Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043693.t1 | ABD32483.2 | 89.4 | 180 | 19 | 0 | 9 | 188 | 1 | 180 | 1.00E-88 | 336.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043693.t1 | Q8L3W1 | 41.4 | 99 | 58 | 0 | 26 | 124 | 6 | 104 | 3.1e-17 | 90.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043693.t1 | Q2HSK0 | 89.4 | 180 | 19 | 0 | 9 | 188 | 1 | 180 | 7.5e-89 | 336.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043693.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043693.t1 | MTR_7g050710 | 90.286 | 175 | 17 | 0 | 14 | 188 | 1 | 175 | 8.74e-117 | 335 |
| MS.gene043693.t1 | MTR_7g050580 | 76.543 | 162 | 31 | 2 | 14 | 175 | 1 | 155 | 1.09e-82 | 248 |
| MS.gene043693.t1 | MTR_3g098790 | 66.857 | 175 | 52 | 1 | 14 | 188 | 1 | 169 | 4.20e-80 | 242 |
| MS.gene043693.t1 | MTR_7g050560 | 66.272 | 169 | 43 | 1 | 14 | 182 | 1 | 155 | 3.19e-73 | 224 |
| MS.gene043693.t1 | MTR_7g050590 | 68.874 | 151 | 43 | 3 | 41 | 188 | 1 | 150 | 2.19e-67 | 209 |
| MS.gene043693.t1 | MTR_7g050720 | 63.253 | 166 | 58 | 1 | 20 | 182 | 4 | 169 | 9.24e-67 | 208 |
| MS.gene043693.t1 | MTR_7g050640 | 65.094 | 106 | 37 | 0 | 14 | 119 | 1 | 106 | 9.12e-45 | 145 |
| MS.gene043693.t1 | MTR_3g061290 | 53.398 | 103 | 46 | 1 | 23 | 125 | 9 | 109 | 1.75e-33 | 119 |
| MS.gene043693.t1 | MTR_3g061330 | 51.456 | 103 | 48 | 1 | 23 | 125 | 9 | 109 | 1.03e-32 | 118 |
| MS.gene043693.t1 | MTR_8g103940 | 38.889 | 162 | 90 | 3 | 24 | 182 | 37 | 192 | 1.61e-32 | 122 |
| MS.gene043693.t1 | MTR_3g061320 | 50.485 | 103 | 49 | 1 | 23 | 125 | 9 | 109 | 3.16e-30 | 112 |
| MS.gene043693.t1 | MTR_3g061310 | 48.544 | 103 | 51 | 1 | 23 | 125 | 9 | 109 | 1.49e-29 | 111 |
| MS.gene043693.t1 | MTR_3g061370 | 48.148 | 108 | 54 | 1 | 18 | 125 | 1 | 106 | 4.97e-29 | 109 |
| MS.gene043693.t1 | MTR_5g044670 | 47.475 | 99 | 52 | 0 | 26 | 124 | 16 | 114 | 1.58e-28 | 109 |
| MS.gene043693.t1 | MTR_3g061340 | 50.000 | 104 | 49 | 2 | 23 | 125 | 9 | 110 | 1.74e-28 | 108 |
| MS.gene043693.t1 | MTR_3g061350 | 46.429 | 112 | 57 | 2 | 14 | 125 | 1 | 109 | 4.38e-28 | 107 |
| MS.gene043693.t1 | MTR_1g108780 | 50.549 | 91 | 42 | 1 | 34 | 124 | 8 | 95 | 2.61e-25 | 102 |
| MS.gene043693.t1 | MTR_3g061220 | 43.689 | 103 | 43 | 2 | 23 | 125 | 9 | 96 | 2.94e-23 | 90.5 |
| MS.gene043693.t1 | MTR_1g035460 | 46.512 | 86 | 46 | 0 | 41 | 126 | 1 | 86 | 3.80e-23 | 95.9 |
| MS.gene043693.t1 | MTR_1g050845 | 44.660 | 103 | 55 | 1 | 23 | 125 | 6 | 106 | 3.03e-21 | 91.7 |
| MS.gene043693.t1 | MTR_1g035620 | 43.689 | 103 | 56 | 1 | 23 | 125 | 6 | 106 | 7.44e-21 | 89.7 |
| MS.gene043693.t1 | MTR_3g005480 | 35.455 | 110 | 71 | 0 | 18 | 127 | 13 | 122 | 9.50e-21 | 87.4 |
| MS.gene043693.t1 | MTR_1g035650 | 36.567 | 134 | 83 | 1 | 23 | 156 | 6 | 137 | 4.48e-20 | 84.3 |
