Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043710.t1 | XP_003622663.1 | 80.8 | 260 | 47 | 3 | 1 | 259 | 1 | 258 | 2.60E-116 | 428.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043710.t1 | Q8L3W1 | 43.4 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 3.3e-19 | 97.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043710.t1 | G7KVV4 | 80.8 | 260 | 47 | 3 | 1 | 259 | 1 | 258 | 1.8e-116 | 428.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043710.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043710.t1 | MTR_7g050560 | 80.769 | 260 | 47 | 3 | 1 | 259 | 1 | 258 | 6.16e-155 | 434 |
| MS.gene043710.t1 | MTR_7g050590 | 69.076 | 249 | 59 | 4 | 28 | 259 | 1 | 248 | 2.64e-123 | 353 |
| MS.gene043710.t1 | MTR_3g098790 | 62.774 | 274 | 80 | 3 | 1 | 259 | 1 | 267 | 4.72e-119 | 343 |
| MS.gene043710.t1 | MTR_7g050710 | 60.357 | 280 | 93 | 3 | 1 | 263 | 1 | 279 | 2.12e-115 | 334 |
| MS.gene043710.t1 | MTR_7g050580 | 63.869 | 274 | 68 | 4 | 1 | 259 | 1 | 258 | 4.32e-115 | 333 |
| MS.gene043710.t1 | MTR_7g050720 | 57.576 | 264 | 88 | 3 | 5 | 244 | 2 | 265 | 8.43e-103 | 302 |
| MS.gene043710.t1 | MTR_7g050640 | 64.602 | 113 | 40 | 0 | 1 | 113 | 1 | 113 | 1.15e-45 | 149 |
| MS.gene043710.t1 | MTR_1g035460 | 33.083 | 266 | 133 | 7 | 28 | 259 | 1 | 255 | 5.75e-39 | 140 |
| MS.gene043710.t1 | MTR_8g103940 | 33.962 | 265 | 145 | 8 | 11 | 249 | 37 | 297 | 9.50e-39 | 141 |
| MS.gene043710.t1 | MTR_1g108780 | 30.682 | 264 | 132 | 10 | 29 | 259 | 13 | 258 | 8.17e-34 | 127 |
| MS.gene043710.t1 | MTR_3g061330 | 53.774 | 106 | 47 | 1 | 6 | 111 | 5 | 108 | 2.53e-33 | 122 |
| MS.gene043710.t1 | MTR_3g061320 | 33.818 | 275 | 144 | 9 | 3 | 263 | 2 | 252 | 3.01e-33 | 122 |
| MS.gene043710.t1 | MTR_3g061290 | 53.922 | 102 | 45 | 1 | 10 | 111 | 9 | 108 | 1.47e-30 | 113 |
| MS.gene043710.t1 | MTR_3g061350 | 32.959 | 267 | 155 | 11 | 1 | 258 | 1 | 252 | 1.79e-30 | 115 |
| MS.gene043710.t1 | MTR_3g061370 | 33.460 | 263 | 150 | 11 | 11 | 263 | 7 | 254 | 5.37e-30 | 114 |
| MS.gene043710.t1 | MTR_3g061310 | 31.679 | 262 | 157 | 9 | 6 | 258 | 5 | 253 | 1.07e-29 | 113 |
| MS.gene043710.t1 | MTR_3g061340 | 33.462 | 260 | 136 | 10 | 10 | 258 | 9 | 242 | 1.14e-29 | 113 |
| MS.gene043710.t1 | MTR_5g044670 | 29.368 | 269 | 159 | 9 | 13 | 261 | 16 | 273 | 8.24e-29 | 112 |
| MS.gene043710.t1 | MTR_6g043890 | 29.670 | 273 | 154 | 10 | 11 | 258 | 13 | 272 | 4.55e-25 | 102 |
| MS.gene043710.t1 | MTR_3g061220 | 46.226 | 106 | 42 | 2 | 6 | 111 | 5 | 95 | 4.77e-25 | 96.7 |
| MS.gene043710.t1 | MTR_4g119990 | 28.148 | 270 | 168 | 7 | 11 | 258 | 13 | 278 | 5.73e-24 | 99.8 |
| MS.gene043710.t1 | MTR_3g005480 | 34.400 | 125 | 74 | 2 | 13 | 137 | 21 | 137 | 9.82e-24 | 97.1 |
| MS.gene043710.t1 | MTR_1g035570 | 29.600 | 250 | 156 | 6 | 22 | 259 | 14 | 255 | 1.52e-22 | 95.9 |
