Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043705.t1 | AES78884.2 | 84.2 | 292 | 44 | 2 | 1 | 290 | 2 | 293 | 2.80E-135 | 491.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043705.t1 | Q8L3W1 | 28.7 | 327 | 171 | 8 | 1 | 277 | 22 | 336 | 2.2e-24 | 114.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043705.t1 | G7KVV7 | 84.2 | 292 | 44 | 2 | 1 | 290 | 2 | 293 | 2.0e-135 | 491.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043705.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043705.t1 | MTR_7g050590 | 84.247 | 292 | 44 | 2 | 1 | 290 | 2 | 293 | 1.27e-179 | 497 |
| MS.gene043705.t1 | MTR_7g050560 | 73.026 | 304 | 63 | 4 | 1 | 302 | 29 | 315 | 1.66e-155 | 437 |
| MS.gene043705.t1 | MTR_7g050580 | 69.637 | 303 | 75 | 4 | 1 | 302 | 29 | 315 | 3.42e-144 | 408 |
| MS.gene043705.t1 | MTR_7g050710 | 68.475 | 295 | 85 | 5 | 1 | 290 | 29 | 320 | 2.44e-141 | 401 |
| MS.gene043705.t1 | MTR_3g098790 | 68.729 | 291 | 83 | 4 | 1 | 290 | 29 | 312 | 5.34e-137 | 390 |
| MS.gene043705.t1 | MTR_7g050720 | 61.565 | 294 | 96 | 8 | 1 | 279 | 26 | 317 | 8.57e-116 | 337 |
| MS.gene043705.t1 | MTR_1g035460 | 36.825 | 315 | 164 | 8 | 1 | 294 | 2 | 302 | 4.82e-57 | 189 |
| MS.gene043705.t1 | MTR_8g103940 | 37.755 | 294 | 149 | 10 | 1 | 277 | 55 | 331 | 1.36e-48 | 169 |
| MS.gene043705.t1 | MTR_1g108780 | 34.471 | 293 | 161 | 9 | 1 | 277 | 13 | 290 | 2.87e-46 | 162 |
| MS.gene043705.t1 | MTR_5g044670 | 32.203 | 295 | 175 | 8 | 1 | 285 | 32 | 311 | 3.01e-39 | 140 |
| MS.gene043705.t1 | MTR_7g050640 | 71.765 | 85 | 24 | 0 | 1 | 85 | 29 | 113 | 2.00e-37 | 129 |
| MS.gene043705.t1 | MTR_3g061320 | 33.452 | 281 | 155 | 10 | 1 | 276 | 26 | 279 | 1.06e-36 | 132 |
| MS.gene043705.t1 | MTR_3g061370 | 29.348 | 276 | 178 | 4 | 1 | 276 | 23 | 281 | 1.30e-32 | 122 |
| MS.gene043705.t1 | MTR_3g061350 | 29.348 | 276 | 178 | 5 | 1 | 276 | 26 | 284 | 5.54e-32 | 120 |
| MS.gene043705.t1 | MTR_3g061340 | 28.622 | 283 | 161 | 8 | 1 | 276 | 26 | 274 | 8.58e-29 | 111 |
| MS.gene043705.t1 | MTR_3g061310 | 30.605 | 281 | 169 | 10 | 1 | 276 | 26 | 285 | 1.07e-27 | 108 |
| MS.gene043705.t1 | MTR_1g035570 | 32.014 | 278 | 177 | 7 | 1 | 277 | 21 | 287 | 2.78e-26 | 107 |
| MS.gene043705.t1 | MTR_1g035640 | 31.560 | 282 | 162 | 9 | 1 | 275 | 21 | 278 | 3.31e-26 | 107 |
| MS.gene043705.t1 | MTR_6g043890 | 29.412 | 272 | 172 | 10 | 1 | 263 | 31 | 291 | 3.79e-24 | 100 |
