Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043701.t1 | XP_003622663.1 | 85 | 306 | 35 | 1 | 1 | 295 | 1 | 306 | 5.50E-144 | 520.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043701.t1 | Q8L3W1 | 27.3 | 330 | 163 | 6 | 13 | 277 | 6 | 323 | 5.8e-25 | 116.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043701.t1 | G7KVV4 | 85.0 | 306 | 35 | 1 | 1 | 295 | 1 | 306 | 4.0e-144 | 520.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043701.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043701.t1 | MTR_7g050560 | 84.967 | 306 | 35 | 1 | 1 | 295 | 1 | 306 | 0.0 | 528 |
| MS.gene043701.t1 | MTR_7g050590 | 71.717 | 297 | 56 | 5 | 28 | 296 | 1 | 297 | 4.10e-149 | 420 |
| MS.gene043701.t1 | MTR_3g098790 | 62.229 | 323 | 88 | 6 | 1 | 296 | 1 | 316 | 2.57e-132 | 379 |
| MS.gene043701.t1 | MTR_7g050710 | 62.154 | 325 | 93 | 6 | 1 | 296 | 1 | 324 | 1.20e-131 | 377 |
| MS.gene043701.t1 | MTR_7g050580 | 62.264 | 318 | 79 | 6 | 1 | 292 | 1 | 303 | 3.74e-131 | 375 |
| MS.gene043701.t1 | MTR_7g050720 | 58.586 | 297 | 96 | 6 | 7 | 276 | 4 | 300 | 1.54e-112 | 328 |
| MS.gene043701.t1 | MTR_8g103940 | 35.354 | 297 | 157 | 6 | 11 | 282 | 37 | 323 | 2.57e-50 | 173 |
| MS.gene043701.t1 | MTR_1g035460 | 35.563 | 284 | 137 | 10 | 28 | 276 | 1 | 273 | 2.44e-45 | 158 |
| MS.gene043701.t1 | MTR_1g108780 | 33.692 | 279 | 141 | 7 | 29 | 277 | 13 | 277 | 5.46e-45 | 158 |
| MS.gene043701.t1 | MTR_7g050640 | 64.602 | 113 | 40 | 0 | 1 | 113 | 1 | 113 | 1.56e-43 | 145 |
| MS.gene043701.t1 | MTR_3g061370 | 33.813 | 278 | 158 | 9 | 11 | 277 | 7 | 269 | 2.19e-36 | 131 |
| MS.gene043701.t1 | MTR_3g061350 | 33.217 | 286 | 168 | 8 | 1 | 277 | 1 | 272 | 3.78e-36 | 131 |
| MS.gene043701.t1 | MTR_5g044670 | 29.167 | 288 | 166 | 8 | 13 | 276 | 16 | 289 | 9.94e-35 | 128 |
| MS.gene043701.t1 | MTR_3g061320 | 32.646 | 291 | 149 | 10 | 10 | 281 | 9 | 271 | 6.19e-34 | 125 |
| MS.gene043701.t1 | MTR_3g061310 | 30.142 | 282 | 172 | 8 | 10 | 280 | 9 | 276 | 9.05e-31 | 117 |
| MS.gene043701.t1 | MTR_3g061340 | 32.168 | 286 | 142 | 11 | 10 | 276 | 9 | 261 | 1.50e-30 | 116 |
| MS.gene043701.t1 | MTR_1g035640 | 34.409 | 279 | 157 | 11 | 12 | 280 | 8 | 270 | 1.60e-30 | 119 |
| MS.gene043701.t1 | MTR_3g061330 | 33.019 | 212 | 103 | 6 | 10 | 201 | 9 | 201 | 1.83e-29 | 112 |
| MS.gene043701.t1 | MTR_1g035620 | 29.682 | 283 | 156 | 8 | 10 | 274 | 6 | 263 | 7.26e-29 | 114 |
| MS.gene043701.t1 | MTR_5g070440 | 27.839 | 273 | 151 | 7 | 13 | 277 | 21 | 255 | 3.49e-28 | 110 |
| MS.gene043701.t1 | MTR_1g050845 | 30.037 | 273 | 156 | 7 | 10 | 274 | 6 | 251 | 4.73e-28 | 114 |
| MS.gene043701.t1 | MTR_6g043890 | 27.667 | 300 | 184 | 7 | 1 | 276 | 1 | 291 | 1.15e-27 | 110 |
| MS.gene043701.t1 | MTR_1g035570 | 31.930 | 285 | 161 | 10 | 12 | 279 | 8 | 276 | 2.11e-27 | 110 |
| MS.gene043701.t1 | MTR_3g061290 | 50.000 | 102 | 49 | 1 | 10 | 111 | 9 | 108 | 2.29e-27 | 105 |
| MS.gene043701.t1 | MTR_3g005480 | 27.737 | 274 | 142 | 8 | 13 | 277 | 21 | 247 | 5.19e-27 | 106 |
| MS.gene043701.t1 | MTR_6g061070 | 28.939 | 311 | 174 | 9 | 7 | 280 | 12 | 312 | 1.10e-26 | 108 |
