Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043706.t1 | XP_003622663.1 | 82 | 305 | 52 | 3 | 1 | 304 | 1 | 303 | 2.30E-140 | 508.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043706.t1 | Q8L3W1 | 27.8 | 338 | 178 | 7 | 13 | 291 | 6 | 336 | 2.9e-27 | 124.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043706.t1 | G7KVV4 | 82.0 | 305 | 52 | 3 | 1 | 304 | 1 | 303 | 1.6e-140 | 508.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043706.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043706.t1 | MTR_7g050560 | 81.967 | 305 | 52 | 3 | 1 | 304 | 1 | 303 | 0.0 | 518 |
| MS.gene043706.t1 | MTR_7g050590 | 72.148 | 298 | 65 | 4 | 28 | 308 | 1 | 297 | 3.29e-157 | 441 |
| MS.gene043706.t1 | MTR_3g098790 | 65.325 | 323 | 90 | 3 | 1 | 308 | 1 | 316 | 7.99e-150 | 423 |
| MS.gene043706.t1 | MTR_7g050580 | 68.025 | 319 | 71 | 4 | 1 | 304 | 1 | 303 | 2.31e-149 | 422 |
| MS.gene043706.t1 | MTR_7g050710 | 64.615 | 325 | 97 | 3 | 1 | 308 | 1 | 324 | 2.06e-148 | 419 |
| MS.gene043706.t1 | MTR_7g050720 | 58.228 | 316 | 105 | 6 | 5 | 293 | 2 | 317 | 1.24e-122 | 354 |
| MS.gene043706.t1 | MTR_8g103940 | 37.459 | 307 | 154 | 9 | 11 | 291 | 37 | 331 | 6.62e-53 | 181 |
| MS.gene043706.t1 | MTR_1g035460 | 36.242 | 298 | 145 | 7 | 28 | 291 | 1 | 287 | 1.34e-51 | 175 |
| MS.gene043706.t1 | MTR_1g108780 | 34.708 | 291 | 149 | 9 | 29 | 291 | 13 | 290 | 1.67e-47 | 166 |
| MS.gene043706.t1 | MTR_7g050640 | 64.602 | 113 | 40 | 0 | 1 | 113 | 1 | 113 | 3.77e-45 | 149 |
| MS.gene043706.t1 | MTR_3g061320 | 35.430 | 302 | 157 | 9 | 3 | 290 | 2 | 279 | 1.18e-43 | 150 |
| MS.gene043706.t1 | MTR_3g061370 | 35.172 | 290 | 163 | 11 | 11 | 290 | 7 | 281 | 4.29e-41 | 144 |
| MS.gene043706.t1 | MTR_3g061350 | 34.448 | 299 | 172 | 11 | 1 | 290 | 1 | 284 | 5.72e-41 | 144 |
| MS.gene043706.t1 | MTR_5g044670 | 30.492 | 305 | 183 | 9 | 13 | 298 | 16 | 310 | 2.12e-40 | 144 |
| MS.gene043706.t1 | MTR_3g061340 | 34.247 | 292 | 155 | 10 | 10 | 290 | 9 | 274 | 8.41e-40 | 140 |
| MS.gene043706.t1 | MTR_3g061310 | 32.323 | 297 | 179 | 9 | 3 | 290 | 2 | 285 | 1.14e-38 | 138 |
| MS.gene043706.t1 | MTR_3g061330 | 54.054 | 111 | 48 | 2 | 1 | 111 | 1 | 108 | 9.89e-34 | 124 |
| MS.gene043706.t1 | MTR_6g043890 | 31.849 | 292 | 161 | 10 | 11 | 277 | 13 | 291 | 5.76e-33 | 124 |
| MS.gene043706.t1 | MTR_1g035570 | 31.915 | 282 | 172 | 6 | 22 | 291 | 14 | 287 | 1.17e-32 | 125 |
| MS.gene043706.t1 | MTR_4g119990 | 29.703 | 303 | 186 | 8 | 11 | 290 | 13 | 311 | 3.81e-31 | 120 |
| MS.gene043706.t1 | MTR_3g061290 | 54.902 | 102 | 44 | 1 | 10 | 111 | 9 | 108 | 7.85e-31 | 115 |
| MS.gene043706.t1 | MTR_1g035620 | 28.929 | 280 | 191 | 5 | 10 | 289 | 6 | 277 | 9.03e-30 | 117 |
| MS.gene043706.t1 | MTR_3g005490 | 26.855 | 283 | 165 | 7 | 13 | 294 | 21 | 262 | 1.75e-29 | 113 |
| MS.gene043706.t1 | MTR_1g035640 | 29.932 | 294 | 181 | 8 | 13 | 297 | 9 | 286 | 9.36e-29 | 115 |
| MS.gene043706.t1 | MTR_3g005480 | 28.179 | 291 | 152 | 8 | 13 | 294 | 21 | 263 | 1.33e-28 | 111 |
| MS.gene043706.t1 | MTR_1g050845 | 28.571 | 287 | 171 | 4 | 10 | 289 | 6 | 265 | 8.77e-28 | 113 |
| MS.gene043706.t1 | MTR_3g005420 | 28.169 | 284 | 169 | 7 | 13 | 294 | 289 | 539 | 7.70e-27 | 110 |
