Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043709.t1 | XP_003622663.1 | 82.8 | 169 | 28 | 1 | 1 | 168 | 1 | 169 | 2.60E-74 | 288.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043709.t1 | Q8L3W1 | 43.4 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 2.1e-19 | 97.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043709.t1 | G7KVV4 | 82.8 | 169 | 28 | 1 | 1 | 168 | 1 | 169 | 1.9e-74 | 288.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043709.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043709.t1 | MTR_7g050560 | 82.840 | 169 | 28 | 1 | 1 | 168 | 1 | 169 | 4.92e-98 | 286 |
| MS.gene043709.t1 | MTR_7g050720 | 65.000 | 180 | 45 | 1 | 5 | 166 | 2 | 181 | 4.65e-78 | 235 |
| MS.gene043709.t1 | MTR_7g050710 | 62.842 | 183 | 52 | 2 | 1 | 168 | 1 | 182 | 3.06e-74 | 225 |
| MS.gene043709.t1 | MTR_7g050590 | 69.032 | 155 | 32 | 2 | 28 | 166 | 1 | 155 | 1.97e-72 | 220 |
| MS.gene043709.t1 | MTR_3g098790 | 61.878 | 181 | 47 | 3 | 1 | 166 | 1 | 174 | 3.04e-72 | 221 |
| MS.gene043709.t1 | MTR_7g050580 | 65.644 | 163 | 34 | 3 | 1 | 148 | 1 | 156 | 2.49e-66 | 205 |
| MS.gene043709.t1 | MTR_7g050640 | 64.602 | 113 | 40 | 0 | 1 | 113 | 1 | 113 | 6.51e-47 | 149 |
| MS.gene043709.t1 | MTR_3g061330 | 53.153 | 111 | 49 | 2 | 1 | 111 | 1 | 108 | 6.23e-35 | 122 |
| MS.gene043709.t1 | MTR_8g103940 | 51.485 | 101 | 49 | 0 | 11 | 111 | 37 | 137 | 5.44e-34 | 125 |
| MS.gene043709.t1 | MTR_3g061290 | 53.922 | 102 | 45 | 1 | 10 | 111 | 9 | 108 | 8.33e-32 | 113 |
| MS.gene043709.t1 | MTR_3g061310 | 50.000 | 106 | 51 | 1 | 6 | 111 | 5 | 108 | 1.04e-30 | 112 |
| MS.gene043709.t1 | MTR_3g061370 | 53.465 | 101 | 45 | 1 | 11 | 111 | 7 | 105 | 2.32e-30 | 112 |
| MS.gene043709.t1 | MTR_3g061340 | 53.398 | 103 | 45 | 2 | 10 | 111 | 9 | 109 | 4.37e-30 | 110 |
| MS.gene043709.t1 | MTR_3g061320 | 49.541 | 109 | 53 | 1 | 3 | 111 | 2 | 108 | 4.59e-30 | 110 |
| MS.gene043709.t1 | MTR_1g035460 | 55.814 | 86 | 38 | 0 | 28 | 113 | 1 | 86 | 1.43e-29 | 112 |
| MS.gene043709.t1 | MTR_3g061350 | 48.649 | 111 | 54 | 2 | 1 | 111 | 1 | 108 | 2.02e-28 | 107 |
| MS.gene043709.t1 | MTR_5g044670 | 43.434 | 99 | 56 | 0 | 13 | 111 | 16 | 114 | 1.71e-27 | 105 |
| MS.gene043709.t1 | MTR_1g108780 | 55.422 | 83 | 37 | 0 | 29 | 111 | 13 | 95 | 2.27e-27 | 106 |
| MS.gene043709.t1 | MTR_3g061220 | 46.226 | 106 | 42 | 2 | 6 | 111 | 5 | 95 | 2.02e-26 | 97.1 |
| MS.gene043709.t1 | MTR_6g043890 | 43.636 | 110 | 57 | 2 | 11 | 117 | 13 | 120 | 1.43e-24 | 97.8 |
| MS.gene043709.t1 | MTR_3g005480 | 34.400 | 125 | 74 | 2 | 13 | 137 | 21 | 137 | 2.33e-24 | 95.9 |
| MS.gene043709.t1 | MTR_4g119990 | 43.810 | 105 | 58 | 1 | 11 | 114 | 13 | 117 | 1.09e-22 | 93.2 |
| MS.gene043709.t1 | MTR_3g005490 | 33.929 | 112 | 71 | 1 | 13 | 124 | 21 | 129 | 6.07e-22 | 89.4 |
