Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043683.t1 | RHN45638.1 | 89 | 172 | 17 | 2 | 16 | 187 | 109 | 278 | 3.70E-78 | 302.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043683.t1 | Q2R9D2 | 32.2 | 146 | 79 | 5 | 34 | 172 | 259 | 391 | 5.9e-08 | 60.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043683.t1 | A0A396GYT5 | 89.0 | 172 | 17 | 2 | 16 | 187 | 109 | 278 | 2.7e-78 | 302.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene043683.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043683.t1 | MTR_7g050580 | 88.372 | 172 | 18 | 2 | 16 | 187 | 136 | 305 | 1.63e-94 | 288 |
MS.gene043683.t1 | MTR_4g055800 | 63.281 | 256 | 50 | 5 | 216 | 466 | 77 | 293 | 6.71e-91 | 278 |
MS.gene043683.t1 | MTR_7g050560 | 66.120 | 183 | 44 | 5 | 18 | 185 | 124 | 303 | 8.19e-73 | 233 |
MS.gene043683.t1 | MTR_7g050590 | 65.241 | 187 | 46 | 6 | 16 | 186 | 111 | 294 | 1.99e-72 | 231 |
MS.gene043683.t1 | MTR_3g098790 | 65.922 | 179 | 52 | 2 | 16 | 186 | 136 | 313 | 1.65e-71 | 229 |
MS.gene043683.t1 | MTR_7g050710 | 65.775 | 187 | 47 | 4 | 16 | 186 | 136 | 321 | 5.10e-70 | 226 |
MS.gene043683.t1 | MTR_8g461300 | 52.850 | 193 | 67 | 7 | 294 | 465 | 9 | 198 | 2.05e-47 | 162 |
MS.gene043683.t1 | MTR_7g050720 | 47.253 | 182 | 71 | 7 | 17 | 174 | 137 | 317 | 2.01e-40 | 147 |
MS.gene043683.t1 | MTR_3g080680 | 35.821 | 201 | 107 | 7 | 282 | 465 | 3 | 198 | 5.64e-25 | 102 |
MS.gene043683.t1 | MTR_3g082420 | 40.645 | 155 | 74 | 5 | 322 | 463 | 67 | 216 | 1.79e-24 | 101 |
MS.gene043683.t1 | MTR_3g082340 | 40.645 | 155 | 74 | 5 | 322 | 463 | 68 | 217 | 3.03e-24 | 100 |
MS.gene043683.t1 | MTR_1g108780 | 37.410 | 139 | 66 | 6 | 35 | 172 | 172 | 290 | 8.25e-17 | 82.8 |
MS.gene043683.t1 | MTR_3g083080 | 34.615 | 156 | 78 | 6 | 308 | 451 | 46 | 189 | 1.77e-15 | 75.5 |
MS.gene043683.t1 | MTR_1g035460 | 40.179 | 112 | 55 | 4 | 61 | 172 | 188 | 287 | 5.49e-15 | 77.0 |
MS.gene043683.t1 | MTR_8g103940 | 36.364 | 143 | 71 | 6 | 31 | 172 | 208 | 331 | 4.23e-14 | 74.7 |
MS.gene043683.t1 | MTR_3g083030 | 35.971 | 139 | 66 | 6 | 308 | 436 | 71 | 196 | 2.45e-13 | 69.7 |
MS.gene043683.t1 | MTR_3g083050 | 35.252 | 139 | 67 | 6 | 308 | 436 | 48 | 173 | 6.19e-13 | 68.2 |
MS.gene043683.t1 | MTR_4g068320 | 31.783 | 129 | 81 | 3 | 44 | 172 | 267 | 388 | 6.33e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 103 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACACTTTCTTTGCAGTATT+TGG | 0.131197 | 7.4:+52152144 | None:intergenic |
GCAGAAATCGGTATCATATT+TGG | 0.167599 | 7.4:-52152086 | MS.gene043683:CDS |
GCTAACTCCTCCTTTGAATT+TGG | 0.172588 | 7.4:-52153924 | MS.gene043683:CDS |
TTCAATTTCGGTTCCTGTTC+CGG | 0.192028 | 7.4:+52152112 | None:intergenic |
AAGAAGAGGAGGAGGATAAC+TGG | 0.231959 | 7.4:-52151919 | MS.gene043683:CDS |
GGAGAAGAAGGAGGAGATAT+TGG | 0.249675 | 7.4:-52151960 | MS.gene043683:CDS |
GATTTCTGCCGTTTCAATTT+CGG | 0.268887 | 7.4:+52152100 | None:intergenic |
GAGGAGGATAACTGGGATAA+GGG | 0.302652 | 7.4:-52151911 | MS.gene043683:CDS |
GAACGCCGCTTATACATAAA+TGG | 0.335076 | 7.4:+52151812 | None:intergenic |
TCCTCGTTTATATAGGTTTA+GGG | 0.341981 | 7.4:-52152252 | MS.gene043683:intron |
AGGAGGATAACTGGGATAAG+GGG | 0.361769 | 7.4:-52151910 | MS.gene043683:CDS |
AGTAGTAGTTGTGTTAAAGT+TGG | 0.371498 | 7.4:-52153900 | MS.gene043683:CDS |
CCACCTGGTTGCGATTTAAC+TGG | 0.372678 | 7.4:-52151589 | MS.gene043683:CDS |
CGTTGAACATAGATTTCTAA+TGG | 0.376360 | 7.4:-52153490 | MS.gene043683:intron |
TTGACTGTCGTTCTCATACT+TGG | 0.379474 | 7.4:+52151835 | None:intergenic |
CAGAAATCGGTATCATATTT+GGG | 0.381715 | 7.4:-52152085 | MS.gene043683:CDS |
ATGAAGGAGTTTGGCCTACT+AGG | 0.386073 | 7.4:-52153083 | MS.gene043683:CDS |
AGGTGTTAAATGAAGGAGTT+TGG | 0.387476 | 7.4:-52153092 | MS.gene043683:CDS |