| MS.gene043701.t1 | MTR_4g119990 | 29.010 | 293 | 173 | 9 | 11 | 276 | 13 | 297 | 1.97e-25 | 104 |
| MS.gene043701.t1 | MTR_3g005490 | 26.642 | 274 | 144 | 7 | 13 | 277 | 21 | 246 | 4.71e-25 | 101 |
| MS.gene043701.t1 | MTR_3g005460 | 26.619 | 278 | 160 | 8 | 11 | 277 | 260 | 504 | 5.36e-24 | 101 |
| MS.gene043701.t1 | MTR_3g005460 | 24.906 | 265 | 146 | 7 | 13 | 277 | 25 | 236 | 7.45e-19 | 86.7 |
| MS.gene043701.t1 | MTR_3g005420 | 28.090 | 267 | 158 | 6 | 13 | 277 | 289 | 523 | 3.14e-23 | 99.8 |
| MS.gene043701.t1 | MTR_3g005420 | 24.042 | 287 | 162 | 7 | 13 | 295 | 40 | 274 | 3.64e-15 | 75.9 |
| MS.gene043701.t1 | MTR_1g021270 | 26.101 | 318 | 160 | 8 | 27 | 277 | 29 | 338 | 7.55e-22 | 95.9 |
| MS.gene043701.t1 | MTR_4g068320 | 40.566 | 106 | 61 | 1 | 12 | 115 | 5 | 110 | 2.22e-21 | 93.6 |
| MS.gene043701.t1 | MTR_1g021360 | 27.985 | 268 | 176 | 8 | 24 | 277 | 193 | 457 | 4.85e-21 | 93.2 |
| MS.gene043701.t1 | MTR_3g061220 | 43.137 | 102 | 43 | 2 | 10 | 111 | 9 | 95 | 7.81e-21 | 86.3 |
| MS.gene043701.t1 | MTR_1g035480 | 37.589 | 141 | 76 | 3 | 9 | 149 | 13 | 141 | 1.30e-20 | 87.4 |
| MS.gene043701.t1 | MTR_1g035650 | 31.797 | 217 | 109 | 6 | 10 | 206 | 6 | 203 | 1.25e-19 | 85.5 |
| MS.gene043701.t1 | MTR_1g034240 | 39.000 | 100 | 61 | 0 | 12 | 111 | 6 | 105 | 5.19e-19 | 87.0 |
| MS.gene043701.t1 | MTR_1g021410 | 23.397 | 312 | 189 | 5 | 14 | 277 | 23 | 332 | 9.85e-19 | 85.5 |
| MS.gene043701.t1 | MTR_1g035520 | 27.723 | 303 | 158 | 11 | 28 | 282 | 87 | 376 | 2.28e-18 | 84.7 |
| MS.gene043701.t1 | MTR_3g005495 | 28.195 | 266 | 143 | 7 | 13 | 277 | 243 | 461 | 2.90e-18 | 85.1 |
| MS.gene043701.t1 | MTR_3g005495 | 37.209 | 86 | 54 | 0 | 29 | 114 | 29 | 114 | 1.16e-16 | 80.1 |
| MS.gene043701.t1 | MTR_1g035500 | 34.194 | 155 | 88 | 4 | 7 | 161 | 19 | 159 | 5.55e-17 | 77.8 |
| MS.gene043701.t1 | MTR_1g033740 | 34.043 | 141 | 80 | 3 | 9 | 149 | 18 | 145 | 1.07e-16 | 77.0 |
| MS.gene043701.t1 | MTR_3g005440 | 30.508 | 118 | 77 | 1 | 27 | 139 | 34 | 151 | 4.95e-16 | 78.2 |
| MS.gene043701.t1 | MTR_3g005440 | 32.500 | 120 | 80 | 1 | 7 | 125 | 235 | 354 | 4.38e-14 | 72.4 |
| MS.gene043701.t1 | MTR_1g035440 | 40.000 | 105 | 62 | 1 | 11 | 114 | 13 | 117 | 2.78e-15 | 74.3 |
| MS.gene043701.t1 | MTR_3g005420 | 24.042 | 287 | 162 | 7 | 13 | 295 | 21 | 255 | 3.82e-15 | 75.9 |
| MS.gene043701.t1 | MTR_1g035470 | 37.692 | 130 | 66 | 5 | 28 | 157 | 1 | 115 | 2.00e-14 | 69.3 |
| MS.gene043701.t1 | MTR_1g035510 | 36.154 | 130 | 67 | 4 | 28 | 157 | 1 | 114 | 7.16e-14 | 69.7 |
| MS.gene043701.t1 | MTR_1g034210 | 35.000 | 100 | 63 | 1 | 12 | 111 | 6 | 103 | 9.34e-14 | 70.9 |
| MS.gene043701.t1 | MTR_1g034210 | 35.000 | 100 | 63 | 1 | 12 | 111 | 6 | 103 | 1.27e-13 | 70.9 |
| MS.gene043701.t1 | MTR_1g021350 | 23.826 | 298 | 184 | 9 | 14 | 277 | 22 | 310 | 1.54e-12 | 67.4 |
| MS.gene043701.t1 | MTR_1g021380 | 29.213 | 178 | 96 | 4 | 12 | 184 | 15 | 167 | 1.19e-11 | 64.7 |
| MS.gene043701.t1 | MTR_1g021320 | 34.615 | 130 | 76 | 4 | 154 | 277 | 463 | 589 | 2.37e-11 | 64.7 |
