428396 | 7.4:+51761055 | MS.gene043668:CDS |
| GCAATTGGCTATTGCTAAGA+AGG | 0.428605 | 7.4:+51761470 | MS.gene043668:CDS |
| AAATATGGTTTCAAAAGGGT+TGG | 0.440218 | 7.4:+51760911 | MS.gene043668:CDS |
| TCTTCGAAATCTTCATCCTT+CGG | 0.441942 | 7.4:-51761105 | None:intergenic |
| GAATGTTGCAGGAAAGCAAT+TGG | 0.446391 | 7.4:+51761455 | MS.gene043668:intron |
| GCAATAGCTGTGTTAATGTT+GGG | 0.448923 | 7.4:+51761196 | MS.gene043668:CDS |
| AGGATGCTTCCTGGGTCTTG+AGG | 0.455460 | 7.4:+51763008 | MS.gene043668:CDS |
| AAAAGGGTATCCAACGATCT+TGG | 0.458573 | 7.4:+51761072 | MS.gene043668:CDS |
| TTACAAGCTTTCCTTGATGA+AGG | 0.460972 | 7.4:-51760678 | None:intergenic |
| CCAAAGAGTTGAAGCCAAAA+GGG | 0.465061 | 7.4:+51761056 | MS.gene043668:CDS |
| GAAGATATGCACTTCAAAAT+GGG | 0.465804 | 7.4:-51761001 | None:intergenic |
| AATTTCCACTTTGCACCACT+TGG | 0.476170 | 7.4:-51760865 | None:intergenic |
| TGGCTTCAACTCTTTGGAAA+GGG | 0.481840 | 7.4:-51761050 | None:intergenic |
| AAGGTTGAAGGATGCTTCCT+GGG | 0.485195 | 7.4:+51763000 | MS.gene043668:CDS |
| TTTGTGGAGAAATATGGAAA+AGG | 0.487637 | 7.4:+51760814 | MS.gene043668:CDS |
| CATATTTGAAAAGCAGAAGA+TGG | 0.487743 | 7.4:-51760969 | None:intergenic |
| GGTGATCCCAAGAAAGTTTG+TGG | 0.488942 | 7.4:+51760798 | MS.gene043668:intron |
| AGGTTTATTGCCAAGATCGT+TGG | 0.509044 | 7.4:-51761082 | None:intergenic |
| TTGGCTTCAACTCTTTGGAA+AGG | 0.513756 | 7.4:-51761051 | None:intergenic |
| ACCAACACAGAGAAGGTTGA+AGG | 0.531275 | 7.4:+51762988 | MS.gene043668:CDS |
| CAAGCAGCATCAATGTATGA+TGG | 0.531742 | 7.4:-51761558 | None:intergenic |
| CAAGGAGAGTTTGGCCTGCA+AGG | 0.535771 | 7.4:+51762342 | MS.gene043668:CDS |
| TAATGTTGGGAAATTGGAAA+AGG | 0.536762 | 7.4:+51761209 | MS.gene043668:CDS |
| AGCAATAGCTGTGTTAATGT+TGG | 0.556338 | 7.4:+51761195 | MS.gene043668:CDS |
| TGCTTCCTGGGTCTTGAGGG+AGG | 0.557478 | 7.4:+51763012 | MS.gene043668:CDS |
| CGCATGACAGCAATAAAGGA+TGG | 0.564569 | 7.4:-51761534 | None:intergenic |
| TCGAAATCTTCATCCTTCGG+AGG | 0.570702 | 7.4:-51761102 | None:intergenic |
| CTATTGCTTCCAATTTCACA+AGG | 0.596543 | 7.4:-51761180 | None:intergenic |
| TGTGATCAAAGCCTTCATCA+AGG | 0.598883 | 7.4:+51760667 | MS.gene043668:CDS |
| GCTAGCCTCCCTCAAGACCC+AGG | 0.602673 | 7.4:-51763017 | None:intergenic |
| AAGTATCATTCGTTATCTCA+AGG | 0.607674 | 7.4:+51760946 | MS.gene043668:CDS |
| AAAGAAAACCAACACAGAGA+AGG | 0.613708 | 7.4:+51762981 | MS.gene043668:CDS |
| AGACTCCAAGTGGTGCAAAG+TGG | 0.629081 | 7.4:+51760860 | MS.gene043668:CDS |
| TCTTGGCAATAAACCTCCGA+AGG | 0.654473 | 7.4:+51761089 | MS.gene043668:CDS |
| ATATATCTAAAGACTCCAAG+TGG | 0.664356 | 7.4:+51760850 | MS.gene043668:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAACCATATTAATATAA+CGG | - | chr7.4:51760769-51760788 | None:intergenic | 10.0% |