GAAATTGAAACGGCAGAAAT+CGG | 0.396637 | 7.4:-52152098 | MS.gene043683:CDS |
TGGTAATAGACACTTTGATT+TGG | 0.405062 | 7.4:-52153142 | MS.gene043683:CDS |
GGAGGAGGATAACTGGGATA+AGG | 0.405675 | 7.4:-52151912 | MS.gene043683:CDS |
TGTGAAATCGGAACCGGAAC+AGG | 0.406008 | 7.4:-52152125 | MS.gene043683:CDS |
GTCTGGAAAGTTGTTAGATC+AGG | 0.411819 | 7.4:+52151292 | None:intergenic |
CTGCAAAGAAAGTGTGAAAT+CGG | 0.414840 | 7.4:-52152137 | MS.gene043683:CDS |
ACACTTTGTGTTGTCATTGT+CGG | 0.416261 | 7.4:+52152903 | None:intergenic |
ACTTTATGAAACACAAAAGT+TGG | 0.418561 | 7.4:+52151400 | None:intergenic |
GCTGGTATTTCTTTAACTGC+TGG | 0.423873 | 7.4:-52151358 | MS.gene043683:CDS |
GTTTATATAGGTTTAGGGTT+AGG | 0.425334 | 7.4:-52152247 | MS.gene043683:intron |
ATAGTGATTATGAGGAATAC+TGG | 0.428542 | 7.4:-52151859 | MS.gene043683:CDS |
GTAGTAGTTGTGTTAAAGTT+GGG | 0.429796 | 7.4:-52153899 | MS.gene043683:CDS |
GGAGGAAGAAGAAGAGGAGG+AGG | 0.437915 | 7.4:-52151927 | MS.gene043683:CDS |
CTGTGTTTAAGAACCAGGCT+TGG | 0.448983 | 7.4:-52151781 | MS.gene043683:CDS |
CATCTTGAACTACATGAGTC+TGG | 0.449948 | 7.4:+52151275 | None:intergenic |
CGAGTTTGCTTTGAATAAGC+AGG | 0.455151 | 7.4:-52151509 | MS.gene043683:intron |
AGAAGAGGAGGAGGATAACT+GGG | 0.459973 | 7.4:-52151918 | MS.gene043683:CDS |
CGAAGGAGGAGGATATCATC+TGG | 0.460292 | 7.4:-52151982 | MS.gene043683:CDS |
GTATTTCTTTAACTGCTGGT+AGG | 0.460852 | 7.4:-52151354 | MS.gene043683:CDS |
AGAAGAGGAGGAAGAAGAAG+AGG | 0.467774 | 7.4:-52151933 | MS.gene043683:CDS |
TATTTCTTTAACTGCTGGTA+GGG | 0.470429 | 7.4:-52151353 | MS.gene043683:CDS |
GGAGGATAACTGGGATAAGG+GGG | 0.474419 | 7.4:-52151909 | MS.gene043683:CDS |
GGAGATATTGGAAGAAGAAG+AGG | 0.477884 | 7.4:-52151948 | MS.gene043683:CDS |
AGAGGAGGAAGAAGAAGAGG+AGG | 0.486639 | 7.4:-52151930 | MS.gene043683:CDS |
TTTGATTTGGAGAAGAAAAG+AGG | 0.488349 | 7.4:-52153129 | MS.gene043683:CDS |
GGATATCATCTGGGAGAAGA+AGG | 0.489838 | 7.4:-52151972 | MS.gene043683:CDS |
ATCAAACTGTAATCCTGTAC+TGG | 0.494341 | 7.4:+52153044 | None:intergenic |
TTCATATGAGAAGGATAAGC+AGG | 0.503919 | 7.4:-52152038 | MS.gene043683:CDS |
CCTCACGATCCAACCAAGCC+TGG | 0.508758 | 7.4:+52151768 | None:intergenic |
GTTTAAGAACCAGGCTTGGT+TGG | 0.512575 | 7.4:-52151777 | MS.gene043683:CDS |
CAGACTCATGTAGTTCAAGA+TGG | 0.513524 | 7.4:-52151274 | MS.gene043683:CDS |
CGCATGACAGCAACAAAGGA+TGG | 0.517132 | 7.4:+52153522 | None:intergenic |
AGAAAGTGTGAAATCGGAAC+CGG | 0.517778 | 7.4:-52152131 | MS.gene043683:CDS |
TTCTGAGTATAGTGATTATG+AGG | 0.519008 | 7.4:-52151867 | MS.gene043683:CDS |
TCTATCAGGAAGTCCAGTAC+AGG | 0.523027 | 7.4:-52153057 | MS.gene043683:CDS |
GAGGACAATAACTTGAAAGT+TGG | 0.523457 | 7.4:-52152994 | MS.gene043683:CDS |
TGGTTCTGTGTTTAAGAACC+AGG | 0.524512 | 7.4:-52151786 | MS.gene043683:CDS |
ATGTATAAGCGGCGTTCTGA+TGG | 0.531157 | 7.4:-52151806 | MS.gene043683:CDS |
TAAAGAAATACCAGCAGGAT+GGG | 0.537748 | 7.4:+52151366 | None:intergenic |
GATATTGGAAGAAGAAGAGG+AGG | 0.537799 | 7.4:-52151945 | MS.gene043683:CDS |
AACAGGAACCGAAATTGAAA+CGG | 0.540564 | 7.4:-52152108 | MS.gene043683:CDS |
GTCAAGTGTACCCATCCTGC+TGG | 0.541207 | 7.4:-52151376 | MS.gene043683:CDS |
ATCGGTATCATATTTGGGAT+CGG | 0.544496 | 7.4:-52152080 | MS.gene043683:CDS |
TATATAGGTTTAGGGTTAGG+TGG | 0.547778 | 7.4:-52152244 | MS.gene043683:intron |
TTAAATCGCAACCAGGTGGA+TGG | 0.551434 | 7.4:+52151593 | None:intergenic |
ACTACTACTTCCAAATTCAA+AGG | 0.555763 | 7.4:+52153914 | None:intergenic |
TGATATCACAAGTGGATGGA+AGG | 0.558355 | 7.4:-52153025 | MS.gene043683:CDS |
CACGAAGGAGGAGGATAAGC+GGG | 0.558411 | 7.4:-52152011 | MS.gene043683:CDS |
CTCATCTTCATCTAAATCGA+GGG | 0.563365 | 7.4:+52151555 | None:intergenic |
TAAATCGCAACCAGGTGGAT+GGG | 0.565179 | 7.4:+52151594 | None:intergenic |