| MS.gene043706.t1 | MTR_3g005420 | 23.913 | 276 | 138 | 8 | 13 | 278 | 40 | 253 | 1.29e-15 | 77.4 |
| MS.gene043706.t1 | MTR_5g070440 | 27.113 | 284 | 172 | 7 | 13 | 294 | 21 | 271 | 1.31e-26 | 105 |
| MS.gene043706.t1 | MTR_3g061220 | 47.170 | 106 | 41 | 2 | 6 | 111 | 5 | 95 | 2.56e-25 | 98.2 |
| MS.gene043706.t1 | MTR_1g021360 | 29.412 | 272 | 168 | 6 | 24 | 278 | 193 | 457 | 4.04e-25 | 105 |
| MS.gene043706.t1 | MTR_1g021360 | 29.787 | 141 | 95 | 2 | 11 | 148 | 24 | 163 | 2.00e-11 | 64.7 |
| MS.gene043706.t1 | MTR_1g021410 | 26.154 | 325 | 187 | 9 | 14 | 290 | 23 | 342 | 4.01e-24 | 100 |
| MS.gene043706.t1 | MTR_3g005495 | 30.827 | 266 | 137 | 9 | 13 | 278 | 243 | 461 | 1.91e-23 | 100 |
| MS.gene043706.t1 | MTR_3g005495 | 38.372 | 86 | 53 | 0 | 29 | 114 | 29 | 114 | 1.36e-17 | 83.2 |
| MS.gene043706.t1 | MTR_6g061070 | 26.625 | 323 | 185 | 12 | 7 | 290 | 12 | 321 | 9.45e-23 | 98.2 |
| MS.gene043706.t1 | MTR_1g021435 | 24.854 | 342 | 195 | 7 | 6 | 289 | 15 | 352 | 4.76e-22 | 95.5 |
| MS.gene043706.t1 | MTR_4g068320 | 32.727 | 165 | 107 | 2 | 13 | 173 | 6 | 170 | 8.29e-22 | 95.1 |
| MS.gene043706.t1 | MTR_4g068320 | 30.769 | 130 | 84 | 2 | 167 | 296 | 270 | 393 | 6.69e-13 | 68.9 |
| MS.gene043706.t1 | MTR_1g021400 | 25.893 | 336 | 197 | 10 | 11 | 297 | 28 | 360 | 8.34e-22 | 94.7 |
| MS.gene043706.t1 | MTR_3g005460 | 26.102 | 295 | 173 | 9 | 11 | 294 | 260 | 520 | 8.67e-22 | 95.9 |
| MS.gene043706.t1 | MTR_3g005460 | 37.255 | 102 | 64 | 0 | 13 | 114 | 25 | 126 | 2.32e-19 | 88.6 |
| MS.gene043706.t1 | MTR_1g034240 | 41.414 | 99 | 58 | 0 | 13 | 111 | 7 | 105 | 1.20e-20 | 92.0 |
| MS.gene043706.t1 | MTR_1g034240 | 29.008 | 131 | 87 | 2 | 167 | 297 | 274 | 398 | 1.83e-12 | 67.8 |
| MS.gene043706.t1 | MTR_1g035650 | 31.122 | 196 | 111 | 3 | 10 | 185 | 6 | 197 | 9.34e-20 | 85.9 |
| MS.gene043706.t1 | MTR_1g021380 | 25.000 | 324 | 187 | 8 | 16 | 292 | 20 | 334 | 1.70e-19 | 87.8 |
| MS.gene043706.t1 | MTR_1g035480 | 36.429 | 140 | 78 | 3 | 9 | 148 | 13 | 141 | 8.20e-19 | 82.8 |
| MS.gene043706.t1 | MTR_1g035440 | 40.741 | 108 | 57 | 2 | 11 | 114 | 13 | 117 | 2.56e-18 | 82.8 |
| MS.gene043706.t1 | MTR_1g021330 | 24.024 | 333 | 189 | 7 | 11 | 283 | 24 | 352 | 4.21e-18 | 84.3 |
| MS.gene043706.t1 | MTR_1g033740 | 30.994 | 171 | 104 | 4 | 9 | 177 | 18 | 176 | 4.12e-17 | 78.6 |
| MS.gene043706.t1 | MTR_1g034210 | 38.384 | 99 | 59 | 1 | 13 | 111 | 7 | 103 | 3.49e-16 | 78.2 |
| MS.gene043706.t1 | MTR_1g034210 | 38.384 | 99 | 59 | 1 | 13 | 111 | 7 | 103 | 5.58e-16 | 77.8 |
| MS.gene043706.t1 | MTR_3g005440 | 36.364 | 88 | 56 | 0 | 27 | 114 | 34 | 121 | 7.29e-16 | 78.2 |
| MS.gene043706.t1 | MTR_3g005440 | 33.945 | 109 | 71 | 1 | 7 | 114 | 235 | 343 | 4.78e-14 | 72.4 |
| MS.gene043706.t1 | MTR_3g005420 | 23.913 | 276 | 138 | 8 | 13 | 278 | 21 | 234 | 1.37e-15 | 77.4 |
| MS.gene043706.t1 | MTR_1g035500 | 33.117 | 154 | 90 | 4 | 7 | 160 | 19 | 159 | 1.44e-15 | 73.9 |
| MS.gene043706.t1 | MTR_1g021350 | 25.000 | 304 | 184 | 11 | 14 | 283 | 22 | 315 | 2.49e-15 | 75.9 |
| MS.gene043706.t1 | MTR_1g035510 | 35.659 | 129 | 68 | 4 | 28 | 156 | 1 | 114 | 1.25e-14 | 72.0 |
| MS.gene043706.t1 | MTR_1g035470 | 35.659 | 129 | 69 | 5 | 28 | 156 | 1 | 115 | 2.93e-14 | 69.3 |
| MS.gene043706.t1 | MTR_1g035520 | 43.820 | 89 | 47 | 2 | 28 | 116 | 87 | 172 | 1.08e-13 | 71.2 |