| !!! | ACAAATATTTTAATTGTAAA+TGG | - | chr7.4:51760744-51760763 | None:intergenic | 10.0% |
| !!! | ATTTTTAATCCTTTATATTT+TGG | + | chr7.4:51761963-51761982 | MS.gene043668:intron | 10.0% |
| !!! | ATTTTTATTTTGAAGAAAAT+TGG | + | chr7.4:51762013-51762032 | MS.gene043668:intron | 10.0% |
| !!! | TATTTTTAGTTAAATATGTT+TGG | + | chr7.4:51761844-51761863 | MS.gene043668:intron | 10.0% |
| !!! | TTTTTAATCCTTTATATTTT+GGG | + | chr7.4:51761964-51761983 | MS.gene043668:intron | 10.0% |
| !! | ATAAATTTATTTGACACATT+AGG | - | chr7.4:51762612-51762631 | None:intergenic | 15.0% |
| !! | TATAAAAGAAATAGAAACAT+CGG | - | chr7.4:51762955-51762974 | None:intergenic | 15.0% |
| !!! | AACGTCATAAATTTTTTTAA+TGG | + | chr7.4:51761615-51761634 | MS.gene043668:intron | 15.0% |
| !!! | GTTAATCTTTATTGATAATT+TGG | + | chr7.4:51762060-51762079 | MS.gene043668:intron | 15.0% |
| !!! | TAAAATTTGGTAATTTGTTA+TGG | - | chr7.4:51761799-51761818 | None:intergenic | 15.0% |
| !!! | TAAATTTTTTTAATGGATGA+AGG | + | chr7.4:51761622-51761641 | MS.gene043668:intron | 15.0% |
| !! | AAAAAAAAAGGTAAATGAGT+GGG | - | chr7.4:51760708-51760727 | None:intergenic | 20.0% |
| !! | AACAAAAGCTTGAAAAAAAA+AGG | - | chr7.4:51760720-51760739 | None:intergenic | 20.0% |
| !! | ACATATGATCTTGAAAAAAT+GGG | - | chr7.4:51760650-51760669 | None:intergenic | 20.0% |
| !! | AGAATAGATCAATGATATTA+TGG | + | chr7.4:51761420-51761439 | MS.gene043668:intron | 20.0% |
| !! | ATATGGTTTAATTAATTGAC+AGG | + | chr7.4:51760777-51760796 | MS.gene043668:intron | 20.0% |
| !! | ATTTACTTTCACTTTATGAT+TGG | + | chr7.4:51761349-51761368 | MS.gene043668:intron | 20.0% |
| !! | CTAGTAATAATCTAATCATT+TGG | - | chr7.4:51762805-51762824 | None:intergenic | 20.0% |
| !! | GGTCTATAAATAATGAAAAA+TGG | + | chr7.4:51761985-51762004 | MS.gene043668:intron | 20.0% |
| !! | TTGTTTCCGTTATATTAATA+TGG | + | chr7.4:51760760-51760779 | MS.gene043668:intron | 20.0% |
| !! | TTTATAGACCCAAAATATAA+AGG | - | chr7.4:51761975-51761994 | None:intergenic | 20.0% |
| !!! | ATTGGTTAAGTTTCATTTTA+CGG | + | chr7.4:51761367-51761386 | MS.gene043668:intron | 20.0% |
| !!! | TAAAAAGTGATGGAAAAATA+TGG | + | chr7.4:51760896-51760915 | MS.gene043668:CDS | 20.0% |
| !!! | TCAATGTAAAATGTTTTACA+CGG | + | chr7.4:51762111-51762130 | MS.gene043668:intron | 20.0% |
| !!! | TTAGTCCAAACAATTTTATA+TGG | + | chr7.4:51761893-51761912 | MS.gene043668:intron | 20.0% |
| ! | AAAAGACACTTATTAGGTTT+AGG | + | chr7.4:51762312-51762331 | MS.gene043668:CDS | 25.0% |
| ! | AGAAAAACAACAAAGTTTGT+AGG | - | chr7.4:51762910-51762929 | None:intergenic | 25.0% |
| ! | ATCAATGATATTATGGCTTA+TGG | + | chr7.4:51761427-51761446 | MS.gene043668:intron | 25.0% |
