Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043685.t1 | ABD32483.2 | 76.6 | 171 | 20 | 1 | 1 | 151 | 6 | 176 | 2.30E-65 | 258.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043685.t1 | Q8L3W1 | 48.2 | 83 | 43 | 0 | 9 | 91 | 22 | 104 | 1.0e-16 | 88.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043685.t1 | Q2HSK0 | 76.6 | 171 | 20 | 1 | 1 | 151 | 6 | 176 | 1.7e-65 | 258.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043685.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043685.t1 | MTR_7g050710 | 76.608 | 171 | 20 | 1 | 1 | 151 | 1 | 171 | 6.02e-89 | 263 |
| MS.gene043685.t1 | MTR_7g050590 | 75.000 | 144 | 33 | 2 | 8 | 149 | 1 | 143 | 1.45e-72 | 221 |
| MS.gene043685.t1 | MTR_7g050580 | 77.037 | 135 | 24 | 2 | 8 | 142 | 28 | 155 | 2.04e-66 | 206 |
| MS.gene043685.t1 | MTR_3g098790 | 70.139 | 144 | 37 | 1 | 8 | 151 | 28 | 165 | 1.55e-64 | 201 |
| MS.gene043685.t1 | MTR_7g050720 | 65.517 | 145 | 47 | 1 | 8 | 149 | 25 | 169 | 2.71e-60 | 190 |
| MS.gene043685.t1 | MTR_7g050560 | 66.901 | 142 | 33 | 1 | 8 | 149 | 28 | 155 | 3.64e-60 | 189 |
| MS.gene043685.t1 | MTR_7g050640 | 65.823 | 79 | 27 | 0 | 8 | 86 | 28 | 106 | 2.03e-33 | 115 |
| MS.gene043685.t1 | MTR_3g061330 | 51.190 | 84 | 41 | 0 | 9 | 92 | 26 | 109 | 3.24e-27 | 103 |
| MS.gene043685.t1 | MTR_8g103940 | 37.908 | 153 | 86 | 3 | 9 | 158 | 55 | 201 | 6.38e-27 | 105 |
| MS.gene043685.t1 | MTR_3g061290 | 51.190 | 84 | 41 | 0 | 9 | 92 | 26 | 109 | 2.25e-26 | 99.8 |
| MS.gene043685.t1 | MTR_1g108780 | 48.315 | 89 | 46 | 0 | 5 | 93 | 9 | 97 | 5.97e-26 | 103 |
| MS.gene043685.t1 | MTR_3g061310 | 48.810 | 84 | 43 | 0 | 9 | 92 | 26 | 109 | 4.01e-25 | 98.6 |
| MS.gene043685.t1 | MTR_3g061340 | 50.588 | 85 | 41 | 1 | 9 | 92 | 26 | 110 | 7.49e-25 | 97.4 |
| MS.gene043685.t1 | MTR_3g061370 | 50.000 | 84 | 42 | 0 | 9 | 92 | 23 | 106 | 8.75e-25 | 97.4 |
| MS.gene043685.t1 | MTR_5g044670 | 46.429 | 84 | 45 | 0 | 8 | 91 | 31 | 114 | 1.15e-24 | 98.2 |
| MS.gene043685.t1 | MTR_3g061320 | 48.810 | 84 | 43 | 0 | 9 | 92 | 26 | 109 | 4.81e-24 | 95.5 |
| MS.gene043685.t1 | MTR_3g061350 | 47.619 | 84 | 44 | 0 | 9 | 92 | 26 | 109 | 5.29e-24 | 95.5 |
| MS.gene043685.t1 | MTR_1g035460 | 45.238 | 84 | 46 | 0 | 8 | 91 | 1 | 84 | 3.06e-22 | 92.4 |
| MS.gene043685.t1 | MTR_4g068320 | 40.964 | 83 | 49 | 0 | 9 | 91 | 22 | 104 | 2.41e-19 | 84.3 |
| MS.gene043685.t1 | MTR_1g035640 | 48.889 | 90 | 43 | 2 | 9 | 97 | 21 | 108 | 3.00e-19 | 84.3 |
