Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043707.t1 | XP_003622663.1 | 82 | 305 | 52 | 3 | 1 | 304 | 1 | 303 | 2.20E-140 | 508.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043707.t1 | Q8L3W1 | 27.8 | 338 | 178 | 7 | 13 | 291 | 6 | 336 | 2.8e-27 | 124.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043707.t1 | G7KVV4 | 82.0 | 305 | 52 | 3 | 1 | 304 | 1 | 303 | 1.6e-140 | 508.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043707.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043707.t1 | MTR_7g050560 | 81.967 | 305 | 52 | 3 | 1 | 304 | 1 | 303 | 0.0 | 517 |
| MS.gene043707.t1 | MTR_7g050590 | 72.109 | 294 | 64 | 4 | 28 | 304 | 1 | 293 | 4.84e-155 | 435 |
| MS.gene043707.t1 | MTR_7g050580 | 68.025 | 319 | 71 | 4 | 1 | 304 | 1 | 303 | 4.70e-149 | 421 |
| MS.gene043707.t1 | MTR_3g098790 | 65.204 | 319 | 89 | 3 | 1 | 304 | 1 | 312 | 6.49e-148 | 418 |
| MS.gene043707.t1 | MTR_7g050710 | 64.798 | 321 | 95 | 3 | 1 | 304 | 1 | 320 | 6.12e-147 | 416 |
| MS.gene043707.t1 | MTR_7g050720 | 58.228 | 316 | 105 | 6 | 5 | 293 | 2 | 317 | 1.20e-122 | 354 |
| MS.gene043707.t1 | MTR_8g103940 | 37.459 | 307 | 154 | 10 | 11 | 291 | 37 | 331 | 5.98e-53 | 181 |
| MS.gene043707.t1 | MTR_1g035460 | 36.242 | 298 | 145 | 7 | 28 | 291 | 1 | 287 | 1.21e-51 | 175 |
| MS.gene043707.t1 | MTR_1g108780 | 34.708 | 291 | 149 | 9 | 29 | 291 | 13 | 290 | 1.65e-47 | 165 |
| MS.gene043707.t1 | MTR_7g050640 | 64.602 | 113 | 40 | 0 | 1 | 113 | 1 | 113 | 3.16e-45 | 149 |
| MS.gene043707.t1 | MTR_3g061320 | 35.430 | 302 | 157 | 9 | 3 | 290 | 2 | 279 | 9.27e-44 | 151 |
| MS.gene043707.t1 | MTR_3g061370 | 35.172 | 290 | 163 | 11 | 11 | 290 | 7 | 281 | 3.98e-41 | 144 |
| MS.gene043707.t1 | MTR_3g061350 | 34.448 | 299 | 172 | 11 | 1 | 290 | 1 | 284 | 6.15e-41 | 144 |
| MS.gene043707.t1 | MTR_5g044670 | 30.492 | 305 | 183 | 9 | 13 | 298 | 16 | 310 | 1.73e-40 | 144 |
| MS.gene043707.t1 | MTR_3g061340 | 34.247 | 292 | 155 | 10 | 10 | 290 | 9 | 274 | 1.08e-39 | 140 |
| MS.gene043707.t1 | MTR_3g061310 | 32.653 | 294 | 176 | 9 | 6 | 290 | 5 | 285 | 1.12e-38 | 138 |
| MS.gene043707.t1 | MTR_3g061330 | 54.054 | 111 | 48 | 2 | 1 | 111 | 1 | 108 | 8.61e-34 | 124 |
| MS.gene043707.t1 | MTR_6g043890 | 31.849 | 292 | 161 | 10 | 11 | 277 | 13 | 291 | 4.81e-33 | 124 |
| MS.gene043707.t1 | MTR_1g035570 | 31.915 | 282 | 172 | 6 | 22 | 291 | 14 | 287 | 1.14e-32 | 125 |
| MS.gene043707.t1 | MTR_4g119990 | 30.104 | 289 | 176 | 7 | 11 | 277 | 13 | 297 | 3.76e-31 | 120 |
| MS.gene043707.t1 | MTR_3g061290 | 54.902 | 102 | 44 | 1 | 10 | 111 | 9 | 108 | 7.02e-31 | 115 |
| MS.gene043707.t1 | MTR_1g035620 | 28.929 | 280 | 191 | 5 | 10 | 289 | 6 | 277 | 6.59e-30 | 117 |