| MS.gene043693.t1 | MTR_1g035480 | 41.739 | 115 | 64 | 2 | 22 | 136 | 13 | 124 | 7.93e-20 | 83.2 |
| MS.gene043693.t1 | MTR_6g043890 | 37.692 | 130 | 72 | 2 | 24 | 144 | 13 | 142 | 1.08e-19 | 85.9 |
| MS.gene043693.t1 | MTR_4g119990 | 41.121 | 107 | 62 | 1 | 24 | 129 | 13 | 119 | 1.29e-19 | 85.9 |
| MS.gene043693.t1 | MTR_1g034240 | 38.384 | 99 | 61 | 0 | 26 | 124 | 7 | 105 | 1.68e-19 | 85.9 |
| MS.gene043693.t1 | MTR_3g005490 | 32.308 | 130 | 79 | 2 | 25 | 154 | 20 | 140 | 2.18e-19 | 84.0 |
| MS.gene043693.t1 | MTR_1g035640 | 47.000 | 100 | 47 | 2 | 26 | 125 | 9 | 102 | 2.39e-19 | 85.9 |
| MS.gene043693.t1 | MTR_1g035500 | 38.136 | 118 | 70 | 2 | 19 | 136 | 18 | 132 | 7.31e-19 | 80.9 |
| MS.gene043693.t1 | MTR_4g068320 | 35.354 | 99 | 64 | 0 | 26 | 124 | 6 | 104 | 1.28e-18 | 83.6 |
| MS.gene043693.t1 | MTR_3g005460 | 31.852 | 135 | 88 | 2 | 12 | 142 | 245 | 379 | 2.12e-17 | 80.1 |
| MS.gene043693.t1 | MTR_3g005460 | 31.967 | 122 | 79 | 1 | 19 | 140 | 18 | 135 | 2.99e-17 | 79.7 |
| MS.gene043693.t1 | MTR_3g005495 | 34.921 | 126 | 80 | 1 | 17 | 142 | 236 | 359 | 2.73e-17 | 79.7 |
| MS.gene043693.t1 | MTR_3g005495 | 29.630 | 135 | 80 | 2 | 42 | 165 | 29 | 159 | 3.21e-16 | 76.6 |
| MS.gene043693.t1 | MTR_5g070440 | 32.039 | 103 | 70 | 0 | 25 | 127 | 20 | 122 | 3.82e-17 | 77.8 |
| MS.gene043693.t1 | MTR_3g005420 | 32.653 | 147 | 88 | 3 | 17 | 163 | 282 | 417 | 6.34e-17 | 79.0 |
| MS.gene043693.t1 | MTR_3g005420 | 30.986 | 142 | 88 | 4 | 25 | 160 | 39 | 176 | 6.33e-15 | 73.2 |
| MS.gene043693.t1 | MTR_6g061070 | 42.056 | 107 | 59 | 2 | 19 | 125 | 11 | 114 | 7.04e-17 | 78.6 |
| MS.gene043693.t1 | MTR_1g033740 | 38.136 | 118 | 70 | 2 | 19 | 136 | 15 | 129 | 9.84e-17 | 75.5 |
| MS.gene043693.t1 | MTR_1g021400 | 36.957 | 92 | 58 | 0 | 24 | 115 | 28 | 119 | 3.07e-16 | 76.3 |
| MS.gene043693.t1 | MTR_1g035570 | 42.857 | 91 | 50 | 1 | 35 | 125 | 14 | 102 | 3.97e-16 | 76.3 |
| MS.gene043693.t1 | MTR_1g034210 | 36.275 | 102 | 65 | 0 | 26 | 127 | 7 | 108 | 5.67e-16 | 75.5 |
| MS.gene043693.t1 | MTR_1g034210 | 36.275 | 102 | 65 | 0 | 26 | 127 | 7 | 108 | 8.24e-16 | 75.1 |
| MS.gene043693.t1 | MTR_1g021320 | 36.957 | 92 | 58 | 0 | 24 | 115 | 23 | 114 | 1.19e-15 | 75.5 |
| MS.gene043693.t1 | MTR_1g021320 | 33.654 | 104 | 66 | 2 | 24 | 126 | 182 | 283 | 1.11e-13 | 69.7 |
| MS.gene043693.t1 | MTR_1g021440 | 36.957 | 92 | 57 | 1 | 24 | 115 | 21 | 111 | 1.61e-15 | 73.6 |
| MS.gene043693.t1 | MTR_1g021440 | 36.957 | 92 | 57 | 1 | 24 | 115 | 21 | 111 | 1.79e-15 | 73.6 |
| MS.gene043693.t1 | MTR_1g035440 | 37.037 | 108 | 61 | 2 | 24 | 127 | 13 | 117 | 2.41e-15 | 72.8 |
| MS.gene043693.t1 | MTR_3g005440 | 33.036 | 112 | 70 | 2 | 40 | 150 | 34 | 141 | 3.03e-15 | 73.9 |
