AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043683


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043683.t1 MTR_7g050580 88.372 172 18 2 16 187 136 305 1.63e-94 288
MS.gene043683.t1 MTR_4g055800 63.281 256 50 5 216 466 77 293 6.71e-91 278
MS.gene043683.t1 MTR_7g050560 66.120 183 44 5 18 185 124 303 8.19e-73 233
MS.gene043683.t1 MTR_7g050590 65.241 187 46 6 16 186 111 294 1.99e-72 231
MS.gene043683.t1 MTR_3g098790 65.922 179 52 2 16 186 136 313 1.65e-71 229
MS.gene043683.t1 MTR_7g050710 65.775 187 47 4 16 186 136 321 5.10e-70 226
MS.gene043683.t1 MTR_8g461300 52.850 193 67 7 294 465 9 198 2.05e-47 162
MS.gene043683.t1 MTR_7g050720 47.253 182 71 7 17 174 137 317 2.01e-40 147
MS.gene043683.t1 MTR_3g080680 35.821 201 107 7 282 465 3 198 5.64e-25 102
MS.gene043683.t1 MTR_3g082420 40.645 155 74 5 322 463 67 216 1.79e-24 101
MS.gene043683.t1 MTR_3g082340 40.645 155 74 5 322 463 68 217 3.03e-24 100
MS.gene043683.t1 MTR_1g108780 37.410 139 66 6 35 172 172 290 8.25e-17 82.8
MS.gene043683.t1 MTR_3g083080 34.615 156 78 6 308 451 46 189 1.77e-15 75.5
MS.gene043683.t1 MTR_1g035460 40.179 112 55 4 61 172 188 287 5.49e-15 77.0
MS.gene043683.t1 MTR_8g103940 36.364 143 71 6 31 172 208 331 4.23e-14 74.7
MS.gene043683.t1 MTR_3g083030 35.971 139 66 6 308 436 71 196 2.45e-13 69.7
MS.gene043683.t1 MTR_3g083050 35.252 139 67 6 308 436 48 173 6.19e-13 68.2
MS.gene043683.t1 MTR_4g068320 31.783 129 81 3 44 172 267 388 6.33e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 103 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACTTTCTTTGCAGTATT+TGG 0.131197 7.4:+52152144 None:intergenic
GCAGAAATCGGTATCATATT+TGG 0.167599 7.4:-52152086 MS.gene043683:CDS
GCTAACTCCTCCTTTGAATT+TGG 0.172588 7.4:-52153924 MS.gene043683:CDS
TTCAATTTCGGTTCCTGTTC+CGG 0.192028 7.4:+52152112 None:intergenic
AAGAAGAGGAGGAGGATAAC+TGG 0.231959 7.4:-52151919 MS.gene043683:CDS
GGAGAAGAAGGAGGAGATAT+TGG 0.249675 7.4:-52151960 MS.gene043683:CDS
GATTTCTGCCGTTTCAATTT+CGG 0.268887 7.4:+52152100 None:intergenic
GAGGAGGATAACTGGGATAA+GGG 0.302652 7.4:-52151911 MS.gene043683:CDS
GAACGCCGCTTATACATAAA+TGG 0.335076 7.4:+52151812 None:intergenic
TCCTCGTTTATATAGGTTTA+GGG 0.341981 7.4:-52152252 MS.gene043683:intron
AGGAGGATAACTGGGATAAG+GGG 0.361769 7.4:-52151910 MS.gene043683:CDS
AGTAGTAGTTGTGTTAAAGT+TGG 0.371498 7.4:-52153900 MS.gene043683:CDS
CCACCTGGTTGCGATTTAAC+TGG 0.372678 7.4:-52151589 MS.gene043683:CDS
CGTTGAACATAGATTTCTAA+TGG 0.376360 7.4:-52153490 MS.gene043683:intron
TTGACTGTCGTTCTCATACT+TGG 0.379474 7.4:+52151835 None:intergenic
CAGAAATCGGTATCATATTT+GGG 0.381715 7.4:-52152085 MS.gene043683:CDS
ATGAAGGAGTTTGGCCTACT+AGG 0.386073 7.4:-52153083 MS.gene043683:CDS
AGGTGTTAAATGAAGGAGTT+TGG 0.387476 7.4:-52153092 MS.gene043683:CDS
GAAATTGAAACGGCAGAAAT+CGG 0.396637 7.4:-52152098 MS.gene043683:CDS
TGGTAATAGACACTTTGATT+TGG 0.405062 7.4:-52153142 MS.gene043683:CDS
GGAGGAGGATAACTGGGATA+AGG 0.405675 7.4:-52151912 MS.gene043683:CDS
TGTGAAATCGGAACCGGAAC+AGG 0.406008 7.4:-52152125 MS.gene043683:CDS
GTCTGGAAAGTTGTTAGATC+AGG 0.411819 7.4:+52151292 None:intergenic
CTGCAAAGAAAGTGTGAAAT+CGG 0.414840 7.4:-52152137 MS.gene043683:CDS
ACACTTTGTGTTGTCATTGT+CGG 0.416261 7.4:+52152903 None:intergenic
ACTTTATGAAACACAAAAGT+TGG 0.418561 7.4:+52151400 None:intergenic
GCTGGTATTTCTTTAACTGC+TGG 0.423873 7.4:-52151358 MS.gene043683:CDS
GTTTATATAGGTTTAGGGTT+AGG 0.425334 7.4:-52152247 MS.gene043683:intron
ATAGTGATTATGAGGAATAC+TGG 0.428542 7.4:-52151859 MS.gene043683:CDS
GTAGTAGTTGTGTTAAAGTT+GGG 0.429796 7.4:-52153899 MS.gene043683:CDS
GGAGGAAGAAGAAGAGGAGG+AGG 0.437915 7.4:-52151927 MS.gene043683:CDS