| MS.gene043705.t1 | MTR_5g070440 | 26.389 | 288 | 151 | 7 | 1 | 280 | 37 | 271 | 3.92e-24 | 99.4 |
| MS.gene043705.t1 | MTR_3g061330 | 29.570 | 186 | 120 | 1 | 1 | 186 | 26 | 200 | 3.95e-23 | 95.9 |
| MS.gene043705.t1 | MTR_6g061070 | 29.766 | 299 | 176 | 12 | 1 | 276 | 34 | 321 | 8.32e-23 | 98.2 |
| MS.gene043705.t1 | MTR_3g005490 | 25.347 | 288 | 145 | 7 | 1 | 280 | 37 | 262 | 2.35e-22 | 94.4 |
| MS.gene043705.t1 | MTR_1g021270 | 24.566 | 346 | 206 | 10 | 1 | 298 | 31 | 369 | 3.11e-22 | 97.1 |
| MS.gene043705.t1 | MTR_4g119990 | 29.310 | 290 | 182 | 10 | 1 | 276 | 31 | 311 | 4.44e-22 | 95.5 |
| MS.gene043705.t1 | MTR_3g061290 | 48.193 | 83 | 43 | 0 | 1 | 83 | 26 | 108 | 1.29e-21 | 90.9 |
| MS.gene043705.t1 | MTR_3g005480 | 25.260 | 289 | 145 | 8 | 1 | 280 | 37 | 263 | 1.90e-21 | 91.7 |
| MS.gene043705.t1 | MTR_1g021410 | 24.367 | 316 | 188 | 7 | 1 | 276 | 38 | 342 | 2.10e-21 | 93.2 |
| MS.gene043705.t1 | MTR_1g021360 | 26.966 | 267 | 185 | 5 | 1 | 264 | 198 | 457 | 1.44e-20 | 91.7 |
| MS.gene043705.t1 | MTR_1g035620 | 26.481 | 287 | 165 | 6 | 1 | 275 | 25 | 277 | 2.82e-20 | 90.5 |
| MS.gene043705.t1 | MTR_3g005420 | 27.143 | 280 | 159 | 9 | 1 | 280 | 305 | 539 | 5.85e-20 | 90.1 |
| MS.gene043705.t1 | MTR_3g005420 | 23.396 | 265 | 135 | 5 | 1 | 264 | 56 | 253 | 1.79e-14 | 73.9 |
| MS.gene043705.t1 | MTR_3g005460 | 26.644 | 289 | 157 | 8 | 1 | 280 | 278 | 520 | 1.31e-19 | 89.4 |
| MS.gene043705.t1 | MTR_3g005460 | 24.242 | 264 | 132 | 7 | 1 | 264 | 41 | 236 | 3.99e-17 | 82.0 |
| MS.gene043705.t1 | MTR_1g050845 | 26.897 | 290 | 148 | 8 | 1 | 275 | 25 | 265 | 1.43e-19 | 89.4 |
| MS.gene043705.t1 | MTR_3g005495 | 27.652 | 264 | 130 | 8 | 1 | 264 | 259 | 461 | 5.65e-19 | 87.0 |
| MS.gene043705.t1 | MTR_3g005495 | 33.051 | 118 | 68 | 2 | 1 | 118 | 29 | 135 | 2.95e-17 | 82.0 |
| MS.gene043705.t1 | MTR_1g034240 | 42.169 | 83 | 48 | 0 | 1 | 83 | 23 | 105 | 1.04e-18 | 86.3 |
| MS.gene043705.t1 | MTR_1g034240 | 29.323 | 133 | 88 | 2 | 151 | 283 | 272 | 398 | 1.42e-11 | 65.1 |
| MS.gene043705.t1 | MTR_4g068320 | 39.583 | 96 | 56 | 1 | 1 | 96 | 22 | 115 | 1.31e-18 | 85.9 |
| MS.gene043705.t1 | MTR_4g068320 | 31.707 | 123 | 78 | 2 | 160 | 282 | 277 | 393 | 1.06e-11 | 65.5 |
| MS.gene043705.t1 | MTR_3g005440 | 33.036 | 112 | 70 | 1 | 1 | 112 | 36 | 142 | 4.68e-17 | 81.3 |
| MS.gene043705.t1 | MTR_3g005440 | 35.000 | 100 | 63 | 1 | 4 | 103 | 261 | 358 | 1.58e-11 | 65.1 |