| MS.gene043709.t1 | MTR_1g034240 | 40.404 | 99 | 59 | 0 | 13 | 111 | 7 | 105 | 7.62e-22 | 91.3 |
| MS.gene043709.t1 | MTR_4g068320 | 31.646 | 158 | 104 | 2 | 13 | 166 | 6 | 163 | 1.25e-21 | 90.5 |
| MS.gene043709.t1 | MTR_5g070440 | 36.275 | 102 | 65 | 0 | 13 | 114 | 21 | 122 | 1.59e-21 | 88.6 |
| MS.gene043709.t1 | MTR_1g035640 | 47.475 | 99 | 46 | 2 | 13 | 111 | 9 | 101 | 1.82e-21 | 90.5 |
| MS.gene043709.t1 | MTR_1g050845 | 37.589 | 141 | 79 | 3 | 10 | 143 | 6 | 144 | 7.85e-21 | 89.0 |
| MS.gene043709.t1 | MTR_3g005460 | 34.821 | 112 | 70 | 1 | 13 | 124 | 25 | 133 | 2.31e-20 | 87.4 |
| MS.gene043709.t1 | MTR_3g005460 | 35.652 | 115 | 70 | 2 | 11 | 124 | 260 | 371 | 6.29e-19 | 83.2 |
| MS.gene043709.t1 | MTR_3g005495 | 39.216 | 102 | 62 | 0 | 13 | 114 | 243 | 344 | 7.01e-20 | 85.9 |
| MS.gene043709.t1 | MTR_3g005495 | 35.417 | 96 | 59 | 1 | 29 | 124 | 29 | 121 | 2.12e-18 | 81.6 |
| MS.gene043709.t1 | MTR_1g035620 | 41.176 | 102 | 58 | 1 | 10 | 111 | 6 | 105 | 7.86e-20 | 85.5 |
| MS.gene043709.t1 | MTR_1g035650 | 39.216 | 102 | 60 | 1 | 10 | 111 | 6 | 105 | 9.11e-20 | 82.4 |
| MS.gene043709.t1 | MTR_1g035480 | 35.714 | 140 | 79 | 3 | 9 | 148 | 13 | 141 | 1.43e-19 | 81.3 |
| MS.gene043709.t1 | MTR_1g035570 | 44.444 | 90 | 48 | 1 | 22 | 111 | 14 | 101 | 2.63e-19 | 84.0 |
| MS.gene043709.t1 | MTR_1g035440 | 39.815 | 108 | 58 | 2 | 11 | 114 | 13 | 117 | 3.58e-19 | 81.6 |
| MS.gene043709.t1 | MTR_3g005420 | 35.714 | 112 | 69 | 1 | 13 | 124 | 289 | 397 | 4.58e-18 | 80.9 |
| MS.gene043709.t1 | MTR_3g005420 | 28.788 | 132 | 84 | 3 | 13 | 135 | 40 | 170 | 1.75e-14 | 70.5 |
| MS.gene043709.t1 | MTR_1g033740 | 31.677 | 161 | 96 | 4 | 9 | 167 | 18 | 166 | 2.20e-17 | 75.9 |
| MS.gene043709.t1 | MTR_1g034210 | 37.895 | 95 | 59 | 0 | 13 | 107 | 7 | 101 | 4.11e-17 | 77.4 |
| MS.gene043709.t1 | MTR_1g034210 | 37.895 | 95 | 59 | 0 | 13 | 107 | 7 | 101 | 5.00e-17 | 77.4 |
| MS.gene043709.t1 | MTR_6g061070 | 33.835 | 133 | 83 | 3 | 7 | 139 | 12 | 139 | 9.09e-17 | 77.0 |
| MS.gene043709.t1 | MTR_3g005440 | 35.227 | 88 | 57 | 0 | 27 | 114 | 34 | 121 | 1.26e-16 | 76.6 |
| MS.gene043709.t1 | MTR_3g005440 | 33.673 | 98 | 65 | 0 | 17 | 114 | 246 | 343 | 9.75e-15 | 71.2 |
| MS.gene043709.t1 | MTR_1g035500 | 32.468 | 154 | 91 | 4 | 7 | 160 | 19 | 159 | 2.26e-16 | 73.2 |
| MS.gene043709.t1 | MTR_1g035510 | 34.884 | 129 | 69 | 4 | 28 | 156 | 1 | 114 | 3.05e-15 | 70.9 |
| MS.gene043709.t1 | MTR_1g035470 | 34.884 | 129 | 70 | 5 | 28 | 156 | 1 | 115 | 9.13e-15 | 67.8 |
| MS.gene043709.t1 | MTR_3g005420 | 28.788 | 132 | 84 | 3 | 13 | 135 | 21 | 151 | 2.00e-14 | 70.5 |
| MS.gene043709.t1 | MTR_1g035520 | 43.182 | 88 | 47 | 2 | 28 | 115 | 87 | 171 | 2.18e-14 | 70.1 |