| ! | ATGATCATACCTTGAAATAT+TGG | - | chr7.4:51762562-51762581 | None:intergenic | 25.0% |
| ! | ATTAAGAAAGGCAATAGAAA+AGG | + | chr7.4:51762371-51762390 | MS.gene043668:intron | 25.0% |
| ! | CAAGTCCATATAAAATTGTT+TGG | - | chr7.4:51761901-51761920 | None:intergenic | 25.0% |
| ! | CACATATGATCTTGAAAAAA+TGG | - | chr7.4:51760651-51760670 | None:intergenic | 25.0% |
| ! | CTAGTCTAATAACTAAGAAT+TGG | + | chr7.4:51762821-51762840 | MS.gene043668:intron | 25.0% |
| ! | GAAAAAAAAAGGTAAATGAG+TGG | - | chr7.4:51760709-51760728 | None:intergenic | 25.0% |
| ! | GGAAAAATATGGTTTCAAAA+GGG | + | chr7.4:51760907-51760926 | MS.gene043668:CDS | 25.0% |
| ! | TGAATTTGTCCAATATTTCA+AGG | + | chr7.4:51762550-51762569 | MS.gene043668:CDS | 25.0% |
| ! | TGGAAAAATATGGTTTCAAA+AGG | + | chr7.4:51760906-51760925 | MS.gene043668:CDS | 25.0% |
| ! | TTTGACCAGAGATATTTATA+GGG | - | chr7.4:51761871-51761890 | None:intergenic | 25.0% |
| ! | TTTGGTAAAAGACACTTATT+AGG | + | chr7.4:51762306-51762325 | MS.gene043668:CDS | 25.0% |
| !! | AAGATTTGTGGTATTTTGTA+AGG | + | chr7.4:51761924-51761943 | MS.gene043668:intron | 25.0% |
| !! | CAAATTTTACCCATTAAGTA+GGG | + | chr7.4:51761810-51761829 | MS.gene043668:intron | 25.0% |
| !! | CATATTGACAAAAAGTGTAA+AGG | + | chr7.4:51761246-51761265 | MS.gene043668:CDS | 25.0% |
| !! | TTAGATTTGGTAAAAAGTGA+TGG | + | chr7.4:51760886-51760905 | MS.gene043668:CDS | 25.0% |
| !! | TTTTGACCAGAGATATTTAT+AGG | - | chr7.4:51761872-51761891 | None:intergenic | 25.0% |
| !!! | AATTTGGTAATTTGTTATGG+TGG | - | chr7.4:51761796-51761815 | None:intergenic | 25.0% |
| !!! | ACAACTATTTTGCTTTTCTT+TGG | + | chr7.4:51762848-51762867 | MS.gene043668:intron | 25.0% |
| !!! | AGAACATTTTTGAAACTCTT+TGG | - | chr7.4:51762734-51762753 | None:intergenic | 25.0% |
| AAATATGGTTTCAAAAGGGT+TGG | + | chr7.4:51760911-51760930 | MS.gene043668:CDS | 30.0% | |
| AAGTATCATTCGTTATCTCA+AGG | + | chr7.4:51760946-51760965 | MS.gene043668:CDS | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | + | chr7.4:51760808-51760827 | MS.gene043668:CDS | 30.0% | |
| AGTATCAGTAGATACATTGT+CGG | - | chr7.4:51762238-51762257 | None:intergenic | 30.0% | |
| ATATATCTAAAGACTCCAAG+TGG | + | chr7.4:51760850-51760869 | MS.gene043668:CDS | 30.0% | |
| ATGATCTTGAAAAAATGGGA+TGG | - | chr7.4:51760646-51760665 | None:intergenic | 30.0% | |
| ATTTCTCCACAAACTTTCTT+GGG | - | chr7.4:51760807-51760826 | None:intergenic | 30.0% | |
| CATATTTGAAAAGCAGAAGA+TGG | - | chr7.4:51760972-51760991 | None:intergenic | 30.0% | |
| CTTCATTGTTCACATCTTTA+GGG | + | chr7.4:51762505-51762524 | MS.gene043668:intron | 30.0% | |
| GAAGATATGCACTTCAAAAT+GGG | - | chr7.4:51761004-51761023 | None:intergenic | 30.0% | |