| MS.gene043710.t1 | MTR_1g035640 | 31.019 | 216 | 128 | 6 | 13 | 219 | 9 | 212 | 1.10e-21 | 94.0 |
| MS.gene043710.t1 | MTR_4g068320 | 32.121 | 165 | 108 | 2 | 13 | 173 | 6 | 170 | 1.37e-21 | 93.6 |
| MS.gene043710.t1 | MTR_1g035620 | 27.200 | 250 | 174 | 6 | 10 | 259 | 6 | 247 | 2.75e-21 | 92.4 |
| MS.gene043710.t1 | MTR_3g005490 | 33.929 | 112 | 71 | 1 | 13 | 124 | 21 | 129 | 3.31e-21 | 90.1 |
| MS.gene043710.t1 | MTR_5g070440 | 36.275 | 102 | 65 | 0 | 13 | 114 | 21 | 122 | 1.18e-20 | 89.0 |
| MS.gene043710.t1 | MTR_1g050845 | 30.876 | 217 | 116 | 5 | 10 | 219 | 6 | 195 | 1.26e-20 | 91.7 |
| MS.gene043710.t1 | MTR_1g034240 | 40.404 | 99 | 59 | 0 | 13 | 111 | 7 | 105 | 2.11e-20 | 90.1 |
| MS.gene043710.t1 | MTR_3g005460 | 36.275 | 102 | 65 | 0 | 13 | 114 | 25 | 126 | 1.52e-19 | 88.2 |
| MS.gene043710.t1 | MTR_3g005460 | 35.652 | 115 | 70 | 2 | 11 | 124 | 260 | 371 | 3.06e-18 | 84.3 |
| MS.gene043710.t1 | MTR_1g035650 | 30.612 | 196 | 112 | 3 | 10 | 185 | 6 | 197 | 1.90e-19 | 84.3 |
| MS.gene043710.t1 | MTR_3g005495 | 39.216 | 102 | 62 | 0 | 13 | 114 | 243 | 344 | 5.00e-19 | 86.7 |
| MS.gene043710.t1 | MTR_3g005495 | 37.209 | 86 | 54 | 0 | 29 | 114 | 29 | 114 | 9.39e-18 | 82.8 |
| MS.gene043710.t1 | MTR_1g035480 | 35.714 | 140 | 79 | 3 | 9 | 148 | 13 | 141 | 7.56e-19 | 82.0 |
| MS.gene043710.t1 | MTR_3g005420 | 25.896 | 251 | 151 | 7 | 13 | 261 | 289 | 506 | 9.93e-19 | 85.9 |
| MS.gene043710.t1 | MTR_3g005420 | 28.788 | 132 | 84 | 3 | 13 | 135 | 40 | 170 | 7.71e-14 | 71.2 |
| MS.gene043710.t1 | MTR_1g035440 | 39.815 | 108 | 58 | 2 | 11 | 114 | 13 | 117 | 7.57e-18 | 80.9 |
| MS.gene043710.t1 | MTR_1g033740 | 30.409 | 171 | 105 | 4 | 9 | 177 | 18 | 176 | 3.90e-17 | 77.8 |
| MS.gene043710.t1 | MTR_1g021360 | 26.070 | 257 | 166 | 6 | 24 | 263 | 193 | 442 | 1.96e-16 | 79.0 |
| MS.gene043710.t1 | MTR_1g021360 | 35.870 | 92 | 58 | 1 | 11 | 102 | 24 | 114 | 1.20e-11 | 64.7 |
| MS.gene043710.t1 | MTR_6g061070 | 33.835 | 133 | 83 | 3 | 7 | 139 | 12 | 139 | 5.47e-16 | 77.4 |
| MS.gene043710.t1 | MTR_3g005440 | 35.227 | 88 | 57 | 0 | 27 | 114 | 34 | 121 | 5.56e-16 | 77.4 |
| MS.gene043710.t1 | MTR_3g005440 | 33.673 | 98 | 65 | 0 | 17 | 114 | 246 | 343 | 5.21e-14 | 71.6 |
| MS.gene043710.t1 | MTR_1g034210 | 36.735 | 98 | 62 | 0 | 13 | 110 | 7 | 104 | 5.85e-16 | 76.6 |
| MS.gene043710.t1 | MTR_1g034210 | 36.735 | 98 | 62 | 0 | 13 | 110 | 7 | 104 | 8.43e-16 | 76.6 |
| MS.gene043710.t1 | MTR_1g035500 | 32.468 | 154 | 91 | 4 | 7 | 160 | 19 | 159 | 1.40e-15 | 73.2 |
| MS.gene043710.t1 | MTR_1g021410 | 25.287 | 261 | 139 | 6 | 14 | 222 | 23 | 279 | 6.95e-15 | 73.9 |
| MS.gene043710.t1 | MTR_1g035510 | 34.884 | 129 | 69 | 4 | 28 | 156 | 1 | 114 | 1.42e-14 | 71.2 |
| MS.gene043710.t1 | MTR_1g035470 | 34.884 | 129 | 70 | 5 | 28 | 156 | 1 | 115 | 4.77e-14 | 68.2 |
| MS.gene043710.t1 | MTR_3g005420 | 28.788 | 132 | 84 | 3 | 13 | 135 | 21 | 151 | 7.62e-14 | 71.2 |