| MS.gene043705.t1 | MTR_1g021350 | 25.517 | 290 | 184 | 7 | 1 | 269 | 37 | 315 | 9.43e-16 | 77.0 |
| MS.gene043705.t1 | MTR_1g035520 | 25.987 | 304 | 165 | 11 | 1 | 264 | 88 | 371 | 1.09e-15 | 77.0 |
| MS.gene043705.t1 | MTR_3g061220 | 40.964 | 83 | 36 | 1 | 1 | 83 | 26 | 95 | 1.79e-15 | 71.6 |
| MS.gene043705.t1 | MTR_1g035510 | 45.783 | 83 | 42 | 2 | 1 | 83 | 2 | 81 | 1.48e-14 | 72.0 |
| MS.gene043705.t1 | MTR_1g035480 | 45.783 | 83 | 42 | 2 | 1 | 83 | 33 | 112 | 1.95e-14 | 70.5 |
| MS.gene043705.t1 | MTR_3g005420 | 23.396 | 265 | 135 | 5 | 1 | 264 | 37 | 234 | 2.06e-14 | 73.6 |
| MS.gene043705.t1 | MTR_1g034210 | 38.554 | 83 | 49 | 1 | 1 | 83 | 23 | 103 | 2.30e-14 | 72.8 |
| MS.gene043705.t1 | MTR_1g034210 | 38.554 | 83 | 49 | 1 | 1 | 83 | 23 | 103 | 3.17e-14 | 72.8 |
| MS.gene043705.t1 | MTR_1g035650 | 29.353 | 201 | 111 | 5 | 1 | 192 | 25 | 203 | 7.58e-14 | 69.7 |
| MS.gene043705.t1 | MTR_1g035490 | 35.537 | 121 | 71 | 4 | 159 | 277 | 81 | 196 | 1.33e-11 | 64.7 |
| MS.gene043705.t1 | MTR_1g033740 | 40.964 | 83 | 46 | 2 | 1 | 83 | 38 | 117 | 1.51e-11 | 62.8 |
| MS.gene043705.t1 | MTR_1g035500 | 42.169 | 83 | 45 | 2 | 1 | 83 | 41 | 120 | 4.33e-11 | 61.2 |
| MS.gene043705.t1 | MTR_1g021320 | 36.000 | 75 | 48 | 0 | 1 | 75 | 198 | 272 | 4.55e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043705.t1 | AT3G18990 | 28.746 | 327 | 171 | 8 | 1 | 277 | 22 | 336 | 5.01e-32 | 122 |
| MS.gene043705.t1 | AT3G18990 | 49.398 | 83 | 42 | 0 | 1 | 83 | 22 | 104 | 2.63e-21 | 93.2 |
| MS.gene043705.t1 | AT4G01580 | 46.591 | 88 | 47 | 0 | 1 | 88 | 46 | 133 | 4.68e-20 | 86.3 |
| MS.gene043705.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 1 | 88 | 46 | 133 | 6.86e-19 | 83.2 |
| MS.gene043705.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 1 | 88 | 9 | 96 | 7.02e-19 | 82.8 |
| MS.gene043705.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 1 | 88 | 46 | 133 | 8.54e-19 | 83.2 |
| MS.gene043705.t1 | AT1G49475 | 43.529 | 85 | 47 | 1 | 1 | 85 | 50 | 133 | 1.32e-17 | 79.7 |
| MS.gene043705.t1 | AT4G33280 | 25.329 | 304 | 191 | 12 | 1 | 284 | 39 | 326 | 2.37e-16 | 78.6 |
Find 45 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAGTGGAAATTAAATT+TGG | 0.244297 | 7.4:-52609899 | MS.gene043705:CDS |
| TATTTCTGCACAAACTTTCT+TGG | 0.265809 | 7.4:+52609967 | None:intergenic |
| AAGAAGCTGCTCAAGGATAA+AGG | 0.327217 | 7.4:-52608334 | None:intergenic |