| GAATGAAAAGCTAATAACTC+AGG | - | chr7.4:51761326-51761345 | None:intergenic | 30.0% | |
| TAATGTTGGGAAATTGGAAA+AGG | + | chr7.4:51761209-51761228 | MS.gene043668:CDS | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | - | chr7.4:51760808-51760827 | None:intergenic | 30.0% | |
| TGCAAAGTGGAAATTAGATT+TGG | + | chr7.4:51760873-51760892 | MS.gene043668:CDS | 30.0% | |
| TTCTTAATTAGATACCTTGC+AGG | - | chr7.4:51762359-51762378 | None:intergenic | 30.0% | |
| TTTGATCAACCTTGTGAAAT+TGG | + | chr7.4:51761171-51761190 | MS.gene043668:CDS | 30.0% | |
| TTTGTGGAGAAATATGGAAA+AGG | + | chr7.4:51760814-51760833 | MS.gene043668:CDS | 30.0% | |
| ! | ATACTTTTGACCCTACTTAA+TGG | - | chr7.4:51761823-51761842 | None:intergenic | 30.0% |
| ! | CCAAATTTTACCCATTAAGT+AGG | + | chr7.4:51761809-51761828 | MS.gene043668:intron | 30.0% |
| ! | CCTACTTAATGGGTAAAATT+TGG | - | chr7.4:51761812-51761831 | None:intergenic | 30.0% |
| ! | GAAAGATTTGAAATGTACTC+AGG | + | chr7.4:51762395-51762414 | MS.gene043668:intron | 30.0% |
| ! | GCAAGGTATCTAATTAAGAA+AGG | + | chr7.4:51762359-51762378 | MS.gene043668:intron | 30.0% |
| ! | TACTTTTGACCCTACTTAAT+GGG | - | chr7.4:51761822-51761841 | None:intergenic | 30.0% |
| !! | ATTTTGGGTGGAACAATTTT+GGG | - | chr7.4:51761735-51761754 | None:intergenic | 30.0% |
| !! | CATCTTCTGCTTTTCAAATA+TGG | + | chr7.4:51760970-51760989 | MS.gene043668:CDS | 30.0% |
| !! | TTGTTATGGTGGTTTTTCAA+GGG | - | chr7.4:51761785-51761804 | None:intergenic | 30.0% |
| !! | TTTGTTATGGTGGTTTTTCA+AGG | - | chr7.4:51761786-51761805 | None:intergenic | 30.0% |
| !!! | CTTTTTTTGTGTTAATCCTC+CGG | + | chr7.4:51761650-51761669 | MS.gene043668:intron | 30.0% |
| !!! | GAAAGGGTATTTTATCTCTA+AGG | - | chr7.4:51761037-51761056 | None:intergenic | 30.0% |
| !!! | GAGCTATTTTGGAATATAGA+AGG | + | chr7.4:51762669-51762688 | MS.gene043668:intron | 30.0% |
| AAAGAAAACCAACACAGAGA+AGG | + | chr7.4:51762981-51763000 | MS.gene043668:CDS | 35.0% | |
| AAGGTAAGTATAGTGCTAGT+AGG | - | chr7.4:51762488-51762507 | None:intergenic | 35.0% | |
| AGCAATAGCTGTGTTAATGT+TGG | + | chr7.4:51761195-51761214 | MS.gene043668:CDS | 35.0% | |
| ATCTTGAAAAAATGGGATGG+AGG | - | chr7.4:51760643-51760662 | None:intergenic | 35.0% | |
| ATGGACTTGACTAAGATTTG+TGG | + | chr7.4:51761912-51761931 | MS.gene043668:intron | 35.0% | |
| CCTAAAGATGTGAACAATGA+AGG | - | chr7.4:51762507-51762526 | None:intergenic | 35.0% | |
| CCTTCATTGTTCACATCTTT+AGG | + | chr7.4:51762504-51762523 | MS.gene043668:intron | 35.0% | |
| CGAAGATATGCACTTCAAAA+TGG | - | chr7.4:51761005-51761024 | None:intergenic | 35.0% | |
| CTATTGCTTCCAATTTCACA+AGG | - | chr7.4:51761183-51761202 | None:intergenic | 35.0% | |