| MS.gene043706.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 5.25e-13 | 68.6 |
| MS.gene043706.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 5.97e-13 | 68.6 |
| MS.gene043706.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 1.01e-12 | 68.6 |
| MS.gene043706.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 1.03e-12 | 68.6 |
| MS.gene043706.t1 | MTR_1g021320 | 38.793 | 116 | 64 | 3 | 168 | 283 | 486 | 594 | 2.00e-12 | 68.2 |
| MS.gene043706.t1 | MTR_1g021320 | 28.859 | 149 | 97 | 2 | 11 | 153 | 23 | 168 | 4.16e-12 | 67.0 |
| MS.gene043706.t1 | MTR_1g021320 | 33.333 | 90 | 59 | 1 | 14 | 103 | 184 | 272 | 4.16e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043706.t1 | AT4G01580 | 41.739 | 115 | 66 | 1 | 3 | 116 | 19 | 133 | 3.75e-24 | 97.4 |
| MS.gene043706.t1 | AT1G49475 | 40.323 | 124 | 71 | 2 | 12 | 133 | 33 | 155 | 3.91e-24 | 97.4 |
| MS.gene043706.t1 | AT3G18990 | 44.444 | 99 | 55 | 0 | 13 | 111 | 6 | 104 | 7.74e-24 | 99.8 |
| MS.gene043706.t1 | AT3G18990 | 44.444 | 99 | 55 | 0 | 13 | 111 | 6 | 104 | 1.15e-23 | 99.8 |
| MS.gene043706.t1 | AT3G18960 | 40.000 | 115 | 68 | 1 | 3 | 116 | 19 | 133 | 1.64e-22 | 93.2 |
| MS.gene043706.t1 | AT3G18960 | 40.000 | 115 | 68 | 1 | 3 | 116 | 19 | 133 | 1.88e-22 | 93.2 |
| MS.gene043706.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 29 | 116 | 9 | 96 | 2.53e-18 | 81.3 |
| MS.gene043706.t1 | AT3G53310 | 34.314 | 102 | 65 | 2 | 3 | 104 | 2 | 101 | 2.80e-12 | 66.2 |
Find 51 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATGGAAATTAAATT+TGG | 0.194062 | 7.4:-52616560 | MS.gene043706:CDS |
| TTTCATCAACCATGTGAAAT+TGG | 0.211929 | 7.4:-52616316 | MS.gene043706:CDS |
| GAGAGGAGATGTTTATTTGC+AGG | 0.289134 | 7.4:-52615544 | MS.gene043706:CDS |
| TAAATAGTGATGGCAAAATA+TGG | 0.289847 | 7.4:-52616537 | MS.gene043706:CDS |
| CCTCTTTAGCTGCAACTCTT+TGG | 0.301743 | 7.4:+52616377 | None:intergenic |
| GAAAGGATAATTTATCTCTA+AGG | 0.312559 | 7.4:+52616399 | None:intergenic |
| CTAATCAGGATGACCCTTAC+AGG | 0.315799 | 7.4:-52615489 | MS.gene043706:CDS |
| AGACTCCAAATGGTGCAAAA+TGG | 0.337543 | 7.4:-52616573 | MS.gene043706:CDS |
| TGGTAATAGACACTTTGATT+TGG | 0.367753 | 7.4:-52615574 | MS.gene043706:CDS |
| GGTGGAACACCGATTTCTTC+TGG | 0.384474 | 7.4:-52615962 | MS.gene043706:intron |
| ACAATTTGTGTTGTCATTGT+CGG | 0.390955 | 7.4:+52615335 | None:intergenic |
| ATCCTGATTAGGAACTTTGC+AGG | 0.392352 | 7.4:+52615501 | None:intergenic |
| TGGCAAAATATGGTTTGAAA+AGG | 0.393696 | 7.4:-52616527 | MS.gene043706:CDS |
| AGGTGTTAAATGAAGGAGTT+TGG | 0.403488 | 7.4:-52615524 | MS.gene043706:CDS |
| CCAAAGAGTTGCAGCTAAAG+AGG | 0.405343 | 7.4:-52616377 | MS.gene043706:CDS |
| CAGAATATACCACGTATGTT+TGG | 0.412403 | 7.4:-52615594 | MS.gene043706:CDS |
| CTGTAAGGGTCATCCTGATT+AGG | 0.413088 | 7.4:+52615490 | None:intergenic |
| GGCCTGCAAAGTTCCTAATC+AGG | 0.416382 | 7.4:-52615503 | MS.gene043706:CDS |
| GTCTAACATGTGGTCCTGTA+AGG | 0.429846 | 7.4:+52615475 | None:intergenic |
| AAATATGGTTTGAAAAGGGT+TGG | 0.440218 | 7.4:-52616522 | MS.gene043706:CDS |
| GTTGCAGCTAAAGAGGTATC+TGG | 0.442534 | 7.4:-52616370 | MS.gene043706:CDS |
| GGACCACATGTTAGACTCTC+AGG | 0.469882 | 7.4:-52615468 | MS.gene043706:CDS |