| MS.gene043709.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 3.78e-14 | 68.6 |
| MS.gene043709.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 4.22e-14 | 68.6 |
| MS.gene043709.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 6.27e-14 | 68.6 |
| MS.gene043709.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 6.41e-14 | 68.6 |
| MS.gene043709.t1 | MTR_1g021410 | 28.105 | 153 | 97 | 2 | 14 | 157 | 23 | 171 | 6.97e-14 | 68.6 |
| MS.gene043709.t1 | MTR_1g021400 | 31.959 | 97 | 66 | 0 | 11 | 107 | 28 | 124 | 7.13e-14 | 68.6 |
| MS.gene043709.t1 | MTR_1g021360 | 36.905 | 84 | 53 | 0 | 24 | 107 | 193 | 276 | 2.17e-13 | 67.4 |
| MS.gene043709.t1 | MTR_1g021360 | 31.690 | 142 | 89 | 4 | 11 | 147 | 24 | 162 | 8.25e-13 | 65.5 |
| MS.gene043709.t1 | MTR_1g021320 | 28.859 | 149 | 97 | 2 | 11 | 153 | 23 | 168 | 2.22e-13 | 67.4 |
| MS.gene043709.t1 | MTR_1g021320 | 33.333 | 90 | 59 | 1 | 14 | 103 | 184 | 272 | 1.54e-12 | 65.1 |
| MS.gene043709.t1 | MTR_1g021350 | 31.915 | 94 | 64 | 0 | 14 | 107 | 22 | 115 | 4.89e-13 | 65.9 |
| MS.gene043709.t1 | MTR_1g021380 | 36.264 | 91 | 54 | 1 | 16 | 102 | 20 | 110 | 1.83e-12 | 64.3 |
| MS.gene043709.t1 | MTR_1g021435 | 31.633 | 98 | 67 | 0 | 6 | 103 | 15 | 112 | 2.10e-12 | 64.3 |
| MS.gene043709.t1 | MTR_1g021290 | 34.444 | 90 | 58 | 1 | 14 | 103 | 157 | 245 | 8.26e-12 | 62.4 |
| MS.gene043709.t1 | MTR_1g021270 | 34.146 | 82 | 54 | 0 | 27 | 108 | 29 | 110 | 4.02e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043709.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 5.67e-25 | 99.0 |
| MS.gene043709.t1 | AT4G01580 | 40.870 | 115 | 67 | 1 | 3 | 116 | 19 | 133 | 8.69e-25 | 95.1 |
| MS.gene043709.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 9.05e-25 | 98.6 |
| MS.gene043709.t1 | AT1G49475 | 39.516 | 124 | 72 | 2 | 12 | 133 | 33 | 155 | 1.21e-24 | 94.7 |
| MS.gene043709.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 4.66e-23 | 90.9 |
| MS.gene043709.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 5.78e-23 | 90.9 |
| MS.gene043709.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 29 | 116 | 9 | 96 | 9.99e-19 | 79.0 |
| MS.gene043709.t1 | AT3G53310 | 34.314 | 102 | 65 | 2 | 3 | 104 | 2 | 101 | 3.68e-13 | 65.9 |
Find 0 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTTTCTTATAATA+TGG | + | 50841:6973-6992 | MS.gene043709:intergenic | 10.0% |
| !! | AAAAAATTAAGGAAAGAAAA+TGG | + | 50841:6885-6904 | MS.gene043709:intergenic | 15.0% |
| !! | AATAATAGAATCTAAGTAAA+AGG | + | 50841:6630-6649 | MS.gene043709:intergenic | 15.0% |
| !! | TGAAAGAAAAGAAAAAATTA+AGG | + | 50841:6896-6915 | MS.gene043709:intergenic | 15.0% |
| !!! | CATTTGAGTTTTATATTTAA+GGG | - | 50841:7007-7026 | MS.gene043709:intron | 15.0% |
| !! | AGAAACATTCAAAAAACTAT+GGG | - | 50841:7292-7311 | MS.gene043709:intron | 20.0% |