GATGCTATCGCCCATCCACC+TGG | 0.569398 | 7.4:-52151604 | MS.gene043683:CDS |
CGATGAAGATTCATATGAGA+AGG | 0.570440 | 7.4:-52152047 | MS.gene043683:CDS |
TTACAGTTTGATATCACAAG+TGG | 0.574741 | 7.4:-52153033 | MS.gene043683:CDS |
CCAGGCTTGGTTGGATCGTG+AGG | 0.575302 | 7.4:-52151768 | MS.gene043683:CDS |
GTCAACCATTTATGTATAAG+CGG | 0.575552 | 7.4:-52151817 | MS.gene043683:CDS |
CGTTGTTCACATCTTTCGAG+AGG | 0.576702 | 7.4:-52152926 | MS.gene043683:CDS |
GCGGGACTTCACGAAGGAGG+AGG | 0.581793 | 7.4:-52151993 | MS.gene043683:CDS |
GCAGGACTTCACGAAGGAGG+AGG | 0.581793 | 7.4:-52152020 | MS.gene043683:CDS |
AATATACCACGTAATACGTA+TGG | 0.585811 | 7.4:-52153162 | MS.gene043683:CDS |
AGTTTGATATCACAAGTGGA+TGG | 0.587991 | 7.4:-52153029 | MS.gene043683:CDS |
TTCCTGATAGAAAACCTAGT+AGG | 0.591449 | 7.4:+52153069 | None:intergenic |
ACATTGAAACACAACACGGA+AGG | 0.598710 | 7.4:+52152188 | None:intergenic |
GCAGTTAAAGAAATACCAGC+AGG | 0.600140 | 7.4:+52151361 | None:intergenic |
CCTGGTTGCGATTTAACTGG+CGG | 0.603828 | 7.4:-52151586 | MS.gene043683:CDS |
CATTGAAACACAACACGGAA+GGG | 0.611171 | 7.4:+52152189 | None:intergenic |
TTGTGTTTCAATGTCGACAA+TGG | 0.611717 | 7.4:-52152179 | MS.gene043683:CDS |
TCACGAAGGAGGAGGATAAG+CGG | 0.611757 | 7.4:-52152012 | MS.gene043683:CDS |
GAAGGAGGAGGATATCATCT+GGG | 0.612094 | 7.4:-52151981 | MS.gene043683:CDS |
CCGCCAGTTAAATCGCAACC+AGG | 0.615393 | 7.4:+52151586 | None:intergenic |
TTAAAGAAATACCAGCAGGA+TGG | 0.630544 | 7.4:+52151365 | None:intergenic |
AAATCACAAAAGAAGTCCAA+AGG | 0.633010 | 7.4:-52153876 | MS.gene043683:intron |
CTATTACCATACGTATTACG+TGG | 0.633917 | 7.4:+52153156 | None:intergenic |
TGCACGCATGACAGCAACAA+AGG | 0.634058 | 7.4:+52153518 | None:intergenic |
GCTCATCTTCATCTAAATCG+AGG | 0.638236 | 7.4:+52151554 | None:intergenic |
TATCATCTGGGAGAAGAAGG+AGG | 0.641903 | 7.4:-52151969 | MS.gene043683:CDS |
ACTACTTCCAAATTCAAAGG+AGG | 0.654882 | 7.4:+52153917 | None:intergenic |
TAAGCAGGACTTCACGAAGG+AGG | 0.657823 | 7.4:-52152023 | MS.gene043683:CDS |
TAAGCGGGACTTCACGAAGG+AGG | 0.661925 | 7.4:-52151996 | MS.gene043683:CDS |
TCATCTTCATCTAAATCGAG+GGG | 0.668232 | 7.4:+52151556 | None:intergenic |
TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7.4:-52153013 | MS.gene043683:CDS |
TCGAAAGATGTGAACAACGA+AGG | 0.676161 | 7.4:+52152930 | None:intergenic |
CCAGTTAAATCGCAACCAGG+TGG | 0.680990 | 7.4:+52151589 | None:intergenic |
GGATAAGCGGGACTTCACGA+AGG | 0.690741 | 7.4:-52151999 | MS.gene043683:CDS |
GGATAAGCAGGACTTCACGA+AGG | 0.708669 | 7.4:-52152026 | MS.gene043683:CDS |
GTCGACATTGAAACACAACA+CGG | 0.778812 | 7.4:+52152184 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTAAAAATAATTTAACG+TGG | - | chr7.4:52151967-52151986 | MS.gene043683:CDS | 10.0% |
!!! | AAAATATATTTTTTTACCTT+TGG | + | chr7.4:52151483-52151502 | None:intergenic | 10.0% |
!! | AAAAATATTTACCTCAAAAT+TGG | + | chr7.4:52151276-52151295 | None:intergenic | 15.0% |
!! | TTCTTCTTACTTATTTAATT+AGG | - | chr7.4:52153915-52153934 | MS.gene043683:CDS | 15.0% |
!! | AACAAAAGGTTAAAACAAAA+TGG | - | chr7.4:52152661-52152680 | MS.gene043683:intron | 20.0% |
!!! | AAAATAATTTAACGTGGTTT+TGG | - | chr7.4:52151973-52151992 | MS.gene043683:CDS | 20.0% |
!!! | CATTTGTTTTTTCTTTTGTT+TGG | - | chr7.4:52152152-52152171 | MS.gene043683:CDS | 20.0% |
!!! | GAAGTTTTTGAAATCATTAT+TGG | - | chr7.4:52152591-52152610 | MS.gene043683:intron | 20.0% |
! | AACTTAGATTTGTGAAGTAA+AGG | - | chr7.4:52152820-52152839 | MS.gene043683:intron | 25.0% |
! | ACTTTATGAAACACAAAAGT+TGG | + | chr7.4:52153943-52153962 | None:intergenic | 25.0% |
! | AGAATTATTTCCTTGATCAT+TGG | + | chr7.4:52151357-52151376 | None:intergenic | 25.0% |
! | ATTTGTTCGAATTTACAACA+AGG | + | chr7.4:52152799-52152818 | None:intergenic | 25.0% |