| TATTTGCAGGTGTTAAATGA+AGG | 0.472581 | 7.4:-52615531 | MS.gene043706:CDS |
| TGCAACTTACCAGAAGAAAT+CGG | 0.484603 | 7.4:+52615953 | None:intergenic |
| TGAAGTTGAGAAATTGCAAA+AGG | 0.487851 | 7.4:-52616278 | MS.gene043706:CDS |
| TCTAAAGATGTGAACAATGT+AGG | 0.490187 | 7.4:+52615362 | None:intergenic |
| GGCAAAATATGGTTTGAAAA+GGG | 0.493730 | 7.4:-52616526 | MS.gene043706:CDS |
| ATATATCTAAAGACTCCAAA+TGG | 0.494837 | 7.4:-52616583 | MS.gene043706:CDS |
| TGTTGTCATGCGTGCATCAT+CGG | 0.503247 | 7.4:-52615983 | MS.gene043706:CDS |
| TTAAATTTGGTAAATAGTGA+TGG | 0.506736 | 7.4:-52616547 | MS.gene043706:CDS |
| GAGGACAATAACTTGAAAGT+TGG | 0.523457 | 7.4:-52615426 | MS.gene043706:CDS |
| TTAGCTGCAACTCTTTGGAA+AGG | 0.537642 | 7.4:+52616382 | None:intergenic |
| CATATCTGAAAAGCACAAGA+TGG | 0.540339 | 7.4:+52616464 | None:intergenic |
| CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7.4:+52615994 | None:intergenic |
| CCATTGCTTCCAATTTCACA+TGG | 0.553545 | 7.4:+52616307 | None:intergenic |
| ATGTTAGACTCTCAGGTGGA+TGG | 0.557800 | 7.4:-52615461 | MS.gene043706:CDS |
| CTTGCTCAAAATCTTCATGA+AGG | 0.562390 | 7.4:-52617521 | MS.gene043706:CDS |
| CCATGTGAAATTGGAAGCAA+TGG | 0.565270 | 7.4:-52616307 | MS.gene043706:CDS |
| GAGTATCATTCTCTAGCTCA+TGG | 0.575939 | 7.4:-52616487 | MS.gene043706:CDS |
| TTTGTGGAGAAATATGGAGA+AGG | 0.578281 | 7.4:-52616619 | MS.gene043706:CDS |
| TTTGATTTGGATCAGAAGAG+AGG | 0.591832 | 7.4:-52615561 | MS.gene043706:CDS |
| TCTAACATGTGGTCCTGTAA+GGG | 0.599023 | 7.4:+52615476 | None:intergenic |
| TAGACTCTCAGGTGGATGGA+AGG | 0.601234 | 7.4:-52615457 | MS.gene043706:CDS |
| TGGTTGATGAAATTCAAAAG+AGG | 0.621012 | 7.4:+52616327 | None:intergenic |
| TGTCATGCGTGCATCATCGG+TGG | 0.653378 | 7.4:-52615980 | MS.gene043706:CDS |
| TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7.4:-52615445 | MS.gene043706:CDS |
| TGCACGCATGACAACAACAA+AGG | 0.693553 | 7.4:+52615990 | None:intergenic |
| CCACATGTTAGACTCTCAGG+TGG | 0.694586 | 7.4:-52615465 | MS.gene043706:CDS |
| CCACCTGAGAGTCTAACATG+TGG | 0.731917 | 7.4:+52615465 | None:intergenic |
| TGTCTATTACCAAACATACG+TGG | 0.737084 | 7.4:+52615585 | None:intergenic |
| CATGCTGACAGAGAGTCCAG+AGG | 0.757168 | 7.4:-52616241 | MS.gene043706:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAGGAAAGAAAA+TGG | + | chr7.4:52615652-52615671 | None:intergenic | 15.0% |
| !! | AATAATAGAATCTAAGTAAA+AGG | + | chr7.4:52615397-52615416 | None:intergenic | 15.0% |
| !! | ATTATCACATAAATGTTTAT+TGG | - | chr7.4:52617124-52617143 | MS.gene043706:intron | 15.0% |
| !! | TGAAAGAAAAGAAAAAATTA+AGG | + | chr7.4:52615663-52615682 | None:intergenic | 15.0% |
| !!! | AAAAATTAGAAAGTTTTTGT+TGG | + | chr7.4:52617232-52617251 | None:intergenic | 15.0% |
| !!! | CATTTGAGTTTTATATTTAA+GGG | - | chr7.4:52615775-52615794 | MS.gene043706:intron | 15.0% |
| !!! | TTTGTCCTTTTTTTTTTTAT+TGG | - | chr7.4:52617263-52617282 | MS.gene043706:intron | 15.0% |
| !! | AGAAACATTCAAAAAACTAT+GGG | - | chr7.4:52616060-52616079 | MS.gene043706:CDS | 20.0% |
| !! | ATAACTATCATGTATATTTG+TGG | + | chr7.4:52615947-52615966 | None:intergenic | 20.0% |
| !! | TAAGAAAAAAAAAATGCACA+TGG | - | chr7.4:52615745-52615764 | MS.gene043706:intron | 20.0% |