| !! | ATAACTATCATGTATATTTG+TGG | + | 50841:7179-7198 | MS.gene043709:intergenic | 20.0% |
| !! | ATAAGAAAAAAAAATGCACA+TGG | - | 50841:6977-6996 | MS.gene043709:intron | 20.0% |
| !! | TATACATGATAGTTATCTAT+CGG | - | 50841:7183-7202 | MS.gene043709:intron | 20.0% |
| !! | TGAAAACTAAGTTATTATTG+TGG | - | 50841:7381-7400 | MS.gene043709:intron | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | 50841:7552-7571 | MS.gene043709:intron | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | 50841:7565-7584 | MS.gene043709:intron | 20.0% |
| !! | TTTCAACAAGTAATTAACTT+GGG | - | 50841:6911-6930 | MS.gene043709:CDS | 20.0% |
| !!! | AATAACTTAGTTTTCAAATC+TGG | + | 50841:7377-7396 | MS.gene043709:intergenic | 20.0% |
| !!! | GCAATTTTTTTTTTCTTCAA+AGG | - | 50841:7029-7048 | MS.gene043709:intron | 20.0% |
| !!! | GCATTTGAGTTTTATATTTA+AGG | - | 50841:7006-7025 | MS.gene043709:intron | 20.0% |
| !!! | TTTTTTCTTATAATATGGGA+CGG | + | 50841:6968-6987 | MS.gene043709:intergenic | 20.0% |
| ! | AAAAAGTTTGTGGAGAAATA+TGG | - | 50841:7487-7506 | MS.gene043709:intron | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | 50841:7529-7548 | MS.gene043709:intron | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+CGG | + | 50841:6576-6595 | MS.gene043709:intergenic | 25.0% |
| ! | CTTTCAACAAGTAATTAACT+TGG | - | 50841:6910-6929 | MS.gene043709:CDS | 25.0% |
| ! | GAAAGGAAAATTTATCTCTA+AGG | + | 50841:7716-7735 | MS.gene043709:intergenic | 25.0% |
| ! | GAGAAACATTCAAAAAACTA+TGG | - | 50841:7291-7310 | MS.gene043709:intron | 25.0% |
| ! | TAAATAGTGATGGCAAAATA+TGG | - | 50841:7575-7594 | MS.gene043709:intron | 25.0% |
| ! | TCTATCATAAAACACATTAG+TGG | + | 50841:7084-7103 | MS.gene043709:intergenic | 25.0% |
| ! | TTATATCATGCATGCTAATT+TGG | - | 50841:7441-7460 | MS.gene043709:intron | 25.0% |
| !! | AATTAACTTGGGTAAGATAT+TGG | - | 50841:6922-6941 | MS.gene043709:CDS | 25.0% |
| !! | TGAAAAAACTTCTCTTTTTG+AGG | - | 50841:7669-7688 | MS.gene043709:intron | 25.0% |
| !!! | CTATCGGATTTACTTTTTTT+GGG | - | 50841:7199-7218 | MS.gene043709:intron | 25.0% |
| !!! | TATTTCTCCACAAACTTTTT+TGG | + | 50841:7487-7506 | MS.gene043709:intergenic | 25.0% |
| !!! | TCTATCGGATTTACTTTTTT+TGG | - | 50841:7198-7217 | MS.gene043709:intron | 25.0% |
| !!! | TTGAGTTAGATTCTTTTTTC+AGG | - | 50841:6665-6684 | MS.gene043709:CDS | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | 50841:7590-7609 | MS.gene043709:intron | 30.0% | |
| ACTACAAGATGTGTATTTAG+AGG | - | 50841:7243-7262 | MS.gene043709:intron | 30.0% | |
| ATTATCTTGAAAAAGCGGAT+TGG | + | 50841:6571-6590 | MS.gene043709:intergenic | 30.0% | |
| CTACAAGATGTGTATTTAGA+GGG | - | 50841:7244-7263 | MS.gene043709:intron | 30.0% | |