| MS.gene043710.t1 | MTR_1g021400 | 24.314 | 255 | 146 | 6 | 11 | 218 | 28 | 282 | 9.33e-14 | 70.5 |
| MS.gene043710.t1 | MTR_1g035520 | 42.697 | 89 | 48 | 2 | 28 | 116 | 87 | 172 | 2.27e-13 | 69.7 |
| MS.gene043710.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 2.36e-13 | 68.9 |
| MS.gene043710.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 2.84e-13 | 68.9 |
| MS.gene043710.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 4.53e-13 | 68.6 |
| MS.gene043710.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 4.78e-13 | 68.6 |
| MS.gene043710.t1 | MTR_1g021320 | 28.859 | 149 | 97 | 2 | 11 | 153 | 23 | 168 | 1.96e-12 | 67.4 |
| MS.gene043710.t1 | MTR_1g021320 | 33.333 | 90 | 59 | 1 | 14 | 103 | 184 | 272 | 1.74e-11 | 64.7 |
| MS.gene043710.t1 | MTR_1g021350 | 31.915 | 94 | 64 | 0 | 14 | 107 | 22 | 115 | 4.81e-12 | 65.5 |
| MS.gene043710.t1 | MTR_1g021435 | 22.152 | 316 | 186 | 6 | 6 | 263 | 15 | 328 | 9.37e-12 | 64.7 |
| MS.gene043710.t1 | MTR_1g021380 | 23.469 | 294 | 170 | 7 | 16 | 263 | 20 | 304 | 9.54e-12 | 64.7 |
| MS.gene043710.t1 | MTR_1g021290 | 32.979 | 94 | 62 | 1 | 14 | 107 | 157 | 249 | 9.37e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043710.t1 | AT1G49475 | 39.516 | 124 | 72 | 2 | 12 | 133 | 33 | 155 | 8.19e-24 | 95.5 |
| MS.gene043710.t1 | AT4G01580 | 40.870 | 115 | 67 | 1 | 3 | 116 | 19 | 133 | 9.09e-24 | 95.5 |
| MS.gene043710.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 1.20e-23 | 98.2 |
| MS.gene043710.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 1.71e-23 | 98.2 |
| MS.gene043710.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 3.88e-22 | 91.3 |
| MS.gene043710.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 4.31e-22 | 91.3 |
| MS.gene043710.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 29 | 116 | 9 | 96 | 6.22e-18 | 79.3 |
| MS.gene043710.t1 | AT3G53310 | 34.314 | 102 | 65 | 2 | 3 | 104 | 2 | 101 | 2.91e-12 | 65.9 |
Find 0 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAGGAAAGAAAA+TGG | + | 50846:940-959 | MS.gene043710:intergenic | 15.0% |
| !! | AATAATAGAATCTAAGTAAA+AGG | + | 50846:685-704 | MS.gene043710:intergenic | 15.0% |
| !! | ATTATCACATAAAAGTTTAT+TGG | - | 50846:2411-2430 | MS.gene043710:intron | 15.0% |
| !! | TGAAAGAAAAGAAAAAATTA+AGG | + | 50846:951-970 | MS.gene043710:intergenic | 15.0% |
| !!! | AAAAATTAGAAAGTTTTTGT+TGG | + | 50846:2519-2538 | MS.gene043710:intergenic | 15.0% |
| !!! | CATTTGAGTTTTATATTTAA+GGG | - | 50846:1063-1082 | MS.gene043710:intron | 15.0% |
| !!! | TTTGTCCTTTTTTTTTTTAT+TGG | - | 50846:2550-2569 | MS.gene043710:intron | 15.0% |
| !! | AGAAACATTCAAAAAACTAT+GGG | - | 50846:1347-1366 | MS.gene043710:intron | 20.0% |
| !! | ATAACTATCATGTATATTTG+TGG | + | 50846:1234-1253 | MS.gene043710:intergenic | 20.0% |
