Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043708.t1 | XP_003622663.1 | 83.1 | 166 | 27 | 1 | 1 | 165 | 1 | 166 | 4.80E-73 | 283.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043708.t1 | Q8L3W1 | 43.4 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 2.0e-19 | 97.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043708.t1 | G7KVV4 | 83.1 | 166 | 27 | 1 | 1 | 165 | 1 | 166 | 3.5e-73 | 283.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043708.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043708.t1 | MTR_7g050560 | 83.133 | 166 | 27 | 1 | 1 | 165 | 1 | 166 | 5.53e-97 | 283 |
| MS.gene043708.t1 | MTR_7g050720 | 64.804 | 179 | 45 | 1 | 5 | 165 | 2 | 180 | 2.80e-77 | 233 |
| MS.gene043708.t1 | MTR_7g050710 | 63.128 | 179 | 50 | 2 | 1 | 164 | 1 | 178 | 1.90e-73 | 223 |
| MS.gene043708.t1 | MTR_7g050590 | 68.831 | 154 | 32 | 2 | 28 | 165 | 1 | 154 | 9.69e-72 | 218 |
| MS.gene043708.t1 | MTR_3g098790 | 61.667 | 180 | 47 | 3 | 1 | 165 | 1 | 173 | 1.54e-71 | 218 |
| MS.gene043708.t1 | MTR_7g050580 | 65.644 | 163 | 34 | 3 | 1 | 148 | 1 | 156 | 1.64e-66 | 205 |
| MS.gene043708.t1 | MTR_7g050640 | 64.602 | 113 | 40 | 0 | 1 | 113 | 1 | 113 | 4.18e-47 | 149 |
| MS.gene043708.t1 | MTR_3g061330 | 53.153 | 111 | 49 | 2 | 1 | 111 | 1 | 108 | 4.14e-35 | 123 |
| MS.gene043708.t1 | MTR_8g103940 | 51.485 | 101 | 49 | 0 | 11 | 111 | 37 | 137 | 5.22e-34 | 125 |
| MS.gene043708.t1 | MTR_3g061290 | 53.922 | 102 | 45 | 1 | 10 | 111 | 9 | 108 | 6.19e-32 | 113 |
| MS.gene043708.t1 | MTR_3g061310 | 50.000 | 106 | 51 | 1 | 6 | 111 | 5 | 108 | 5.83e-31 | 113 |
| MS.gene043708.t1 | MTR_3g061370 | 53.465 | 101 | 45 | 1 | 11 | 111 | 7 | 105 | 1.49e-30 | 112 |
| MS.gene043708.t1 | MTR_3g061320 | 49.541 | 109 | 53 | 1 | 3 | 111 | 2 | 108 | 2.98e-30 | 111 |
| MS.gene043708.t1 | MTR_3g061340 | 53.398 | 103 | 45 | 2 | 10 | 111 | 9 | 109 | 3.36e-30 | 111 |
| MS.gene043708.t1 | MTR_1g035460 | 55.814 | 86 | 38 | 0 | 28 | 113 | 1 | 86 | 1.08e-29 | 112 |
| MS.gene043708.t1 | MTR_3g061350 | 48.649 | 111 | 54 | 2 | 1 | 111 | 1 | 108 | 1.15e-28 | 107 |
| MS.gene043708.t1 | MTR_5g044670 | 43.434 | 99 | 56 | 0 | 13 | 111 | 16 | 114 | 1.18e-27 | 105 |
| MS.gene043708.t1 | MTR_1g108780 | 55.422 | 83 | 37 | 0 | 29 | 111 | 13 | 95 | 1.83e-27 | 106 |
| MS.gene043708.t1 | MTR_3g061220 | 46.226 | 106 | 42 | 2 | 6 | 111 | 5 | 95 | 1.48e-26 | 97.4 |
| MS.gene043708.t1 | MTR_6g043890 | 43.636 | 110 | 57 | 2 | 11 | 117 | 13 | 120 | 9.35e-25 | 98.2 |
| MS.gene043708.t1 | MTR_3g005480 | 34.400 | 125 | 74 | 2 | 13 | 137 | 21 | 137 | 9.92e-25 | 96.7 |
| MS.gene043708.t1 | MTR_4g119990 | 43.810 | 105 | 58 | 1 | 11 | 114 | 13 | 117 | 7.03e-23 | 93.6 |
| MS.gene043708.t1 | MTR_3g005490 | 33.929 | 112 | 71 | 1 | 13 | 124 | 21 | 129 | 2.51e-22 | 90.1 |