| CAGTTGCAGCTAAAGCTAAC+AGG | 0.335792 | 7.4:-52609711 | MS.gene043705:CDS |
| AATTTCCACTTTGCACCATT+TGG | 0.355722 | 7.4:+52609907 | None:intergenic |
| AGGTGTTAAATAAAGGAGTT+TGG | 0.356590 | 7.4:-52608663 | MS.gene043705:CDS |
| TGCCAAAATATGGTTTCAAA+AGG | 0.385833 | 7.4:-52609866 | MS.gene043705:CDS |
| GAAAGGATAATTTATCTCTA+AGG | 0.389930 | 7.4:+52609738 | None:intergenic |
| TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7.4:-52608713 | MS.gene043705:CDS |
| GGACTGCAAGGCTTTCTATC+AGG | 0.412415 | 7.4:-52608642 | MS.gene043705:CDS |
| CAGAATATACCACGTTCGTT+TGG | 0.431161 | 7.4:-52608733 | MS.gene043705:CDS |
| TAGCTTTAGCTGCAACTGTA+TGG | 0.432634 | 7.4:+52609716 | None:intergenic |
| GATATTTGAAAAGCAGAAGA+TGG | 0.444393 | 7.4:+52609803 | None:intergenic |
| TCGCATTTGATAAACCTTCT+CGG | 0.457980 | 7.4:+52609944 | None:intergenic |
| AAATATGGTTTCAAAAGGGT+TGG | 0.462144 | 7.4:-52609861 | MS.gene043705:CDS |
| ATATATCTAAAGACTCCAAA+TGG | 0.497009 | 7.4:-52609922 | MS.gene043705:CDS |
| TAAAGTTGGAAAATTGCAAA+AGG | 0.507000 | 7.4:-52609572 | MS.gene043705:CDS |
| AGGTTTATTTCCTTGACCAT+TGG | 0.507461 | 7.4:+52609684 | None:intergenic |
| GAGGACAATAAATTGAAAGT+TGG | 0.509934 | 7.4:-52608565 | MS.gene043705:CDS |
| CAAGGAAATAAACCTCCAAA+TGG | 0.511352 | 7.4:-52609676 | MS.gene043705:CDS |
| GCCAAAATATGGTTTCAAAA+GGG | 0.514837 | 7.4:-52609865 | MS.gene043705:CDS |
| ATAAAGGAGTTTGGACTGCA+AGG | 0.517740 | 7.4:-52608654 | MS.gene043705:CDS |
| TAGAGCATCTCAAAAGAGAA+AGG | 0.538111 | 7.4:-52609644 | MS.gene043705:CDS |
| CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7.4:+52609342 | None:intergenic |
| GGACTAAAATTTGAACTCAC+AGG | 0.563798 | 7.4:-52608607 | MS.gene043705:CDS |
| TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7.4:-52608700 | MS.gene043705:CDS |
| CCACATGGAATTGGAAGCAG+TGG | 0.577529 | 7.4:-52609601 | MS.gene043705:CDS |
| GAGCATCACTCTCTAGCTCA+TGG | 0.577825 | 7.4:-52609826 | MS.gene043705:CDS |
| AACAGGGTCTCCAATGGTCA+AGG | 0.584013 | 7.4:-52609694 | MS.gene043705:CDS |
| TGAACTCACAGGTGGATGGA+AGG | 0.586048 | 7.4:-52608596 | MS.gene043705:CDS |
| AATTTGAACTCACAGGTGGA+TGG | 0.587922 | 7.4:-52608600 | MS.gene043705:CDS |
| TCTATCAGGAAGGACAGTAA+AGG | 0.599979 | 7.4:-52608628 | MS.gene043705:CDS |
| ATAAAAGAAGAAGCTGCTCA+AGG | 0.603783 | 7.4:-52608341 | MS.gene043705:CDS |
| TTAGCTGCAACTGTATGGAA+AGG | 0.604776 | 7.4:+52609721 | None:intergenic |