CTGTGTTTAAGAACCAGGCT+TGG 0.448983 7.4:-52151781 MS.gene043683:CDS
CATCTTGAACTACATGAGTC+TGG 0.449948 7.4:+52151275 None:intergenic
CGAGTTTGCTTTGAATAAGC+AGG 0.455151 7.4:-52151509 MS.gene043683:intron
AGAAGAGGAGGAGGATAACT+GGG 0.459973 7.4:-52151918 MS.gene043683:CDS
CGAAGGAGGAGGATATCATC+TGG 0.460292 7.4:-52151982 MS.gene043683:CDS
GTATTTCTTTAACTGCTGGT+AGG 0.460852 7.4:-52151354 MS.gene043683:CDS
AGAAGAGGAGGAAGAAGAAG+AGG 0.467774 7.4:-52151933 MS.gene043683:CDS
TATTTCTTTAACTGCTGGTA+GGG 0.470429 7.4:-52151353 MS.gene043683:CDS
GGAGGATAACTGGGATAAGG+GGG 0.474419 7.4:-52151909 MS.gene043683:CDS
GGAGATATTGGAAGAAGAAG+AGG 0.477884 7.4:-52151948 MS.gene043683:CDS
AGAGGAGGAAGAAGAAGAGG+AGG 0.486639 7.4:-52151930 MS.gene043683:CDS
TTTGATTTGGAGAAGAAAAG+AGG 0.488349 7.4:-52153129 MS.gene043683:CDS
GGATATCATCTGGGAGAAGA+AGG 0.489838 7.4:-52151972 MS.gene043683:CDS
ATCAAACTGTAATCCTGTAC+TGG 0.494341 7.4:+52153044 None:intergenic
TTCATATGAGAAGGATAAGC+AGG 0.503919 7.4:-52152038 MS.gene043683:CDS
CCTCACGATCCAACCAAGCC+TGG 0.508758 7.4:+52151768 None:intergenic
GTTTAAGAACCAGGCTTGGT+TGG 0.512575 7.4:-52151777 MS.gene043683:CDS
CAGACTCATGTAGTTCAAGA+TGG 0.513524 7.4:-52151274 MS.gene043683:CDS
CGCATGACAGCAACAAAGGA+TGG 0.517132 7.4:+52153522 None:intergenic
AGAAAGTGTGAAATCGGAAC+CGG 0.517778 7.4:-52152131 MS.gene043683:CDS
TTCTGAGTATAGTGATTATG+AGG 0.519008 7.4:-52151867 MS.gene043683:CDS
TCTATCAGGAAGTCCAGTAC+AGG 0.523027 7.4:-52153057 MS.gene043683:CDS
GAGGACAATAACTTGAAAGT+TGG 0.523457 7.4:-52152994 MS.gene043683:CDS
TGGTTCTGTGTTTAAGAACC+AGG 0.524512 7.4:-52151786 MS.gene043683:CDS
ATGTATAAGCGGCGTTCTGA+TGG 0.531157 7.4:-52151806 MS.gene043683:CDS
TAAAGAAATACCAGCAGGAT+GGG 0.537748 7.4:+52151366 None:intergenic
GATATTGGAAGAAGAAGAGG+AGG 0.537799 7.4:-52151945 MS.gene043683:CDS
AACAGGAACCGAAATTGAAA+CGG 0.540564 7.4:-52152108 MS.gene043683:CDS
GTCAAGTGTACCCATCCTGC+TGG 0.541207 7.4:-52151376 MS.gene043683:CDS
ATCGGTATCATATTTGGGAT+CGG 0.544496 7.4:-52152080 MS.gene043683:CDS
TATATAGGTTTAGGGTTAGG+TGG 0.547778 7.4:-52152244 MS.gene043683:intron
TTAAATCGCAACCAGGTGGA+TGG 0.551434 7.4:+52151593 None:intergenic
ACTACTACTTCCAAATTCAA+AGG 0.555763 7.4:+52153914 None:intergenic
TGATATCACAAGTGGATGGA+AGG 0.558355 7.4:-52153025 MS.gene043683:CDS
CACGAAGGAGGAGGATAAGC+GGG 0.558411 7.4:-52152011 MS.gene043683:CDS
CTCATCTTCATCTAAATCGA+GGG 0.563365 7.4:+52151555 None:intergenic
TAAATCGCAACCAGGTGGAT+GGG 0.565179 7.4:+52151594 None:intergenic
GATGCTATCGCCCATCCACC+TGG 0.569398 7.4:-52151604 MS.gene043683:CDS
CGATGAAGATTCATATGAGA+AGG 0.570440 7.4:-52152047 MS.gene043683:CDS
TTACAGTTTGATATCACAAG+TGG 0.574741 7.4:-52153033 MS.gene043683:CDS
CCAGGCTTGGTTGGATCGTG+AGG 0.575302 7.4:-52151768 MS.gene043683:CDS
GTCAACCATTTATGTATAAG+CGG 0.575552 7.4:-52151817 MS.gene043683:CDS
CGTTGTTCACATCTTTCGAG+AGG 0.576702 7.4:-52152926 MS.gene043683:CDS
GCGGGACTTCACGAAGGAGG+AGG 0.581793 7.4:-52151993 MS.gene043683:CDS
GCAGGACTTCACGAAGGAGG+AGG 0.581793 7.4:-52152020 MS.gene043683:CDS
AATATACCACGTAATACGTA+TGG 0.585811 7.4:-52153162 MS.gene043683:CDS
AGTTTGATATCACAAGTGGA+TGG 0.587991 7.4:-52153029 MS.gene043683:CDS
TTCCTGATAGAAAACCTAGT+AGG 0.591449 7.4:+52153069 None:intergenic
ACATTGAAACACAACACGGA+AGG 0.598710 7.4:+52152188 None:intergenic
GCAGTTAAAGAAATACCAGC+AGG 0.600140 7.4:+52151361 None:intergenic
CCTGGTTGCGATTTAACTGG+CGG 0.603828 7.4:-52151586 MS.gene043683:CDS
CATTGAAACACAACACGGAA+GGG 0.611171 7.4:+52152189 None:intergenic
TTGTGTTTCAATGTCGACAA+TGG 0.611717 7.4:-52152179 MS.gene043683:CDS
TCACGAAGGAGGAGGATAAG+CGG 0.611757 7.4:-52152012 MS.gene043683:CDS
GAAGGAGGAGGATATCATCT+GGG 0.612094 7.4:-52151981 MS.gene043683:CDS