| MS.gene043707.t1 | MTR_3g005490 | 26.855 | 283 | 165 | 7 | 13 | 294 | 21 | 262 | 1.44e-29 | 113 |
| MS.gene043707.t1 | MTR_1g035640 | 29.932 | 294 | 181 | 8 | 13 | 297 | 9 | 286 | 5.80e-29 | 115 |
| MS.gene043707.t1 | MTR_3g005480 | 28.179 | 291 | 152 | 8 | 13 | 294 | 21 | 263 | 1.34e-28 | 110 |
| MS.gene043707.t1 | MTR_1g050845 | 28.571 | 287 | 171 | 4 | 10 | 289 | 6 | 265 | 7.69e-28 | 114 |
| MS.gene043707.t1 | MTR_3g005420 | 28.169 | 284 | 169 | 7 | 13 | 294 | 289 | 539 | 6.65e-27 | 110 |
| MS.gene043707.t1 | MTR_3g005420 | 23.913 | 276 | 138 | 8 | 13 | 278 | 40 | 253 | 9.45e-16 | 77.8 |
| MS.gene043707.t1 | MTR_5g070440 | 27.113 | 284 | 172 | 7 | 13 | 294 | 21 | 271 | 1.03e-26 | 106 |
| MS.gene043707.t1 | MTR_3g061220 | 47.170 | 106 | 41 | 2 | 6 | 111 | 5 | 95 | 2.40e-25 | 98.2 |
| MS.gene043707.t1 | MTR_1g021360 | 29.412 | 272 | 168 | 6 | 24 | 278 | 193 | 457 | 3.64e-25 | 105 |
| MS.gene043707.t1 | MTR_1g021360 | 29.787 | 141 | 95 | 2 | 11 | 148 | 24 | 163 | 1.97e-11 | 64.7 |
| MS.gene043707.t1 | MTR_1g021410 | 26.154 | 325 | 187 | 9 | 14 | 290 | 23 | 342 | 3.36e-24 | 100 |
| MS.gene043707.t1 | MTR_3g005495 | 30.827 | 266 | 137 | 9 | 13 | 278 | 243 | 461 | 2.21e-23 | 100 |
| MS.gene043707.t1 | MTR_3g005495 | 38.372 | 86 | 53 | 0 | 29 | 114 | 29 | 114 | 1.33e-17 | 83.2 |
| MS.gene043707.t1 | MTR_6g061070 | 26.625 | 323 | 185 | 12 | 7 | 290 | 12 | 321 | 8.74e-23 | 98.2 |
| MS.gene043707.t1 | MTR_1g021435 | 24.854 | 342 | 195 | 7 | 6 | 289 | 15 | 352 | 4.69e-22 | 95.1 |
| MS.gene043707.t1 | MTR_1g021400 | 25.893 | 336 | 197 | 10 | 11 | 297 | 28 | 360 | 6.88e-22 | 94.7 |
| MS.gene043707.t1 | MTR_3g005460 | 26.102 | 295 | 173 | 9 | 11 | 294 | 260 | 520 | 7.65e-22 | 95.9 |
| MS.gene043707.t1 | MTR_3g005460 | 37.255 | 102 | 64 | 0 | 13 | 114 | 25 | 126 | 2.18e-19 | 88.6 |
| MS.gene043707.t1 | MTR_4g068320 | 32.727 | 165 | 107 | 2 | 13 | 173 | 6 | 170 | 7.77e-22 | 95.1 |
| MS.gene043707.t1 | MTR_4g068320 | 30.827 | 133 | 86 | 2 | 164 | 296 | 267 | 393 | 7.18e-13 | 68.9 |
| MS.gene043707.t1 | MTR_1g034240 | 41.414 | 99 | 58 | 0 | 13 | 111 | 7 | 105 | 1.19e-20 | 92.0 |
| MS.gene043707.t1 | MTR_1g034240 | 29.008 | 131 | 87 | 2 | 167 | 297 | 274 | 398 | 1.96e-12 | 67.8 |
| MS.gene043707.t1 | MTR_1g035650 | 31.122 | 196 | 111 | 3 | 10 | 185 | 6 | 197 | 8.86e-20 | 85.9 |
| MS.gene043707.t1 | MTR_1g021380 | 25.000 | 324 | 187 | 8 | 16 | 292 | 20 | 334 | 1.30e-19 | 88.2 |
| MS.gene043707.t1 | MTR_1g035480 | 36.429 | 140 | 78 | 3 | 9 | 148 | 13 | 141 | 7.89e-19 | 82.8 |
| MS.gene043707.t1 | MTR_1g035440 | 40.741 | 108 | 57 | 2 | 11 | 114 | 13 | 117 | 2.64e-18 | 82.8 |