| MS.gene043685.t1 | MTR_1g034240 | 40.964 | 83 | 49 | 0 | 9 | 91 | 23 | 105 | 6.21e-19 | 83.2 |
| MS.gene043685.t1 | MTR_1g050845 | 46.429 | 84 | 43 | 1 | 9 | 92 | 25 | 106 | 1.02e-18 | 83.2 |
| MS.gene043685.t1 | MTR_3g061220 | 40.476 | 84 | 37 | 1 | 9 | 92 | 26 | 96 | 1.12e-17 | 75.1 |
| MS.gene043685.t1 | MTR_1g035620 | 45.238 | 84 | 44 | 1 | 9 | 92 | 25 | 106 | 1.49e-17 | 79.3 |
| MS.gene043685.t1 | MTR_1g035570 | 44.444 | 90 | 47 | 2 | 9 | 97 | 21 | 108 | 3.11e-17 | 78.6 |
| MS.gene043685.t1 | MTR_3g005440 | 32.110 | 109 | 71 | 1 | 9 | 117 | 36 | 141 | 2.42e-16 | 75.9 |
| MS.gene043685.t1 | MTR_3g005440 | 34.694 | 98 | 64 | 0 | 12 | 109 | 261 | 358 | 6.06e-13 | 66.2 |
| MS.gene043685.t1 | MTR_3g005480 | 30.172 | 116 | 77 | 1 | 9 | 124 | 37 | 148 | 2.87e-16 | 74.3 |
| MS.gene043685.t1 | MTR_3g005495 | 35.644 | 101 | 65 | 0 | 9 | 109 | 259 | 359 | 3.00e-16 | 75.9 |
| MS.gene043685.t1 | MTR_3g005495 | 32.323 | 99 | 63 | 1 | 9 | 107 | 29 | 123 | 9.25e-16 | 74.3 |
| MS.gene043685.t1 | MTR_3g005490 | 31.034 | 116 | 76 | 1 | 9 | 124 | 37 | 148 | 4.88e-16 | 73.9 |
| MS.gene043685.t1 | MTR_3g005420 | 38.384 | 99 | 57 | 1 | 9 | 107 | 305 | 399 | 9.73e-16 | 74.3 |
| MS.gene043685.t1 | MTR_3g005420 | 29.268 | 123 | 78 | 3 | 9 | 130 | 56 | 170 | 1.37e-12 | 65.1 |
| MS.gene043685.t1 | MTR_3g005460 | 32.323 | 99 | 63 | 1 | 9 | 107 | 41 | 135 | 1.47e-15 | 73.9 |
| MS.gene043685.t1 | MTR_3g005460 | 34.314 | 102 | 66 | 1 | 9 | 109 | 278 | 379 | 2.74e-15 | 73.2 |
| MS.gene043685.t1 | MTR_1g035480 | 41.667 | 96 | 53 | 2 | 8 | 103 | 32 | 124 | 2.72e-15 | 70.5 |
| MS.gene043685.t1 | MTR_1g035650 | 33.113 | 151 | 91 | 5 | 9 | 154 | 25 | 170 | 1.16e-14 | 69.3 |
| MS.gene043685.t1 | MTR_6g043890 | 36.607 | 112 | 62 | 2 | 9 | 111 | 31 | 142 | 1.39e-14 | 70.5 |
| MS.gene043685.t1 | MTR_1g034210 | 36.047 | 86 | 55 | 0 | 9 | 94 | 23 | 108 | 1.64e-14 | 70.1 |
| MS.gene043685.t1 | MTR_5g070440 | 34.940 | 83 | 54 | 0 | 9 | 91 | 37 | 119 | 1.72e-14 | 69.7 |
| MS.gene043685.t1 | MTR_1g034210 | 36.047 | 86 | 55 | 0 | 9 | 94 | 23 | 108 | 2.29e-14 | 70.1 |
| MS.gene043685.t1 | MTR_1g035520 | 41.860 | 86 | 47 | 2 | 7 | 92 | 86 | 168 | 3.62e-14 | 69.7 |
| MS.gene043685.t1 | MTR_1g035510 | 39.583 | 96 | 55 | 2 | 8 | 103 | 1 | 93 | 4.70e-14 | 67.8 |
| MS.gene043685.t1 | MTR_1g021270 | 36.250 | 80 | 51 | 0 | 9 | 88 | 31 | 110 | 7.72e-13 | 65.9 |