| MS.gene043701.t1 | MTR_1g021320 | 24.581 | 179 | 114 | 2 | 26 | 183 | 195 | 373 | 6.96e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043701.t1 | AT4G01580 | 44.231 | 104 | 58 | 0 | 13 | 116 | 30 | 133 | 5.63e-24 | 96.7 |
| MS.gene043701.t1 | AT3G18960 | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 1.50e-22 | 92.8 |
| MS.gene043701.t1 | AT3G18960 | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 1.66e-22 | 93.2 |
| MS.gene043701.t1 | AT1G49475 | 44.118 | 102 | 56 | 1 | 13 | 114 | 34 | 134 | 2.34e-22 | 92.4 |
| MS.gene043701.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 2.85e-21 | 92.4 |
| MS.gene043701.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 4.78e-21 | 92.4 |
| MS.gene043701.t1 | AT3G18960 | 46.591 | 88 | 47 | 0 | 29 | 116 | 9 | 96 | 5.22e-19 | 82.8 |
| MS.gene043701.t1 | AT4G33280 | 26.829 | 287 | 176 | 12 | 14 | 275 | 25 | 302 | 1.04e-16 | 79.7 |
Find 52 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTAAATGAAGGAATT+TGG | 0.170862 | 7.4:+52531405 | MS.gene043701:CDS |
| GATCAAAATGTGGTCCTTTA+AGG | 0.170896 | 7.4:-52531454 | None:intergenic |
| TATTTCTCCACAAACTTTCT+TGG | 0.217927 | 7.4:-52530364 | None:intergenic |
| TGGAAAATGGAAATTAAATT+TGG | 0.234349 | 7.4:+52530432 | MS.gene043701:CDS |
| AGACTCCAAATGGTGGAAAA+TGG | 0.283126 | 7.4:+52530419 | MS.gene043701:CDS |
| GAATGGATAATTTATCTCTA+AGG | 0.305393 | 7.4:-52530593 | None:intergenic |
| CCAAAGAGTTGCAGCTAAAA+AGG | 0.311285 | 7.4:+52530615 | MS.gene043701:CDS |
| CGAATCAGGATGACCCTTAA+AGG | 0.312800 | 7.4:+52531440 | MS.gene043701:CDS |
| AGAAAGTTTGTGGAGAAATA+TGG | 0.321466 | 7.4:+52530367 | MS.gene043701:CDS |
| CGTGGAATACCGATTTCTTA+TGG | 0.327506 | 7.4:+52530941 | MS.gene043701:CDS |
| TTCCATCAACCACGTGAAAT+AGG | 0.327923 | 7.4:+52530679 | MS.gene043701:CDS |
| ATCCTGATTCGGTACTTTGC+AGG | 0.342698 | 7.4:-52531428 | None:intergenic |
| TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7.4:+52531358 | MS.gene043701:CDS |
| TGATGCAAAGTTGCTACCTT+TGG | 0.410086 | 7.4:-52530733 | None:intergenic |
| TTCCTATTTCACGTGGTTGA+TGG | 0.411563 | 7.4:-52530681 | None:intergenic |
| CAGAATATACCACGTATGTT+TGG | 0.412403 | 7.4:+52531338 | MS.gene043701:intron |
| AGGCAAAATATGGTTAGAAA+AGG | 0.421262 | 7.4:+52530465 | MS.gene043701:CDS |
| GTTTATTTGTTGTTAAATGA+AGG | 0.421453 | 7.4:+52531398 | MS.gene043701:CDS |
| GGCCTGCAAAGTACCGAATC+AGG | 0.422243 | 7.4:+52531426 | MS.gene043701:CDS |
| CTTCACCTCAAGAGTTTCAC+TGG | 0.434275 | 7.4:-52529432 | None:intergenic |
| ATCAAAATGTGGTCCTTTAA+GGG | 0.439719 | 7.4:-52531453 | None:intergenic |
| TGCAACTTACCATAAGAAAT+CGG | 0.439757 | 7.4:-52530950 | None:intergenic |
| GATGATGCCAAGAAAGTTTG+TGG | 0.440968 | 7.4:+52530357 | MS.gene043701:intron |
| CTTTAAGGGTCATCCTGATT+CGG | 0.450982 | 7.4:-52531439 | None:intergenic |
| GGCAAAATATGGTTAGAAAA+GGG | 0.459094 | 7.4:+52530466 | MS.gene043701:CDS |
| TATATTTGAAAAGCAGAAGA+TGG | 0.475849 | 7.4:-52530528 | None:intergenic |
| ATATATCTAAAGACTCCAAA+TGG | 0.494837 | 7.4:+52530409 | MS.gene043701:CDS |
| AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7.4:+52531503 | MS.gene043701:CDS |
| TTAGCTGCAACTCTTTGGAA+TGG | 0.508092 | 7.4:-52530610 | None:intergenic |