| MS.gene043707.t1 | MTR_1g021330 | 24.528 | 318 | 176 | 7 | 26 | 283 | 39 | 352 | 4.39e-18 | 84.0 |
| MS.gene043707.t1 | MTR_1g033740 | 30.994 | 171 | 104 | 4 | 9 | 177 | 18 | 176 | 3.22e-17 | 78.6 |
| MS.gene043707.t1 | MTR_1g034210 | 38.384 | 99 | 59 | 1 | 13 | 111 | 7 | 103 | 3.17e-16 | 78.2 |
| MS.gene043707.t1 | MTR_1g034210 | 38.384 | 99 | 59 | 1 | 13 | 111 | 7 | 103 | 4.99e-16 | 78.2 |
| MS.gene043707.t1 | MTR_3g005440 | 36.364 | 88 | 56 | 0 | 27 | 114 | 34 | 121 | 6.20e-16 | 78.2 |
| MS.gene043707.t1 | MTR_3g005440 | 33.945 | 109 | 71 | 1 | 7 | 114 | 235 | 343 | 4.02e-14 | 72.8 |
| MS.gene043707.t1 | MTR_1g035500 | 33.117 | 154 | 90 | 4 | 7 | 160 | 19 | 159 | 1.21e-15 | 73.9 |
| MS.gene043707.t1 | MTR_3g005420 | 23.913 | 276 | 138 | 8 | 13 | 278 | 21 | 234 | 1.28e-15 | 77.4 |
| MS.gene043707.t1 | MTR_1g021350 | 25.000 | 304 | 184 | 11 | 14 | 283 | 22 | 315 | 1.97e-15 | 76.3 |
| MS.gene043707.t1 | MTR_1g035510 | 35.659 | 129 | 68 | 4 | 28 | 156 | 1 | 114 | 1.22e-14 | 72.0 |
| MS.gene043707.t1 | MTR_1g035470 | 35.659 | 129 | 69 | 5 | 28 | 156 | 1 | 115 | 2.95e-14 | 69.3 |
| MS.gene043707.t1 | MTR_1g035520 | 43.820 | 89 | 47 | 2 | 28 | 116 | 87 | 172 | 1.00e-13 | 71.2 |
| MS.gene043707.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 5.32e-13 | 68.6 |
| MS.gene043707.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 5.93e-13 | 68.6 |
| MS.gene043707.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 9.31e-13 | 68.6 |
| MS.gene043707.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 9.52e-13 | 68.6 |
| MS.gene043707.t1 | MTR_1g021320 | 39.823 | 113 | 61 | 3 | 171 | 283 | 489 | 594 | 1.87e-12 | 68.2 |
| MS.gene043707.t1 | MTR_1g021320 | 28.859 | 149 | 97 | 2 | 11 | 153 | 23 | 168 | 3.64e-12 | 67.4 |
| MS.gene043707.t1 | MTR_1g021320 | 33.333 | 90 | 59 | 1 | 14 | 103 | 184 | 272 | 3.82e-11 | 64.3 |
| MS.gene043707.t1 | MTR_1g021290 | 26.897 | 145 | 102 | 2 | 14 | 155 | 157 | 300 | 9.53e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043707.t1 | AT4G01580 | 41.739 | 115 | 66 | 1 | 3 | 116 | 19 | 133 | 3.55e-24 | 97.4 |
| MS.gene043707.t1 | AT1G49475 | 40.323 | 124 | 71 | 2 | 12 | 133 | 33 | 155 | 4.24e-24 | 97.1 |
| MS.gene043707.t1 | AT3G18990 | 44.444 | 99 | 55 | 0 | 13 | 111 | 6 | 104 | 7.16e-24 | 99.8 |
| MS.gene043707.t1 | AT3G18990 | 44.444 | 99 | 55 | 0 | 13 | 111 | 6 | 104 | 1.07e-23 | 99.8 |
| MS.gene043707.t1 | AT3G18960 | 40.000 | 115 | 68 | 1 | 3 | 116 | 19 | 133 | 1.53e-22 | 93.2 |
| MS.gene043707.t1 | AT3G18960 | 40.000 | 115 | 68 | 1 | 3 | 116 | 19 | 133 | 1.86e-22 | 93.2 |
| MS.gene043707.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 29 | 116 | 9 | 96 | 2.49e-18 | 81.3 |