! | CAAGGAAATAATTCTCTAAA+TGG | - | chr7.4:52151362-52151381 | MS.gene043683:CDS | 25.0% |
! | GGTTAAAACAAAATGGTTAT+TGG | - | chr7.4:52152668-52152687 | MS.gene043683:intron | 25.0% |
! | GTTAATGCATAAAAAATGTG+TGG | + | chr7.4:52152133-52152152 | None:intergenic | 25.0% |
! | TAAACAACTAGAGAAAGATT+TGG | + | chr7.4:52151914-52151933 | None:intergenic | 25.0% |
! | TAGTATGCATTAAATCTAGT+AGG | - | chr7.4:52151618-52151637 | MS.gene043683:intron | 25.0% |
! | TCGTGAAACAAAAAAACTAT+TGG | - | chr7.4:52152707-52152726 | MS.gene043683:intron | 25.0% |
!! | ACAAGTAAAATATTTTGCAC+AGG | - | chr7.4:52152935-52152954 | MS.gene043683:CDS | 25.0% |
!! | TGAAAAAACTTCCAATTTTG+AGG | - | chr7.4:52151262-52151281 | MS.gene043683:CDS | 25.0% |
!! | TTTTAACCTTTTGTTCTATG+TGG | + | chr7.4:52152656-52152675 | None:intergenic | 25.0% |
!!! | AAACCATTGATTCTGTTTTT+TGG | - | chr7.4:52152767-52152786 | MS.gene043683:intron | 25.0% |
!!! | AACCATTGATTCTGTTTTTT+GGG | - | chr7.4:52152768-52152787 | MS.gene043683:intron | 25.0% |
!!! | AAGAGGAGATATTTATTTTC+AGG | - | chr7.4:52152228-52152247 | MS.gene043683:CDS | 25.0% |
!!! | CTCTTAATTTTGATTGATTC+TGG | - | chr7.4:52153693-52153712 | MS.gene043683:intron | 25.0% |
!!! | TATTTTCAGGTGTTAAATGA+AGG | - | chr7.4:52152241-52152260 | MS.gene043683:intron | 25.0% |
!!! | TTTTCTTTTGGTTTTGGTTT+GGG | + | chr7.4:52153052-52153071 | None:intergenic | 25.0% |
AAAAGAAAAGGAATGGAATG+GGG | - | chr7.4:52153063-52153082 | MS.gene043683:CDS | 30.0% | |
AAATCACAAAAGAAGTCCAA+AGG | - | chr7.4:52151464-52151483 | MS.gene043683:intron | 30.0% | |
AATATACCACGTAATACGTA+TGG | - | chr7.4:52152178-52152197 | MS.gene043683:CDS | 30.0% | |
ACTACTACTTCCAAATTCAA+AGG | + | chr7.4:52151429-52151448 | None:intergenic | 30.0% | |
AGTAGTAGTTGTGTTAAAGT+TGG | - | chr7.4:52151440-52151459 | MS.gene043683:intron | 30.0% | |
ATAGTGATTATGAGGAATAC+TGG | - | chr7.4:52153481-52153500 | MS.gene043683:intron | 30.0% | |
ATATTTCATGATCATCTTCC+AGG | + | chr7.4:52151700-52151719 | None:intergenic | 30.0% | |
CAAAACCAAAAGAAAAGGAA+TGG | - | chr7.4:52153056-52153075 | MS.gene043683:CDS | 30.0% | |
CAAAAGAAAAGGAATGGAAT+GGG | - | chr7.4:52153062-52153081 | MS.gene043683:CDS | 30.0% | |
CAAAAGAGTTGAAGCTAAAA+CGG | - | chr7.4:52151328-52151347 | MS.gene043683:CDS | 30.0% | |
CAAACCAAAACCAAAAGAAA+AGG | - | chr7.4:52153051-52153070 | MS.gene043683:CDS | 30.0% | |
CAGAAATCGGTATCATATTT+GGG | - | chr7.4:52153255-52153274 | MS.gene043683:intron | 30.0% | |
CATATCTAAAAAGCAGAAGA+TGG | + | chr7.4:52151244-52151263 | None:intergenic | 30.0% | |
CATCTCATGTTAAGTATAGT+AGG | - | chr7.4:52151641-52151660 | MS.gene043683:intron | 30.0% | |
CGTTGAACATAGATTTCTAA+TGG | - | chr7.4:52151850-52151869 | MS.gene043683:CDS | 30.0% | |
GTAGTAGTTGTGTTAAAGTT+GGG | - | chr7.4:52151441-52151460 | MS.gene043683:intron | 30.0% | |
GTCAACCATTTATGTATAAG+CGG | - | chr7.4:52153523-52153542 | MS.gene043683:CDS | 30.0% | |
TAAAAATCAATCCATGTGGA+GGG | - | chr7.4:52152977-52152996 | MS.gene043683:CDS | 30.0% | |
TATTTCTTTAACTGCTGGTA+GGG | - | chr7.4:52153987-52154006 | MS.gene043683:intron | 30.0% | |
TCCTCGTTTATATAGGTTTA+GGG | - | chr7.4:52153088-52153107 | MS.gene043683:CDS | 30.0% | |
TCTATGAAGTTAGAACAAGA+TGG | + | chr7.4:52152548-52152567 | None:intergenic | 30.0% | |
TGGTAATAGACACTTTGATT+TGG | - | chr7.4:52152198-52152217 | MS.gene043683:CDS | 30.0% | |
TGTGTAAAAATCAATCCATG+TGG | - | chr7.4:52152973-52152992 | MS.gene043683:CDS | 30.0% | |
TTACAGTTTGATATCACAAG+TGG | - | chr7.4:52152307-52152326 | MS.gene043683:intron | 30.0% | |
TTCCCAAAAAACAGAATCAA+TGG | + | chr7.4:52152773-52152792 | None:intergenic | 30.0% | |
TTCTAACCACATAGAACAAA+AGG | - | chr7.4:52152647-52152666 | MS.gene043683:intron | 30.0% | |
TTCTAACTTCATAGAACGAT+TGG | - | chr7.4:52152553-52152572 | MS.gene043683:intron | 30.0% | |