| MS.gene043708.t1 | MTR_1g034240 | 40.404 | 99 | 59 | 0 | 13 | 111 | 7 | 105 | 5.56e-22 | 91.3 |
| MS.gene043708.t1 | MTR_5g070440 | 36.275 | 102 | 65 | 0 | 13 | 114 | 21 | 122 | 9.46e-22 | 89.0 |
| MS.gene043708.t1 | MTR_1g035640 | 47.475 | 99 | 46 | 2 | 13 | 111 | 9 | 101 | 1.50e-21 | 90.5 |
| MS.gene043708.t1 | MTR_4g068320 | 31.818 | 154 | 101 | 2 | 13 | 162 | 6 | 159 | 2.84e-21 | 89.4 |
| MS.gene043708.t1 | MTR_1g050845 | 37.589 | 141 | 79 | 3 | 10 | 143 | 6 | 144 | 7.10e-21 | 89.0 |
| MS.gene043708.t1 | MTR_3g005460 | 36.275 | 102 | 65 | 0 | 13 | 114 | 25 | 126 | 1.29e-20 | 87.8 |
| MS.gene043708.t1 | MTR_3g005460 | 35.652 | 115 | 70 | 2 | 11 | 124 | 260 | 371 | 3.33e-19 | 84.0 |
| MS.gene043708.t1 | MTR_3g005495 | 39.216 | 102 | 62 | 0 | 13 | 114 | 243 | 344 | 5.20e-20 | 86.3 |
| MS.gene043708.t1 | MTR_3g005495 | 35.417 | 96 | 59 | 1 | 29 | 124 | 29 | 121 | 1.20e-18 | 82.0 |
| MS.gene043708.t1 | MTR_1g035650 | 39.216 | 102 | 60 | 1 | 10 | 111 | 6 | 105 | 5.92e-20 | 82.8 |
| MS.gene043708.t1 | MTR_1g035620 | 41.176 | 102 | 58 | 1 | 10 | 111 | 6 | 105 | 8.49e-20 | 85.1 |
| MS.gene043708.t1 | MTR_1g035480 | 35.714 | 140 | 79 | 3 | 9 | 148 | 13 | 141 | 1.05e-19 | 81.6 |
| MS.gene043708.t1 | MTR_1g035570 | 44.444 | 90 | 48 | 1 | 22 | 111 | 14 | 101 | 2.10e-19 | 84.0 |
| MS.gene043708.t1 | MTR_1g035440 | 39.815 | 108 | 58 | 2 | 11 | 114 | 13 | 117 | 2.54e-19 | 82.0 |
| MS.gene043708.t1 | MTR_3g005420 | 35.714 | 112 | 69 | 1 | 13 | 124 | 289 | 397 | 3.31e-18 | 80.9 |
| MS.gene043708.t1 | MTR_3g005420 | 28.788 | 132 | 84 | 3 | 13 | 135 | 40 | 170 | 1.04e-14 | 70.9 |
| MS.gene043708.t1 | MTR_1g034210 | 37.895 | 95 | 59 | 0 | 13 | 107 | 7 | 101 | 2.46e-17 | 77.8 |
| MS.gene043708.t1 | MTR_1g034210 | 37.895 | 95 | 59 | 0 | 13 | 107 | 7 | 101 | 3.32e-17 | 77.8 |
| MS.gene043708.t1 | MTR_1g033740 | 33.571 | 140 | 81 | 3 | 9 | 148 | 18 | 145 | 3.57e-17 | 75.1 |
| MS.gene043708.t1 | MTR_6g061070 | 33.835 | 133 | 83 | 3 | 7 | 139 | 12 | 139 | 6.80e-17 | 77.0 |
| MS.gene043708.t1 | MTR_3g005440 | 35.227 | 88 | 57 | 0 | 27 | 114 | 34 | 121 | 7.00e-17 | 77.0 |
| MS.gene043708.t1 | MTR_3g005440 | 33.673 | 98 | 65 | 0 | 17 | 114 | 246 | 343 | 6.35e-15 | 71.6 |
| MS.gene043708.t1 | MTR_1g035500 | 32.468 | 154 | 91 | 4 | 7 | 160 | 19 | 159 | 1.93e-16 | 73.2 |
| MS.gene043708.t1 | MTR_1g035510 | 34.884 | 129 | 69 | 4 | 28 | 156 | 1 | 114 | 2.43e-15 | 70.9 |
| MS.gene043708.t1 | MTR_1g035470 | 34.884 | 129 | 70 | 5 | 28 | 156 | 1 | 115 | 7.38e-15 | 67.8 |
| MS.gene043708.t1 | MTR_3g005420 | 28.788 | 132 | 84 | 3 | 13 | 135 | 21 | 151 | 1.19e-14 | 70.9 |
| MS.gene043708.t1 | MTR_1g035520 | 42.697 | 89 | 48 | 2 | 28 | 116 | 87 | 172 | 1.76e-14 | 70.1 |
| MS.gene043708.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 2.82e-14 | 68.9 |