| MS.gene043693.t1 | MTR_3g005440 | 29.661 | 118 | 83 | 0 | 25 | 142 | 241 | 358 | 3.71e-12 | 64.7 |
| MS.gene043693.t1 | MTR_1g021440 | 36.957 | 92 | 57 | 1 | 24 | 115 | 21 | 111 | 4.47e-15 | 73.2 |
| MS.gene043693.t1 | MTR_1g021440 | 36.957 | 92 | 57 | 1 | 24 | 115 | 21 | 111 | 4.84e-15 | 73.2 |
| MS.gene043693.t1 | MTR_1g035520 | 44.706 | 85 | 44 | 2 | 41 | 125 | 87 | 168 | 7.89e-15 | 72.4 |
| MS.gene043693.t1 | MTR_3g005420 | 30.986 | 142 | 88 | 4 | 25 | 160 | 20 | 157 | 9.22e-15 | 72.4 |
| MS.gene043693.t1 | MTR_1g035510 | 38.889 | 108 | 63 | 2 | 41 | 148 | 1 | 105 | 1.93e-14 | 69.7 |
| MS.gene043693.t1 | MTR_1g021360 | 31.325 | 166 | 99 | 3 | 25 | 185 | 20 | 175 | 3.63e-14 | 70.9 |
| MS.gene043693.t1 | MTR_1g021360 | 34.783 | 92 | 58 | 1 | 24 | 115 | 182 | 271 | 5.77e-13 | 67.4 |
| MS.gene043693.t1 | MTR_1g021435 | 34.615 | 104 | 67 | 1 | 24 | 126 | 20 | 123 | 4.36e-14 | 70.1 |
| MS.gene043693.t1 | MTR_1g021380 | 35.577 | 104 | 65 | 2 | 24 | 126 | 20 | 122 | 5.13e-14 | 70.1 |
| MS.gene043693.t1 | MTR_1g021290 | 35.644 | 101 | 63 | 2 | 27 | 126 | 157 | 256 | 7.39e-14 | 69.3 |
| MS.gene043693.t1 | MTR_1g021290 | 30.894 | 123 | 78 | 3 | 24 | 145 | 26 | 142 | 4.27e-12 | 64.3 |
| MS.gene043693.t1 | MTR_1g021350 | 31.915 | 141 | 86 | 5 | 24 | 160 | 20 | 154 | 1.05e-13 | 68.9 |
| MS.gene043693.t1 | MTR_1g021330 | 30.216 | 139 | 96 | 1 | 24 | 161 | 24 | 162 | 1.26e-13 | 68.9 |
| MS.gene043693.t1 | MTR_1g021410 | 33.684 | 95 | 62 | 1 | 24 | 118 | 21 | 114 | 1.78e-13 | 68.6 |
| MS.gene043693.t1 | MTR_1g021270 | 31.452 | 124 | 81 | 2 | 21 | 141 | 11 | 133 | 1.80e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043693.t1 | AT3G18990 | 41.414 | 99 | 58 | 0 | 26 | 124 | 6 | 104 | 1.07e-21 | 91.3 |
| MS.gene043693.t1 | AT3G18990 | 41.414 | 99 | 58 | 0 | 26 | 124 | 6 | 104 | 1.89e-21 | 90.9 |
| MS.gene043693.t1 | AT1G49475 | 38.889 | 108 | 65 | 1 | 26 | 133 | 34 | 140 | 3.00e-21 | 87.0 |
| MS.gene043693.t1 | AT4G01580 | 39.423 | 104 | 63 | 0 | 26 | 129 | 30 | 133 | 1.11e-20 | 85.9 |
| MS.gene043693.t1 | AT3G18960 | 39.423 | 104 | 63 | 0 | 26 | 129 | 30 | 133 | 3.50e-20 | 84.3 |
| MS.gene043693.t1 | AT3G18960 | 39.423 | 104 | 63 | 0 | 26 | 129 | 30 | 133 | 4.09e-20 | 84.7 |
| MS.gene043693.t1 | AT3G18960 | 43.182 | 88 | 50 | 0 | 42 | 129 | 9 | 96 | 1.58e-17 | 77.0 |
| MS.gene043693.t1 | AT4G33280 | 35.000 | 100 | 61 | 2 | 25 | 120 | 19 | 118 | 5.54e-12 | 63.9 |
| MS.gene043693.t1 | AT4G33280 | 35.000 | 100 | 61 | 2 | 25 | 120 | 19 | 118 | 7.58e-12 | 63.9 |
| MS.gene043693.t1 | AT4G33280 | 35.000 | 100 | 61 | 2 | 25 | 120 | 19 | 118 | 9.75e-12 | 63.5 |
| MS.gene043693.t1 | AT3G53310 | 31.731 | 104 | 68 | 3 | 14 | 117 | 1 | 101 | 4.33e-11 | 61.2 |
Find 34 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTTGTACCTCAAATT+TGG | 0.180864 | 7.4:+52275804 | None:intergenic |