| MS.gene043707.t1 | AT3G53310 | 34.314 | 102 | 65 | 2 | 3 | 104 | 2 | 101 | 2.90e-12 | 66.2 |
Find 0 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAGGAAAGAAAA+TGG | + | 50840:3153-3172 | MS.gene043707:intergenic | 15.0% |
| !! | AATAATAGAATCTAAGTAAA+AGG | + | 50840:2898-2917 | MS.gene043707:intergenic | 15.0% |
| !! | ATTATCACATAAATGTTTAT+TGG | - | 50840:4625-4644 | MS.gene043707:intron | 15.0% |
| !! | TGAAAGAAAAGAAAAAATTA+AGG | + | 50840:3164-3183 | MS.gene043707:intergenic | 15.0% |
| !!! | AAAAATTAGAAAGTTTTTGT+TGG | + | 50840:4733-4752 | MS.gene043707:intergenic | 15.0% |
| !!! | CATTTGAGTTTTATATTTAA+GGG | - | 50840:3276-3295 | MS.gene043707:intron | 15.0% |
| !!! | TTTGTCCTTTTTTTTTTTAT+TGG | - | 50840:4764-4783 | MS.gene043707:intron | 15.0% |
| !! | AGAAACATTCAAAAAACTAT+GGG | - | 50840:3561-3580 | MS.gene043707:intron | 20.0% |
| !! | ATAACTATCATGTATATTTG+TGG | + | 50840:3448-3467 | MS.gene043707:intergenic | 20.0% |
| !! | TAAGAAAAAAAAAATGCACA+TGG | - | 50840:3246-3265 | MS.gene043707:intron | 20.0% |
| !! | TATACATGATAGTTATCTAT+CGG | - | 50840:3452-3471 | MS.gene043707:CDS | 20.0% |
| !! | TGAAAACTAAGTTATTATTG+TGG | - | 50840:3650-3669 | MS.gene043707:intron | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | 50840:3821-3840 | MS.gene043707:CDS | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | 50840:3834-3853 | MS.gene043707:CDS | 20.0% |
| !! | TTATGTGATAATATCTGATT+TGG | + | 50840:4617-4636 | MS.gene043707:intergenic | 20.0% |
| !! | TTCTGCCAATAAAAAAAAAA+AGG | + | 50840:4772-4791 | MS.gene043707:intergenic | 20.0% |
| !! | TTTCAACAAGTAATTAACTT+GGG | - | 50840:3179-3198 | MS.gene043707:intron | 20.0% |
| !!! | AATAACTTAGTTTTCAAATC+TGG | + | 50840:3646-3665 | MS.gene043707:intergenic | 20.0% |
| !!! | GCAATTTTTTTTTTCTTCAA+AGG | - | 50840:3298-3317 | MS.gene043707:intron | 20.0% |
| !!! | GCATTTGAGTTTTATATTTA+AGG | - | 50840:3275-3294 | MS.gene043707:intron | 20.0% |
| !!! | TTTTTTCTTATAATATGGGA+CGG | + | 50840:3236-3255 | MS.gene043707:intergenic | 20.0% |
| ! | AAAAAGTTTGTGGAGAAATA+TGG | - | 50840:3756-3775 | MS.gene043707:CDS | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | 50840:3798-3817 | MS.gene043707:CDS | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+CGG | + | 50840:2844-2863 | MS.gene043707:intergenic | 25.0% |
| ! | CTTTCAACAAGTAATTAACT+TGG | - | 50840:3178-3197 | MS.gene043707:intron | 25.0% |
| ! | GAAAGGATAATTTATCTCTA+AGG | + | 50840:3985-4004 | MS.gene043707:intergenic | 25.0% |
| ! | GAGAAACATTCAAAAAACTA+TGG | - | 50840:3560-3579 | MS.gene043707:intron | 25.0% |