| CTAAAATTTGAACTCACAGG+TGG | 0.610484 | 7.4:-52608604 | MS.gene043705:CDS |
| TGCAAGGCTTTCTATCAGGA+AGG | 0.610588 | 7.4:-52608638 | MS.gene043705:CDS |
| AGACTCCAAATGGTGCAAAG+TGG | 0.616755 | 7.4:-52609912 | MS.gene043705:CDS |
| TTTGTGCAGAAATACCGAGA+AGG | 0.623919 | 7.4:-52609958 | MS.gene043705:CDS |
| AAAGCTAACAGGGTCTCCAA+TGG | 0.631965 | 7.4:-52609700 | MS.gene043705:CDS |
| AGTTGCAGCTAAAGCTAACA+GGG | 0.663561 | 7.4:-52609710 | MS.gene043705:CDS |
| TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7.4:-52608584 | MS.gene043705:CDS |
| TGCACGCATGACAACAACAA+AGG | 0.693553 | 7.4:+52609338 | None:intergenic |
| CCACTGCTTCCAATTCCATG+TGG | 0.718693 | 7.4:+52609601 | None:intergenic |
| CATACTGACAGAGAGTCCAA+AGG | 0.719746 | 7.4:-52609535 | MS.gene043705:intron |
| TGTCTATTACCAAACGAACG+TGG | 0.725731 | 7.4:+52608724 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAACGATTTAATATGA+AGG | + | chr7.4:52609488-52609507 | None:intergenic | 20.0% |
| !!! | AGTTATTTGATTAGTTTCTT+AGG | - | chr7.4:52609181-52609200 | MS.gene043705:intron | 20.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.4:52608385-52608404 | MS.gene043705:intron | 25.0% |
| ! | GAAAGGATAATTTATCTCTA+AGG | + | chr7.4:52608572-52608591 | None:intergenic | 25.0% |
| ! | TAAAAAGTGATGCCAAAATA+TGG | - | chr7.4:52608431-52608450 | MS.gene043705:intron | 25.0% |
| ! | TAAAGTTGGAAAATTGCAAA+AGG | - | chr7.4:52608735-52608754 | MS.gene043705:intron | 25.0% |
| ! | TGCAAAATTGGAACATAATA+AGG | + | chr7.4:52608876-52608895 | None:intergenic | 25.0% |
| ! | TGCAAAGTGGAAATTAAATT+TGG | - | chr7.4:52608408-52608427 | MS.gene043705:intron | 25.0% |
| !! | TATTATGTTCCAATTTTGCA+GGG | - | chr7.4:52608876-52608895 | MS.gene043705:intron | 25.0% |
| !! | TTATTATGTTCCAATTTTGC+AGG | - | chr7.4:52608875-52608894 | MS.gene043705:intron | 25.0% |
| !!! | CATTTGTCATTTCTTTTACT+TGG | - | chr7.4:52609551-52609570 | MS.gene043705:CDS | 25.0% |
| !!! | CATTTTCAGGTGTTAAATAA+AGG | - | chr7.4:52609637-52609656 | MS.gene043705:CDS | 25.0% |
| AAATATGGTTTCAAAAGGGT+TGG | - | chr7.4:52608446-52608465 | MS.gene043705:intron | 30.0% | |
| AAGACACAATCTTATACCTT+TGG | + | chr7.4:52608791-52608810 | None:intergenic | 30.0% | |
| AGGTGTTAAATAAAGGAGTT+TGG | - | chr7.4:52609644-52609663 | MS.gene043705:CDS | 30.0% | |
| GAGGACAATAAATTGAAAGT+TGG | - | chr7.4:52609742-52609761 | MS.gene043705:CDS | 30.0% | |