CCGCCAGTTAAATCGCAACC+AGG 0.615393 7.4:+52151586 None:intergenic
TTAAAGAAATACCAGCAGGA+TGG 0.630544 7.4:+52151365 None:intergenic
AAATCACAAAAGAAGTCCAA+AGG 0.633010 7.4:-52153876 MS.gene043683:intron
CTATTACCATACGTATTACG+TGG 0.633917 7.4:+52153156 None:intergenic
TGCACGCATGACAGCAACAA+AGG 0.634058 7.4:+52153518 None:intergenic
GCTCATCTTCATCTAAATCG+AGG 0.638236 7.4:+52151554 None:intergenic
TATCATCTGGGAGAAGAAGG+AGG 0.641903 7.4:-52151969 MS.gene043683:CDS
ACTACTTCCAAATTCAAAGG+AGG 0.654882 7.4:+52153917 None:intergenic
TAAGCAGGACTTCACGAAGG+AGG 0.657823 7.4:-52152023 MS.gene043683:CDS
TAAGCGGGACTTCACGAAGG+AGG 0.661925 7.4:-52151996 MS.gene043683:CDS
TCATCTTCATCTAAATCGAG+GGG 0.668232 7.4:+52151556 None:intergenic
TGGATGGAAGGCATTTGCAG+AGG 0.673309 7.4:-52153013 MS.gene043683:CDS
TCGAAAGATGTGAACAACGA+AGG 0.676161 7.4:+52152930 None:intergenic
CCAGTTAAATCGCAACCAGG+TGG 0.680990 7.4:+52151589 None:intergenic
GGATAAGCGGGACTTCACGA+AGG 0.690741 7.4:-52151999 MS.gene043683:CDS
GGATAAGCAGGACTTCACGA+AGG 0.708669 7.4:-52152026 MS.gene043683:CDS
GTCGACATTGAAACACAACA+CGG 0.778812 7.4:+52152184 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAAATAATTTAACG+TGG - chr7.4:52151967-52151986 MS.gene043683:CDS 10.0%
!!! AAAATATATTTTTTTACCTT+TGG + chr7.4:52151483-52151502 None:intergenic 10.0%
!! AAAAATATTTACCTCAAAAT+TGG + chr7.4:52151276-52151295 None:intergenic 15.0%
!! TTCTTCTTACTTATTTAATT+AGG - chr7.4:52153915-52153934 MS.gene043683:CDS 15.0%
!! AACAAAAGGTTAAAACAAAA+TGG - chr7.4:52152661-52152680 MS.gene043683:intron 20.0%
!!! AAAATAATTTAACGTGGTTT+TGG - chr7.4:52151973-52151992 MS.gene043683:CDS 20.0%
!!! CATTTGTTTTTTCTTTTGTT+TGG - chr7.4:52152152-52152171 MS.gene043683:CDS 20.0%
!!! GAAGTTTTTGAAATCATTAT+TGG - chr7.4:52152591-52152610 MS.gene043683:intron 20.0%
! AACTTAGATTTGTGAAGTAA+AGG - chr7.4:52152820-52152839 MS.gene043683:intron 25.0%
! ACTTTATGAAACACAAAAGT+TGG + chr7.4:52153943-52153962 None:intergenic 25.0%
! AGAATTATTTCCTTGATCAT+TGG + chr7.4:52151357-52151376 None:intergenic 25.0%
! ATTTGTTCGAATTTACAACA+AGG + chr7.4:52152799-52152818 None:intergenic 25.0%
! CAAGGAAATAATTCTCTAAA+TGG - chr7.4:52151362-52151381 MS.gene043683:CDS 25.0%
! GGTTAAAACAAAATGGTTAT+TGG - chr7.4:52152668-52152687 MS.gene043683:intron 25.0%
! GTTAATGCATAAAAAATGTG+TGG + chr7.4:52152133-52152152 None:intergenic 25.0%
! TAAACAACTAGAGAAAGATT+TGG + chr7.4:52151914-52151933 None:intergenic 25.0%
! TAGTATGCATTAAATCTAGT+AGG - chr7.4:52151618-52151637 MS.gene043683:intron 25.0%
! TCGTGAAACAAAAAAACTAT+TGG - chr7.4:52152707-52152726 MS.gene043683:intron 25.0%
!! ACAAGTAAAATATTTTGCAC+AGG - chr7.4:52152935-52152954 MS.gene043683:CDS 25.0%
!! TGAAAAAACTTCCAATTTTG+AGG - chr7.4:52151262-52151281 MS.gene043683:CDS 25.0%
!! TTTTAACCTTTTGTTCTATG+TGG + chr7.4:52152656-52152675 None:intergenic 25.0%
!!! AAACCATTGATTCTGTTTTT+TGG - chr7.4:52152767-52152786 MS.gene043683:intron 25.0%
!!! AACCATTGATTCTGTTTTTT+GGG - chr7.4:52152768-52152787 MS.gene043683:intron 25.0%
!!! AAGAGGAGATATTTATTTTC+AGG - chr7.4:52152228-52152247 MS.gene043683:CDS 25.0%
!!! CTCTTAATTTTGATTGATTC+TGG - chr7.4:52153693-52153712 MS.gene043683:intron 25.0%
!!! TATTTTCAGGTGTTAAATGA+AGG - chr7.4:52152241-52152260 MS.gene043683:intron 25.0%
!!! TTTTCTTTTGGTTTTGGTTT+GGG + chr7.4:52153052-52153071 None:intergenic 25.0%
AAAAGAAAAGGAATGGAATG+GGG - chr7.4:52153063-52153082 MS.gene043683:CDS 30.0%
AAATCACAAAAGAAGTCCAA+AGG - chr7.4:52151464-52151483 MS.gene043683:intron 30.0%
AATATACCACGTAATACGTA+TGG - chr7.4:52152178-52152197 MS.gene043683:CDS 30.0%
ACTACTACTTCCAAATTCAA+AGG + chr7.4:52151429-52151448 None:intergenic 30.0%