| ! | TAAATAGTGATGGCAAAATA+TGG | - | 50840:3844-3863 | MS.gene043707:CDS | 25.0% |
| ! | TCTATCATAAAACACATTAG+TGG | + | 50840:3353-3372 | MS.gene043707:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | 50840:4295-4314 | MS.gene043707:intergenic | 25.0% |
| ! | TGTTAACATAAATCTTTAGC+AGG | - | 50840:4227-4246 | MS.gene043707:intron | 25.0% |
| ! | TTATATCATGCATGCTAATT+TGG | - | 50840:3710-3729 | MS.gene043707:intron | 25.0% |
| !! | AATTAACTTGGGTAAGATAT+TGG | - | 50840:3190-3209 | MS.gene043707:intron | 25.0% |
| !! | TGAAAAAACTTCTCTTTTTG+AGG | - | 50840:3938-3957 | MS.gene043707:CDS | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | 50840:4294-4313 | MS.gene043707:intron | 25.0% |
| !!! | ATCTGATTTGGATAATTGTT+AGG | + | 50840:4605-4624 | MS.gene043707:intergenic | 25.0% |
| !!! | CTATCGGATTTACTTTTTTT+GGG | - | 50840:3468-3487 | MS.gene043707:CDS | 25.0% |
| !!! | TATTTCTCCACAAACTTTTT+TGG | + | 50840:3756-3775 | MS.gene043707:intergenic | 25.0% |
| !!! | TCTATCGGATTTACTTTTTT+TGG | - | 50840:3467-3486 | MS.gene043707:CDS | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | 50840:3859-3878 | MS.gene043707:CDS | 30.0% | |
| ACAATTTGTGTTGTCATTGT+CGG | + | 50840:5049-5068 | MS.gene043707:intergenic | 30.0% | |
| ACTACAAGATGTGTATTTAG+AGG | - | 50840:3512-3531 | MS.gene043707:CDS | 30.0% | |
| ATTATCTTGAAAAAGCGGAT+TGG | + | 50840:2839-2858 | MS.gene043707:intergenic | 30.0% | |
| CTACAAGATGTGTATTTAGA+GGG | - | 50840:3513-3532 | MS.gene043707:CDS | 30.0% | |
| GATGATACCAAAAAAGTTTG+TGG | - | 50840:3746-3765 | MS.gene043707:CDS | 30.0% | |
| GGAAAGAAAATGGTTCAAAT+TGG | + | 50840:3143-3162 | MS.gene043707:intergenic | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | 50840:3855-3874 | MS.gene043707:CDS | 30.0% | |
| GTTAAAAGTCTCACATTACT+TGG | - | 50840:3682-3701 | MS.gene043707:intron | 30.0% | |
| TAGAGGGAATTAGTGATATT+GGG | - | 50840:3529-3548 | MS.gene043707:CDS | 30.0% | |
| TATTTGCAGGTGTTAAATGA+AGG | - | 50840:4850-4869 | MS.gene043707:intron | 30.0% | |
| TCTAAAGATGTGAACAATGT+AGG | + | 50840:5022-5041 | MS.gene043707:intergenic | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | 50840:4103-4122 | MS.gene043707:CDS | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | 50840:3854-3873 | MS.gene043707:CDS | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | 50840:4807-4826 | MS.gene043707:intron | 30.0% | |
| TTAGAGGGAATTAGTGATAT+TGG | - | 50840:3528-3547 | MS.gene043707:CDS | 30.0% | |
| TTGAGTTAGATTCTTTGTTC+AGG | - | 50840:2933-2952 | MS.gene043707:CDS | 30.0% | |
| TTTCATCAACCATGTGAAAT+TGG | - | 50840:4065-4084 | MS.gene043707:CDS | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | 50840:3816-3835 | MS.gene043707:intergenic | 30.0% |