| GATATTTGAAAAGCAGAAGA+TGG | + | chr7.4:52608507-52608526 | None:intergenic | 30.0% | |
| GCCAAAATATGGTTTCAAAA+GGG | - | chr7.4:52608442-52608461 | MS.gene043705:intron | 30.0% | |
| GTAAAGACTAGAGAAAGATT+TGG | + | chr7.4:52609061-52609080 | None:intergenic | 30.0% | |
| GTAAGTTACAATGACATACT+TGG | - | chr7.4:52609019-52609038 | MS.gene043705:intron | 30.0% | |
| TAATCATAACGTCACTTGTT+AGG | + | chr7.4:52609424-52609443 | None:intergenic | 30.0% | |
| TAGTTTCTTAGGTGATTGAT+AGG | - | chr7.4:52609192-52609211 | MS.gene043705:intron | 30.0% | |
| TGCCAAAATATGGTTTCAAA+AGG | - | chr7.4:52608441-52608460 | MS.gene043705:intron | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | chr7.4:52609594-52609613 | MS.gene043705:CDS | 30.0% | |
| ! | CTCTAGTCTTTACTTGATTA+AGG | - | chr7.4:52609068-52609087 | MS.gene043705:intron | 30.0% |
| ! | TATTTCTGCACAAACTTTCT+TGG | + | chr7.4:52608343-52608362 | None:intergenic | 30.0% |
| ! | TCTGAATTTTATCAACCACA+TGG | - | chr7.4:52608691-52608710 | MS.gene043705:CDS | 30.0% |
| ! | TTTTATCAACCACATGGAAT+TGG | - | chr7.4:52608697-52608716 | MS.gene043705:CDS | 30.0% |
| !! | TTTGATTTGGATAAGAAGAG+AGG | - | chr7.4:52609607-52609626 | MS.gene043705:CDS | 30.0% |
| !!! | ACCCTTTTGAAACCATATTT+TGG | + | chr7.4:52608446-52608465 | None:intergenic | 30.0% |
| AATTTCCACTTTGCACCATT+TGG | + | chr7.4:52608403-52608422 | None:intergenic | 35.0% | |
| AGGTTTATTTCCTTGACCAT+TGG | + | chr7.4:52608626-52608645 | None:intergenic | 35.0% | |
| AGTGTTCAACTTCTCAAAGT+AGG | - | chr7.4:52609851-52609870 | MS.gene043705:CDS | 35.0% | |
| ATAAAAGAAGAAGCTGCTCA+AGG | - | chr7.4:52609966-52609985 | MS.gene043705:CDS | 35.0% | |
| CAAAGACTATGTATGCACTA+AGG | - | chr7.4:52609126-52609145 | MS.gene043705:intron | 35.0% | |
| CAAGGAAATAAACCTCCAAA+TGG | - | chr7.4:52608631-52608650 | MS.gene043705:CDS | 35.0% | |
| CTAAAATTTGAACTCACAGG+TGG | - | chr7.4:52609703-52609722 | MS.gene043705:CDS | 35.0% | |
| GGACTAAAATTTGAACTCAC+AGG | - | chr7.4:52609700-52609719 | MS.gene043705:CDS | 35.0% | |
| GTATTTGAATAACGCTTGAG+AGG | - | chr7.4:52609245-52609264 | MS.gene043705:intron | 35.0% | |
| TCGCATTTGATAAACCTTCT+CGG | + | chr7.4:52608366-52608385 | None:intergenic | 35.0% | |
| TGGAAAGATTCTGCATAAGA+TGG | + | chr7.4:52609945-52609964 | None:intergenic | 35.0% | |
| ! | CTACAATTTTCACCATTTGG+AGG | + | chr7.4:52608646-52608665 | None:intergenic | 35.0% |