| TGCAAAATGGAAATTAAATT+TGG | 0.185593 | 7.4:-52275932 | MS.gene043693:CDS |
| TTTCATCGACAATGTGAAAT+TGG | 0.216786 | 7.4:-52275643 | MS.gene043693:CDS |
| AGCAGTAGTTGTGTAAAATT+TGG | 0.230825 | 7.4:-52275619 | MS.gene043693:CDS |
| AAATTTGAGGTACAAATCTT+TGG | 0.253897 | 7.4:-52275802 | MS.gene043693:CDS |
| GTCTCTAGACATATAGCTTT+TGG | 0.313968 | 7.4:+52275964 | None:intergenic |
| AGACTCCAAATGGTGCAAAA+TGG | 0.357064 | 7.4:-52275945 | MS.gene043693:CDS |
| TACGTCTTCTTCATTGTGTC+AGG | 0.377119 | 7.4:-52275539 | MS.gene043693:CDS |
| GGATATATAGCAAAGCTCTT+TGG | 0.406586 | 7.4:-52277157 | MS.gene043693:intron |
| GACGTAAAATCGTATACCTT+TGG | 0.411964 | 7.4:+52275556 | None:intergenic |
| AAAGGCTTACAAGGTTTCCT+TGG | 0.416023 | 7.4:+52276655 | None:intergenic |
| CAATGAGTGATGGCAAGATA+TGG | 0.428994 | 7.4:-52275909 | MS.gene043693:CDS |
| AATCTTTGGAAAGAGTGCTT+TGG | 0.429279 | 7.4:-52275788 | MS.gene043693:CDS |
| GATGATGCCAAGAAAGTTTG+TGG | 0.433802 | 7.4:-52276007 | MS.gene043693:CDS |
| AGATATGGTTTGAGAAGGGT+TGG | 0.481735 | 7.4:-52275894 | MS.gene043693:CDS |
| AGGTTTATTTCCTTGACCAT+TGG | 0.507461 | 7.4:+52275723 | None:intergenic |
| ATTGTAGAGCAGCTCAAAAG+AGG | 0.511221 | 7.4:-52275687 | MS.gene043693:CDS |
| CAAGGAAATAAACCTCCAAA+TGG | 0.511352 | 7.4:-52275715 | MS.gene043693:CDS |
| TTAAATTTGGCAATGAGTGA+TGG | 0.512239 | 7.4:-52275919 | MS.gene043693:CDS |
| TTACAAGGTTTCCTTGGAGA+AGG | 0.514232 | 7.4:+52276661 | None:intergenic |
| TTTGCAGAGCATCACTCTCT+AGG | 0.540785 | 7.4:-52275865 | MS.gene043693:CDS |
| TGGCAAGATATGGTTTGAGA+AGG | 0.555350 | 7.4:-52275899 | MS.gene043693:CDS |
| TCAAATTGATATTCGTCCAA+AGG | 0.584086 | 7.4:-52275572 | MS.gene043693:CDS |
| ATATGTCTAGAGACTCCAAA+TGG | 0.586498 | 7.4:-52275955 | MS.gene043693:CDS |
| ACATTGTCGATGAAATTCAA+AGG | 0.588513 | 7.4:+52275651 | None:intergenic |
| ATTTGGAAAATCGCAGAAGG+TGG | 0.595133 | 7.4:-52275602 | MS.gene043693:CDS |
| GAGCATCACTCTCTAGGTCA+TGG | 0.595626 | 7.4:-52275859 | MS.gene043693:CDS |
| GGCAAGATATGGTTTGAGAA+GGG | 0.606783 | 7.4:-52275898 | MS.gene043693:CDS |
| GTTACTCAAAACCTTCTCCA+AGG | 0.614774 | 7.4:-52276672 | MS.gene043693:CDS |
| AAAATTTGGAAAATCGCAGA+AGG | 0.630701 | 7.4:-52275605 | MS.gene043693:CDS |
| ACGTCTCCGGCATAAATGCA+AGG | 0.631181 | 7.4:-52277181 | None:intergenic |
| TTGTCGATGAAATTCAAAGG+AGG | 0.673392 | 7.4:+52275654 | None:intergenic |
| CATGGCTAGTGAAATTGCTG+AGG | 0.726199 | 7.4:-52276724 | MS.gene043693:CDS |
| TCTCCGGCATAAATGCAAGG+AGG | 0.763982 | 7.4:-52277178 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATCATTCATATTAATA+TGG | - | chr7.4:52276640-52276659 | MS.gene043693:intron | 10.0% |
| !!! | ATATTATTTTACATTACTTT+AGG | + | chr7.4:52276616-52276635 | None:intergenic | 10.0% |