| GATGATACCAAAAAAGTTTG+TGG | - | 50841:7477-7496 | MS.gene043709:intron | 30.0% | |
| GGAAAGAAAATGGTTCAAAT+TGG | + | 50841:6875-6894 | MS.gene043709:intergenic | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | 50841:7586-7605 | MS.gene043709:intron | 30.0% | |
| GTTAAAAGTCTCACATTACT+TGG | - | 50841:7413-7432 | MS.gene043709:intron | 30.0% | |
| TAGAGGGAATTAGTGATATT+GGG | - | 50841:7260-7279 | MS.gene043709:intron | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | 50841:7834-7853 | MS.gene043709:CDS | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | 50841:7585-7604 | MS.gene043709:intron | 30.0% | |
| TTAGAGGGAATTAGTGATAT+TGG | - | 50841:7259-7278 | MS.gene043709:intron | 30.0% | |
| TTTCATCAACCATGTGAAAT+TGG | - | 50841:7796-7815 | MS.gene043709:intron | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | 50841:7547-7566 | MS.gene043709:intergenic | 30.0% |
| !! | TGGTTGATGAAATTCAAAAG+AGG | + | 50841:7788-7807 | MS.gene043709:intergenic | 30.0% |
| AAGAATGTCACAAGACTTGT+TGG | - | 50841:6788-6807 | MS.gene043709:CDS | 35.0% | |
| ACATTCAAAAAACTATGGGC+TGG | - | 50841:7296-7315 | MS.gene043709:intron | 35.0% | |
| AGAGGGAATTAGTGATATTG+GGG | - | 50841:7261-7280 | MS.gene043709:intron | 35.0% | |
| ATTTGTAGCCCAATGATACT+AGG | - | 50841:7116-7135 | MS.gene043709:intron | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | 50841:6592-6611 | MS.gene043709:CDS | 35.0% | |
| GTATCATTGGGCTACAAATT+TGG | + | 50841:7115-7134 | MS.gene043709:intergenic | 35.0% | |
| TTACTCATCTATGTCGCTAA+TGG | - | 50841:6841-6860 | MS.gene043709:CDS | 35.0% | |
| TTTCTTATAATATGGGACGG+AGG | + | 50841:6965-6984 | MS.gene043709:intergenic | 35.0% | |
| TTTGTAGCCCAATGATACTA+GGG | - | 50841:7117-7136 | MS.gene043709:intron | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | - | 50841:7493-7512 | MS.gene043709:intron | 35.0% | |
| ! | ACTTGTTGGTCATAGTTTGT+GGG | - | 50841:6802-6821 | MS.gene043709:CDS | 35.0% |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | 50841:7651-7670 | MS.gene043709:intergenic | 35.0% |
| !! | ACTTAGTTTTCAAATCTGGC+CGG | + | 50841:7373-7392 | MS.gene043709:intergenic | 35.0% |
| !! | TTTTTGGGAAAACGCACATT+CGG | - | 50841:7214-7233 | MS.gene043709:intron | 35.0% |
| AGAAACGCCCTAGTATCATT+GGG | + | 50841:7127-7146 | MS.gene043709:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | 50841:7539-7558 | MS.gene043709:intron | 40.0% | |
| AGCAGCCTGTTTACTCAATT+CGG | - | 50841:7319-7338 | MS.gene043709:intron | 40.0% | |
| CCATGTGAAATTGGAAGCAA+TGG | - | 50841:7805-7824 | MS.gene043709:intron | 40.0% | |
| CCATTGCTTCCAATTTCACA+TGG | + | 50841:7808-7827 | MS.gene043709:intergenic | 40.0% | |
| GAGGGAATTAGTGATATTGG+GGG | - | 50841:7262-7281 | MS.gene043709:intron | 40.0% | |
| TCATTGGGCTACAAATTTGG+TGG | + | 50841:7112-7131 | MS.gene043709:intergenic | 40.0% | |