AGTAGTAGTTGTGTTAAAGT+TGG - chr7.4:52151440-52151459 MS.gene043683:intron 30.0%
ATAGTGATTATGAGGAATAC+TGG - chr7.4:52153481-52153500 MS.gene043683:intron 30.0%
ATATTTCATGATCATCTTCC+AGG + chr7.4:52151700-52151719 None:intergenic 30.0%
CAAAACCAAAAGAAAAGGAA+TGG - chr7.4:52153056-52153075 MS.gene043683:CDS 30.0%
CAAAAGAAAAGGAATGGAAT+GGG - chr7.4:52153062-52153081 MS.gene043683:CDS 30.0%
CAAAAGAGTTGAAGCTAAAA+CGG - chr7.4:52151328-52151347 MS.gene043683:CDS 30.0%
CAAACCAAAACCAAAAGAAA+AGG - chr7.4:52153051-52153070 MS.gene043683:CDS 30.0%
CAGAAATCGGTATCATATTT+GGG - chr7.4:52153255-52153274 MS.gene043683:intron 30.0%
CATATCTAAAAAGCAGAAGA+TGG + chr7.4:52151244-52151263 None:intergenic 30.0%
CATCTCATGTTAAGTATAGT+AGG - chr7.4:52151641-52151660 MS.gene043683:intron 30.0%
CGTTGAACATAGATTTCTAA+TGG - chr7.4:52151850-52151869 MS.gene043683:CDS 30.0%
GTAGTAGTTGTGTTAAAGTT+GGG - chr7.4:52151441-52151460 MS.gene043683:intron 30.0%
GTCAACCATTTATGTATAAG+CGG - chr7.4:52153523-52153542 MS.gene043683:CDS 30.0%
TAAAAATCAATCCATGTGGA+GGG - chr7.4:52152977-52152996 MS.gene043683:CDS 30.0%
TATTTCTTTAACTGCTGGTA+GGG - chr7.4:52153987-52154006 MS.gene043683:intron 30.0%
TCCTCGTTTATATAGGTTTA+GGG - chr7.4:52153088-52153107 MS.gene043683:CDS 30.0%
TCTATGAAGTTAGAACAAGA+TGG + chr7.4:52152548-52152567 None:intergenic 30.0%
TGGTAATAGACACTTTGATT+TGG - chr7.4:52152198-52152217 MS.gene043683:CDS 30.0%
TGTGTAAAAATCAATCCATG+TGG - chr7.4:52152973-52152992 MS.gene043683:CDS 30.0%
TTACAGTTTGATATCACAAG+TGG - chr7.4:52152307-52152326 MS.gene043683:intron 30.0%
TTCCCAAAAAACAGAATCAA+TGG + chr7.4:52152773-52152792 None:intergenic 30.0%
TTCTAACCACATAGAACAAA+AGG - chr7.4:52152647-52152666 MS.gene043683:intron 30.0%
TTCTAACTTCATAGAACGAT+TGG - chr7.4:52152553-52152572 MS.gene043683:intron 30.0%
TTCTGAGTATAGTGATTATG+AGG - chr7.4:52153473-52153492 MS.gene043683:intron 30.0%
! CTAGAGAAAGATTTGGTTAT+TGG + chr7.4:52151907-52151926 None:intergenic 30.0%
! GTTTATATAGGTTTAGGGTT+AGG - chr7.4:52153093-52153112 MS.gene043683:CDS 30.0%
! GTTTGAGGTTACTTTGATAT+TGG + chr7.4:52152855-52152874 None:intergenic 30.0%
! TCTAGTTGTTTACTAGCTTA+AGG - chr7.4:52151922-52151941 MS.gene043683:CDS 30.0%
! TTTAGCAGGTCTTGATTTTT+AGG - chr7.4:52151672-52151691 MS.gene043683:intron 30.0%
!! ACATTACTTTTCAAGCAACA+GGG - chr7.4:52154016-52154035 MS.gene043683:intron 30.0%
!! AGTAGGCATTAAATTTTAGC+AGG - chr7.4:52151658-52151677 MS.gene043683:intron 30.0%
!! CACTTGTTTTTCTGCAAAAT+TGG + chr7.4:52151738-52151757 None:intergenic 30.0%
!! TACATTACTTTTCAAGCAAC+AGG - chr7.4:52154015-52154034 MS.gene043683:intron 30.0%
!! TTCTTTTCTTGAAGTGTCAA+GGG - chr7.4:52151585-52151604 MS.gene043683:CDS 30.0%
!! TTTCTTTTCTTGAAGTGTCA+AGG - chr7.4:52151584-52151603 MS.gene043683:CDS 30.0%
!! TTTGATTTGGAGAAGAAAAG+AGG - chr7.4:52152211-52152230 MS.gene043683:CDS 30.0%
!!! CATTCCTTTTCTTTTGGTTT+TGG + chr7.4:52153058-52153077 None:intergenic 30.0%
!!! CTTTTCTTTTGGTTTTGGTT+TGG + chr7.4:52153053-52153072 None:intergenic 30.0%
!!! TATTTTTGAAAAGAGTGCCT+TGG - chr7.4:52151289-52151308 MS.gene043683:CDS 30.0%
!!! TGTTTTGTTGTTGTTGTTTG+AGG + chr7.4:52152870-52152889 None:intergenic 30.0%
AAAAATCAATCCATGTGGAG+GGG - chr7.4:52152978-52152997 MS.gene043683:CDS 35.0%
AACAGGAACCGAAATTGAAA+CGG - chr7.4:52153232-52153251 MS.gene043683:intron 35.0%
ACACTTTGTGTTGTCATTGT+CGG + chr7.4:52152440-52152459 None:intergenic 35.0%
ACCCTAAACCTATATAAACG+AGG + chr7.4:52153092-52153111 None:intergenic 35.0%
ACTACTTCCAAATTCAAAGG+AGG + chr7.4:52151426-52151445 None:intergenic 35.0%
AGGTGTTAAATGAAGGAGTT+TGG - chr7.4:52152248-52152267 MS.gene043683:intron 35.0%
AGTTTGATATCACAAGTGGA+TGG - chr7.4:52152311-52152330 MS.gene043683:intron 35.0%