| !! | TATACATGATAGTTATCTAT+CGG | - | chr7.4:52615951-52615970 | MS.gene043706:intron | 20.0% |
| !! | TGAAAACTAAGTTATTATTG+TGG | - | chr7.4:52616149-52616168 | MS.gene043706:intron | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | chr7.4:52616320-52616339 | MS.gene043706:CDS | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | chr7.4:52616333-52616352 | MS.gene043706:CDS | 20.0% |
| !! | TTATGTGATAATATCTGATT+TGG | + | chr7.4:52617116-52617135 | None:intergenic | 20.0% |
| !! | TTCTGCCAATAAAAAAAAAA+AGG | + | chr7.4:52617271-52617290 | None:intergenic | 20.0% |
| !! | TTTCAACAAGTAATTAACTT+GGG | - | chr7.4:52615678-52615697 | MS.gene043706:intron | 20.0% |
| !!! | AATAACTTAGTTTTCAAATC+TGG | + | chr7.4:52616145-52616164 | None:intergenic | 20.0% |
| !!! | GCAATTTTTTTTTTCTTCAA+AGG | - | chr7.4:52615797-52615816 | MS.gene043706:intron | 20.0% |
| !!! | GCATTTGAGTTTTATATTTA+AGG | - | chr7.4:52615774-52615793 | MS.gene043706:intron | 20.0% |
| !!! | TTTTTTCTTATAATATGGGA+CGG | + | chr7.4:52615735-52615754 | None:intergenic | 20.0% |
| ! | AAAAAGTTTGTGGAGAAATA+TGG | - | chr7.4:52616255-52616274 | MS.gene043706:CDS | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.4:52616297-52616316 | MS.gene043706:CDS | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+CGG | + | chr7.4:52615343-52615362 | None:intergenic | 25.0% |
| ! | CTTTCAACAAGTAATTAACT+TGG | - | chr7.4:52615677-52615696 | MS.gene043706:intron | 25.0% |
| ! | GAAAGGATAATTTATCTCTA+AGG | + | chr7.4:52616484-52616503 | None:intergenic | 25.0% |
| ! | GAGAAACATTCAAAAAACTA+TGG | - | chr7.4:52616059-52616078 | MS.gene043706:CDS | 25.0% |
| ! | TAAATAGTGATGGCAAAATA+TGG | - | chr7.4:52616343-52616362 | MS.gene043706:CDS | 25.0% |
| ! | TCTATCATAAAACACATTAG+TGG | + | chr7.4:52615852-52615871 | None:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | chr7.4:52616794-52616813 | None:intergenic | 25.0% |
| ! | TGTTAACATAAATCTTTAGC+AGG | - | chr7.4:52616726-52616745 | MS.gene043706:intron | 25.0% |
| ! | TTATATCATGCATGCTAATT+TGG | - | chr7.4:52616209-52616228 | MS.gene043706:intron | 25.0% |
| !! | AATTAACTTGGGTAAGATAT+TGG | - | chr7.4:52615689-52615708 | MS.gene043706:intron | 25.0% |
| !! | TGAAAAAACTTCTCTTTTTG+AGG | - | chr7.4:52616437-52616456 | MS.gene043706:CDS | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | chr7.4:52616793-52616812 | MS.gene043706:intron | 25.0% |
| !!! | ATCTGATTTGGATAATTGTT+AGG | + | chr7.4:52617104-52617123 | None:intergenic | 25.0% |
| !!! | CTATCGGATTTACTTTTTTT+GGG | - | chr7.4:52615967-52615986 | MS.gene043706:CDS | 25.0% |
| !!! | TATTTCTCCACAAACTTTTT+TGG | + | chr7.4:52616255-52616274 | None:intergenic | 25.0% |
| !!! | TCTATCGGATTTACTTTTTT+TGG | - | chr7.4:52615966-52615985 | MS.gene043706:CDS | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | chr7.4:52616358-52616377 | MS.gene043706:CDS | 30.0% | |
| ACAATTTGTGTTGTCATTGT+CGG | + | chr7.4:52617548-52617567 | None:intergenic | 30.0% | |
| ACTACAAGATGTGTATTTAG+AGG | - | chr7.4:52616011-52616030 | MS.gene043706:CDS | 30.0% | |
| ATTATCTTGAAAAAGCGGAT+TGG | + | chr7.4:52615338-52615357 | None:intergenic | 30.0% | |
| CTACAAGATGTGTATTTAGA+GGG | - | chr7.4:52616012-52616031 | MS.gene043706:CDS | 30.0% | |
| GATGATACCAAAAAAGTTTG+TGG | - | chr7.4:52616245-52616264 | MS.gene043706:CDS | 30.0% | |