| MS.gene043685.t1 | MTR_1g033740 | 38.542 | 96 | 56 | 2 | 8 | 103 | 37 | 129 | 8.11e-13 | 63.9 |
| MS.gene043685.t1 | MTR_1g021320 | 34.667 | 75 | 49 | 0 | 8 | 82 | 197 | 271 | 9.50e-13 | 65.9 |
| MS.gene043685.t1 | MTR_1g021320 | 36.000 | 75 | 48 | 0 | 8 | 82 | 40 | 114 | 5.16e-12 | 63.5 |
| MS.gene043685.t1 | MTR_1g021440 | 36.000 | 75 | 48 | 0 | 8 | 82 | 37 | 111 | 1.47e-12 | 64.7 |
| MS.gene043685.t1 | MTR_1g021290 | 30.097 | 103 | 69 | 1 | 8 | 107 | 170 | 272 | 1.54e-12 | 64.7 |
| MS.gene043685.t1 | MTR_1g021290 | 27.778 | 108 | 68 | 2 | 8 | 112 | 42 | 142 | 6.19e-11 | 60.1 |
| MS.gene043685.t1 | MTR_1g021440 | 36.000 | 75 | 48 | 0 | 8 | 82 | 37 | 111 | 1.59e-12 | 64.3 |
| MS.gene043685.t1 | MTR_1g021440 | 36.486 | 74 | 47 | 0 | 9 | 82 | 38 | 111 | 1.93e-12 | 64.7 |
| MS.gene043685.t1 | MTR_1g021440 | 36.486 | 74 | 47 | 0 | 9 | 82 | 38 | 111 | 2.04e-12 | 64.7 |
| MS.gene043685.t1 | MTR_3g005420 | 29.268 | 123 | 78 | 3 | 9 | 130 | 37 | 151 | 2.04e-12 | 64.7 |
| MS.gene043685.t1 | MTR_1g021400 | 35.135 | 74 | 48 | 0 | 9 | 82 | 46 | 119 | 2.80e-12 | 64.3 |
| MS.gene043685.t1 | MTR_1g021435 | 35.802 | 81 | 51 | 1 | 9 | 88 | 38 | 118 | 3.43e-12 | 63.9 |
| MS.gene043685.t1 | MTR_4g119990 | 38.202 | 89 | 54 | 1 | 9 | 96 | 31 | 119 | 4.08e-12 | 63.5 |
| MS.gene043685.t1 | MTR_6g061070 | 42.353 | 85 | 46 | 2 | 8 | 92 | 33 | 114 | 6.07e-12 | 63.2 |
| MS.gene043685.t1 | MTR_1g021360 | 36.486 | 74 | 47 | 0 | 9 | 82 | 198 | 271 | 8.04e-12 | 63.2 |
| MS.gene043685.t1 | MTR_1g021360 | 29.167 | 144 | 91 | 2 | 9 | 151 | 41 | 174 | 1.95e-11 | 62.0 |
| MS.gene043685.t1 | MTR_1g021410 | 32.895 | 76 | 51 | 0 | 9 | 84 | 38 | 113 | 1.21e-11 | 62.4 |
| MS.gene043685.t1 | MTR_1g021380 | 35.135 | 74 | 48 | 0 | 9 | 82 | 37 | 110 | 1.23e-11 | 62.4 |
| MS.gene043685.t1 | MTR_1g021350 | 32.911 | 79 | 53 | 0 | 9 | 87 | 37 | 115 | 1.50e-11 | 62.0 |
| MS.gene043685.t1 | MTR_1g021330 | 29.752 | 121 | 84 | 1 | 9 | 128 | 42 | 162 | 2.94e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043685.t1 | AT3G18990 | 48.193 | 83 | 43 | 0 | 9 | 91 | 22 | 104 | 1.10e-21 | 90.1 |
| MS.gene043685.t1 | AT3G18990 | 48.193 | 83 | 43 | 0 | 9 | 91 | 22 | 104 | 1.52e-21 | 90.1 |
| MS.gene043685.t1 | AT4G01580 | 43.182 | 88 | 50 | 0 | 9 | 96 | 46 | 133 | 1.44e-18 | 79.3 |
| MS.gene043685.t1 | AT1G49475 | 39.806 | 103 | 58 | 2 | 1 | 100 | 39 | 140 | 1.74e-18 | 79.0 |
| MS.gene043685.t1 | AT3G18960 | 39.583 | 96 | 58 | 0 | 1 | 96 | 1 | 96 | 4.96e-18 | 77.4 |