| CTGTGTTAATGTTGGGAAAT+TGG | + | chr7.4:51761203-51761222 | MS.gene043668:CDS | 35.0% | |
| GAAGACAACAACTTGAAAGT+TGG | + | chr7.4:51762437-51762456 | MS.gene043668:intron | 35.0% | |
| GCAATAGCTGTGTTAATGTT+GGG | + | chr7.4:51761196-51761215 | MS.gene043668:CDS | 35.0% | |
| TCTTCGAAATCTTCATCCTT+CGG | - | chr7.4:51761108-51761127 | None:intergenic | 35.0% | |
| TTACAAGCTTTCCTTGATGA+AGG | - | chr7.4:51760681-51760700 | None:intergenic | 35.0% | |
| TTAGGTTTAGGCAAAAAGCA+AGG | + | chr7.4:51762324-51762343 | MS.gene043668:CDS | 35.0% | |
| TTGAAACTCTTTGGTTGTGA+TGG | - | chr7.4:51762725-51762744 | None:intergenic | 35.0% | |
| TTGAAATGTACTCAGGTGAA+TGG | + | chr7.4:51762402-51762421 | MS.gene043668:intron | 35.0% | |
| TTGGTCCCTATAAATATCTC+TGG | + | chr7.4:51761863-51761882 | MS.gene043668:intron | 35.0% | |
| ! | AATGTTTTACACGGTCAACA+AGG | + | chr7.4:51762120-51762139 | MS.gene043668:intron | 35.0% |
| ! | CATAGAGTTTGCTCTGTTAA+AGG | - | chr7.4:51761502-51761521 | None:intergenic | 35.0% |
| ! | GTGGTATTTTGTAAGGAGTA+AGG | + | chr7.4:51761931-51761950 | MS.gene043668:intron | 35.0% |
| ! | TGTCTTTTACCAAACTCACT+TGG | - | chr7.4:51762300-51762319 | None:intergenic | 35.0% |
| !! | GATTTTGGGTGGAACAATTT+TGG | - | chr7.4:51761736-51761755 | None:intergenic | 35.0% |
| AATTTCCACTTTGCACCACT+TGG | - | chr7.4:51760868-51760887 | None:intergenic | 40.0% | |
| AGAATCAACACACTAAGGAG+TGG | + | chr7.4:51762647-51762666 | MS.gene043668:intron | 40.0% | |
| AGGTTTATTGCCAAGATCGT+TGG | - | chr7.4:51761085-51761104 | None:intergenic | 40.0% | |
| ATCTGGTAAGCTGCAAACAA+AGG | + | chr7.4:51761583-51761602 | MS.gene043668:intron | 40.0% | |
| ATTCCATCAAGTGAAGCTCA+GGG | - | chr7.4:51762881-51762900 | None:intergenic | 40.0% | |
| CAAGCAGCATCAATGTATGA+TGG | - | chr7.4:51761561-51761580 | None:intergenic | 40.0% | |
| CAGAACATACCAAGTGAGTT+TGG | + | chr7.4:51762288-51762307 | MS.gene043668:intron | 40.0% | |
| CCAAAGAGTTGAAGCCAAAA+GGG | + | chr7.4:51761056-51761075 | MS.gene043668:CDS | 40.0% | |
| GAATGTTGCAGGAAAGCAAT+TGG | + | chr7.4:51761455-51761474 | MS.gene043668:intron | 40.0% | |
| GCAATTGGCTATTGCTAAGA+AGG | + | chr7.4:51761470-51761489 | MS.gene043668:CDS | 40.0% | |
| GCTCAAAATCATGCATGAAC+TGG | - | chr7.4:51762775-51762794 | None:intergenic | 40.0% | |
| GGCTAGGTTATACTTCTTCA+CGG | - | chr7.4:51761714-51761733 | None:intergenic | 40.0% | |
| GGCTGAACTTCAGATTATCA+GGG | - | chr7.4:51761693-51761712 | None:intergenic | 40.0% | |
| TCCAAAGAGTTGAAGCCAAA+AGG | + | chr7.4:51761055-51761074 | MS.gene043668:CDS | 40.0% | |
| TGTGATCAAAGCCTTCATCA+AGG | + | chr7.4:51760667-51760686 | MS.gene043668:CDS | 40.0% | |
| TGTGCAGAATCAACACACTA+AGG | + | chr7.4:51762642-51762661 | MS.gene043668:intron | 40.0% | |