| AAATATGGTTAGAAAAGGGT+TGG | 0.518334 | 7.4:+52530470 | MS.gene043701:CDS |
| ATTGTTCTACATCTCAAAGT+AGG | 0.533376 | 7.4:+52531579 | MS.gene043701:CDS |
| CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7.4:-52530909 | None:intergenic |
| TGATCTCTTAACTGGATGGA+AGG | 0.553548 | 7.4:+52531472 | MS.gene043701:CDS |
| TTTGTGGAGAAATATGGAGG+TGG | 0.574365 | 7.4:+52530373 | MS.gene043701:CDS |
| GAGCATCATTCTCTAGCTCA+TGG | 0.575529 | 7.4:+52530505 | MS.gene043701:CDS |
| TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7.4:+52531371 | MS.gene043701:CDS |
| CTTGCTCAACATCTTCATGA+AGG | 0.576527 | 7.4:+52529479 | MS.gene043701:CDS |
| CCACGTGAAATAGGAAGCAA+TGG | 0.577300 | 7.4:+52530688 | MS.gene043701:CDS |
| ATTTGAGCTCATCTTTAGAG+AGG | 0.590121 | 7.4:+52531538 | MS.gene043701:CDS |
| CATGGCCAGTGAAACTCTTG+AGG | 0.599284 | 7.4:+52529427 | None:intergenic |
| GTAGCAACTTTGCATCATGC+TGG | 0.604292 | 7.4:+52530739 | MS.gene043701:CDS |
| CCATTGCTTCCTATTTCACG+TGG | 0.606111 | 7.4:-52530688 | None:intergenic |
| TATCTAAAGACTCCAAATGG+TGG | 0.617671 | 7.4:+52530412 | MS.gene043701:CDS |
| TGAAGTTGAGAAATTACCAA+AGG | 0.619935 | 7.4:+52530717 | MS.gene043701:CDS |
| TGGTTGATGGAATTCAAAAG+AGG | 0.624709 | 7.4:-52530668 | None:intergenic |
| TGGATGGAAGGCATTTGCAA+AGG | 0.649340 | 7.4:+52531484 | MS.gene043701:CDS |
| AAGTTTGTGGAGAAATATGG+AGG | 0.658447 | 7.4:+52530370 | MS.gene043701:CDS |
| TGTCATGCGTGCATCATACG+TGG | 0.676375 | 7.4:+52530923 | MS.gene043701:CDS |
| CCAGTTAAGAGATCAAAATG+TGG | 0.685649 | 7.4:-52531464 | None:intergenic |
| TGCACGCATGACAACAACAA+AGG | 0.693553 | 7.4:-52530913 | None:intergenic |
| CATGCTGGCAGAGAGTCCAA+AGG | 0.714363 | 7.4:+52530754 | MS.gene043701:CDS |
| TGTCTATTACCAAACATACG+TGG | 0.737084 | 7.4:-52531347 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATCACATAAATGTTTAT+TGG | + | chr7.4:52531184-52531203 | MS.gene043701:intron | 15.0% |
| !! | TAAGAAAAAAAAGTTCAAAT+TGG | - | chr7.4:52529882-52529901 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATGTCCTACA+TGG | + | chr7.4:52529848-52529867 | MS.gene043701:intron | 20.0% |
| !! | AAGTAATGTAATCATGTTAT+AGG | - | chr7.4:52529597-52529616 | None:intergenic | 20.0% |
| !! | TATTCTGATAAATGTGATTT+AGG | + | chr7.4:52530267-52530286 | MS.gene043701:intron | 20.0% |
| !! | TGGAAAATGGAAATTAAATT+TGG | + | chr7.4:52530432-52530451 | MS.gene043701:CDS | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+AGG | + | chr7.4:52530445-52530464 | MS.gene043701:CDS | 20.0% |
| !!! | AATTACTTAGTTTTCTAATC+AGG | - | chr7.4:52530247-52530266 | None:intergenic | 20.0% |
| !!! | ACAAATTTTTTTCCTCAATA+GGG | + | chr7.4:52530074-52530093 | MS.gene043701:intron | 20.0% |
| !!! | ATGTAAATGCTATTTAACAA+GGG | + | chr7.4:52529996-52530015 | MS.gene043701:intron | 20.0% |
| !!! | ATTATCTTGAAAAAGTTGAT+TGG | - | chr7.4:52529458-52529477 | None:intergenic | 20.0% |
| !!! | GTTTATTTGTTGTTAAATGA+AGG | + | chr7.4:52531398-52531417 | MS.gene043701:CDS | 20.0% |
| !!! | TGTAAATAAAAATTCGAGTT+TGG | + | chr7.4:52530101-52530120 | MS.gene043701:intron | 20.0% |
| ! | AATAAGAGAATCTAAGTCAA+AGG | - | chr7.4:52529517-52529536 | None:intergenic | 25.0% |