| MS.gene043708.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 3.12e-14 | 68.9 |
| MS.gene043708.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 5.28e-14 | 68.6 |
| MS.gene043708.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 5.39e-14 | 68.9 |
| MS.gene043708.t1 | MTR_1g021400 | 31.959 | 97 | 66 | 0 | 11 | 107 | 28 | 124 | 6.18e-14 | 68.6 |
| MS.gene043708.t1 | MTR_1g021410 | 28.105 | 153 | 97 | 2 | 14 | 157 | 23 | 171 | 7.14e-14 | 68.2 |
| MS.gene043708.t1 | MTR_1g021320 | 28.859 | 149 | 97 | 2 | 11 | 153 | 23 | 168 | 2.00e-13 | 67.4 |
| MS.gene043708.t1 | MTR_1g021320 | 33.333 | 90 | 59 | 1 | 14 | 103 | 184 | 272 | 1.50e-12 | 64.7 |
| MS.gene043708.t1 | MTR_1g021360 | 36.905 | 84 | 53 | 0 | 24 | 107 | 193 | 276 | 2.13e-13 | 67.0 |
| MS.gene043708.t1 | MTR_1g021360 | 35.870 | 92 | 58 | 1 | 11 | 102 | 24 | 114 | 8.58e-13 | 65.5 |
| MS.gene043708.t1 | MTR_1g021350 | 31.915 | 94 | 64 | 0 | 14 | 107 | 22 | 115 | 4.42e-13 | 65.9 |
| MS.gene043708.t1 | MTR_1g021435 | 31.633 | 98 | 67 | 0 | 6 | 103 | 15 | 112 | 1.66e-12 | 64.3 |
| MS.gene043708.t1 | MTR_1g021380 | 36.264 | 91 | 54 | 1 | 16 | 102 | 20 | 110 | 1.73e-12 | 64.3 |
| MS.gene043708.t1 | MTR_1g021290 | 34.444 | 90 | 58 | 1 | 14 | 103 | 157 | 245 | 8.19e-12 | 62.4 |
| MS.gene043708.t1 | MTR_1g021270 | 34.146 | 82 | 54 | 0 | 27 | 108 | 29 | 110 | 2.60e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043708.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 4.74e-25 | 99.0 |
| MS.gene043708.t1 | AT4G01580 | 40.870 | 115 | 67 | 1 | 3 | 116 | 19 | 133 | 6.54e-25 | 95.5 |
| MS.gene043708.t1 | AT1G49475 | 39.516 | 124 | 72 | 2 | 12 | 133 | 33 | 155 | 7.05e-25 | 95.1 |
| MS.gene043708.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 7.18e-25 | 99.0 |
| MS.gene043708.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 3.56e-23 | 90.9 |
| MS.gene043708.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 3.84e-23 | 91.3 |
| MS.gene043708.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 29 | 116 | 9 | 96 | 7.16e-19 | 79.3 |
| MS.gene043708.t1 | AT3G53310 | 34.314 | 102 | 65 | 2 | 3 | 104 | 2 | 101 | 3.11e-13 | 66.2 |
Find 0 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAGGAAAGAAAA+TGG | + | 50845:11416-11435 | MS.gene043708:intergenic | 15.0% |
| !! | AATAATAGAATCTAAGTAAA+AGG | + | 50845:11161-11180 | MS.gene043708:intergenic | 15.0% |
| !! | TGAAAGAAAAGAAAAAATTA+AGG | + | 50845:11427-11446 | MS.gene043708:intergenic | 15.0% |
| !!! | CATTTGAGTTTTATATTTAA+GGG | - | 50845:11539-11558 | MS.gene043708:intron | 15.0% |
| !! | AGAAACATTCAAAAAACTAT+GGG | - | 50845:11824-11843 | MS.gene043708:intron | 20.0% |
| !! | ATAACTATCATGTATATTTG+TGG | + | 50845:11711-11730 | MS.gene043708:intergenic | 20.0% |