| ! | GAGAGGAGATATTCATTTTC+AGG | - | chr7.4:52609624-52609643 | MS.gene043705:CDS | 35.0% |
| ! | GAGCAGCTTCTTCTTTTATT+TGG | + | chr7.4:52609965-52609984 | None:intergenic | 35.0% |
| ! | GCTCTACAATTTTCACCATT+TGG | + | chr7.4:52608649-52608668 | None:intergenic | 35.0% |
| ! | TAGAGCATCTCAAAAGAGAA+AGG | - | chr7.4:52608663-52608682 | MS.gene043705:CDS | 35.0% |
| !!! | AGCAGTGGTTGTTTTAAAGT+TGG | - | chr7.4:52608721-52608740 | MS.gene043705:CDS | 35.0% |
| AATTTGAACTCACAGGTGGA+TGG | - | chr7.4:52609707-52609726 | MS.gene043705:CDS | 40.0% | |
| ACCTTTCTGTTGATACCAAC+TGG | - | chr7.4:52609361-52609380 | MS.gene043705:CDS | 40.0% | |
| AGTTGCAGCTAAAGCTAACA+GGG | - | chr7.4:52608597-52608616 | MS.gene043705:CDS | 40.0% | |
| ATAAAGGAGTTTGGACTGCA+AGG | - | chr7.4:52609653-52609672 | MS.gene043705:CDS | 40.0% | |
| CACTTCTTTCCCTGCAAAAT+TGG | + | chr7.4:52608888-52608907 | None:intergenic | 40.0% | |
| CAGAATATACCACGTTCGTT+TGG | - | chr7.4:52609574-52609593 | MS.gene043705:CDS | 40.0% | |
| TAGGATTGTCCATTTGAGCT+GGG | + | chr7.4:52609405-52609424 | None:intergenic | 40.0% | |
| TCTATCAGGAAGGACAGTAA+AGG | - | chr7.4:52609679-52609698 | MS.gene043705:CDS | 40.0% | |
| TGTCTATTACCAAACGAACG+TGG | + | chr7.4:52609586-52609605 | None:intergenic | 40.0% | |
| TTAGCTGCAACTGTATGGAA+AGG | + | chr7.4:52608589-52608608 | None:intergenic | 40.0% | |
| TTAGGATTGTCCATTTGAGC+TGG | + | chr7.4:52609406-52609425 | None:intergenic | 40.0% | |
| TTGAATAACGCTTGAGAGGA+GGG | - | chr7.4:52609249-52609268 | MS.gene043705:intron | 40.0% | |
| TTTGAATAACGCTTGAGAGG+AGG | - | chr7.4:52609248-52609267 | MS.gene043705:intron | 40.0% | |
| TTTGTGCAGAAATACCGAGA+AGG | - | chr7.4:52608349-52608368 | MS.gene043705:CDS | 40.0% | |
| ! | ACCAGTTGGTATCAACAGAA+AGG | + | chr7.4:52609365-52609384 | None:intergenic | 40.0% |
| !! | TAGCTTTAGCTGCAACTGTA+TGG | + | chr7.4:52608594-52608613 | None:intergenic | 40.0% |
| !! | TGCTGAACGTCATTTTCTAC+TGG | - | chr7.4:52608997-52609016 | MS.gene043705:intron | 40.0% |
| AAAGCTAACAGGGTCTCCAA+TGG | - | chr7.4:52608607-52608626 | MS.gene043705:CDS | 45.0% | |
| AGACTCCAAATGGTGCAAAG+TGG | - | chr7.4:52608395-52608414 | MS.gene043705:intron | 45.0% | |
| CAGTTGCAGCTAAAGCTAAC+AGG | - | chr7.4:52608596-52608615 | MS.gene043705:CDS | 45.0% | |
| CATACTGACAGAGAGTCCAA+AGG | - | chr7.4:52608772-52608791 | MS.gene043705:intron | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | chr7.4:52608968-52608987 | None:intergenic | 45.0% | |