| ! | ACAAATATGTCGAAATTGTT+AGG | + | chr7.4:52529739-52529758 | MS.gene043701:intron | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | + | chr7.4:52530409-52530428 | MS.gene043701:CDS | 25.0% |
| ! | GAATGGATAATTTATCTCTA+AGG | - | chr7.4:52530596-52530615 | None:intergenic | 25.0% |
| ! | GTAATTAAGAAAAATGCACA+TGG | + | chr7.4:52530023-52530042 | MS.gene043701:intron | 25.0% |
| ! | TAAAAAGTGAAGGCAAAATA+TGG | + | chr7.4:52530455-52530474 | MS.gene043701:CDS | 25.0% |
| ! | TATATTTGAAAAGCAGAAGA+TGG | - | chr7.4:52530531-52530550 | None:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | - | chr7.4:52530820-52530839 | None:intergenic | 25.0% |
| ! | TGTTGTTAAATGAAGGAATT+TGG | + | chr7.4:52531405-52531424 | MS.gene043701:CDS | 25.0% |
| !! | CATTTGTCTTTTCTTTTGAT+TGG | + | chr7.4:52531315-52531334 | MS.gene043701:intron | 25.0% |
| !! | GATGTAAATGCTATTTAACA+AGG | + | chr7.4:52529995-52530014 | MS.gene043701:intron | 25.0% |
| !! | TATTGTGTTCAAATTTTGCA+GGG | + | chr7.4:52530820-52530839 | MS.gene043701:intron | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | + | chr7.4:52530819-52530838 | MS.gene043701:intron | 25.0% |
| !!! | CAAATTTTTTTCCTCAATAG+GGG | + | chr7.4:52530075-52530094 | MS.gene043701:intron | 25.0% |
| !!! | GACAAATTTTTTTCCTCAAT+AGG | + | chr7.4:52530073-52530092 | MS.gene043701:intron | 25.0% |
| AAACCAGCAAGTAATTAACT+TGG | + | chr7.4:52529920-52529939 | MS.gene043701:intron | 30.0% | |
| AAATATGGTTAGAAAAGGGT+TGG | + | chr7.4:52530470-52530489 | MS.gene043701:CDS | 30.0% | |
| AAGGACAATAACTTGAAAGT+TGG | + | chr7.4:52531503-52531522 | MS.gene043701:CDS | 30.0% | |
| AGAAAAATGCACATGGTAAA+TGG | + | chr7.4:52530030-52530049 | MS.gene043701:intron | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | + | chr7.4:52530367-52530386 | MS.gene043701:CDS | 30.0% | |
| AGGCAAAATATGGTTAGAAA+AGG | + | chr7.4:52530465-52530484 | MS.gene043701:CDS | 30.0% | |
| ATCAAAATGTGGTCCTTTAA+GGG | - | chr7.4:52531456-52531475 | None:intergenic | 30.0% | |
| ATTGTTCTACATCTCAAAGT+AGG | + | chr7.4:52531579-52531598 | MS.gene043701:CDS | 30.0% | |
| CAAGTCCATCATAAAATTAG+TGG | - | chr7.4:52530128-52530147 | None:intergenic | 30.0% | |
| GACTCAATCTTATATACCTT+TGG | - | chr7.4:52530773-52530792 | None:intergenic | 30.0% | |
| GGCAAAATATGGTTAGAAAA+GGG | + | chr7.4:52530466-52530485 | MS.gene043701:CDS | 30.0% | |
| GGCATATGAGCTTATATTTA+GGG | + | chr7.4:52530051-52530070 | MS.gene043701:intron | 30.0% | |
| GTGATTCATGCATACTAATT+TGG | + | chr7.4:52530319-52530338 | MS.gene043701:intron | 30.0% | |
| TAGCATGTATCATGACATAT+TGG | + | chr7.4:52529949-52529968 | MS.gene043701:intron | 30.0% | |
| TATCCAAGTTAATTACTTGC+TGG | - | chr7.4:52529926-52529945 | None:intergenic | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | - | chr7.4:52530367-52530386 | None:intergenic | 30.0% | |
| TCATAAGGCTAGAAATTTAG+TGG | - | chr7.4:52530152-52530171 | None:intergenic | 30.0% | |
| TGAAGTTGAGAAATTACCAA+AGG | + | chr7.4:52530717-52530736 | MS.gene043701:CDS | 30.0% | |
| TGCAACTTACCATAAGAAAT+CGG | - | chr7.4:52530953-52530972 | None:intergenic | 30.0% | |