| !! | TAAGAAAAAAAAAATGCACA+TGG | - | 50845:11509-11528 | MS.gene043708:intron | 20.0% |
| !! | TATACATGATAGTTATCTAT+CGG | - | 50845:11715-11734 | MS.gene043708:intron | 20.0% |
| !! | TGAAAACTAAGTTATTATTG+TGG | - | 50845:11913-11932 | MS.gene043708:intron | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | 50845:12084-12103 | MS.gene043708:intron | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | 50845:12097-12116 | MS.gene043708:intron | 20.0% |
| !! | TTTCAACAAGTAATTAACTT+GGG | - | 50845:11442-11461 | MS.gene043708:CDS | 20.0% |
| !!! | AATAACTTAGTTTTCAAATC+TGG | + | 50845:11909-11928 | MS.gene043708:intergenic | 20.0% |
| !!! | GCAATTTTTTTTTTCTTCAA+AGG | - | 50845:11561-11580 | MS.gene043708:intron | 20.0% |
| !!! | GCATTTGAGTTTTATATTTA+AGG | - | 50845:11538-11557 | MS.gene043708:intron | 20.0% |
| !!! | TTTTTTCTTATAATATGGGA+CGG | + | 50845:11499-11518 | MS.gene043708:intergenic | 20.0% |
| ! | AAAAAGTTTGTGGAGAAATA+TGG | - | 50845:12019-12038 | MS.gene043708:intron | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | 50845:12061-12080 | MS.gene043708:intron | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+CGG | + | 50845:11107-11126 | MS.gene043708:intergenic | 25.0% |
| ! | CTTTCAACAAGTAATTAACT+TGG | - | 50845:11441-11460 | MS.gene043708:CDS | 25.0% |
| ! | GAAAGGAAAATTTATCTCTA+AGG | + | 50845:12248-12267 | MS.gene043708:intergenic | 25.0% |
| ! | GAGAAACATTCAAAAAACTA+TGG | - | 50845:11823-11842 | MS.gene043708:intron | 25.0% |
| ! | TAAATAGTGATGGCAAAATA+TGG | - | 50845:12107-12126 | MS.gene043708:intron | 25.0% |
| ! | TCTATCATAAAACACATTAG+TGG | + | 50845:11616-11635 | MS.gene043708:intergenic | 25.0% |
| ! | TTATATCATGCATGCTAATT+TGG | - | 50845:11973-11992 | MS.gene043708:intron | 25.0% |
| !! | AATTAACTTGGGTAAGATAT+TGG | - | 50845:11453-11472 | MS.gene043708:CDS | 25.0% |
| !! | TGAAAAAACTTCTCTTTTTG+AGG | - | 50845:12201-12220 | MS.gene043708:intron | 25.0% |
| !!! | CTATCGGATTTACTTTTTTT+GGG | - | 50845:11731-11750 | MS.gene043708:intron | 25.0% |
| !!! | TATTTCTCCACAAACTTTTT+TGG | + | 50845:12019-12038 | MS.gene043708:intergenic | 25.0% |
| !!! | TCTATCGGATTTACTTTTTT+TGG | - | 50845:11730-11749 | MS.gene043708:intron | 25.0% |
| !!! | TTGAGTTAGATTCTTTTTTC+AGG | - | 50845:11196-11215 | MS.gene043708:CDS | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | 50845:12122-12141 | MS.gene043708:intron | 30.0% | |
| ACTACAAGATGTGTATTTAG+AGG | - | 50845:11775-11794 | MS.gene043708:intron | 30.0% | |
| ATTATCTTGAAAAAGCGGAT+TGG | + | 50845:11102-11121 | MS.gene043708:intergenic | 30.0% | |
| CTACAAGATGTGTATTTAGA+GGG | - | 50845:11776-11795 | MS.gene043708:intron | 30.0% | |
| GATGATACCAAAAAAGTTTG+TGG | - | 50845:12009-12028 | MS.gene043708:intron | 30.0% | |