ATCAAACTGTAATCCTGTAC+TGG + chr7.4:52152299-52152318 None:intergenic 35.0%
CACACTTTCTTTGCAGTATT+TGG + chr7.4:52153199-52153218 None:intergenic 35.0%
CCAAAAGAAAAGGAATGGAA+TGG - chr7.4:52153061-52153080 MS.gene043683:CDS 35.0%
CGATGAAGATTCATATGAGA+AGG - chr7.4:52153293-52153312 MS.gene043683:intron 35.0%
CTAGAAACCAAGTGTAAAAG+CGG - chr7.4:52152900-52152919 MS.gene043683:CDS 35.0%
CTATTACCATACGTATTACG+TGG + chr7.4:52152187-52152206 None:intergenic 35.0%
CTCATCTTCATCTAAATCGA+GGG + chr7.4:52153788-52153807 None:intergenic 35.0%
GAAATTGAAACGGCAGAAAT+CGG - chr7.4:52153242-52153261 MS.gene043683:intron 35.0%
GAGGACAATAACTTGAAAGT+TGG - chr7.4:52152346-52152365 MS.gene043683:intron 35.0%
GCAGAAATCGGTATCATATT+TGG - chr7.4:52153254-52153273 MS.gene043683:intron 35.0%
GTAAAAATCAATCCATGTGG+AGG - chr7.4:52152976-52152995 MS.gene043683:CDS 35.0%
GTATTTCTTTAACTGCTGGT+AGG - chr7.4:52153986-52154005 MS.gene043683:intron 35.0%
GTCCTCGTTTATATAGGTTT+AGG - chr7.4:52153087-52153106 MS.gene043683:CDS 35.0%
TAAAGAAATACCAGCAGGAT+GGG + chr7.4:52153977-52153996 None:intergenic 35.0%
TAGAAACCAAGTGTAAAAGC+GGG - chr7.4:52152901-52152920 MS.gene043683:CDS 35.0%
TCATCTTCATCTAAATCGAG+GGG + chr7.4:52153787-52153806 None:intergenic 35.0%
TTAAAGAAATACCAGCAGGA+TGG + chr7.4:52153978-52153997 None:intergenic 35.0%
TTCATATGAGAAGGATAAGC+AGG - chr7.4:52153302-52153321 MS.gene043683:intron 35.0%
TTCCTGATAGAAAACCTAGT+AGG + chr7.4:52152274-52152293 None:intergenic 35.0%
TTGTGTTTCAATGTCGACAA+TGG - chr7.4:52153161-52153180 MS.gene043683:CDS 35.0%
! ATCGGTATCATATTTGGGAT+CGG - chr7.4:52153260-52153279 MS.gene043683:intron 35.0%
! CCATTCCATTCCTTTTCTTT+TGG + chr7.4:52153064-52153083 None:intergenic 35.0%
! CTGCAAAGAAAGTGTGAAAT+CGG - chr7.4:52153203-52153222 MS.gene043683:intron 35.0%
! GATTTCTGCCGTTTCAATTT+CGG + chr7.4:52153243-52153262 None:intergenic 35.0%
! GATTTTGCTCTTTCAAGAGT+TGG + chr7.4:52151782-52151801 None:intergenic 35.0%
! TATATAGGTTTAGGGTTAGG+TGG - chr7.4:52153096-52153115 MS.gene043683:CDS 35.0%
! TTAGCTTCAACTCTTTTGGA+AGG + chr7.4:52151326-52151345 None:intergenic 35.0%
! TTTGCTTTGAATAAGCAGGT+TGG - chr7.4:52153835-52153854 MS.gene043683:intron 35.0%
!! AATTTACCTCGGTGCAATTT+TGG - chr7.4:52152037-52152056 MS.gene043683:CDS 35.0%
!! TAGCTTCAACTCTTTTGGAA+GGG + chr7.4:52151325-52151344 None:intergenic 35.0%
!!! CGTTTTAGCTTCAACTCTTT+TGG + chr7.4:52151330-52151349 None:intergenic 35.0%
!!! TTTTTTCCCGCTTTTACACT+TGG + chr7.4:52152910-52152929 None:intergenic 35.0%
AAAACGGTCTCCAATGATCA+AGG - chr7.4:52151344-52151363 MS.gene043683:CDS 40.0%
ACATTGAAACACAACACGGA+AGG + chr7.4:52153155-52153174 None:intergenic 40.0%
ATTGTATCCGAGACCTTAAG+AGG + chr7.4:52152020-52152039 None:intergenic 40.0%
CAGACTCATGTAGTTCAAGA+TGG - chr7.4:52154066-52154085 MS.gene043683:intron 40.0%
CATCTTGAACTACATGAGTC+TGG + chr7.4:52154068-52154087 None:intergenic 40.0%
CATTGAAACACAACACGGAA+GGG + chr7.4:52153154-52153173 None:intergenic 40.0%
GAACGCCGCTTATACATAAA+TGG + chr7.4:52153531-52153550 None:intergenic 40.0%
GATATTGGAAGAAGAAGAGG+AGG - chr7.4:52153395-52153414 MS.gene043683:intron 40.0%
GCAGTTAAAGAAATACCAGC+AGG + chr7.4:52153982-52154001 None:intergenic 40.0%
GCTAACTCCTCCTTTGAATT+TGG - chr7.4:52151416-52151435 MS.gene043683:intron 40.0%
GCTCATCTTCATCTAAATCG+AGG + chr7.4:52153789-52153808 None:intergenic 40.0%
GCTGGTATTTCTTTAACTGC+TGG - chr7.4:52153982-52154001 MS.gene043683:intron 40.0%
GGAGATATTGGAAGAAGAAG+AGG - chr7.4:52153392-52153411 MS.gene043683:intron 40.0%
GTCGACATTGAAACACAACA+CGG + chr7.4:52153159-52153178 None:intergenic 40.0%
GTCTCGGATACAATTTACCT+CGG - chr7.4:52152026-52152045 MS.gene043683:CDS 40.0%