| !! | TAAGAAAAAAAAAATGCACA+TGG | - | 50846:1033-1052 | MS.gene043710:intron | 20.0% |
| !! | TATACATGATAGTTATCTAT+CGG | - | 50846:1238-1257 | MS.gene043710:intron | 20.0% |
| !! | TGAAAACTAAGTTATTATTG+TGG | - | 50846:1436-1455 | MS.gene043710:CDS | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | 50846:1607-1626 | MS.gene043710:CDS | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | 50846:1620-1639 | MS.gene043710:CDS | 20.0% |
| !! | TTATGTGATAATATCTGATT+TGG | + | 50846:2403-2422 | MS.gene043710:intergenic | 20.0% |
| !! | TTCTGCCAATAAAAAAAAAA+AGG | + | 50846:2558-2577 | MS.gene043710:intergenic | 20.0% |
| !! | TTTCAACAAGTAATTAACTT+GGG | - | 50846:966-985 | MS.gene043710:intron | 20.0% |
| !!! | AATAACTTAGTTTTCAAATC+TGG | + | 50846:1432-1451 | MS.gene043710:intergenic | 20.0% |
| !!! | GCATTTGAGTTTTATATTTA+AGG | - | 50846:1062-1081 | MS.gene043710:intron | 20.0% |
| !!! | TTTTTTCTTATAATATGGGA+CGG | + | 50846:1023-1042 | MS.gene043710:intergenic | 20.0% |
| ! | AAAAAGTTTGTGGAGAAATA+TGG | - | 50846:1542-1561 | MS.gene043710:CDS | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | 50846:1584-1603 | MS.gene043710:CDS | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+CGG | + | 50846:631-650 | MS.gene043710:intergenic | 25.0% |
| ! | CTTTCAACAAGTAATTAACT+TGG | - | 50846:965-984 | MS.gene043710:intron | 25.0% |
| ! | GAAAGGAAAATTTATCTCTA+AGG | + | 50846:1771-1790 | MS.gene043710:intergenic | 25.0% |
| ! | GAGAAACATTCAAAAAACTA+TGG | - | 50846:1346-1365 | MS.gene043710:intron | 25.0% |
| ! | TAAATAGTGATGGCAAAATA+TGG | - | 50846:1630-1649 | MS.gene043710:CDS | 25.0% |
| ! | TCTATCATAAAACACATTAG+TGG | + | 50846:1139-1158 | MS.gene043710:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | 50846:2081-2100 | MS.gene043710:intergenic | 25.0% |
| ! | TGTTAACATAAATCTTTAGC+AGG | - | 50846:2013-2032 | MS.gene043710:intron | 25.0% |
| ! | TTATATCATGCATGCTAATT+TGG | - | 50846:1496-1515 | MS.gene043710:CDS | 25.0% |
| !! | AATTAACTTGGGTAAGATAT+TGG | - | 50846:977-996 | MS.gene043710:intron | 25.0% |
| !! | TGAAAAAACTTCTCTTTTTG+AGG | - | 50846:1724-1743 | MS.gene043710:CDS | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | 50846:2080-2099 | MS.gene043710:intron | 25.0% |
| !!! | ATCTGATTTGGATAATTGTT+AGG | + | 50846:2391-2410 | MS.gene043710:intergenic | 25.0% |
| !!! | CTATCGGATTTACTTTTTTT+GGG | - | 50846:1254-1273 | MS.gene043710:intron | 25.0% |
| !!! | GGCAATTTTTTTTTCTTCAA+AGG | - | 50846:1084-1103 | MS.gene043710:intron | 25.0% |
| !!! | TATTTCTCCACAAACTTTTT+TGG | + | 50846:1542-1561 | MS.gene043710:intergenic | 25.0% |
| !!! | TCTATCGGATTTACTTTTTT+TGG | - | 50846:1253-1272 | MS.gene043710:intron | 25.0% |
| !!! | TTGAGTTAGATTCTTTTTTC+AGG | - | 50846:720-739 | MS.gene043710:CDS | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | 50846:1645-1664 | MS.gene043710:CDS | 30.0% | |