| !! | TGGTTGATGAAATTCAAAAG+AGG | + | 50840:4057-4076 | MS.gene043707:intergenic | 30.0% |
| AAGAATGTCACAAGACTTGT+TGG | - | 50840:3056-3075 | MS.gene043707:CDS | 35.0% | |
| ACATTCAAAAAACTATGGGC+TGG | - | 50840:3565-3584 | MS.gene043707:intron | 35.0% | |
| AGAGGGAATTAGTGATATTG+GGG | - | 50840:3530-3549 | MS.gene043707:CDS | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | - | 50840:4857-4876 | MS.gene043707:intron | 35.0% | |
| ATTTGTAGCCCAATGATACT+AGG | - | 50840:3385-3404 | MS.gene043707:intron | 35.0% | |
| CAGAATATACCACGTATGTT+TGG | - | 50840:4787-4806 | MS.gene043707:intron | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | 50840:2860-2879 | MS.gene043707:CDS | 35.0% | |
| GACACAAAATTGTATACCTC+TGG | + | 50840:4159-4178 | MS.gene043707:intergenic | 35.0% | |
| GAGGACAATAACTTGAAAGT+TGG | - | 50840:4955-4974 | MS.gene043707:intron | 35.0% | |
| GGATAATTGTTAGGACCAAT+TGG | + | 50840:4596-4615 | MS.gene043707:intergenic | 35.0% | |
| GGTAAGTTGCAAAGAAAGTT+TGG | - | 50840:4440-4459 | MS.gene043707:intron | 35.0% | |
| GTATCATTGGGCTACAAATT+TGG | + | 50840:3384-3403 | MS.gene043707:intergenic | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | - | 50840:4578-4597 | MS.gene043707:intron | 35.0% | |
| TGCAACTTACCAGAAGAAAT+CGG | + | 50840:4431-4450 | MS.gene043707:intergenic | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | + | 50840:4799-4818 | MS.gene043707:intergenic | 35.0% | |
| TTACTCATCTATGTCGCTAA+TGG | - | 50840:3109-3128 | MS.gene043707:intron | 35.0% | |
| TTAGGACCAATTGGTATCAA+CGG | + | 50840:4587-4606 | MS.gene043707:intergenic | 35.0% | |
| TTTCTTATAATATGGGACGG+AGG | + | 50840:3233-3252 | MS.gene043707:intergenic | 35.0% | |
| TTTGTAGCCCAATGATACTA+GGG | - | 50840:3386-3405 | MS.gene043707:intron | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | - | 50840:3762-3781 | MS.gene043707:CDS | 35.0% | |
| ! | ACTTGTTGGTCATAGTTTGT+GGG | - | 50840:3070-3089 | MS.gene043707:CDS | 35.0% |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | 50840:3920-3939 | MS.gene043707:intergenic | 35.0% |
| ! | GTTGTAATTTTCTCAGCAGT+AGG | + | 50840:4333-4352 | MS.gene043707:intergenic | 35.0% |
| !! | ACTTAGTTTTCAAATCTGGC+CGG | + | 50840:3642-3661 | MS.gene043707:intergenic | 35.0% |
| !! | TTTGATTTGGATCAGAAGAG+AGG | - | 50840:4820-4839 | MS.gene043707:intron | 35.0% |
| !! | TTTTTGGGAAAACGCACATT+CGG | - | 50840:3483-3502 | MS.gene043707:CDS | 35.0% |
| AGAAACGCCCTAGTATCATT+GGG | + | 50840:3396-3415 | MS.gene043707:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | 50840:3808-3827 | MS.gene043707:CDS | 40.0% | |