| MS.gene043685.t1 | AT3G18960 | 42.045 | 88 | 51 | 0 | 9 | 96 | 46 | 133 | 1.18e-17 | 77.4 |
| MS.gene043685.t1 | AT3G18960 | 42.045 | 88 | 51 | 0 | 9 | 96 | 46 | 133 | 1.19e-17 | 77.0 |
Find 27 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTTGTACCTCAAATT+TGG | 0.180864 | 7.4:+52168388 | None:intergenic |
| TGCAAAATGGAAATTAAATT+TGG | 0.194062 | 7.4:-52168516 | MS.gene043685:CDS |
| TTTCATCAACAATGTGAAAT+TGG | 0.209794 | 7.4:-52168227 | MS.gene043685:CDS |
| AAATTTGAGGTACAAATCTT+TGG | 0.253897 | 7.4:-52168386 | MS.gene043685:CDS |
| GTCTCTACACATATAGCTTT+TGG | 0.322992 | 7.4:+52168548 | None:intergenic |
| TACGTCTTCTTCATTGTGTC+AGG | 0.377119 | 7.4:-52168120 | MS.gene043685:CDS |
| AGACTCCAAATGGTGCAAAA+TGG | 0.405129 | 7.4:-52168529 | MS.gene043685:CDS |
| GACGTAAAATCGTATACCTT+TGG | 0.413258 | 7.4:+52168137 | None:intergenic |
| AATCTTTGGAAAGAGTGCTT+TGG | 0.429279 | 7.4:-52168372 | MS.gene043685:CDS |
| AGATATGGTTTGAGAAGGGT+TGG | 0.481735 | 7.4:-52168478 | MS.gene043685:CDS |
| GGTGATGCCAAGAAAGTTTG+TGG | 0.482121 | 7.4:-52168591 | MS.gene043685:CDS |
| ATCGTAGAGCAGCTCAAAAG+AGG | 0.502355 | 7.4:-52168271 | MS.gene043685:CDS |
| AGGTTTATTTCCTTGACCAT+TGG | 0.505200 | 7.4:+52168307 | None:intergenic |
| TGGCAAGATATGGTTTGAGA+AGG | 0.555350 | 7.4:-52168483 | MS.gene043685:CDS |
| GAGCATCACTCTCTAGCTCA+TGG | 0.577825 | 7.4:-52168443 | MS.gene043685:CDS |
| ACATGGAAAATCACAGAAGG+TGG | 0.578238 | 7.4:-52168186 | MS.gene043685:CDS |
| ACATTGTTGATGAAATTCAA+AGG | 0.586074 | 7.4:+52168235 | None:intergenic |
| ATATGTGTAGAGACTCCAAA+TGG | 0.588670 | 7.4:-52168539 | MS.gene043685:CDS |
| AGCAGTAGTTGTGTAAAACA+TGG | 0.593692 | 7.4:-52168203 | MS.gene043685:CDS |
| AAGAAGGTCTCCAATGGTCA+AGG | 0.600566 | 7.4:-52168317 | MS.gene043685:CDS |
| GGCAAGATATGGTTTGAGAA+GGG | 0.606783 | 7.4:-52168482 | MS.gene043685:CDS |
| CAAATTGATAGAATGTCCAA+AGG | 0.647085 | 7.4:-52168153 | MS.gene043685:CDS |
| CAAGGAAATAAACCTCCGAA+TGG | 0.648381 | 7.4:-52168299 | MS.gene043685:CDS |
| GAAGCTAAGAAGGTCTCCAA+TGG | 0.650536 | 7.4:-52168323 | MS.gene043685:CDS |
| AAAACATGGAAAATCACAGA+AGG | 0.656002 | 7.4:-52168189 | MS.gene043685:CDS |
| TTGTTGATGAAATTCAAAGG+AGG | 0.689383 | 7.4:+52168238 | None:intergenic |
| CATGGCTAGTGAGATTGCTG+AGG | 0.696319 | 7.4:-52169390 | MS.gene043685:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTTACATTACTTT+AGG | + | chr7.4:52168834-52168853 | None:intergenic | 10.0% |