| GGAAAGAAAATGGTTCAAAT+TGG | + | chr7.4:52615642-52615661 | None:intergenic | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | chr7.4:52616354-52616373 | MS.gene043706:CDS | 30.0% | |
| GTTAAAAGTCTCACATTACT+TGG | - | chr7.4:52616181-52616200 | MS.gene043706:intron | 30.0% | |
| TAGAGGGAATTAGTGATATT+GGG | - | chr7.4:52616028-52616047 | MS.gene043706:CDS | 30.0% | |
| TATTTGCAGGTGTTAAATGA+AGG | - | chr7.4:52617349-52617368 | MS.gene043706:intron | 30.0% | |
| TCTAAAGATGTGAACAATGT+AGG | + | chr7.4:52617521-52617540 | None:intergenic | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | chr7.4:52616602-52616621 | MS.gene043706:CDS | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | chr7.4:52616353-52616372 | MS.gene043706:CDS | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | chr7.4:52617306-52617325 | MS.gene043706:intron | 30.0% | |
| TTAGAGGGAATTAGTGATAT+TGG | - | chr7.4:52616027-52616046 | MS.gene043706:CDS | 30.0% | |
| TTGAGTTAGATTCTTTGTTC+AGG | - | chr7.4:52615432-52615451 | MS.gene043706:CDS | 30.0% | |
| TTTCATCAACCATGTGAAAT+TGG | - | chr7.4:52616564-52616583 | MS.gene043706:CDS | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | chr7.4:52616315-52616334 | None:intergenic | 30.0% |
| !! | TGGTTGATGAAATTCAAAAG+AGG | + | chr7.4:52616556-52616575 | None:intergenic | 30.0% |
| AAGAATGTCACAAGACTTGT+TGG | - | chr7.4:52615555-52615574 | MS.gene043706:CDS | 35.0% | |
| ACATTCAAAAAACTATGGGC+TGG | - | chr7.4:52616064-52616083 | MS.gene043706:CDS | 35.0% | |
| AGAGGGAATTAGTGATATTG+GGG | - | chr7.4:52616029-52616048 | MS.gene043706:CDS | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | - | chr7.4:52617356-52617375 | MS.gene043706:intron | 35.0% | |
| ATTTGTAGCCCAATGATACT+AGG | - | chr7.4:52615884-52615903 | MS.gene043706:intron | 35.0% | |
| CAGAATATACCACGTATGTT+TGG | - | chr7.4:52617286-52617305 | MS.gene043706:intron | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | chr7.4:52615359-52615378 | MS.gene043706:CDS | 35.0% | |
| GACACAAAATTGTATACCTC+TGG | + | chr7.4:52616658-52616677 | None:intergenic | 35.0% | |
| GAGGACAATAACTTGAAAGT+TGG | - | chr7.4:52617454-52617473 | MS.gene043706:intron | 35.0% | |
| GGATAATTGTTAGGACCAAT+TGG | + | chr7.4:52617095-52617114 | None:intergenic | 35.0% | |
| GGTAAGTTGCAAAGAAAGTT+TGG | - | chr7.4:52616939-52616958 | MS.gene043706:intron | 35.0% | |
| GTATCATTGGGCTACAAATT+TGG | + | chr7.4:52615883-52615902 | None:intergenic | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | - | chr7.4:52617077-52617096 | MS.gene043706:intron | 35.0% | |
| TGCAACTTACCAGAAGAAAT+CGG | + | chr7.4:52616930-52616949 | None:intergenic | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | + | chr7.4:52617298-52617317 | None:intergenic | 35.0% | |
| TTACTCATCTATGTCGCTAA+TGG | - | chr7.4:52615608-52615627 | MS.gene043706:intron | 35.0% | |
| TTAGGACCAATTGGTATCAA+CGG | + | chr7.4:52617086-52617105 | None:intergenic | 35.0% | |
| TTTCTTATAATATGGGACGG+AGG | + | chr7.4:52615732-52615751 | None:intergenic | 35.0% | |
| TTTGTAGCCCAATGATACTA+GGG | - | chr7.4:52615885-52615904 | MS.gene043706:intron | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | - | chr7.4:52616261-52616280 | MS.gene043706:CDS | 35.0% | |