TTCTGAGTATAGTGATTATG+AGG | - | chr7.4:52153473-52153492 | MS.gene043683:intron | 30.0% | |
! | CTAGAGAAAGATTTGGTTAT+TGG | + | chr7.4:52151907-52151926 | None:intergenic | 30.0% |
! | GTTTATATAGGTTTAGGGTT+AGG | - | chr7.4:52153093-52153112 | MS.gene043683:CDS | 30.0% |
! | GTTTGAGGTTACTTTGATAT+TGG | + | chr7.4:52152855-52152874 | None:intergenic | 30.0% |
! | TCTAGTTGTTTACTAGCTTA+AGG | - | chr7.4:52151922-52151941 | MS.gene043683:CDS | 30.0% |
! | TTTAGCAGGTCTTGATTTTT+AGG | - | chr7.4:52151672-52151691 | MS.gene043683:intron | 30.0% |
!! | ACATTACTTTTCAAGCAACA+GGG | - | chr7.4:52154016-52154035 | MS.gene043683:intron | 30.0% |
!! | AGTAGGCATTAAATTTTAGC+AGG | - | chr7.4:52151658-52151677 | MS.gene043683:intron | 30.0% |
!! | CACTTGTTTTTCTGCAAAAT+TGG | + | chr7.4:52151738-52151757 | None:intergenic | 30.0% |
!! | TACATTACTTTTCAAGCAAC+AGG | - | chr7.4:52154015-52154034 | MS.gene043683:intron | 30.0% |
!! | TTCTTTTCTTGAAGTGTCAA+GGG | - | chr7.4:52151585-52151604 | MS.gene043683:CDS | 30.0% |
!! | TTTCTTTTCTTGAAGTGTCA+AGG | - | chr7.4:52151584-52151603 | MS.gene043683:CDS | 30.0% |
!! | TTTGATTTGGAGAAGAAAAG+AGG | - | chr7.4:52152211-52152230 | MS.gene043683:CDS | 30.0% |
!!! | CATTCCTTTTCTTTTGGTTT+TGG | + | chr7.4:52153058-52153077 | None:intergenic | 30.0% |
!!! | CTTTTCTTTTGGTTTTGGTT+TGG | + | chr7.4:52153053-52153072 | None:intergenic | 30.0% |
!!! | TATTTTTGAAAAGAGTGCCT+TGG | - | chr7.4:52151289-52151308 | MS.gene043683:CDS | 30.0% |
!!! | TGTTTTGTTGTTGTTGTTTG+AGG | + | chr7.4:52152870-52152889 | None:intergenic | 30.0% |
AAAAATCAATCCATGTGGAG+GGG | - | chr7.4:52152978-52152997 | MS.gene043683:CDS | 35.0% | |
AACAGGAACCGAAATTGAAA+CGG | - | chr7.4:52153232-52153251 | MS.gene043683:intron | 35.0% | |
ACACTTTGTGTTGTCATTGT+CGG | + | chr7.4:52152440-52152459 | None:intergenic | 35.0% | |
ACCCTAAACCTATATAAACG+AGG | + | chr7.4:52153092-52153111 | None:intergenic | 35.0% | |
ACTACTTCCAAATTCAAAGG+AGG | + | chr7.4:52151426-52151445 | None:intergenic | 35.0% | |
AGGTGTTAAATGAAGGAGTT+TGG | - | chr7.4:52152248-52152267 | MS.gene043683:intron | 35.0% | |
AGTTTGATATCACAAGTGGA+TGG | - | chr7.4:52152311-52152330 | MS.gene043683:intron | 35.0% | |
ATCAAACTGTAATCCTGTAC+TGG | + | chr7.4:52152299-52152318 | None:intergenic | 35.0% | |
CACACTTTCTTTGCAGTATT+TGG | + | chr7.4:52153199-52153218 | None:intergenic | 35.0% | |
CCAAAAGAAAAGGAATGGAA+TGG | - | chr7.4:52153061-52153080 | MS.gene043683:CDS | 35.0% | |
CGATGAAGATTCATATGAGA+AGG | - | chr7.4:52153293-52153312 | MS.gene043683:intron | 35.0% | |
CTAGAAACCAAGTGTAAAAG+CGG | - | chr7.4:52152900-52152919 | MS.gene043683:CDS | 35.0% | |
CTATTACCATACGTATTACG+TGG | + | chr7.4:52152187-52152206 | None:intergenic | 35.0% | |
CTCATCTTCATCTAAATCGA+GGG | + | chr7.4:52153788-52153807 | None:intergenic | 35.0% | |
GAAATTGAAACGGCAGAAAT+CGG | - | chr7.4:52153242-52153261 | MS.gene043683:intron | 35.0% | |
GAGGACAATAACTTGAAAGT+TGG | - | chr7.4:52152346-52152365 | MS.gene043683:intron | 35.0% | |
GCAGAAATCGGTATCATATT+TGG | - | chr7.4:52153254-52153273 | MS.gene043683:intron | 35.0% | |
GTAAAAATCAATCCATGTGG+AGG | - | chr7.4:52152976-52152995 | MS.gene043683:CDS | 35.0% | |
GTATTTCTTTAACTGCTGGT+AGG | - | chr7.4:52153986-52154005 | MS.gene043683:intron | 35.0% | |
GTCCTCGTTTATATAGGTTT+AGG | - | chr7.4:52153087-52153106 | MS.gene043683:CDS | 35.0% | |
TAAAGAAATACCAGCAGGAT+GGG | + | chr7.4:52153977-52153996 | None:intergenic | 35.0% | |
TAGAAACCAAGTGTAAAAGC+GGG | - | chr7.4:52152901-52152920 | MS.gene043683:CDS | 35.0% | |
TCATCTTCATCTAAATCGAG+GGG | + | chr7.4:52153787-52153806 | None:intergenic | 35.0% | |
TTAAAGAAATACCAGCAGGA+TGG | + | chr7.4:52153978-52153997 | None:intergenic | 35.0% | |