| !! | AATAAATAAAATTTCTCTCT+AGG | + | chr7.4:52168657-52168676 | None:intergenic | 15.0% |
| !! | AGTTATTTATTTGTATTAGA+GGG | + | chr7.4:52168566-52168585 | None:intergenic | 15.0% |
| !! | TCACATAAACATTTATAATA+TGG | + | chr7.4:52168326-52168345 | None:intergenic | 15.0% |
| !!! | AGATTACTTGTTAAAAATTT+GGG | - | chr7.4:52168702-52168721 | MS.gene043685:intron | 15.0% |
| !!! | ATGTTATTTATGTTTGTATT+TGG | - | chr7.4:52168240-52168259 | MS.gene043685:CDS | 15.0% |
| !!! | TAGATTACTTGTTAAAAATT+TGG | - | chr7.4:52168701-52168720 | MS.gene043685:intron | 15.0% |
| !! | AACAACAACAAATAATCTAA+AGG | + | chr7.4:52168189-52168208 | None:intergenic | 20.0% |
| !! | ATCAATTGTTCATGTAATTT+AGG | + | chr7.4:52168453-52168472 | None:intergenic | 20.0% |
| !! | ATTTATAATATGGCATCATA+AGG | + | chr7.4:52168316-52168335 | None:intergenic | 20.0% |
| !! | GAGTTATTTATTTGTATTAG+AGG | + | chr7.4:52168567-52168586 | None:intergenic | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | chr7.4:52168973-52168992 | MS.gene043685:intron | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7.4:52168986-52169005 | MS.gene043685:intron | 20.0% |
| !!! | AACTCTAAATTTGAAATTAC+TGG | + | chr7.4:52168365-52168384 | None:intergenic | 20.0% |
| !!! | TTTTAAGAACGTTTCTTTTT+AGG | - | chr7.4:52168520-52168539 | MS.gene043685:CDS | 20.0% |
| ! | AAAGATTTGTACCTCAAATT+TGG | + | chr7.4:52169104-52169123 | None:intergenic | 25.0% |
| ! | AGAAAGTTTGTGGAAAAATA+TGG | - | chr7.4:52168908-52168927 | MS.gene043685:intron | 25.0% |
| ! | ATATGGTGTAATTAATTGAC+AGG | - | chr7.4:52168877-52168896 | MS.gene043685:intron | 25.0% |
| ! | TGAAAAAACTTCCAAATTTG+AGG | - | chr7.4:52169090-52169109 | MS.gene043685:intron | 25.0% |
| ! | TTTATTCAATTTGTCCCATT+TGG | - | chr7.4:52168776-52168795 | MS.gene043685:intron | 25.0% |
| ! | TTTCATCAACAATGTGAAAT+TGG | - | chr7.4:52169262-52169281 | MS.gene043685:intron | 25.0% |
| ! | TTTGTGGAAAAATATGGAAA+AGG | - | chr7.4:52168914-52168933 | MS.gene043685:intron | 25.0% |
| !! | AAATTTGAGGTACAAATCTT+TGG | - | chr7.4:52169103-52169122 | MS.gene043685:intron | 25.0% |
| !! | ACATTGTTGATGAAATTCAA+AGG | + | chr7.4:52169257-52169276 | None:intergenic | 25.0% |
| !! | TATTTTTCCACAAACTTTCT+TGG | + | chr7.4:52168908-52168927 | None:intergenic | 25.0% |
| !!! | AAATTACTGGTTTTACTGTT+AGG | + | chr7.4:52168352-52168371 | None:intergenic | 25.0% |