| ! | ACTTGTTGGTCATAGTTTGT+GGG | - | chr7.4:52615569-52615588 | MS.gene043706:CDS | 35.0% |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | chr7.4:52616419-52616438 | None:intergenic | 35.0% |
| ! | GTTGTAATTTTCTCAGCAGT+AGG | + | chr7.4:52616832-52616851 | None:intergenic | 35.0% |
| !! | ACTTAGTTTTCAAATCTGGC+CGG | + | chr7.4:52616141-52616160 | None:intergenic | 35.0% |
| !! | TTTGATTTGGATCAGAAGAG+AGG | - | chr7.4:52617319-52617338 | MS.gene043706:intron | 35.0% |
| !! | TTTTTGGGAAAACGCACATT+CGG | - | chr7.4:52615982-52616001 | MS.gene043706:CDS | 35.0% |
| AGAAACGCCCTAGTATCATT+GGG | + | chr7.4:52615895-52615914 | None:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | chr7.4:52616307-52616326 | MS.gene043706:CDS | 40.0% | |
| AGCAGCCTGTTTACTCAATT+CGG | - | chr7.4:52616087-52616106 | MS.gene043706:intron | 40.0% | |
| ATCCTGATTAGGAACTTTGC+AGG | + | chr7.4:52617382-52617401 | None:intergenic | 40.0% | |
| CCATGTGAAATTGGAAGCAA+TGG | - | chr7.4:52616573-52616592 | MS.gene043706:CDS | 40.0% | |
| CCATTGCTTCCAATTTCACA+TGG | + | chr7.4:52616576-52616595 | None:intergenic | 40.0% | |
| GAGAGGAGATGTTTATTTGC+AGG | - | chr7.4:52617336-52617355 | MS.gene043706:intron | 40.0% | |
| GAGGGAATTAGTGATATTGG+GGG | - | chr7.4:52616030-52616049 | MS.gene043706:CDS | 40.0% | |
| TAGGACCAATTGGTATCAAC+GGG | + | chr7.4:52617085-52617104 | None:intergenic | 40.0% | |
| TCATTGGGCTACAAATTTGG+TGG | + | chr7.4:52615880-52615899 | None:intergenic | 40.0% | |
| TCTAACATGTGGTCCTGTAA+GGG | + | chr7.4:52617407-52617426 | None:intergenic | 40.0% | |
| TGGTGCCTTAGAGATATTGA+GGG | + | chr7.4:52615927-52615946 | None:intergenic | 40.0% | |
| ! | ATACTAGGGCGTTTCTCTTT+AGG | - | chr7.4:52615899-52615918 | MS.gene043706:intron | 40.0% |
| ! | GAGTATCATTCTCTAGCTCA+TGG | - | chr7.4:52616393-52616412 | MS.gene043706:CDS | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+AGG | + | chr7.4:52616501-52616520 | None:intergenic | 40.0% |
| ! | TTGGTCATAGTTTGTGGGTT+AGG | - | chr7.4:52615574-52615593 | MS.gene043706:CDS | 40.0% |
| !! | GACTTGTTGGTCATAGTTTG+TGG | - | chr7.4:52615568-52615587 | MS.gene043706:CDS | 40.0% |
| !! | TTGGCTTGGACAAGTTAGTT+CGG | - | chr7.4:52616115-52616134 | MS.gene043706:intron | 40.0% |
| ATGTTAGACTCTCAGGTGGA+TGG | - | chr7.4:52617419-52617438 | MS.gene043706:intron | 45.0% | |
| CCAAAGAGTTGCAGCTAAAG+AGG | - | chr7.4:52616503-52616522 | MS.gene043706:CDS | 45.0% | |
| CCTCTTTAGCTGCAACTCTT+TGG | + | chr7.4:52616506-52616525 | None:intergenic | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | chr7.4:52616889-52616908 | None:intergenic | 45.0% | |
| CTAATCAGGATGACCCTTAC+AGG | - | chr7.4:52617391-52617410 | MS.gene043706:intron | 45.0% | |
| CTATGTCGCTAATGGCTTCA+TGG | - | chr7.4:52615616-52615635 | MS.gene043706:intron | 45.0% | |
| CTGTAAGGGTCATCCTGATT+AGG | + | chr7.4:52617393-52617412 | None:intergenic | 45.0% | |
| GAGAAACGCCCTAGTATCAT+TGG | + | chr7.4:52615896-52615915 | None:intergenic | 45.0% | |
| GGTGCCTTAGAGATATTGAG+GGG | + | chr7.4:52615926-52615945 | None:intergenic | 45.0% | |
| GTCTAACATGTGGTCCTGTA+AGG | + | chr7.4:52617408-52617427 | None:intergenic | 45.0% | |
| GTGCCTTAGAGATATTGAGG+GGG | + | chr7.4:52615925-52615944 | None:intergenic | 45.0% | |