| !!! | TTAAAAAAAGCATAAAAATA+AGG | + | chr7.4:52276337-52276356 | None:intergenic | 10.0% |
| !!! | AGATTTTATGCTTTTATATT+AGG | - | chr7.4:52275932-52275951 | MS.gene043693:CDS | 15.0% |
| !! | ATTCAATTGTTCTGTAATTT+AGG | + | chr7.4:52276289-52276308 | None:intergenic | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | chr7.4:52276753-52276772 | MS.gene043693:intron | 20.0% |
| !!! | GTTGATAATAAAAAGATGTA+CGG | - | chr7.4:52275669-52275688 | MS.gene043693:CDS | 20.0% |
| ! | AAAGATTTGTACCTCAAATT+TGG | + | chr7.4:52276884-52276903 | None:intergenic | 25.0% |
| ! | AACATCAACAAAGAATCTAA+AGG | + | chr7.4:52276051-52276070 | None:intergenic | 25.0% |
| ! | AGAAAGTTTGTGGAAAAATA+TGG | - | chr7.4:52276688-52276707 | MS.gene043693:CDS | 25.0% |
| ! | ATGGGACAAATTGAATAAAT+TGG | + | chr7.4:52276557-52276576 | None:intergenic | 25.0% |
| ! | GAATATAAAAAGTTCTCCAA+TGG | - | chr7.4:52276946-52276965 | MS.gene043693:intron | 25.0% |
| ! | TAACTATGATCTTGAAAAAG+TGG | + | chr7.4:52275997-52276016 | None:intergenic | 25.0% |
| ! | TGAAAAAACTTCCAAATTTG+AGG | - | chr7.4:52276870-52276889 | MS.gene043693:intron | 25.0% |
| ! | TTTATTCAATTTGTCCCATT+TGG | - | chr7.4:52276558-52276577 | MS.gene043693:intron | 25.0% |
| ! | TTTCCATATTCCATGTTAAT+GGG | + | chr7.4:52275852-52275871 | None:intergenic | 25.0% |
| ! | TTTGTGGAAAAATATGGAAA+AGG | - | chr7.4:52276694-52276713 | MS.gene043693:CDS | 25.0% |
| !! | AAATTTGAGGTACAAATCTT+TGG | - | chr7.4:52276883-52276902 | MS.gene043693:intron | 25.0% |
| !! | CGATTACTTGTTAAAAACTT+GGG | - | chr7.4:52276484-52276503 | MS.gene043693:intron | 25.0% |
| !! | TACATTACTTTAGGAAATAC+TGG | + | chr7.4:52276607-52276626 | None:intergenic | 25.0% |
| !! | TATTTTTCCACAAACTTTCT+TGG | + | chr7.4:52276688-52276707 | None:intergenic | 25.0% |
| !! | TCGATTACTTGTTAAAAACT+TGG | - | chr7.4:52276483-52276502 | MS.gene043693:intron | 25.0% |
| !! | TTTTATATTAGGCAAGATCA+TGG | - | chr7.4:52275943-52275962 | MS.gene043693:CDS | 25.0% |
| !!! | TTTTAAGAACGTTTCTCTTT+AGG | - | chr7.4:52276351-52276370 | MS.gene043693:intron | 25.0% |
| AAAAAGTAAACCGCATATCA+CGG | + | chr7.4:52275590-52275609 | None:intergenic | 30.0% | |
| AAAATTTGGAAAATCGCAGA+AGG | - | chr7.4:52277080-52277099 | MS.gene043693:intron | 30.0% | |
| AAAGAATCTAAAGGCTTACA+AGG | + | chr7.4:52276042-52276061 | None:intergenic | 30.0% | |
| AAGAAACCTAAATACACATC+AGG | + | chr7.4:52276447-52276466 | None:intergenic | 30.0% | |
| ACATTGTCGATGAAATTCAA+AGG | + | chr7.4:52277037-52277056 | None:intergenic | 30.0% | |
| AGCAGTAGTTGTGTAAAATT+TGG | - | chr7.4:52277066-52277085 | MS.gene043693:intron | 30.0% | |
| ATGATCTTGAAAAAGTGGAT+TGG | + | chr7.4:52275992-52276011 | None:intergenic | 30.0% | |
| CATATCTAAAAAGCAGAAGA+TGG | + | chr7.4:52276852-52276871 | None:intergenic | 30.0% | |