| AGCAGCCTGTTTACTCAATT+CGG | - | 50840:3588-3607 | MS.gene043707:intron | 40.0% | |
| ATCCTGATTAGGAACTTTGC+AGG | + | 50840:4883-4902 | MS.gene043707:intergenic | 40.0% | |
| CCATGTGAAATTGGAAGCAA+TGG | - | 50840:4074-4093 | MS.gene043707:CDS | 40.0% | |
| CCATTGCTTCCAATTTCACA+TGG | + | 50840:4077-4096 | MS.gene043707:intergenic | 40.0% | |
| GAGAGGAGATGTTTATTTGC+AGG | - | 50840:4837-4856 | MS.gene043707:intron | 40.0% | |
| GAGGGAATTAGTGATATTGG+GGG | - | 50840:3531-3550 | MS.gene043707:CDS | 40.0% | |
| TAGGACCAATTGGTATCAAC+GGG | + | 50840:4586-4605 | MS.gene043707:intergenic | 40.0% | |
| TCATTGGGCTACAAATTTGG+TGG | + | 50840:3381-3400 | MS.gene043707:intergenic | 40.0% | |
| TCTAACATGTGGTCCTGTAA+GGG | + | 50840:4908-4927 | MS.gene043707:intergenic | 40.0% | |
| TGGTGCCTTAGAGATATTGA+GGG | + | 50840:3428-3447 | MS.gene043707:intergenic | 40.0% | |
| ! | ATACTAGGGCGTTTCTCTTT+AGG | - | 50840:3400-3419 | MS.gene043707:intron | 40.0% |
| ! | GAGTATCATTCTCTAGCTCA+TGG | - | 50840:3894-3913 | MS.gene043707:CDS | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+AGG | + | 50840:4002-4021 | MS.gene043707:intergenic | 40.0% |
| ! | TTGGTCATAGTTTGTGGGTT+AGG | - | 50840:3075-3094 | MS.gene043707:CDS | 40.0% |
| !! | GACTTGTTGGTCATAGTTTG+TGG | - | 50840:3069-3088 | MS.gene043707:CDS | 40.0% |
| !! | TTGGCTTGGACAAGTTAGTT+CGG | - | 50840:3616-3635 | MS.gene043707:intron | 40.0% |
| ATGTTAGACTCTCAGGTGGA+TGG | - | 50840:4920-4939 | MS.gene043707:intron | 45.0% | |
| CCAAAGAGTTGCAGCTAAAG+AGG | - | 50840:4004-4023 | MS.gene043707:CDS | 45.0% | |
| CCTCTTTAGCTGCAACTCTT+TGG | + | 50840:4007-4026 | MS.gene043707:intergenic | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | 50840:4390-4409 | MS.gene043707:intergenic | 45.0% | |
| CTAATCAGGATGACCCTTAC+AGG | - | 50840:4892-4911 | MS.gene043707:intron | 45.0% | |
| CTATGTCGCTAATGGCTTCA+TGG | - | 50840:3117-3136 | MS.gene043707:intron | 45.0% | |
| CTGTAAGGGTCATCCTGATT+AGG | + | 50840:4894-4913 | MS.gene043707:intergenic | 45.0% | |
| GAGAAACGCCCTAGTATCAT+TGG | + | 50840:3397-3416 | MS.gene043707:intergenic | 45.0% | |
| GGTGCCTTAGAGATATTGAG+GGG | + | 50840:3427-3446 | MS.gene043707:intergenic | 45.0% | |
| GTCTAACATGTGGTCCTGTA+AGG | + | 50840:4909-4928 | MS.gene043707:intergenic | 45.0% | |
| GTGCCTTAGAGATATTGAGG+GGG | + | 50840:3426-3445 | MS.gene043707:intergenic | 45.0% | |
| GTGGTGCCTTAGAGATATTG+AGG | + | 50840:3429-3448 | MS.gene043707:intergenic | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | 50840:4394-4413 | MS.gene043707:intergenic | 45.0% | |
| TGTTGTCATGCGTGCATCAT+CGG | - | 50840:4398-4417 | MS.gene043707:intron | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | 50840:3597-3616 | MS.gene043707:intron | 45.0% | |