| TTATGGTGCTTGAATGTTGC+AGG | + | chr7.4:51761444-51761463 | MS.gene043668:intron | 40.0% | |
| ! | AAGATCGTTGGATACCCTTT+TGG | - | chr7.4:51761073-51761092 | None:intergenic | 40.0% |
| ! | ACTAAGGAGTGGAGCTATTT+TGG | + | chr7.4:51762658-51762677 | MS.gene043668:intron | 40.0% |
| ! | CATTGATGCTGCTTGTAATC+TGG | + | chr7.4:51761566-51761585 | MS.gene043668:CDS | 40.0% |
| ! | CTTTGGTTGTGATGGTGATT+TGG | - | chr7.4:51762717-51762736 | None:intergenic | 40.0% |
| ! | TGGCTTCAACTCTTTGGAAA+GGG | - | chr7.4:51761053-51761072 | None:intergenic | 40.0% |
| ! | TTGGCTTCAACTCTTTGGAA+AGG | - | chr7.4:51761054-51761073 | None:intergenic | 40.0% |
| !! | AAAAGGGTATCCAACGATCT+TGG | + | chr7.4:51761072-51761091 | MS.gene043668:CDS | 40.0% |
| !! | TAGTGTGTTGATTCTGCACA+AGG | - | chr7.4:51762642-51762661 | None:intergenic | 40.0% |
| !! | TTTTCAAGGGCGAATCATTC+AGG | - | chr7.4:51761772-51761791 | None:intergenic | 40.0% |
| AAGGTTGAAGGATGCTTCCT+GGG | + | chr7.4:51763000-51763019 | MS.gene043668:CDS | 45.0% | |
| ACCAACACAGAGAAGGTTGA+AGG | + | chr7.4:51762988-51763007 | MS.gene043668:CDS | 45.0% | |
| CATTCCATCAAGTGAAGCTC+AGG | - | chr7.4:51762882-51762901 | None:intergenic | 45.0% | |
| CGCATGACAGCAATAAAGGA+TGG | - | chr7.4:51761537-51761556 | None:intergenic | 45.0% | |
| CGGCTGAACTTCAGATTATC+AGG | - | chr7.4:51761694-51761713 | None:intergenic | 45.0% | |
| GGCAAAAAGCAAGGAGAGTT+TGG | + | chr7.4:51762333-51762352 | MS.gene043668:CDS | 45.0% | |
| GGTGATCCCAAGAAAGTTTG+TGG | + | chr7.4:51760798-51760817 | MS.gene043668:intron | 45.0% | |
| GTTCCACCCAAAATCGAACT+CGG | + | chr7.4:51761741-51761760 | MS.gene043668:intron | 45.0% | |
| TCCTTCAACCTTCTCTGTGT+TGG | - | chr7.4:51762992-51763011 | None:intergenic | 45.0% | |
| TCGAAATCTTCATCCTTCGG+AGG | - | chr7.4:51761105-51761124 | None:intergenic | 45.0% | |
| TCTTGGCAATAAACCTCCGA+AGG | + | chr7.4:51761089-51761108 | MS.gene043668:CDS | 45.0% | |
| TGGACGCATGACAGCAATAA+AGG | - | chr7.4:51761541-51761560 | None:intergenic | 45.0% | |
| TTCCACCCAAAATCGAACTC+GGG | + | chr7.4:51761742-51761761 | MS.gene043668:intron | 45.0% | |
| TTCCATCAAGTGAAGCTCAG+GGG | - | chr7.4:51762880-51762899 | None:intergenic | 45.0% | |
| !!! | CCCTTTTGGCTTCAACTCTT+TGG | - | chr7.4:51761059-51761078 | None:intergenic | 45.0% |
| AGACTCCAAGTGGTGCAAAG+TGG | + | chr7.4:51760860-51760879 | MS.gene043668:CDS | 50.0% | |
| GAAGGTTGAAGGATGCTTCC+TGG | + | chr7.4:51762999-51763018 | MS.gene043668:CDS | 50.0% | |
| GTGTTAATCCTCCGGTTCCT+GGG | + | chr7.4:51761658-51761677 | MS.gene043668:intron | 50.0% | |
| TGTGTTAATCCTCCGGTTCC+TGG | + | chr7.4:51761657-51761676 | MS.gene043668:intron | 50.0% | |