| TGAATAACGCTTGAGAGGAG+GGG | - | chr7.4:52609250-52609269 | MS.gene043705:intron | 45.0% | |
| TGCAAGGCTTTCTATCAGGA+AGG | - | chr7.4:52609669-52609688 | MS.gene043705:CDS | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | chr7.4:52608972-52608991 | None:intergenic | 45.0% | |
| AACAGGGTCTCCAATGGTCA+AGG | - | chr7.4:52608613-52608632 | MS.gene043705:CDS | 50.0% | |
| AATGCTCAACAGGGACCAGT+TGG | + | chr7.4:52609379-52609398 | None:intergenic | 50.0% | |
| AGCATTGTGCCCAGCTCAAA+TGG | - | chr7.4:52609393-52609412 | MS.gene043705:CDS | 50.0% | |
| CCACATGGAATTGGAAGCAG+TGG | - | chr7.4:52608706-52608725 | MS.gene043705:CDS | 50.0% | |
| CCACTGCTTCCAATTCCATG+TGG | + | chr7.4:52608709-52608728 | None:intergenic | 50.0% | |
| GGACTGCAAGGCTTTCTATC+AGG | - | chr7.4:52609665-52609684 | MS.gene043705:CDS | 50.0% | |
| TGAACTCACAGGTGGATGGA+AGG | - | chr7.4:52609711-52609730 | MS.gene043705:CDS | 50.0% | |
| ! | GAGCATCACTCTCTAGCTCA+TGG | - | chr7.4:52608481-52608500 | MS.gene043705:CDS | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | chr7.4:52609723-52609742 | MS.gene043705:CDS | 50.0% |
| AGCTGGGCACAATGCTCAAC+AGG | + | chr7.4:52609389-52609408 | None:intergenic | 55.0% | |
| GCTGGGCACAATGCTCAACA+GGG | + | chr7.4:52609388-52609407 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52608337 | 52609992 | 52608337 | ID=MS.gene043705 |
| chr7.4 | mRNA | 52608337 | 52609992 | 52608337 | ID=MS.gene043705.t1;Parent=MS.gene043705 |
| chr7.4 | exon | 52609536 | 52609992 | 52609536 | ID=MS.gene043705.t1.exon1;Parent=MS.gene043705.t1 |
| chr7.4 | CDS | 52609536 | 52609992 | 52609536 | ID=cds.MS.gene043705.t1;Parent=MS.gene043705.t1 |
| chr7.4 | exon | 52609311 | 52609432 | 52609311 | ID=MS.gene043705.t1.exon2;Parent=MS.gene043705.t1 |
| chr7.4 | CDS | 52609311 | 52609432 | 52609311 | ID=cds.MS.gene043705.t1;Parent=MS.gene043705.t1 |
| chr7.4 | exon | 52608461 | 52608752 | 52608461 | ID=MS.gene043705.t1.exon3;Parent=MS.gene043705.t1 |
| chr7.4 | CDS | 52608461 | 52608752 | 52608461 | ID=cds.MS.gene043705.t1;Parent=MS.gene043705.t1 |
| chr7.4 | exon | 52608337 | 52608374 | 52608337 | ID=MS.gene043705.t1.exon4;Parent=MS.gene043705.t1 |
| chr7.4 | CDS | 52608337 | 52608374 | 52608337 | ID=cds.MS.gene043705.t1;Parent=MS.gene043705.t1 |
| Gene Sequence |
| Protein sequence |