| GGAAAGAAAATGGTTCAAAT+TGG | + | 50845:11406-11425 | MS.gene043708:intergenic | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | 50845:12118-12137 | MS.gene043708:intron | 30.0% | |
| GTTAAAAGTCTCACATTACT+TGG | - | 50845:11945-11964 | MS.gene043708:intron | 30.0% | |
| TAGAGGGAATTAGTGATATT+GGG | - | 50845:11792-11811 | MS.gene043708:intron | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | 50845:12366-12385 | MS.gene043708:CDS | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | 50845:12117-12136 | MS.gene043708:intron | 30.0% | |
| TTAGAGGGAATTAGTGATAT+TGG | - | 50845:11791-11810 | MS.gene043708:intron | 30.0% | |
| TTTCATCAACCATGTGAAAT+TGG | - | 50845:12328-12347 | MS.gene043708:intron | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | 50845:12079-12098 | MS.gene043708:intergenic | 30.0% |
| !! | TGGTTGATGAAATTCAAAAG+AGG | + | 50845:12320-12339 | MS.gene043708:intergenic | 30.0% |
| AAGAATGTCACAAGACTTGT+TGG | - | 50845:11319-11338 | MS.gene043708:CDS | 35.0% | |
| ACATTCAAAAAACTATGGGC+TGG | - | 50845:11828-11847 | MS.gene043708:intron | 35.0% | |
| AGAGGGAATTAGTGATATTG+GGG | - | 50845:11793-11812 | MS.gene043708:intron | 35.0% | |
| ATTTGTAGCCCAATGATACT+AGG | - | 50845:11648-11667 | MS.gene043708:intron | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | 50845:11123-11142 | MS.gene043708:CDS | 35.0% | |
| GTATCATTGGGCTACAAATT+TGG | + | 50845:11647-11666 | MS.gene043708:intergenic | 35.0% | |
| TTACTCATCTATGTCGCTAA+TGG | - | 50845:11372-11391 | MS.gene043708:CDS | 35.0% | |
| TTTCTTATAATATGGGACGG+AGG | + | 50845:11496-11515 | MS.gene043708:intergenic | 35.0% | |
| TTTGTAGCCCAATGATACTA+GGG | - | 50845:11649-11668 | MS.gene043708:intron | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | - | 50845:12025-12044 | MS.gene043708:intron | 35.0% | |
| ! | ACTTGTTGGTCATAGTTTGT+GGG | - | 50845:11333-11352 | MS.gene043708:CDS | 35.0% |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | 50845:12183-12202 | MS.gene043708:intergenic | 35.0% |
| !! | ACTTAGTTTTCAAATCTGGC+CGG | + | 50845:11905-11924 | MS.gene043708:intergenic | 35.0% |
| !! | TTTTTGGGAAAACGCACATT+CGG | - | 50845:11746-11765 | MS.gene043708:intron | 35.0% |
| AGAAACGCCCTAGTATCATT+GGG | + | 50845:11659-11678 | MS.gene043708:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | 50845:12071-12090 | MS.gene043708:intron | 40.0% | |
| AGCAGCCTGTTTACTCAATT+CGG | - | 50845:11851-11870 | MS.gene043708:intron | 40.0% | |
| CCATGTGAAATTGGAAGCAA+TGG | - | 50845:12337-12356 | MS.gene043708:intron | 40.0% | |
| CCATTGCTTCCAATTTCACA+TGG | + | 50845:12340-12359 | MS.gene043708:intergenic | 40.0% | |
| GAGGGAATTAGTGATATTGG+GGG | - | 50845:11794-11813 | MS.gene043708:intron | 40.0% | |
| TCATTGGGCTACAAATTTGG+TGG | + | 50845:11644-11663 | MS.gene043708:intergenic | 40.0% | |