| ! | AACCCGAGTTCGATTTTGGG+TGG | - | chr7.4:51761747-51761766 | None:intergenic | 50.0% |
| ! | GCGAACCCGAGTTCGATTTT+GGG | - | chr7.4:51761750-51761769 | None:intergenic | 50.0% |
| ! | GGGTGGAACAATTTTGGGCT+AGG | - | chr7.4:51761730-51761749 | None:intergenic | 50.0% |
| AGGATGCTTCCTGGGTCTTG+AGG | + | chr7.4:51763008-51763027 | MS.gene043668:CDS | 55.0% | |
| CAAGGAGAGTTTGGCCTGCA+AGG | + | chr7.4:51762342-51762361 | MS.gene043668:CDS | 55.0% | |
| GGATGCTTCCTGGGTCTTGA+GGG | + | chr7.4:51763009-51763028 | MS.gene043668:CDS | 55.0% | |
| TGCCCCTGAGCTTCACTTGA+TGG | + | chr7.4:51762875-51762894 | MS.gene043668:intron | 55.0% | |
| ! | GGCGAACCCGAGTTCGATTT+TGG | - | chr7.4:51761751-51761770 | None:intergenic | 55.0% |
| ATCCTCCGGTTCCTGGGAGA+AGG | + | chr7.4:51761664-51761683 | MS.gene043668:intron | 60.0% | |
| TCCTCCGGTTCCTGGGAGAA+GGG | + | chr7.4:51761665-51761684 | MS.gene043668:intron | 60.0% | |
| TGCTTCCTGGGTCTTGAGGG+AGG | + | chr7.4:51763012-51763031 | MS.gene043668:CDS | 60.0% | |
| ! | TATCAGGGCGCCCTTCTCCC+AGG | - | chr7.4:51761678-51761697 | None:intergenic | 65.0% |
| GCCCTTCTCCCAGGAACCGG+AGG | - | chr7.4:51761669-51761688 | None:intergenic | 70.0% | |
| GGCGCCCTTCTCCCAGGAAC+CGG | - | chr7.4:51761672-51761691 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 51760625 | 51763038 | 51760625 | ID=MS.gene043668 |
| chr7.4 | mRNA | 51760625 | 51763038 | 51760625 | ID=MS.gene043668.t1;Parent=MS.gene043668 |
| chr7.4 | exon | 51760625 | 51760696 | 51760625 | ID=MS.gene043668.t1.exon1;Parent=MS.gene043668.t1 |
| chr7.4 | CDS | 51760625 | 51760696 | 51760625 | ID=cds.MS.gene043668.t1;Parent=MS.gene043668.t1 |
| chr7.4 | exon | 51760799 | 51761267 | 51760799 | ID=MS.gene043668.t1.exon2;Parent=MS.gene043668.t1 |
| chr7.4 | CDS | 51760799 | 51761267 | 51760799 | ID=cds.MS.gene043668.t1;Parent=MS.gene043668.t1 |
| chr7.4 | exon | 51761466 | 51761587 | 51761466 | ID=MS.gene043668.t1.exon3;Parent=MS.gene043668.t1 |
| chr7.4 | CDS | 51761466 | 51761587 | 51761466 | ID=cds.MS.gene043668.t1;Parent=MS.gene043668.t1 |
| chr7.4 | exon | 51762291 | 51762363 | 51762291 | ID=MS.gene043668.t1.exon4;Parent=MS.gene043668.t1 |
| chr7.4 | CDS | 51762291 | 51762363 | 51762291 | ID=cds.MS.gene043668.t1;Parent=MS.gene043668.t1 |
| chr7.4 | exon | 51762526 | 51762571 | 51762526 | ID=MS.gene043668.t1.exon5;Parent=MS.gene043668.t1 |
| chr7.4 | CDS | 51762526 | 51762571 | 51762526 | ID=cds.MS.gene043668.t1;Parent=MS.gene043668.t1 |
| chr7.4 | exon | 51762978 | 51763038 | 51762978 | ID=MS.gene043668.t1.exon6;Parent=MS.gene043668.t1 |
| chr7.4 | CDS | 51762978 | 51763038 | 51762978 | ID=cds.MS.gene043668.t1;Parent=MS.gene043668.t1 |
| Gene Sequence |
| Protein sequence |