TTCATATGAGAAGGATAAGC+AGG | - | chr7.4:52153302-52153321 | MS.gene043683:intron | 35.0% | |
TTCCTGATAGAAAACCTAGT+AGG | + | chr7.4:52152274-52152293 | None:intergenic | 35.0% | |
TTGTGTTTCAATGTCGACAA+TGG | - | chr7.4:52153161-52153180 | MS.gene043683:CDS | 35.0% | |
! | ATCGGTATCATATTTGGGAT+CGG | - | chr7.4:52153260-52153279 | MS.gene043683:intron | 35.0% |
! | CCATTCCATTCCTTTTCTTT+TGG | + | chr7.4:52153064-52153083 | None:intergenic | 35.0% |
! | CTGCAAAGAAAGTGTGAAAT+CGG | - | chr7.4:52153203-52153222 | MS.gene043683:intron | 35.0% |
! | GATTTCTGCCGTTTCAATTT+CGG | + | chr7.4:52153243-52153262 | None:intergenic | 35.0% |
! | GATTTTGCTCTTTCAAGAGT+TGG | + | chr7.4:52151782-52151801 | None:intergenic | 35.0% |
! | TATATAGGTTTAGGGTTAGG+TGG | - | chr7.4:52153096-52153115 | MS.gene043683:CDS | 35.0% |
! | TTAGCTTCAACTCTTTTGGA+AGG | + | chr7.4:52151326-52151345 | None:intergenic | 35.0% |
! | TTTGCTTTGAATAAGCAGGT+TGG | - | chr7.4:52153835-52153854 | MS.gene043683:intron | 35.0% |
!! | AATTTACCTCGGTGCAATTT+TGG | - | chr7.4:52152037-52152056 | MS.gene043683:CDS | 35.0% |
!! | TAGCTTCAACTCTTTTGGAA+GGG | + | chr7.4:52151325-52151344 | None:intergenic | 35.0% |
!!! | CGTTTTAGCTTCAACTCTTT+TGG | + | chr7.4:52151330-52151349 | None:intergenic | 35.0% |
!!! | TTTTTTCCCGCTTTTACACT+TGG | + | chr7.4:52152910-52152929 | None:intergenic | 35.0% |
AAAACGGTCTCCAATGATCA+AGG | - | chr7.4:52151344-52151363 | MS.gene043683:CDS | 40.0% | |
ACATTGAAACACAACACGGA+AGG | + | chr7.4:52153155-52153174 | None:intergenic | 40.0% | |
ATTGTATCCGAGACCTTAAG+AGG | + | chr7.4:52152020-52152039 | None:intergenic | 40.0% | |
CAGACTCATGTAGTTCAAGA+TGG | - | chr7.4:52154066-52154085 | MS.gene043683:intron | 40.0% | |
CATCTTGAACTACATGAGTC+TGG | + | chr7.4:52154068-52154087 | None:intergenic | 40.0% | |
CATTGAAACACAACACGGAA+GGG | + | chr7.4:52153154-52153173 | None:intergenic | 40.0% | |
GAACGCCGCTTATACATAAA+TGG | + | chr7.4:52153531-52153550 | None:intergenic | 40.0% | |
GATATTGGAAGAAGAAGAGG+AGG | - | chr7.4:52153395-52153414 | MS.gene043683:intron | 40.0% | |
GCAGTTAAAGAAATACCAGC+AGG | + | chr7.4:52153982-52154001 | None:intergenic | 40.0% | |
GCTAACTCCTCCTTTGAATT+TGG | - | chr7.4:52151416-52151435 | MS.gene043683:intron | 40.0% | |
GCTCATCTTCATCTAAATCG+AGG | + | chr7.4:52153789-52153808 | None:intergenic | 40.0% | |
GCTGGTATTTCTTTAACTGC+TGG | - | chr7.4:52153982-52154001 | MS.gene043683:intron | 40.0% | |
GGAGATATTGGAAGAAGAAG+AGG | - | chr7.4:52153392-52153411 | MS.gene043683:intron | 40.0% | |
GTCGACATTGAAACACAACA+CGG | + | chr7.4:52153159-52153178 | None:intergenic | 40.0% | |
GTCTCGGATACAATTTACCT+CGG | - | chr7.4:52152026-52152045 | MS.gene043683:CDS | 40.0% | |
GTCTGGAAAGTTGTTAGATC+AGG | + | chr7.4:52154051-52154070 | None:intergenic | 40.0% | |
TCGAAAGATGTGAACAACGA+AGG | + | chr7.4:52152413-52152432 | None:intergenic | 40.0% | |
TGATATCACAAGTGGATGGA+AGG | - | chr7.4:52152315-52152334 | MS.gene043683:intron | 40.0% | |
TTCAATTTCGGTTCCTGTTC+CGG | + | chr7.4:52153231-52153250 | None:intergenic | 40.0% | |
TTGACTGTCGTTCTCATACT+TGG | + | chr7.4:52153508-52153527 | None:intergenic | 40.0% | |
! | AGAAAGTGTGAAATCGGAAC+CGG | - | chr7.4:52153209-52153228 | MS.gene043683:intron | 40.0% |
! | CGAGTTTGCTTTGAATAAGC+AGG | - | chr7.4:52153831-52153850 | MS.gene043683:intron | 40.0% |
! | TGGTTCTGTGTTTAAGAACC+AGG | - | chr7.4:52153554-52153573 | MS.gene043683:CDS | 40.0% |
!! | ACTTTTCAAGCAACAGGGAA+AGG | - | chr7.4:52154021-52154040 | MS.gene043683:intron | 40.0% |
!! | GGTCTTGATTTTTAGGAACC+TGG | - | chr7.4:52151679-52151698 | MS.gene043683:intron | 40.0% |
!! | TTTTCTTGAAGTGTCAAGGG+AGG | - | chr7.4:52151588-52151607 | MS.gene043683:CDS | 40.0% |
!!! | CGCAGAGTTTTTTGAGAGTA+GGG | + | chr7.4:52153813-52153832 | None:intergenic | 40.0% |