GTCTGGAAAGTTGTTAGATC+AGG + chr7.4:52154051-52154070 None:intergenic 40.0%
TCGAAAGATGTGAACAACGA+AGG + chr7.4:52152413-52152432 None:intergenic 40.0%
TGATATCACAAGTGGATGGA+AGG - chr7.4:52152315-52152334 MS.gene043683:intron 40.0%
TTCAATTTCGGTTCCTGTTC+CGG + chr7.4:52153231-52153250 None:intergenic 40.0%
TTGACTGTCGTTCTCATACT+TGG + chr7.4:52153508-52153527 None:intergenic 40.0%
! AGAAAGTGTGAAATCGGAAC+CGG - chr7.4:52153209-52153228 MS.gene043683:intron 40.0%
! CGAGTTTGCTTTGAATAAGC+AGG - chr7.4:52153831-52153850 MS.gene043683:intron 40.0%
! TGGTTCTGTGTTTAAGAACC+AGG - chr7.4:52153554-52153573 MS.gene043683:CDS 40.0%
!! ACTTTTCAAGCAACAGGGAA+AGG - chr7.4:52154021-52154040 MS.gene043683:intron 40.0%
!! GGTCTTGATTTTTAGGAACC+TGG - chr7.4:52151679-52151698 MS.gene043683:intron 40.0%
!! TTTTCTTGAAGTGTCAAGGG+AGG - chr7.4:52151588-52151607 MS.gene043683:CDS 40.0%
!!! CGCAGAGTTTTTTGAGAGTA+GGG + chr7.4:52153813-52153832 None:intergenic 40.0%
!!! TCGCAGAGTTTTTTGAGAGT+AGG + chr7.4:52153814-52153833 None:intergenic 40.0%
AAGAAGAGGAGGAGGATAAC+TGG - chr7.4:52153421-52153440 MS.gene043683:intron 45.0%
AGAAGAGGAGGAAGAAGAAG+AGG - chr7.4:52153407-52153426 MS.gene043683:intron 45.0%
AGAAGAGGAGGAGGATAACT+GGG - chr7.4:52153422-52153441 MS.gene043683:intron 45.0%
AGGAGGATAACTGGGATAAG+GGG - chr7.4:52153430-52153449 MS.gene043683:intron 45.0%
ATGAAGGAGTTTGGCCTACT+AGG - chr7.4:52152257-52152276 MS.gene043683:intron 45.0%
ATGTATAAGCGGCGTTCTGA+TGG - chr7.4:52153534-52153553 MS.gene043683:CDS 45.0%
CGTTGTTCACATCTTTCGAG+AGG - chr7.4:52152414-52152433 MS.gene043683:intron 45.0%
CTGTGTTTAAGAACCAGGCT+TGG - chr7.4:52153559-52153578 MS.gene043683:CDS 45.0%
CTTAGAGTGTGCTCCTCTTA+AGG - chr7.4:52152004-52152023 MS.gene043683:CDS 45.0%
GAAGGAGGAGGATATCATCT+GGG - chr7.4:52153359-52153378 MS.gene043683:intron 45.0%
GAGGAGGATAACTGGGATAA+GGG - chr7.4:52153429-52153448 MS.gene043683:intron 45.0%
GGAGAAGAAGGAGGAGATAT+TGG - chr7.4:52153380-52153399 MS.gene043683:intron 45.0%
GGATATCATCTGGGAGAAGA+AGG - chr7.4:52153368-52153387 MS.gene043683:intron 45.0%
TAAATCGCAACCAGGTGGAT+GGG + chr7.4:52153749-52153768 None:intergenic 45.0%
TATCATCTGGGAGAAGAAGG+AGG - chr7.4:52153371-52153390 MS.gene043683:intron 45.0%
TCTATCAGGAAGTCCAGTAC+AGG - chr7.4:52152283-52152302 MS.gene043683:intron 45.0%
TTAAATCGCAACCAGGTGGA+TGG + chr7.4:52153750-52153769 None:intergenic 45.0%
! CTTAAGAGGAGCACACTCTA+AGG + chr7.4:52152006-52152025 None:intergenic 45.0%
! GGCCTACTAGGTTTTCTATC+AGG - chr7.4:52152269-52152288 MS.gene043683:intron 45.0%
! GTTTAAGAACCAGGCTTGGT+TGG - chr7.4:52153563-52153582 MS.gene043683:CDS 45.0%
! TGGGGTGTCCTCGTTTATAT+AGG - chr7.4:52153081-52153100 MS.gene043683:CDS 45.0%
!! AAAGGTTTGTTACTGGGCCT+GGG - chr7.4:52153001-52153020 MS.gene043683:CDS 45.0%
!! GAGGGGAAAGGTTTGTTACT+GGG - chr7.4:52152995-52153014 MS.gene043683:CDS 45.0%
!! TACCTCGGTGCAATTTTGGT+GGG - chr7.4:52152041-52152060 MS.gene043683:CDS 45.0%
!! TTACCTCGGTGCAATTTTGG+TGG - chr7.4:52152040-52152059 MS.gene043683:CDS 45.0%
!!! CTTTTGGTTTTGGTTTGGGC+TGG + chr7.4:52153048-52153067 None:intergenic 45.0%
!!! GCAATTTTGGTGGGCTAGTT+TGG - chr7.4:52152050-52152069 MS.gene043683:CDS 45.0%
ACAAACCTTTCCCCTCCACA+TGG + chr7.4:52152991-52153010 None:intergenic 50.0%
AGAGGAGGAAGAAGAAGAGG+AGG - chr7.4:52153410-52153429 MS.gene043683:intron 50.0%
CCACCTGGTTGCGATTTAAC+TGG - chr7.4:52153751-52153770 MS.gene043683:intron 50.0%
CCAGTTAAATCGCAACCAGG+TGG + chr7.4:52153754-52153773 None:intergenic 50.0%
CCTGGTTGCGATTTAACTGG+CGG - chr7.4:52153754-52153773 MS.gene043683:intron 50.0%
CGAAGGAGGAGGATATCATC+TGG - chr7.4:52153358-52153377 MS.gene043683:intron 50.0%