| GTGGTGCCTTAGAGATATTG+AGG | + | chr7.4:52615928-52615947 | None:intergenic | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | chr7.4:52616893-52616912 | None:intergenic | 45.0% | |
| TGTTGTCATGCGTGCATCAT+CGG | - | chr7.4:52616897-52616916 | MS.gene043706:intron | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | chr7.4:52616096-52616115 | MS.gene043706:intron | 45.0% | |
| ! | AACTACGTATGCACTGACGA+AGG | - | chr7.4:52616969-52616988 | MS.gene043706:intron | 45.0% |
| ! | ACTAACTTGTCCAAGCCAAG+TGG | + | chr7.4:52616114-52616133 | None:intergenic | 45.0% |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | chr7.4:52616113-52616132 | None:intergenic | 45.0% |
| !! | GTTGCAGCTAAAGAGGTATC+TGG | - | chr7.4:52616510-52616529 | MS.gene043706:CDS | 45.0% |
| !!! | ATTTTTTTTTTCTTATAATA+TGG | + | chr7.4:52615740-52615759 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTCTTATAATAT+GGG | + | chr7.4:52615739-52615758 | None:intergenic | 5.0% |
| AGGCCCCCTCAATATCTCTA+AGG | - | chr7.4:52615919-52615938 | MS.gene043706:intron | 50.0% | |
| CCACATGTTAGACTCTCAGG+TGG | - | chr7.4:52617415-52617434 | MS.gene043706:intron | 50.0% | |
| CCACCTGAGAGTCTAACATG+TGG | + | chr7.4:52617418-52617437 | None:intergenic | 50.0% | |
| CTTGGACAAGTTAGTTCGGC+CGG | - | chr7.4:52616119-52616138 | MS.gene043706:intron | 50.0% | |
| GGACCACATGTTAGACTCTC+AGG | - | chr7.4:52617412-52617431 | MS.gene043706:intron | 50.0% | |
| GGCCTGCAAAGTTCCTAATC+AGG | - | chr7.4:52617377-52617396 | MS.gene043706:intron | 50.0% | |
| GTGGGCCGAATTGAGTAAAC+AGG | + | chr7.4:52616095-52616114 | None:intergenic | 50.0% | |
| TAGACTCTCAGGTGGATGGA+AGG | - | chr7.4:52617423-52617442 | MS.gene043706:intron | 50.0% | |
| !! | GGTGGAACACCGATTTCTTC+TGG | - | chr7.4:52616918-52616937 | MS.gene043706:intron | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | chr7.4:52617435-52617454 | MS.gene043706:intron | 50.0% |
| CATGCTGACAGAGAGTCCAG+AGG | - | chr7.4:52616639-52616658 | MS.gene043706:intron | 55.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | - | chr7.4:52616101-52616120 | MS.gene043706:intron | 55.0% | |
| TGTCATGCGTGCATCATCGG+TGG | - | chr7.4:52616900-52616919 | MS.gene043706:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52615308 | 52617594 | 52615308 | ID=MS.gene043706 |
| chr7.4 | mRNA | 52615308 | 52617594 | 52615308 | ID=MS.gene043706.t1;Parent=MS.gene043706 |
| chr7.4 | exon | 52617514 | 52617594 | 52617514 | ID=MS.gene043706.t1.exon1;Parent=MS.gene043706.t1 |
| chr7.4 | CDS | 52617514 | 52617594 | 52617514 | ID=cds.MS.gene043706.t1;Parent=MS.gene043706.t1 |
| chr7.4 | exon | 52616242 | 52616656 | 52616242 | ID=MS.gene043706.t1.exon2;Parent=MS.gene043706.t1 |
| chr7.4 | CDS | 52616242 | 52616656 | 52616242 | ID=cds.MS.gene043706.t1;Parent=MS.gene043706.t1 |
| chr7.4 | exon | 52615963 | 52616087 | 52615963 | ID=MS.gene043706.t1.exon3;Parent=MS.gene043706.t1 |
| chr7.4 | CDS | 52615963 | 52616087 | 52615963 | ID=cds.MS.gene043706.t1;Parent=MS.gene043706.t1 |
| chr7.4 | exon | 52615308 | 52615613 | 52615308 | ID=MS.gene043706.t1.exon4;Parent=MS.gene043706.t1 |
| chr7.4 | CDS | 52615308 | 52615613 | 52615308 | ID=cds.MS.gene043706.t1;Parent=MS.gene043706.t1 |
| Gene Sequence |
| Protein sequence |