| TGGTGCCTTAGAGATATTGA+GGG | + | 50845:11691-11710 | MS.gene043708:intergenic | 40.0% | |
| ! | ATACTAGGGCGTTTCTCTTT+AGG | - | 50845:11663-11682 | MS.gene043708:intron | 40.0% |
| ! | GAGTATCATTCTCTAGCTCA+TGG | - | 50845:12157-12176 | MS.gene043708:intron | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+AGG | + | 50845:12265-12284 | MS.gene043708:intergenic | 40.0% |
| ! | TTGGTCATAGTTTGTGGGTT+AGG | - | 50845:11338-11357 | MS.gene043708:CDS | 40.0% |
| !! | GACTTGTTGGTCATAGTTTG+TGG | - | 50845:11332-11351 | MS.gene043708:CDS | 40.0% |
| !! | TTGGCTTGGACAAGTTAGTT+CGG | - | 50845:11879-11898 | MS.gene043708:intron | 40.0% |
| CCAAAGAGTTGCAGCTAAAG+AGG | - | 50845:12267-12286 | MS.gene043708:intron | 45.0% | |
| CCTCTTTAGCTGCAACTCTT+TGG | + | 50845:12270-12289 | MS.gene043708:intergenic | 45.0% | |
| CTATGTCGCTAATGGCTTCA+TGG | - | 50845:11380-11399 | MS.gene043708:CDS | 45.0% | |
| GAGAAACGCCCTAGTATCAT+TGG | + | 50845:11660-11679 | MS.gene043708:intergenic | 45.0% | |
| GGTGCCTTAGAGATATTGAG+GGG | + | 50845:11690-11709 | MS.gene043708:intergenic | 45.0% | |
| GTGCCTTAGAGATATTGAGG+GGG | + | 50845:11689-11708 | MS.gene043708:intergenic | 45.0% | |
| GTGGTGCCTTAGAGATATTG+AGG | + | 50845:11692-11711 | MS.gene043708:intergenic | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | 50845:11860-11879 | MS.gene043708:intron | 45.0% | |
| ! | ACTAACTTGTCCAAGCCAAG+TGG | + | 50845:11878-11897 | MS.gene043708:intergenic | 45.0% |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | 50845:11877-11896 | MS.gene043708:intergenic | 45.0% |
| !! | GTTGCAGCTAAAGAGGTATC+TGG | - | 50845:12274-12293 | MS.gene043708:intron | 45.0% |
| !!! | ATTTTTTTTTTCTTATAATA+TGG | + | 50845:11504-11523 | MS.gene043708:intergenic | 5.0% |
| !!! | TTTTTTTTTTCTTATAATAT+GGG | + | 50845:11503-11522 | MS.gene043708:intergenic | 5.0% |
| AGGCCCCCTCAATATCTCTA+AGG | - | 50845:11683-11702 | MS.gene043708:intron | 50.0% | |
| CTTGGACAAGTTAGTTCGGC+CGG | - | 50845:11883-11902 | MS.gene043708:intron | 50.0% | |
| GTGGGCCGAATTGAGTAAAC+AGG | + | 50845:11859-11878 | MS.gene043708:intergenic | 50.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | - | 50845:11865-11884 | MS.gene043708:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50845 | gene | 11072 | 12424 | 11072 | ID=MS.gene043708 |
| 50845 | mRNA | 11072 | 12424 | 11072 | ID=MS.gene043708.t1;Parent=MS.gene043708 |
| 50845 | exon | 12344 | 12424 | 12344 | ID=MS.gene043708.t1.exon1;Parent=MS.gene043708.t1 |
| 50845 | CDS | 12344 | 12424 | 12344 | ID=cds.MS.gene043708.t1;Parent=MS.gene043708.t1 |
| 50845 | exon | 11072 | 11486 | 11072 | ID=MS.gene043708.t1.exon2;Parent=MS.gene043708.t1 |
| 50845 | CDS | 11072 | 11486 | 11072 | ID=cds.MS.gene043708.t1;Parent=MS.gene043708.t1 |
| Gene Sequence |
| Protein sequence |