CGCATGACAGCAACAAAGGA+TGG + chr7.4:52151821-52151840 None:intergenic 50.0%
CTCTCTCGCGATCTAAGTGT+AGG - chr7.4:52153618-52153637 MS.gene043683:intron 50.0%
GGAGGAGGATAACTGGGATA+AGG - chr7.4:52153428-52153447 MS.gene043683:intron 50.0%
GGAGGATAACTGGGATAAGG+GGG - chr7.4:52153431-52153450 MS.gene043683:intron 50.0%
GGATAAGCAGGACTTCACGA+AGG - chr7.4:52153314-52153333 MS.gene043683:intron 50.0%
GTGTGCTCCTCTTAAGGTCT+CGG - chr7.4:52152010-52152029 MS.gene043683:CDS 50.0%
TAAGCAGGACTTCACGAAGG+AGG - chr7.4:52153317-52153336 MS.gene043683:intron 50.0%
TCAATCCATGTGGAGGGGAA+AGG - chr7.4:52152983-52153002 MS.gene043683:CDS 50.0%
TCACGAAGGAGGAGGATAAG+CGG - chr7.4:52153328-52153347 MS.gene043683:intron 50.0%
TGCACGCATGACAGCAACAA+AGG + chr7.4:52151825-52151844 None:intergenic 50.0%
TGTGAAATCGGAACCGGAAC+AGG - chr7.4:52153215-52153234 MS.gene043683:intron 50.0%
!! GAAAGGTTTGTTACTGGGCC+TGG - chr7.4:52153000-52153019 MS.gene043683:CDS 50.0%
!! GGAAGGGTACTTTGTCTCCA+AGG + chr7.4:52151309-52151328 None:intergenic 50.0%
!! GGAGGGGAAAGGTTTGTTAC+TGG - chr7.4:52152994-52153013 MS.gene043683:CDS 50.0%
!! TGGATGGAAGGCATTTGCAG+AGG - chr7.4:52152327-52152346 MS.gene043683:intron 50.0%
AGCCCACCAAAATTGCACCG+AGG + chr7.4:52152046-52152065 None:intergenic 55.0%
CACGAAGGAGGAGGATAAGC+GGG - chr7.4:52153329-52153348 MS.gene043683:intron 55.0%
CCGCCAGTTAAATCGCAACC+AGG + chr7.4:52153757-52153776 None:intergenic 55.0%
GGAGGAAGAAGAAGAGGAGG+AGG - chr7.4:52153413-52153432 MS.gene043683:intron 55.0%
GGATAAGCGGGACTTCACGA+AGG - chr7.4:52153341-52153360 MS.gene043683:intron 55.0%
GTCAAGTGTACCCATCCTGC+TGG - chr7.4:52153964-52153983 MS.gene043683:intron 55.0%
TAAGCGGGACTTCACGAAGG+AGG - chr7.4:52153344-52153363 MS.gene043683:intron 55.0%
!! GCTTTGTTTATGACCCGCCC+AGG + chr7.4:52153021-52153040 None:intergenic 55.0%
CCTCACGATCCAACCAAGCC+TGG + chr7.4:52153575-52153594 None:intergenic 60.0%
GATGCTATCGCCCATCCACC+TGG - chr7.4:52153736-52153755 MS.gene043683:intron 60.0%
GCAGGACTTCACGAAGGAGG+AGG - chr7.4:52153320-52153339 MS.gene043683:intron 60.0%
! CCAGGCTTGGTTGGATCGTG+AGG - chr7.4:52153572-52153591 MS.gene043683:CDS 60.0%
! GTTTGTTACTGGGCCTGGGC+GGG - chr7.4:52153005-52153024 MS.gene043683:CDS 60.0%
!! GGTTTGTTACTGGGCCTGGG+CGG - chr7.4:52153004-52153023 MS.gene043683:CDS 60.0%
GCGGGACTTCACGAAGGAGG+AGG - chr7.4:52153347-52153366 MS.gene043683:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 52151237 52154125 52151237 ID=MS.gene043683
chr7.4 mRNA 52151237 52154125 52151237 ID=MS.gene043683.t1;Parent=MS.gene043683
chr7.4 exon 52154079 52154125 52154079 ID=MS.gene043683.t1.exon1;Parent=MS.gene043683.t1
chr7.4 CDS 52154079 52154125 52154079 ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1
chr7.4 exon 52153877 52153965 52153877 ID=MS.gene043683.t1.exon2;Parent=MS.gene043683.t1
chr7.4 CDS 52153877 52153965 52153877 ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1
chr7.4 exon 52153491 52153615 52153491 ID=MS.gene043683.t1.exon3;Parent=MS.gene043683.t1
chr7.4 CDS 52153491 52153615 52153491 ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1
chr7.4 exon 52152890 52153184 52152890 ID=MS.gene043683.t1.exon4;Parent=MS.gene043683.t1
chr7.4 CDS 52152890 52153184 52152890 ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1
chr7.4 exon 52151727 52152259 52151727 ID=MS.gene043683.t1.exon5;Parent=MS.gene043683.t1
chr7.4 CDS 52151727 52152259 52151727 ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1
chr7.4 exon 52151510 52151632 52151510 ID=MS.gene043683.t1.exon6;Parent=MS.gene043683.t1
chr7.4 CDS 52151510 52151632 52151510 ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1