| CTTTCCATATTCCATGTTAA+TGG | + | chr7.4:52275853-52275872 | None:intergenic | 30.0% | |
| TAACTACCTGATGTGTATTT+AGG | - | chr7.4:52276438-52276457 | MS.gene043693:intron | 30.0% | |
| TACCAGATTATGTTTATTCC+AGG | + | chr7.4:52276416-52276435 | None:intergenic | 30.0% | |
| TATCAACAATGCTACATGTA+GGG | + | chr7.4:52275656-52275675 | None:intergenic | 30.0% | |
| TCAAATTGATATTCGTCCAA+AGG | - | chr7.4:52277113-52277132 | MS.gene043693:intron | 30.0% | |
| TCCAGGAGTTAATTGTATTA+GGG | + | chr7.4:52276399-52276418 | None:intergenic | 30.0% | |
| TTAAATTTGGCAATGAGTGA+TGG | - | chr7.4:52276766-52276785 | MS.gene043693:intron | 30.0% | |
| TTATCAACAATGCTACATGT+AGG | + | chr7.4:52275657-52275676 | None:intergenic | 30.0% | |
| TTCCAGGAGTTAATTGTATT+AGG | + | chr7.4:52276400-52276419 | None:intergenic | 30.0% | |
| TTTCATCGACAATGTGAAAT+TGG | - | chr7.4:52277042-52277061 | MS.gene043693:intron | 30.0% | |
| ! | AACAATTGAATCATTTTCGC+CGG | - | chr7.4:52276298-52276317 | MS.gene043693:intron | 30.0% |
| ! | AATTTCCATTTTGCACCATT+TGG | + | chr7.4:52276748-52276767 | None:intergenic | 30.0% |
| ! | TAAAACAGAGCTGTCAATTT+TGG | - | chr7.4:52276242-52276261 | MS.gene043693:intron | 30.0% |
| !! | TCAATTTTGGTCAAACCTAA+TGG | - | chr7.4:52276255-52276274 | MS.gene043693:intron | 30.0% |
| AAAAAGTTCTCCAATGGTCA+AGG | - | chr7.4:52276952-52276971 | MS.gene043693:intron | 35.0% | |
| AACCAATCTTCCCATTAACA+TGG | - | chr7.4:52275839-52275858 | MS.gene043693:CDS | 35.0% | |
| AATGAAGTTTAGATGCCAAG+AGG | + | chr7.4:52275892-52275911 | None:intergenic | 35.0% | |
| ACAACACTACTGAAATTTCC+CGG | - | chr7.4:52275620-52275639 | MS.gene043693:CDS | 35.0% | |
| AGAAAAGAATAGAGAGGTTC+AGG | + | chr7.4:52276166-52276185 | None:intergenic | 35.0% | |
| AGGTTTATTTCCTTGACCAT+TGG | + | chr7.4:52276965-52276984 | None:intergenic | 35.0% | |
| ATATGTCTAGAGACTCCAAA+TGG | - | chr7.4:52276730-52276749 | MS.gene043693:CDS | 35.0% | |
| CAAGGAAATAAACCTCCAAA+TGG | - | chr7.4:52276970-52276989 | MS.gene043693:intron | 35.0% | |
| CAGGAGTTAATTGTATTAGG+GGG | + | chr7.4:52276397-52276416 | None:intergenic | 35.0% | |
| CCAGGAGTTAATTGTATTAG+GGG | + | chr7.4:52276398-52276417 | None:intergenic | 35.0% | |
| CCTGTTAGAAAAGAATAGAG+AGG | + | chr7.4:52276172-52276191 | None:intergenic | 35.0% | |
| CGTAGTTCAATTATTCCTCT+TGG | - | chr7.4:52275874-52275893 | MS.gene043693:CDS | 35.0% | |
| CTCCTGGAATAAACATAATC+TGG | - | chr7.4:52276411-52276430 | MS.gene043693:intron | 35.0% | |
| CTTCCCATTAACATGGAATA+TGG | - | chr7.4:52275846-52275865 | MS.gene043693:CDS | 35.0% | |
| GACGTAAAATCGTATACCTT+TGG | + | chr7.4:52277132-52277151 | None:intergenic | 35.0% | |
| GGATATATAGCAAAGCTCTT+TGG | - | chr7.4:52275528-52275547 | MS.gene043693:CDS | 35.0% | |