| ACTACAAGATGTGTATTTAG+AGG | - | 50846:1298-1317 | MS.gene043710:intron | 30.0% | |
| ATTATCTTGAAAAAGCGGAT+TGG | + | 50846:626-645 | MS.gene043710:intergenic | 30.0% | |
| CTACAAGATGTGTATTTAGA+GGG | - | 50846:1299-1318 | MS.gene043710:intron | 30.0% | |
| GATGATACCAAAAAAGTTTG+TGG | - | 50846:1532-1551 | MS.gene043710:CDS | 30.0% | |
| GGAAAGAAAATGGTTCAAAT+TGG | + | 50846:930-949 | MS.gene043710:intergenic | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | 50846:1641-1660 | MS.gene043710:CDS | 30.0% | |
| GTTAAAAGTCTCACATTACT+TGG | - | 50846:1468-1487 | MS.gene043710:CDS | 30.0% | |
| TAGAGGGAATTAGTGATATT+GGG | - | 50846:1315-1334 | MS.gene043710:intron | 30.0% | |
| TATTTGCAGGTGTTAAATGA+AGG | - | 50846:2636-2655 | MS.gene043710:intron | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | 50846:1889-1908 | MS.gene043710:intron | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | 50846:1640-1659 | MS.gene043710:CDS | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | 50846:2593-2612 | MS.gene043710:intron | 30.0% | |
| TTAGAGGGAATTAGTGATAT+TGG | - | 50846:1314-1333 | MS.gene043710:intron | 30.0% | |
| TTTCATCAACCATGTGAAAT+TGG | - | 50846:1851-1870 | MS.gene043710:intron | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | 50846:1602-1621 | MS.gene043710:intergenic | 30.0% |
| !! | TGGTTGATGAAATTCAAAAG+AGG | + | 50846:1843-1862 | MS.gene043710:intergenic | 30.0% |
| AAGAATGTCACAAGACTTGT+TGG | - | 50846:843-862 | MS.gene043710:intron | 35.0% | |
| ACATTCAAAAAACTATGGGC+TGG | - | 50846:1351-1370 | MS.gene043710:intron | 35.0% | |
| AGAGGGAATTAGTGATATTG+GGG | - | 50846:1316-1335 | MS.gene043710:intron | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | - | 50846:2643-2662 | MS.gene043710:intron | 35.0% | |
| ATTTGTAGCCCAATGATACT+AGG | - | 50846:1171-1190 | MS.gene043710:CDS | 35.0% | |
| CAGAATATACCACGTATGTT+TGG | - | 50846:2573-2592 | MS.gene043710:intron | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | 50846:647-666 | MS.gene043710:CDS | 35.0% | |
| GACACAAAATTGTATACCTC+TGG | + | 50846:1945-1964 | MS.gene043710:intergenic | 35.0% | |
| GGATAATTGTTAGGACCAAT+TGG | + | 50846:2382-2401 | MS.gene043710:intergenic | 35.0% | |
| GGTAAGTTGCAAAGAAAGTT+TGG | - | 50846:2226-2245 | MS.gene043710:intron | 35.0% | |
| GTATCATTGGGCTACAAATT+TGG | + | 50846:1170-1189 | MS.gene043710:intergenic | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | - | 50846:2364-2383 | MS.gene043710:intron | 35.0% | |
| TGCAACTTACCAGAAGAAAT+CGG | + | 50846:2217-2236 | MS.gene043710:intergenic | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | + | 50846:2585-2604 | MS.gene043710:intergenic | 35.0% | |
| TTACTCATCTATGTCGCTAA+TGG | - | 50846:896-915 | MS.gene043710:intron | 35.0% | |
| TTAGGACCAATTGGTATCAA+CGG | + | 50846:2373-2392 | MS.gene043710:intergenic | 35.0% | |