| TGGCATATGAGCTTATATTT+AGG | + | chr7.4:52530050-52530069 | MS.gene043701:intron | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | + | chr7.4:52531358-52531377 | MS.gene043701:CDS | 30.0% | |
| TTGAGTTAGATTCTTTGTTC+AGG | + | chr7.4:52529550-52529569 | MS.gene043701:intron | 30.0% | |
| ! | AAGTTAATTACTTGCTGGTT+TGG | - | chr7.4:52529921-52529940 | None:intergenic | 30.0% |
| ! | AATTTCCATTTTCCACCATT+TGG | - | chr7.4:52530427-52530446 | None:intergenic | 30.0% |
| ! | ATTTGTTCGTCATAGTTTGT+GGG | + | chr7.4:52529652-52529671 | MS.gene043701:intron | 30.0% |
| ! | TTGGTCCACTAATTTTATGA+TGG | + | chr7.4:52530120-52530139 | MS.gene043701:intron | 30.0% |
| !! | ATTTTGATCTCTTAACTGGA+TGG | + | chr7.4:52531468-52531487 | MS.gene043701:CDS | 30.0% |
| !! | TTCTAGCCTTATGAAACTAT+GGG | + | chr7.4:52530158-52530177 | MS.gene043701:intron | 30.0% |
| !! | TTTCTAGCCTTATGAAACTA+TGG | + | chr7.4:52530157-52530176 | MS.gene043701:intron | 30.0% |
| !! | TTTGATTTGGATAAGAAGAG+AGG | + | chr7.4:52531371-52531390 | MS.gene043701:CDS | 30.0% |
| AAAGAATTTCCCAGCTCAAA+TGG | + | chr7.4:52531134-52531153 | MS.gene043701:intron | 35.0% | |
| AAGAACCAATTGGTATCAAC+GGG | - | chr7.4:52531108-52531127 | None:intergenic | 35.0% | |
| AAGTTTGTGGAGAAATATGG+AGG | + | chr7.4:52530370-52530389 | MS.gene043701:CDS | 35.0% | |
| ACATATTTGTCAGTTGAGCT+AGG | - | chr7.4:52529729-52529748 | None:intergenic | 35.0% | |
| CAAGAACCAATTGGTATCAA+CGG | - | chr7.4:52531109-52531128 | None:intergenic | 35.0% | |
| CAGAATATACCACGTATGTT+TGG | + | chr7.4:52531338-52531357 | MS.gene043701:intron | 35.0% | |
| CCAGTTAAGAGATCAAAATG+TGG | - | chr7.4:52531467-52531486 | None:intergenic | 35.0% | |
| CTTGGACAATTAAGTTAGGT+CGG | + | chr7.4:52530217-52530236 | MS.gene043701:intron | 35.0% | |
| CTTTCTCAACAAGAACCAAT+TGG | - | chr7.4:52531118-52531137 | None:intergenic | 35.0% | |
| GATCAAAATGTGGTCCTTTA+AGG | - | chr7.4:52531457-52531476 | None:intergenic | 35.0% | |
| GGTAAGTTGCAAAGAAAGTT+TGG | + | chr7.4:52530962-52530981 | MS.gene043701:intron | 35.0% | |
| TATCTAAAGACTCCAAATGG+TGG | + | chr7.4:52530412-52530431 | MS.gene043701:CDS | 35.0% | |
| TATTTACAAGTCCCCTATTG+AGG | - | chr7.4:52530089-52530108 | None:intergenic | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | + | chr7.4:52531100-52531119 | MS.gene043701:intron | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | - | chr7.4:52531350-52531369 | None:intergenic | 35.0% | |
| TTGGACAATTAAGTTAGGTC+GGG | + | chr7.4:52530218-52530237 | MS.gene043701:intron | 35.0% | |
| ! | AGCTTTTCTCTTTTGACCAT+TGG | - | chr7.4:52530644-52530663 | None:intergenic | 35.0% |
| ! | ATTTGAGCTCATCTTTAGAG+AGG | + | chr7.4:52531538-52531557 | MS.gene043701:CDS | 35.0% |
| ! | GATTTGTTCGTCATAGTTTG+TGG | + | chr7.4:52529651-52529670 | MS.gene043701:intron | 35.0% |
| !! | CCACATTTTGATCTCTTAAC+TGG | + | chr7.4:52531464-52531483 | MS.gene043701:CDS | 35.0% |
| !! | TGGTTGATGGAATTCAAAAG+AGG | - | chr7.4:52530671-52530690 | None:intergenic | 35.0% |
| !! | TTGGCTTGGACAATTAAGTT+AGG | + | chr7.4:52530213-52530232 | MS.gene043701:intron | 35.0% |