chr7.4 exon 52151237 52151425 52151237 ID=MS.gene043683.t1.exon7;Parent=MS.gene043683.t1
chr7.4 CDS 52151237 52151425 52151237 ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1
Gene Sequence

>MS.gene043683

ATGGCCATCTTCTGCTTTTTAGATATGAAAAAACTTCCAATTTTGAGGTAAATATTTTTGAAAAGAGTGCCTTGGAGACAAAGTACCCTTCCAAAAGAGTTGAAGCTAAAACGGTCTCCAATGATCAAGGAAATAATTCTCTAAATGGTAAAAATTGTAGAGCAGCTCAAAAGAGAAAAGCTAACTCCTCCTTTGAATTTGGAAGTAGTAGTTGTGTTAAAGTTGGGAAATCACAAAAGAAGTCCAAAGGTAAAAAAATATATTTTACGTCTTCATTGTCTCATGAAAGCTCACAAATTAACATAAACTATTAGCTTTTGTTCTCTTCATTTCATATTATCATTTTTTTTCTTTTCTTGAAGTGTCAAGGGAGGAAGTTCATAGTATGCATTAAATCTAGTAGGCATCTCATGTTAAGTATAGTAGGCATTAAATTTTAGCAGGTCTTGATTTTTAGGAACCTGGAAGATGATCATGAAATATGTGTCTGATAATGTTCCAATTTTGCAGAAAAACAAGTGATTACTGCTGCAGAGAAAGTTCCAACTCTTGAAAGAGCAAAATCTTTCAAAATAAGAAATCCATCCTTTGTTGCTGTCATGCGTGCATCATACGTTGAACATAGATTTCTAATGGTAAGTTACAATGACATATTTTGCTCGTAGAACCAATAACCAAATCTTTCTCTAGTTGTTTACTAGCTTAAGGTGTGAGAAATATATATAATGATAATTTAAAAATAATTTAACGTGGTTTTGGCTTTAGACCTTAGAGTGTGCTCCTCTTAAGGTCTCGGATACAATTTACCTCGGTGCAATTTTGGTGGGCTAGTTTGGCTTCTACAAATAAAAATAACGACTATGTATGTACTGACTAAGAATAATTAGAGTATACCACACATTTTTTATGCATTAACATTTGTTTTTTCTTTTGTTTGGCAGAATATACCACGTAATACGTATGGTAATAGACACTTTGATTTGGAGAAGAAAAGAGGAGATATTTATTTTCAGGTGTTAAATGAAGGAGTTTGGCCTACTAGGTTTTCTATCAGGAAGTCCAGTACAGGATTACAGTTTGATATCACAAGTGGATGGAAGGCATTTGCAGAGGACAATAACTTGAAAGTTGGTGATGTTTGCAAATTCGAGCTCATCTCTAGCACTATACTTACCTTCGTTGTTCACATCTTTCGAGAGGCCGACAATGACAACACAAAGTGTTCAGCATCTCAAAGTATGATCAATTGATTTTTAATTTTCATTTCAAATTAATTTTTTTTTTCATTTGACAAATAGATATATTCATCCATCTTGTTCTAACTTCATAGAACGATTGGTGAAGCTTTCATCATGAAGTTTTTGAAATCATTATTGGTGATGCTTAAGAAAAATTGAACAAAAGATTTAGTTCTAACCACATAGAACAAAAGGTTAAAACAAAATGGTTATTGGTGAAGCTTAAGAAAAATCGTGAAACAAAAAAACTATTGGTGAAGCTTTATGAAATGTGAAACAAAATCACACTCGAAAACCATTGATTCTGTTTTTTGGGAACAACCTTGTTGTAAATTCGAACAAATAAACTTAGATTTGTGAAGTAAAGGAAGTAGTAACCAATATCAAAGTAACCTCAAACAACAACAACAAAACATAGCTCTAATCTAGAAACCAAGTGTAAAAGCGGGAAAAAAAAAACACAAGTAAAATATTTTGCACAGGATTTTTCAATATAGATGTGTAAAAATCAATCCATGTGGAGGGGAAAGGTTTGTTACTGGGCCTGGGCGGGTCATAAACAAAGCAAGACCAGCCCAAACCAAAACCAAAAGAAAAGGAATGGAATGGGGTGTCCTCGTTTATATAGGTTTAGGGTTAGGTGGTATATGTGAATTGCTGATTGTGATTCATTCATCCCTTCCGTGTTGTGTTTCAATGTCGACAATGGAATTGCGCGCAACCAAATACTGCAAAGAAAGTGTGAAATCGGAACCGGAACAGGAACCGAAATTGAAACGGCAGAAATCGGTATCATATTTGGGATCGGAAAAGAAACACGATGAAGATTCATATGAGAAGGATAAGCAGGACTTCACGAAGGAGGAGGATAAGCGGGACTTCACGAAGGAGGAGGATATCATCTGGGAGAAGAAGGAGGAGATATTGGAAGAAGAAGAGGAGGAAGAAGAAGAGGAGGAGGATAACTGGGATAAGGGGGATAAATCGCAAGAAGACGATTCTGAGTATAGTGATTATGAGGAATACTGGACCAAGTATGAGAACGACAGTCAACCATTTATGTATAAGCGGCGTTCTGATGGTTCTGTGTTTAAGAACCAGGCTTGGTTGGATCGTGAGGCTAAAATTCGTGAGTATGATGAGCTCTCTCGCGATCTAAGTGTAGGCATCTATCAATTTCAATTTCATTTCATGTTGTTTGTTTCACTTATAAACAATCTCTTAATTTTGATTGATTCTGGACAACACAAAGCAGAATTACGATGCTATCGCCCATCCACCTGGTTGCGATTTAACTGGCGGTATTGTACCCCTCGATTTAGATGAAGATGAGCTCCCTACTCTCAAAAAACTCTGCGAGTTTGCTTTGAATAAGCAGGTTGGTTCAATACTTAATAATATTGTAGTATGTTATGTTTGTTTGTTCATTAACTAAACTAATTCTTCTTACTTATTTAATTAGGCTCCAACTTTTGTGTTTCATAAAGTTGTCAAGTGTACCCATCCTGCTGGTATTTCTTTAACTGCTGGTAGGGAGTATTACATTACTTTTCAAGCAACAGGGAAAGGAAAACCTGATCTAACAACTTTCCAGACTCATGTAGTTCAAGATGGTGATGATGATGTCAAAGAGTTTGTCATTAAAACCTAA

Protein sequence

>MS.gene043683.t1

MAIFCFLDMKKLPILRAAQKRKANSSFEFGSSSCVKVGKSQKKSKEKQVITAAEKVPTLERAKSFKIRNPSFVAVMRASYVEHRFLMNIPRNTYGNRHFDLEKKRGDIYFQVLNEGVWPTRFSIRKSSTGLQFDITSGWKAFAEDNNLKVGDVCKFELISSTILTFVVHIFREADNDNTKCSASQSLGLGGICELLIVIHSSLPCCVSMSTMELRATKYCKESVKSEPEQEPKLKRQKSVSYLGSEKKHDEDSYEKDKQDFTKEEDKRDFTKEEDIIWEKKEEILEEEEEEEEEEEDNWDKGDKSQEDDSEYSDYEEYWTKYENDSQPFMYKRRSDGSVFKNQAWLDREAKIREYDELSRDLSNYDAIAHPPGCDLTGGIVPLDLDEDELPTLKKLCEFALNKQAPTFVFHKVVKCTHPAGISLTAGREYYITFQATGKGKPDLTTFQTHVVQDGDDDVKEFVIKT