| AAAACATGGAAAATCACAGA+AGG | - | chr7.4:52169300-52169319 | MS.gene043685:intron | 30.0% | |
| AACTACCTGATGAGTATTTA+GGG | - | chr7.4:52168612-52168631 | MS.gene043685:intron | 30.0% | |
| ATGATCTTGAAAAAGTGGAT+TGG | + | chr7.4:52168130-52168149 | None:intergenic | 30.0% | |
| CAAAAAAGTTGAAGCTAAGA+AGG | - | chr7.4:52169156-52169175 | MS.gene043685:intron | 30.0% | |
| CAAATTGATAGAATGTCCAA+AGG | - | chr7.4:52169336-52169355 | MS.gene043685:intron | 30.0% | |
| CTCCTGTAATAAACATAATC+CGG | - | chr7.4:52168584-52168603 | MS.gene043685:CDS | 30.0% | |
| TAAAAAGTGATGGCAAGATA+TGG | - | chr7.4:52168996-52169015 | MS.gene043685:intron | 30.0% | |
| TAACTACCTGATGAGTATTT+AGG | - | chr7.4:52168611-52168630 | MS.gene043685:intron | 30.0% | |
| TAAGGATGATCTTGAAAAAG+TGG | + | chr7.4:52168135-52168154 | None:intergenic | 30.0% | |
| TACCGGATTATGTTTATTAC+AGG | + | chr7.4:52168589-52168608 | None:intergenic | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | chr7.4:52168968-52168987 | None:intergenic | 30.0% |
| ! | TACATTACTTTAGGAAGTAC+TGG | + | chr7.4:52168825-52168844 | None:intergenic | 30.0% |
| ! | TGAAATAGAGCTGTCAATTT+TGG | - | chr7.4:52168406-52168425 | MS.gene043685:CDS | 30.0% |
| ! | TTGTTGATGAAATTCAAAGG+AGG | + | chr7.4:52169254-52169273 | None:intergenic | 30.0% |
| !! | TCAATTTTGGTCAAACCTAA+TGG | - | chr7.4:52168419-52168438 | MS.gene043685:CDS | 30.0% |
| ACTACCTGATGAGTATTTAG+GGG | - | chr7.4:52168613-52168632 | MS.gene043685:intron | 35.0% | |
| AGCAGTAGTTGTGTAAAACA+TGG | - | chr7.4:52169286-52169305 | MS.gene043685:intron | 35.0% | |
| AGGTTTATTTCCTTGACCAT+TGG | + | chr7.4:52169185-52169204 | None:intergenic | 35.0% | |
| ATATGTGTAGAGACTCCAAA+TGG | - | chr7.4:52168950-52168969 | MS.gene043685:intron | 35.0% | |
| GACGTAAAATCGTATACCTT+TGG | + | chr7.4:52169355-52169374 | None:intergenic | 35.0% | |
| ! | GTCTCTACACATATAGCTTT+TGG | + | chr7.4:52168944-52168963 | None:intergenic | 35.0% |
| !! | AATCTTTGGAAAGAGTGCTT+TGG | - | chr7.4:52169117-52169136 | MS.gene043685:intron | 35.0% |
| !! | ATTGATTCATTTTGCCAGTC+CGG | - | chr7.4:52168467-52168486 | MS.gene043685:CDS | 35.0% |
| AAAGGCTTACAAGCTTTCCT+TGG | + | chr7.4:52168171-52168190 | None:intergenic | 40.0% | |
| AATTTGTCCCATTTGGCTAG+GGG | - | chr7.4:52168783-52168802 | MS.gene043685:intron | 40.0% | |
| ACATGGAAAATCACAGAAGG+TGG | - | chr7.4:52169303-52169322 | MS.gene043685:intron | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | chr7.4:52168960-52168979 | MS.gene043685:intron | 40.0% | |