| TGGTGCCTTAGAGATATTGA+GGG | + | 50841:7159-7178 | MS.gene043709:intergenic | 40.0% | |
| ! | ATACTAGGGCGTTTCTCTTT+AGG | - | 50841:7131-7150 | MS.gene043709:intron | 40.0% |
| ! | GAGTATCATTCTCTAGCTCA+TGG | - | 50841:7625-7644 | MS.gene043709:intron | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+AGG | + | 50841:7733-7752 | MS.gene043709:intergenic | 40.0% |
| ! | TTGGTCATAGTTTGTGGGTT+AGG | - | 50841:6807-6826 | MS.gene043709:CDS | 40.0% |
| !! | GACTTGTTGGTCATAGTTTG+TGG | - | 50841:6801-6820 | MS.gene043709:CDS | 40.0% |
| !! | TTGGCTTGGACAAGTTAGTT+CGG | - | 50841:7347-7366 | MS.gene043709:intron | 40.0% |
| CCAAAGAGTTGCAGCTAAAG+AGG | - | 50841:7735-7754 | MS.gene043709:intron | 45.0% | |
| CCTCTTTAGCTGCAACTCTT+TGG | + | 50841:7738-7757 | MS.gene043709:intergenic | 45.0% | |
| CTATGTCGCTAATGGCTTCA+TGG | - | 50841:6849-6868 | MS.gene043709:CDS | 45.0% | |
| GAGAAACGCCCTAGTATCAT+TGG | + | 50841:7128-7147 | MS.gene043709:intergenic | 45.0% | |
| GGTGCCTTAGAGATATTGAG+GGG | + | 50841:7158-7177 | MS.gene043709:intergenic | 45.0% | |
| GTGCCTTAGAGATATTGAGG+GGG | + | 50841:7157-7176 | MS.gene043709:intergenic | 45.0% | |
| GTGGTGCCTTAGAGATATTG+AGG | + | 50841:7160-7179 | MS.gene043709:intergenic | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | 50841:7328-7347 | MS.gene043709:intron | 45.0% | |
| ! | ACTAACTTGTCCAAGCCAAG+TGG | + | 50841:7346-7365 | MS.gene043709:intergenic | 45.0% |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | 50841:7345-7364 | MS.gene043709:intergenic | 45.0% |
| !! | GTTGCAGCTAAAGAGGTATC+TGG | - | 50841:7742-7761 | MS.gene043709:intron | 45.0% |
| !!! | ATTTTTTTTTCTTATAATAT+GGG | + | 50841:6972-6991 | MS.gene043709:intergenic | 5.0% |
| AGGCCCCCTCAATATCTCTA+AGG | - | 50841:7151-7170 | MS.gene043709:intron | 50.0% | |
| CTTGGACAAGTTAGTTCGGC+CGG | - | 50841:7351-7370 | MS.gene043709:intron | 50.0% | |
| GTGGGCCGAATTGAGTAAAC+AGG | + | 50841:7327-7346 | MS.gene043709:intergenic | 50.0% | |
| CATGCTGACAGAGAGTCCAG+AGG | - | 50841:7871-7890 | MS.gene043709:CDS | 55.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | - | 50841:7333-7352 | MS.gene043709:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50841 | gene | 6541 | 7906 | 6541 | ID=MS.gene043709 |
| 50841 | mRNA | 6541 | 7906 | 6541 | ID=MS.gene043709.t1;Parent=MS.gene043709 |
| 50841 | exon | 7826 | 7906 | 7826 | ID=MS.gene043709.t1.exon1;Parent=MS.gene043709.t1 |
| 50841 | CDS | 7826 | 7906 | 7826 | ID=cds.MS.gene043709.t1;Parent=MS.gene043709.t1 |
| 50841 | exon | 6541 | 6969 | 6541 | ID=MS.gene043709.t1.exon2;Parent=MS.gene043709.t1 |
| 50841 | CDS | 6541 | 6969 | 6541 | ID=cds.MS.gene043709.t1;Parent=MS.gene043709.t1 |
| Gene Sequence |
| Protein sequence |