| AATTTCCCAGCTCAAATGGA+GGG | + | chr7.4:52531138-52531157 | MS.gene043701:intron | 40.0% | |
| ACTTAATTGTCCAAGCCAAG+TGG | - | chr7.4:52530212-52530231 | None:intergenic | 40.0% | |
| ATTGGACTACCCAAATGGAA+GGG | + | chr7.4:52529967-52529986 | MS.gene043701:intron | 40.0% | |
| CATAAACTCACACACACAAG+TGG | - | chr7.4:52529801-52529820 | None:intergenic | 40.0% | |
| CCAAAGAGTTGCAGCTAAAA+AGG | + | chr7.4:52530615-52530634 | MS.gene043701:CDS | 40.0% | |
| CTTAATTGTCCAAGCCAAGT+GGG | - | chr7.4:52530211-52530230 | None:intergenic | 40.0% | |
| CTTGCTCAACATCTTCATGA+AGG | + | chr7.4:52529479-52529498 | MS.gene043701:CDS | 40.0% | |
| GACATATTGGACTACCCAAA+TGG | + | chr7.4:52529962-52529981 | MS.gene043701:intron | 40.0% | |
| GATGATGCCAAGAAAGTTTG+TGG | + | chr7.4:52530357-52530376 | MS.gene043701:intron | 40.0% | |
| GTAGCGACATAGATGAGTAA+AGG | - | chr7.4:52529693-52529712 | None:intergenic | 40.0% | |
| TATTGGACTACCCAAATGGA+AGG | + | chr7.4:52529966-52529985 | MS.gene043701:intron | 40.0% | |
| TGATCTCTTAACTGGATGGA+AGG | + | chr7.4:52531472-52531491 | MS.gene043701:CDS | 40.0% | |
| TGATGCAAAGTTGCTACCTT+TGG | - | chr7.4:52530736-52530755 | None:intergenic | 40.0% | |
| TGCAGCCTGTTTACTCAATT+CGG | + | chr7.4:52530185-52530204 | MS.gene043701:intron | 40.0% | |
| TTCCATCAACCACGTGAAAT+AGG | + | chr7.4:52530679-52530698 | MS.gene043701:CDS | 40.0% | |
| TTCCTATTTCACGTGGTTGA+TGG | - | chr7.4:52530684-52530703 | None:intergenic | 40.0% | |
| TTTGTGGAGAAATATGGAGG+TGG | + | chr7.4:52530373-52530392 | MS.gene043701:CDS | 40.0% | |
| ! | AGACTCCAAATGGTGGAAAA+TGG | + | chr7.4:52530419-52530438 | MS.gene043701:CDS | 40.0% |
| ! | CTTTAAGGGTCATCCTGATT+CGG | - | chr7.4:52531442-52531461 | None:intergenic | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+TGG | - | chr7.4:52530613-52530632 | None:intergenic | 40.0% |
| !! | CGTGGAATACCGATTTCTTA+TGG | + | chr7.4:52530941-52530960 | MS.gene043701:CDS | 40.0% |
| !!! | CCTTTTTAGCTGCAACTCTT+TGG | - | chr7.4:52530618-52530637 | None:intergenic | 40.0% |
| AAACTCACACACACAAGTGG+AGG | - | chr7.4:52529798-52529817 | None:intergenic | 45.0% | |
| AATTGGCGATGAAGCCATGT+AGG | - | chr7.4:52529865-52529884 | None:intergenic | 45.0% | |
| ACATCAATCGCCCTTCCATT+TGG | - | chr7.4:52529980-52529999 | None:intergenic | 45.0% | |
| CACCAGCCCATAGTTTCATA+AGG | - | chr7.4:52530167-52530186 | None:intergenic | 45.0% | |
| CATCAATCGCCCTTCCATTT+GGG | - | chr7.4:52529979-52529998 | None:intergenic | 45.0% | |
| CCACGTGAAATAGGAAGCAA+TGG | + | chr7.4:52530688-52530707 | MS.gene043701:CDS | 45.0% | |
| CCATTGCTTCCTATTTCACG+TGG | - | chr7.4:52530691-52530710 | None:intergenic | 45.0% | |
| CGAATCAGGATGACCCTTAA+AGG | + | chr7.4:52531440-52531459 | MS.gene043701:CDS | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | - | chr7.4:52530912-52530931 | None:intergenic | 45.0% | |
| CTTCACCTCAAGAGTTTCAC+TGG | - | chr7.4:52529435-52529454 | None:intergenic | 45.0% | |
| GAATTTCCCAGCTCAAATGG+AGG | + | chr7.4:52531137-52531156 | MS.gene043701:intron | 45.0% | |
| GCAGCTAAAAAGGTCTCCAA+TGG | + | chr7.4:52530625-52530644 | MS.gene043701:CDS | 45.0% | |