| AGATATGGTTTGAGAAGGGT+TGG | - | chr7.4:52169011-52169030 | MS.gene043685:intron | 40.0% | |
| AGCCTAAAACACACCAGTTT+GGG | + | chr7.4:52168738-52168757 | None:intergenic | 40.0% | |
| CAAGGAAATAAACCTCCGAA+TGG | - | chr7.4:52169190-52169209 | MS.gene043685:intron | 40.0% | |
| CAATTTGTCCCATTTGGCTA+GGG | - | chr7.4:52168782-52168801 | MS.gene043685:intron | 40.0% | |
| CTACCTGATGAGTATTTAGG+GGG | - | chr7.4:52168614-52168633 | MS.gene043685:intron | 40.0% | |
| CTCATCAGGTAGTTATCTAC+CGG | + | chr7.4:52168606-52168625 | None:intergenic | 40.0% | |
| CTTACTGAAAACCTTCTCCA+AGG | - | chr7.4:52168151-52168170 | MS.gene043685:CDS | 40.0% | |
| GGCAAGATATGGTTTGAGAA+GGG | - | chr7.4:52169007-52169026 | MS.gene043685:intron | 40.0% | |
| TACGTCTTCTTCATTGTGTC+AGG | - | chr7.4:52169369-52169388 | MS.gene043685:intron | 40.0% | |
| TAGCCTAAAACACACCAGTT+TGG | + | chr7.4:52168739-52168758 | None:intergenic | 40.0% | |
| TAGGGGGCTTAGAGATATTT+GGG | - | chr7.4:52168630-52168649 | MS.gene043685:intron | 40.0% | |
| TCAATTTGTCCCATTTGGCT+AGG | - | chr7.4:52168781-52168800 | MS.gene043685:intron | 40.0% | |
| TGGCAAGATATGGTTTGAGA+AGG | - | chr7.4:52169006-52169025 | MS.gene043685:intron | 40.0% | |
| TTACAAGCTTTCCTTGGAGA+AGG | + | chr7.4:52168165-52168184 | None:intergenic | 40.0% | |
| TTAGGGGGCTTAGAGATATT+TGG | - | chr7.4:52168629-52168648 | MS.gene043685:intron | 40.0% | |
| ! | AAAACACACCAGTTTGGGTT+TGG | + | chr7.4:52168733-52168752 | None:intergenic | 40.0% |
| ! | AACCCAAACTGGTGTGTTTT+AGG | - | chr7.4:52168733-52168752 | MS.gene043685:intron | 40.0% |
| ! | ATTTAGGAGTGCAGTCCATT+AGG | + | chr7.4:52168437-52168456 | None:intergenic | 40.0% |
| ! | CTTGGAGAAGGTTTTCAGTA+AGG | + | chr7.4:52168153-52168172 | None:intergenic | 40.0% |
| ! | GCTCTACGATTTTCACCATT+CGG | + | chr7.4:52169208-52169227 | None:intergenic | 40.0% |
| !! | GGTGTGTTTTAGGCTATGAA+CGG | - | chr7.4:52168743-52168762 | MS.gene043685:intron | 40.0% |
| AAGAAGGTCTCCAATGGTCA+AGG | - | chr7.4:52169172-52169191 | MS.gene043685:intron | 45.0% | |
| AAGCCCCCTAAATACTCATC+AGG | + | chr7.4:52168620-52168639 | None:intergenic | 45.0% | |
| AGGGCCTTAGAGATATTTGC+GGG | + | chr7.4:52168547-52168566 | None:intergenic | 45.0% | |
| AGGGGGCTTAGAGATATTTG+GGG | - | chr7.4:52168631-52168650 | MS.gene043685:intron | 45.0% | |