| GGTGAAAATCGACTAATTCT+TGG | - | chr7.4:52275549-52275568 | MS.gene043693:CDS | 35.0% | |
| TTCCATGTTAATGGGAAGAT+TGG | + | chr7.4:52275844-52275863 | None:intergenic | 35.0% | |
| TTCTACTTGATCGAATCTCA+AGG | + | chr7.4:52275776-52275795 | None:intergenic | 35.0% | |
| TTGTCGATGAAATTCAAAGG+AGG | + | chr7.4:52277034-52277053 | None:intergenic | 35.0% | |
| ! | CCTCTCTATTCTTTTCTAAC+AGG | - | chr7.4:52276169-52276188 | MS.gene043693:intron | 35.0% |
| ! | CTACAATTTTCACCATTTGG+AGG | + | chr7.4:52276985-52277004 | None:intergenic | 35.0% |
| ! | GCTCTACAATTTTCACCATT+TGG | + | chr7.4:52276988-52277007 | None:intergenic | 35.0% |
| ! | GTCTCTAGACATATAGCTTT+TGG | + | chr7.4:52276724-52276743 | None:intergenic | 35.0% |
| !! | AATCTTTGGAAAGAGTGCTT+TGG | - | chr7.4:52276897-52276916 | MS.gene043693:intron | 35.0% |
| !! | ATGTAGGGAATTTGTTTTCC+GGG | + | chr7.4:52275641-52275660 | None:intergenic | 35.0% |
| !! | CATGTAGGGAATTTGTTTTC+CGG | + | chr7.4:52275642-52275661 | None:intergenic | 35.0% |
| !! | TGGTTTGCTTGCTCAAAAAA+AGG | + | chr7.4:52275824-52275843 | None:intergenic | 35.0% |
| AAAGGCTTACAAGGTTTCCT+TGG | + | chr7.4:52276033-52276052 | None:intergenic | 40.0% | |
| AATTTGTCCCATTTGGCTAG+GGG | - | chr7.4:52276565-52276584 | MS.gene043693:intron | 40.0% | |
| AGAATAGAGAGGTTCAGGTA+AGG | + | chr7.4:52276161-52276180 | None:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | chr7.4:52276740-52276759 | MS.gene043693:intron | 40.0% | |
| AGATATGGTTTGAGAAGGGT+TGG | - | chr7.4:52276791-52276810 | MS.gene043693:intron | 40.0% | |
| AGCCTAAAACACACCAGTTT+GGG | + | chr7.4:52276520-52276539 | None:intergenic | 40.0% | |
| ATTGTAGAGCAGCTCAAAAG+AGG | - | chr7.4:52276998-52277017 | MS.gene043693:intron | 40.0% | |
| ATTTGGAAAATCGCAGAAGG+TGG | - | chr7.4:52277083-52277102 | MS.gene043693:intron | 40.0% | |
| CAATGAGTGATGGCAAGATA+TGG | - | chr7.4:52276776-52276795 | MS.gene043693:intron | 40.0% | |
| CAATTTGTCCCATTTGGCTA+GGG | - | chr7.4:52276564-52276583 | MS.gene043693:intron | 40.0% | |
| CCCCTAATACAATTAACTCC+TGG | - | chr7.4:52276395-52276414 | MS.gene043693:intron | 40.0% | |
| GATGATGCCAAGAAAGTTTG+TGG | - | chr7.4:52276678-52276697 | MS.gene043693:CDS | 40.0% | |
| GCCAAAAAAACCGTGATATG+CGG | - | chr7.4:52275577-52275596 | MS.gene043693:CDS | 40.0% | |
| GGCAAGATATGGTTTGAGAA+GGG | - | chr7.4:52276787-52276806 | MS.gene043693:intron | 40.0% | |
| GTTACTCAAAACCTTCTCCA+AGG | - | chr7.4:52276013-52276032 | MS.gene043693:intron | 40.0% | |
| TACGTCTTCTTCATTGTGTC+AGG | - | chr7.4:52277146-52277165 | MS.gene043693:intron | 40.0% | |
| TAGCCTAAAACACACCAGTT+TGG | + | chr7.4:52276521-52276540 | None:intergenic | 40.0% | |
| TCAATTTGTCCCATTTGGCT+AGG | - | chr7.4:52276563-52276582 | MS.gene043693:intron | 40.0% | |