| GTAGCAACTTTGCATCATGC+TGG | + | chr7.4:52530739-52530758 | MS.gene043701:CDS | 45.0% | |
| GTCAGTTGAGCTAGGACTTA+TGG | - | chr7.4:52529721-52529740 | None:intergenic | 45.0% | |
| TAAGACCCTCCATTTGAGCT+GGG | - | chr7.4:52531146-52531165 | None:intergenic | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | - | chr7.4:52530916-52530935 | None:intergenic | 45.0% | |
| TTAAGACCCTCCATTTGAGC+TGG | - | chr7.4:52531147-52531166 | None:intergenic | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | + | chr7.4:52530194-52530213 | MS.gene043701:intron | 45.0% | |
| ! | AACTACGTATGCACTGACGA+AGG | + | chr7.4:52530992-52531011 | MS.gene043701:intron | 45.0% |
| ! | AGCCTTATGAAACTATGGGC+TGG | + | chr7.4:52530162-52530181 | MS.gene043701:intron | 45.0% |
| ! | GAGCATCATTCTCTAGCTCA+TGG | + | chr7.4:52530505-52530524 | MS.gene043701:CDS | 45.0% |
| !! | ATCCTGATTCGGTACTTTGC+AGG | - | chr7.4:52531431-52531450 | None:intergenic | 45.0% |
| !! | TGGATGGAAGGCATTTGCAA+AGG | + | chr7.4:52531484-52531503 | MS.gene043701:CDS | 45.0% |
| GTGGGCCGAATTGAGTAAAC+AGG | - | chr7.4:52530193-52530212 | None:intergenic | 50.0% | |
| GTTAGGCCAGACGTCATGAT+CGG | + | chr7.4:52529756-52529775 | MS.gene043701:intron | 50.0% | |
| TGTCATGCGTGCATCATACG+TGG | + | chr7.4:52530923-52530942 | MS.gene043701:CDS | 50.0% | |
| TTAGGCCAGACGTCATGATC+GGG | + | chr7.4:52529757-52529776 | MS.gene043701:intron | 50.0% | |
| CATGATCGGGGTTCGAACCT+CGG | + | chr7.4:52529770-52529789 | MS.gene043701:intron | 55.0% | |
| CATGCTGGCAGAGAGTCCAA+AGG | + | chr7.4:52530754-52530773 | MS.gene043701:CDS | 55.0% | |
| TAGGCCAGACGTCATGATCG+GGG | + | chr7.4:52529758-52529777 | MS.gene043701:intron | 55.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | + | chr7.4:52530199-52530218 | MS.gene043701:intron | 55.0% | |
| !! | GGCCTGCAAAGTACCGAATC+AGG | + | chr7.4:52531426-52531445 | MS.gene043701:CDS | 55.0% |
| CGAACCCCGATCATGACGTC+TGG | - | chr7.4:52529765-52529784 | None:intergenic | 60.0% | |
| !! | ACACACAAGTGGAGGTGCCG+AGG | - | chr7.4:52529790-52529809 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52529428 | 52531610 | 52529428 | ID=MS.gene043701 |
| chr7.4 | mRNA | 52529428 | 52531610 | 52529428 | ID=MS.gene043701.t1;Parent=MS.gene043701 |
| chr7.4 | exon | 52529428 | 52529508 | 52529428 | ID=MS.gene043701.t1.exon1;Parent=MS.gene043701.t1 |
| chr7.4 | CDS | 52529428 | 52529508 | 52529428 | ID=cds.MS.gene043701.t1;Parent=MS.gene043701.t1 |
| chr7.4 | exon | 52530358 | 52530775 | 52530358 | ID=MS.gene043701.t1.exon2;Parent=MS.gene043701.t1 |
| chr7.4 | CDS | 52530358 | 52530775 | 52530358 | ID=cds.MS.gene043701.t1;Parent=MS.gene043701.t1 |
| chr7.4 | exon | 52530841 | 52530962 | 52530841 | ID=MS.gene043701.t1.exon3;Parent=MS.gene043701.t1 |
| chr7.4 | CDS | 52530841 | 52530962 | 52530841 | ID=cds.MS.gene043701.t1;Parent=MS.gene043701.t1 |
| chr7.4 | exon | 52531341 | 52531610 | 52531341 | ID=MS.gene043701.t1.exon4;Parent=MS.gene043701.t1 |
| chr7.4 | CDS | 52531341 | 52531610 | 52531341 | ID=cds.MS.gene043701.t1;Parent=MS.gene043701.t1 |
| Gene Sequence |
| Protein sequence |