| ATAAAGCCGAGTGAACCAAC+CGG | + | chr7.4:52168489-52168508 | None:intergenic | 45.0% | |
| ATCGTAGAGCAGCTCAAAAG+AGG | - | chr7.4:52169218-52169237 | MS.gene043685:intron | 45.0% | |
| ATTTGTCCCATTTGGCTAGG+GGG | - | chr7.4:52168784-52168803 | MS.gene043685:intron | 45.0% | |
| GAAGCTAAGAAGGTCTCCAA+TGG | - | chr7.4:52169166-52169185 | MS.gene043685:intron | 45.0% | |
| GAGGGCCTTAGAGATATTTG+CGG | + | chr7.4:52168548-52168567 | None:intergenic | 45.0% | |
| GGTGATGCCAAGAAAGTTTG+TGG | - | chr7.4:52168898-52168917 | MS.gene043685:intron | 45.0% | |
| ! | ATTCATTTTGCCAGTCCGGT+TGG | - | chr7.4:52168471-52168490 | MS.gene043685:CDS | 45.0% |
| ! | CTACGATTTTCACCATTCGG+AGG | + | chr7.4:52169205-52169224 | None:intergenic | 45.0% |
| ! | TTGGCTTGAAGAAACACGAG+AGG | - | chr7.4:52168259-52168278 | MS.gene043685:CDS | 45.0% |
| !! | TTATATAATTCATATTAATA+TGG | - | chr7.4:52168860-52168879 | MS.gene043685:intron | 5.0% |
| ACAAACCCCCCTAGCCAAAT+GGG | + | chr7.4:52168793-52168812 | None:intergenic | 50.0% | |
| AGGCCCCGCAAATATCTCTA+AGG | - | chr7.4:52168540-52168559 | MS.gene043685:CDS | 50.0% | |
| GGGCCTTAGAGATATTTGCG+GGG | + | chr7.4:52168546-52168565 | None:intergenic | 50.0% | |
| TTTGTCCCATTTGGCTAGGG+GGG | - | chr7.4:52168785-52168804 | MS.gene043685:intron | 50.0% | |
| ! | GAGCATCACTCTCTAGCTCA+TGG | - | chr7.4:52169046-52169065 | MS.gene043685:intron | 50.0% |
| CACAAACCCCCCTAGCCAAA+TGG | + | chr7.4:52168794-52168813 | None:intergenic | 55.0% | |
| GGGCTTAGCCAAACCCAAAC+TGG | - | chr7.4:52168722-52168741 | MS.gene043685:intron | 55.0% | |
| TTTGGCTAGGGGGGTTTGTG+TGG | - | chr7.4:52168794-52168813 | MS.gene043685:intron | 55.0% | |
| ! | GCCAGTCCGGTTGGTTCACT+CGG | - | chr7.4:52168480-52168499 | MS.gene043685:CDS | 60.0% |
| GCCGAGTGAACCAACCGGAC+TGG | + | chr7.4:52168484-52168503 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52168100 | 52169411 | 52168100 | ID=MS.gene043685 |
| chr7.4 | mRNA | 52168100 | 52169411 | 52168100 | ID=MS.gene043685.t1;Parent=MS.gene043685 |
| chr7.4 | exon | 52169391 | 52169411 | 52169391 | ID=MS.gene043685.t1.exon1;Parent=MS.gene043685.t1 |
| chr7.4 | CDS | 52169391 | 52169411 | 52169391 | ID=cds.MS.gene043685.t1;Parent=MS.gene043685.t1 |
| chr7.4 | exon | 52168100 | 52168612 | 52168100 | ID=MS.gene043685.t1.exon2;Parent=MS.gene043685.t1 |
| chr7.4 | CDS | 52168100 | 52168612 | 52168100 | ID=cds.MS.gene043685.t1;Parent=MS.gene043685.t1 |
| Gene Sequence |
| Protein sequence |