!!! | TCGCAGAGTTTTTTGAGAGT+AGG | + | chr7.4:52153814-52153833 | None:intergenic | 40.0% |
AAGAAGAGGAGGAGGATAAC+TGG | - | chr7.4:52153421-52153440 | MS.gene043683:intron | 45.0% | |
AGAAGAGGAGGAAGAAGAAG+AGG | - | chr7.4:52153407-52153426 | MS.gene043683:intron | 45.0% | |
AGAAGAGGAGGAGGATAACT+GGG | - | chr7.4:52153422-52153441 | MS.gene043683:intron | 45.0% | |
AGGAGGATAACTGGGATAAG+GGG | - | chr7.4:52153430-52153449 | MS.gene043683:intron | 45.0% | |
ATGAAGGAGTTTGGCCTACT+AGG | - | chr7.4:52152257-52152276 | MS.gene043683:intron | 45.0% | |
ATGTATAAGCGGCGTTCTGA+TGG | - | chr7.4:52153534-52153553 | MS.gene043683:CDS | 45.0% | |
CGTTGTTCACATCTTTCGAG+AGG | - | chr7.4:52152414-52152433 | MS.gene043683:intron | 45.0% | |
CTGTGTTTAAGAACCAGGCT+TGG | - | chr7.4:52153559-52153578 | MS.gene043683:CDS | 45.0% | |
CTTAGAGTGTGCTCCTCTTA+AGG | - | chr7.4:52152004-52152023 | MS.gene043683:CDS | 45.0% | |
GAAGGAGGAGGATATCATCT+GGG | - | chr7.4:52153359-52153378 | MS.gene043683:intron | 45.0% | |
GAGGAGGATAACTGGGATAA+GGG | - | chr7.4:52153429-52153448 | MS.gene043683:intron | 45.0% | |
GGAGAAGAAGGAGGAGATAT+TGG | - | chr7.4:52153380-52153399 | MS.gene043683:intron | 45.0% | |
GGATATCATCTGGGAGAAGA+AGG | - | chr7.4:52153368-52153387 | MS.gene043683:intron | 45.0% | |
TAAATCGCAACCAGGTGGAT+GGG | + | chr7.4:52153749-52153768 | None:intergenic | 45.0% | |
TATCATCTGGGAGAAGAAGG+AGG | - | chr7.4:52153371-52153390 | MS.gene043683:intron | 45.0% | |
TCTATCAGGAAGTCCAGTAC+AGG | - | chr7.4:52152283-52152302 | MS.gene043683:intron | 45.0% | |
TTAAATCGCAACCAGGTGGA+TGG | + | chr7.4:52153750-52153769 | None:intergenic | 45.0% | |
! | CTTAAGAGGAGCACACTCTA+AGG | + | chr7.4:52152006-52152025 | None:intergenic | 45.0% |
! | GGCCTACTAGGTTTTCTATC+AGG | - | chr7.4:52152269-52152288 | MS.gene043683:intron | 45.0% |
! | GTTTAAGAACCAGGCTTGGT+TGG | - | chr7.4:52153563-52153582 | MS.gene043683:CDS | 45.0% |
! | TGGGGTGTCCTCGTTTATAT+AGG | - | chr7.4:52153081-52153100 | MS.gene043683:CDS | 45.0% |
!! | AAAGGTTTGTTACTGGGCCT+GGG | - | chr7.4:52153001-52153020 | MS.gene043683:CDS | 45.0% |
!! | GAGGGGAAAGGTTTGTTACT+GGG | - | chr7.4:52152995-52153014 | MS.gene043683:CDS | 45.0% |
!! | TACCTCGGTGCAATTTTGGT+GGG | - | chr7.4:52152041-52152060 | MS.gene043683:CDS | 45.0% |
!! | TTACCTCGGTGCAATTTTGG+TGG | - | chr7.4:52152040-52152059 | MS.gene043683:CDS | 45.0% |
!!! | CTTTTGGTTTTGGTTTGGGC+TGG | + | chr7.4:52153048-52153067 | None:intergenic | 45.0% |
!!! | GCAATTTTGGTGGGCTAGTT+TGG | - | chr7.4:52152050-52152069 | MS.gene043683:CDS | 45.0% |
ACAAACCTTTCCCCTCCACA+TGG | + | chr7.4:52152991-52153010 | None:intergenic | 50.0% | |
AGAGGAGGAAGAAGAAGAGG+AGG | - | chr7.4:52153410-52153429 | MS.gene043683:intron | 50.0% | |
CCACCTGGTTGCGATTTAAC+TGG | - | chr7.4:52153751-52153770 | MS.gene043683:intron | 50.0% | |
CCAGTTAAATCGCAACCAGG+TGG | + | chr7.4:52153754-52153773 | None:intergenic | 50.0% | |
CCTGGTTGCGATTTAACTGG+CGG | - | chr7.4:52153754-52153773 | MS.gene043683:intron | 50.0% | |
CGAAGGAGGAGGATATCATC+TGG | - | chr7.4:52153358-52153377 | MS.gene043683:intron | 50.0% | |
CGCATGACAGCAACAAAGGA+TGG | + | chr7.4:52151821-52151840 | None:intergenic | 50.0% | |
CTCTCTCGCGATCTAAGTGT+AGG | - | chr7.4:52153618-52153637 | MS.gene043683:intron | 50.0% | |
GGAGGAGGATAACTGGGATA+AGG | - | chr7.4:52153428-52153447 | MS.gene043683:intron | 50.0% | |
GGAGGATAACTGGGATAAGG+GGG | - | chr7.4:52153431-52153450 | MS.gene043683:intron | 50.0% | |
GGATAAGCAGGACTTCACGA+AGG | - | chr7.4:52153314-52153333 | MS.gene043683:intron | 50.0% | |
GTGTGCTCCTCTTAAGGTCT+CGG | - | chr7.4:52152010-52152029 | MS.gene043683:CDS | 50.0% | |
TAAGCAGGACTTCACGAAGG+AGG | - | chr7.4:52153317-52153336 | MS.gene043683:intron | 50.0% | |