| TTTCTTATAATATGGGACGG+AGG | + | 50846:1020-1039 | MS.gene043710:intergenic | 35.0% | |
| TTTGTAGCCCAATGATACTA+GGG | - | 50846:1172-1191 | MS.gene043710:CDS | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | - | 50846:1548-1567 | MS.gene043710:CDS | 35.0% | |
| ! | ACTTGTTGGTCATAGTTTGT+GGG | - | 50846:857-876 | MS.gene043710:intron | 35.0% |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | 50846:1706-1725 | MS.gene043710:intergenic | 35.0% |
| ! | GTTGTAATTTTCTCAGCAGT+AGG | + | 50846:2119-2138 | MS.gene043710:intergenic | 35.0% |
| !! | ACTTAGTTTTCAAATCTGGC+CGG | + | 50846:1428-1447 | MS.gene043710:intergenic | 35.0% |
| !! | TTTGATTTGGATCAGAAGAG+AGG | - | 50846:2606-2625 | MS.gene043710:intron | 35.0% |
| !! | TTTTTGGGAAAACGCACATT+CGG | - | 50846:1269-1288 | MS.gene043710:intron | 35.0% |
| AGAAACGCCCTAGTATCATT+GGG | + | 50846:1182-1201 | MS.gene043710:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | 50846:1594-1613 | MS.gene043710:CDS | 40.0% | |
| AGCAGCCTGTTTACTCAATT+CGG | - | 50846:1374-1393 | MS.gene043710:intron | 40.0% | |
| ATCCTGATTAGGAACTTTGC+AGG | + | 50846:2669-2688 | MS.gene043710:intergenic | 40.0% | |
| CCATGTGAAATTGGAAGCAA+TGG | - | 50846:1860-1879 | MS.gene043710:intron | 40.0% | |
| CCATTGCTTCCAATTTCACA+TGG | + | 50846:1863-1882 | MS.gene043710:intergenic | 40.0% | |
| GAGAGGAGATGTTTATTTGC+AGG | - | 50846:2623-2642 | MS.gene043710:intron | 40.0% | |
| GAGGGAATTAGTGATATTGG+GGG | - | 50846:1317-1336 | MS.gene043710:intron | 40.0% | |
| TAGGACCAATTGGTATCAAC+GGG | + | 50846:2372-2391 | MS.gene043710:intergenic | 40.0% | |
| TCATTGGGCTACAAATTTGG+TGG | + | 50846:1167-1186 | MS.gene043710:intergenic | 40.0% | |
| TCTAACATGTGGTCCTGTAA+GGG | + | 50846:2694-2713 | MS.gene043710:intergenic | 40.0% | |
| TGGTGCCTTAGAGATATTGA+GGG | + | 50846:1214-1233 | MS.gene043710:intergenic | 40.0% | |
| ! | ATACTAGGGCGTTTCTCTTT+AGG | - | 50846:1186-1205 | MS.gene043710:CDS | 40.0% |
| ! | GAGTATCATTCTCTAGCTCA+TGG | - | 50846:1680-1699 | MS.gene043710:CDS | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+AGG | + | 50846:1788-1807 | MS.gene043710:intergenic | 40.0% |
| ! | TTGGTCATAGTTTGTGGGTT+AGG | - | 50846:862-881 | MS.gene043710:intron | 40.0% |
| !! | GACTTGTTGGTCATAGTTTG+TGG | - | 50846:856-875 | MS.gene043710:intron | 40.0% |
| !! | TTGGCTTGGACAAGTTAGTT+CGG | - | 50846:1402-1421 | MS.gene043710:intron | 40.0% |
| ATGTTAGACTCTCAGGTGGA+TGG | - | 50846:2706-2725 | MS.gene043710:CDS | 45.0% | |
| CCAAAGAGTTGCAGCTAAAG+AGG | - | 50846:1790-1809 | MS.gene043710:CDS | 45.0% | |
| CCTCTTTAGCTGCAACTCTT+TGG | + | 50846:1793-1812 | MS.gene043710:intergenic | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | 50846:2176-2195 | MS.gene043710:intergenic | 45.0% | |
| CTAATCAGGATGACCCTTAC+AGG | - | 50846:2678-2697 | MS.gene043710:CDS | 45.0% | |
| CTATGTCGCTAATGGCTTCA+TGG | - | 50846:904-923 | MS.gene043710:intron | 45.0% | |