| ! | AACTACGTATGCACTGACGA+AGG | - | 50840:4470-4489 | MS.gene043707:intron | 45.0% |
| ! | ACTAACTTGTCCAAGCCAAG+TGG | + | 50840:3615-3634 | MS.gene043707:intergenic | 45.0% |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | 50840:3614-3633 | MS.gene043707:intergenic | 45.0% |
| !! | GTTGCAGCTAAAGAGGTATC+TGG | - | 50840:4011-4030 | MS.gene043707:CDS | 45.0% |
| !!! | ATTTTTTTTTTCTTATAATA+TGG | + | 50840:3241-3260 | MS.gene043707:intergenic | 5.0% |
| !!! | TTTTTTTTTTCTTATAATAT+GGG | + | 50840:3240-3259 | MS.gene043707:intergenic | 5.0% |
| AGGCCCCCTCAATATCTCTA+AGG | - | 50840:3420-3439 | MS.gene043707:intron | 50.0% | |
| CCACATGTTAGACTCTCAGG+TGG | - | 50840:4916-4935 | MS.gene043707:intron | 50.0% | |
| CCACCTGAGAGTCTAACATG+TGG | + | 50840:4919-4938 | MS.gene043707:intergenic | 50.0% | |
| CTTGGACAAGTTAGTTCGGC+CGG | - | 50840:3620-3639 | MS.gene043707:intron | 50.0% | |
| GGACCACATGTTAGACTCTC+AGG | - | 50840:4913-4932 | MS.gene043707:intron | 50.0% | |
| GGCCTGCAAAGTTCCTAATC+AGG | - | 50840:4878-4897 | MS.gene043707:intron | 50.0% | |
| GTGGGCCGAATTGAGTAAAC+AGG | + | 50840:3596-3615 | MS.gene043707:intergenic | 50.0% | |
| TAGACTCTCAGGTGGATGGA+AGG | - | 50840:4924-4943 | MS.gene043707:intron | 50.0% | |
| !! | GGTGGAACACCGATTTCTTC+TGG | - | 50840:4419-4438 | MS.gene043707:intron | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | 50840:4936-4955 | MS.gene043707:intron | 50.0% |
| CATGCTGACAGAGAGTCCAG+AGG | - | 50840:4140-4159 | MS.gene043707:intron | 55.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | - | 50840:3602-3621 | MS.gene043707:intron | 55.0% | |
| TGTCATGCGTGCATCATCGG+TGG | - | 50840:4401-4420 | MS.gene043707:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50840 | gene | 2809 | 5081 | 2809 | ID=MS.gene043707 |
| 50840 | mRNA | 2809 | 5081 | 2809 | ID=MS.gene043707.t1;Parent=MS.gene043707 |
| 50840 | exon | 5001 | 5081 | 5001 | ID=MS.gene043707.t1.exon1;Parent=MS.gene043707.t1 |
| 50840 | CDS | 5001 | 5081 | 5001 | ID=cds.MS.gene043707.t1;Parent=MS.gene043707.t1 |
| 50840 | exon | 3729 | 4143 | 3729 | ID=MS.gene043707.t1.exon2;Parent=MS.gene043707.t1 |
| 50840 | CDS | 3729 | 4143 | 3729 | ID=cds.MS.gene043707.t1;Parent=MS.gene043707.t1 |
| 50840 | exon | 3450 | 3574 | 3450 | ID=MS.gene043707.t1.exon3;Parent=MS.gene043707.t1 |
| 50840 | CDS | 3450 | 3574 | 3450 | ID=cds.MS.gene043707.t1;Parent=MS.gene043707.t1 |
| 50840 | exon | 2809 | 3100 | 2809 | ID=MS.gene043707.t1.exon4;Parent=MS.gene043707.t1 |
| 50840 | CDS | 2809 | 3100 | 2809 | ID=cds.MS.gene043707.t1;Parent=MS.gene043707.t1 |
| Gene Sequence |
| Protein sequence |