TCAATCCATGTGGAGGGGAA+AGG | - | chr7.4:52152983-52153002 | MS.gene043683:CDS | 50.0% | |
TCACGAAGGAGGAGGATAAG+CGG | - | chr7.4:52153328-52153347 | MS.gene043683:intron | 50.0% | |
TGCACGCATGACAGCAACAA+AGG | + | chr7.4:52151825-52151844 | None:intergenic | 50.0% | |
TGTGAAATCGGAACCGGAAC+AGG | - | chr7.4:52153215-52153234 | MS.gene043683:intron | 50.0% | |
!! | GAAAGGTTTGTTACTGGGCC+TGG | - | chr7.4:52153000-52153019 | MS.gene043683:CDS | 50.0% |
!! | GGAAGGGTACTTTGTCTCCA+AGG | + | chr7.4:52151309-52151328 | None:intergenic | 50.0% |
!! | GGAGGGGAAAGGTTTGTTAC+TGG | - | chr7.4:52152994-52153013 | MS.gene043683:CDS | 50.0% |
!! | TGGATGGAAGGCATTTGCAG+AGG | - | chr7.4:52152327-52152346 | MS.gene043683:intron | 50.0% |
AGCCCACCAAAATTGCACCG+AGG | + | chr7.4:52152046-52152065 | None:intergenic | 55.0% | |
CACGAAGGAGGAGGATAAGC+GGG | - | chr7.4:52153329-52153348 | MS.gene043683:intron | 55.0% | |
CCGCCAGTTAAATCGCAACC+AGG | + | chr7.4:52153757-52153776 | None:intergenic | 55.0% | |
GGAGGAAGAAGAAGAGGAGG+AGG | - | chr7.4:52153413-52153432 | MS.gene043683:intron | 55.0% | |
GGATAAGCGGGACTTCACGA+AGG | - | chr7.4:52153341-52153360 | MS.gene043683:intron | 55.0% | |
GTCAAGTGTACCCATCCTGC+TGG | - | chr7.4:52153964-52153983 | MS.gene043683:intron | 55.0% | |
TAAGCGGGACTTCACGAAGG+AGG | - | chr7.4:52153344-52153363 | MS.gene043683:intron | 55.0% | |
!! | GCTTTGTTTATGACCCGCCC+AGG | + | chr7.4:52153021-52153040 | None:intergenic | 55.0% |
CCTCACGATCCAACCAAGCC+TGG | + | chr7.4:52153575-52153594 | None:intergenic | 60.0% | |
GATGCTATCGCCCATCCACC+TGG | - | chr7.4:52153736-52153755 | MS.gene043683:intron | 60.0% | |
GCAGGACTTCACGAAGGAGG+AGG | - | chr7.4:52153320-52153339 | MS.gene043683:intron | 60.0% | |
! | CCAGGCTTGGTTGGATCGTG+AGG | - | chr7.4:52153572-52153591 | MS.gene043683:CDS | 60.0% |
! | GTTTGTTACTGGGCCTGGGC+GGG | - | chr7.4:52153005-52153024 | MS.gene043683:CDS | 60.0% |
!! | GGTTTGTTACTGGGCCTGGG+CGG | - | chr7.4:52153004-52153023 | MS.gene043683:CDS | 60.0% |
GCGGGACTTCACGAAGGAGG+AGG | - | chr7.4:52153347-52153366 | MS.gene043683:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 52151237 | 52154125 | 52151237 | ID=MS.gene043683 |
chr7.4 | mRNA | 52151237 | 52154125 | 52151237 | ID=MS.gene043683.t1;Parent=MS.gene043683 |
chr7.4 | exon | 52154079 | 52154125 | 52154079 | ID=MS.gene043683.t1.exon1;Parent=MS.gene043683.t1 |
chr7.4 | CDS | 52154079 | 52154125 | 52154079 | ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1 |
chr7.4 | exon | 52153877 | 52153965 | 52153877 | ID=MS.gene043683.t1.exon2;Parent=MS.gene043683.t1 |
chr7.4 | CDS | 52153877 | 52153965 | 52153877 | ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1 |
chr7.4 | exon | 52153491 | 52153615 | 52153491 | ID=MS.gene043683.t1.exon3;Parent=MS.gene043683.t1 |
chr7.4 | CDS | 52153491 | 52153615 | 52153491 | ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1 |
chr7.4 | exon | 52152890 | 52153184 | 52152890 | ID=MS.gene043683.t1.exon4;Parent=MS.gene043683.t1 |
chr7.4 | CDS | 52152890 | 52153184 | 52152890 | ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1 |
chr7.4 | exon | 52151727 | 52152259 | 52151727 | ID=MS.gene043683.t1.exon5;Parent=MS.gene043683.t1 |
chr7.4 | CDS | 52151727 | 52152259 | 52151727 | ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1 |
chr7.4 | exon | 52151510 | 52151632 | 52151510 | ID=MS.gene043683.t1.exon6;Parent=MS.gene043683.t1 |
chr7.4 | CDS | 52151510 | 52151632 | 52151510 | ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1 |
chr7.4 | exon | 52151237 | 52151425 | 52151237 | ID=MS.gene043683.t1.exon7;Parent=MS.gene043683.t1 |
chr7.4 | CDS | 52151237 | 52151425 | 52151237 | ID=cds.MS.gene043683.t1;Parent=MS.gene043683.t1 |
Gene Sequence |
Protein sequence |