| TGGCAAGATATGGTTTGAGA+AGG | - | chr7.4:52276786-52276805 | MS.gene043693:intron | 40.0% | |
| TTACAAGGTTTCCTTGGAGA+AGG | + | chr7.4:52276027-52276046 | None:intergenic | 40.0% | |
| ! | AAAACACACCAGTTTGGGTT+TGG | + | chr7.4:52276515-52276534 | None:intergenic | 40.0% |
| ! | AACCCAAACTGGTGTGTTTT+AGG | - | chr7.4:52276515-52276534 | MS.gene043693:intron | 40.0% |
| ! | ATTGAATCATTTTCGCCGGT+TGG | - | chr7.4:52276302-52276321 | MS.gene043693:intron | 40.0% |
| ! | ATTTAGGAGTGCAGTCCATT+AGG | + | chr7.4:52276273-52276292 | None:intergenic | 40.0% |
| !!! | ACCGCATATCACGGTTTTTT+TGG | + | chr7.4:52275581-52275600 | None:intergenic | 40.0% |
| ACAAACTCCCCTAGCCAAAT+GGG | + | chr7.4:52276575-52276594 | None:intergenic | 45.0% | |
| AGGCCCCACAAATATCTCTA+AGG | - | chr7.4:52276371-52276390 | MS.gene043693:intron | 45.0% | |
| CATGGCTAGTGAAATTGCTG+AGG | - | chr7.4:52275961-52275980 | MS.gene043693:CDS | 45.0% | |
| GGGCCTTAGAGATATTTGTG+GGG | + | chr7.4:52276377-52276396 | None:intergenic | 45.0% | |
| GGGGCCTTAGAGATATTTGT+GGG | + | chr7.4:52276378-52276397 | None:intergenic | 45.0% | |
| ! | TTTGCAGAGCATCACTCTCT+AGG | - | chr7.4:52276820-52276839 | MS.gene043693:intron | 45.0% |
| ATAAGGCCGAGTGAACCAAC+CGG | + | chr7.4:52276320-52276339 | None:intergenic | 50.0% | |
| CACAAACTCCCCTAGCCAAA+TGG | + | chr7.4:52276576-52276595 | None:intergenic | 50.0% | |
| GAGCATCACTCTCTAGGTCA+TGG | - | chr7.4:52276826-52276845 | MS.gene043693:intron | 50.0% | |
| GATCGAATCTCAAGGCTTCG+TGG | + | chr7.4:52275768-52275787 | None:intergenic | 50.0% | |
| GGGGGCCTTAGAGATATTTG+TGG | + | chr7.4:52276379-52276398 | None:intergenic | 50.0% | |
| TTTGGCTAGGGGAGTTTGTG+TGG | - | chr7.4:52276576-52276595 | MS.gene043693:intron | 50.0% | |
| !! | TTTTCGCCGGTTGGTTCACT+CGG | - | chr7.4:52276311-52276330 | MS.gene043693:intron | 50.0% |
| GGGCTTAGCCAAACCCAAAC+TGG | - | chr7.4:52276504-52276523 | MS.gene043693:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52275519 | 52277188 | 52275519 | ID=MS.gene043693 |
| chr7.4 | mRNA | 52275519 | 52277188 | 52275519 | ID=MS.gene043693.t1;Parent=MS.gene043693 |
| chr7.4 | exon | 52277158 | 52277188 | 52277158 | ID=MS.gene043693.t1.exon1;Parent=MS.gene043693.t1 |
| chr7.4 | CDS | 52277158 | 52277188 | 52277158 | ID=cds.MS.gene043693.t1;Parent=MS.gene043693.t1 |
| chr7.4 | exon | 52276665 | 52276753 | 52276665 | ID=MS.gene043693.t1.exon2;Parent=MS.gene043693.t1 |
| chr7.4 | CDS | 52276665 | 52276753 | 52276665 | ID=cds.MS.gene043693.t1;Parent=MS.gene043693.t1 |
| chr7.4 | exon | 52275519 | 52276028 | 52275519 | ID=MS.gene043693.t1.exon3;Parent=MS.gene043693.t1 |
| chr7.4 | CDS | 52275519 | 52276028 | 52275519 | ID=cds.MS.gene043693.t1;Parent=MS.gene043693.t1 |
| Gene Sequence |
| Protein sequence |