| CTGTAAGGGTCATCCTGATT+AGG | + | 50846:2680-2699 | MS.gene043710:intergenic | 45.0% | |
| GAGAAACGCCCTAGTATCAT+TGG | + | 50846:1183-1202 | MS.gene043710:intergenic | 45.0% | |
| GGTGCCTTAGAGATATTGAG+GGG | + | 50846:1213-1232 | MS.gene043710:intergenic | 45.0% | |
| GTCTAACATGTGGTCCTGTA+AGG | + | 50846:2695-2714 | MS.gene043710:intergenic | 45.0% | |
| GTGCCTTAGAGATATTGAGG+GGG | + | 50846:1212-1231 | MS.gene043710:intergenic | 45.0% | |
| GTGGTGCCTTAGAGATATTG+AGG | + | 50846:1215-1234 | MS.gene043710:intergenic | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | 50846:2180-2199 | MS.gene043710:intergenic | 45.0% | |
| TGTTGTCATGCGTGCATCAT+CGG | - | 50846:2184-2203 | MS.gene043710:intron | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | 50846:1383-1402 | MS.gene043710:intron | 45.0% | |
| ! | AACTACGTATGCACTGACGA+AGG | - | 50846:2256-2275 | MS.gene043710:intron | 45.0% |
| ! | ACTAACTTGTCCAAGCCAAG+TGG | + | 50846:1401-1420 | MS.gene043710:intergenic | 45.0% |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | 50846:1400-1419 | MS.gene043710:intergenic | 45.0% |
| !! | GTTGCAGCTAAAGAGGTATC+TGG | - | 50846:1797-1816 | MS.gene043710:CDS | 45.0% |
| !!! | ATTTTTTTTTTCTTATAATA+TGG | + | 50846:1028-1047 | MS.gene043710:intergenic | 5.0% |
| !!! | TTTTTTTTTTCTTATAATAT+GGG | + | 50846:1027-1046 | MS.gene043710:intergenic | 5.0% |
| AGGCCCCCTCAATATCTCTA+AGG | - | 50846:1206-1225 | MS.gene043710:CDS | 50.0% | |
| CCACATGTTAGACTCTCAGG+TGG | - | 50846:2702-2721 | MS.gene043710:CDS | 50.0% | |
| CCACCTGAGAGTCTAACATG+TGG | + | 50846:2705-2724 | MS.gene043710:intergenic | 50.0% | |
| CTTGGACAAGTTAGTTCGGC+CGG | - | 50846:1406-1425 | MS.gene043710:CDS | 50.0% | |
| GGACCACATGTTAGACTCTC+AGG | - | 50846:2699-2718 | MS.gene043710:CDS | 50.0% | |
| GGCCTGCAAAGTTCCTAATC+AGG | - | 50846:2664-2683 | MS.gene043710:intron | 50.0% | |
| GTGGGCCGAATTGAGTAAAC+AGG | + | 50846:1382-1401 | MS.gene043710:intergenic | 50.0% | |
| !! | GGTGGAACACCGATTTCTTC+TGG | - | 50846:2205-2224 | MS.gene043710:intron | 50.0% |
| !! | GTGGATGGAAGCATTTGCAG+AGG | - | 50846:2721-2740 | MS.gene043710:CDS | 50.0% |
| CATGCTGACAGAGAGTCCAG+AGG | - | 50846:1926-1945 | MS.gene043710:intron | 55.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | - | 50846:1388-1407 | MS.gene043710:intron | 55.0% | |
| TGTCATGCGTGCATCATCGG+TGG | - | 50846:2187-2206 | MS.gene043710:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50846 | gene | 596 | 2755 | 596 | ID=MS.gene043710 |
| 50846 | mRNA | 596 | 2755 | 596 | ID=MS.gene043710.t1;Parent=MS.gene043710 |
| 50846 | exon | 2675 | 2755 | 2675 | ID=MS.gene043710.t1.exon1;Parent=MS.gene043710.t1 |
| 50846 | CDS | 2675 | 2755 | 2675 | ID=cds.MS.gene043710.t1;Parent=MS.gene043710.t1 |
| 50846 | exon | 1404 | 1818 | 1404 | ID=MS.gene043710.t1.exon2;Parent=MS.gene043710.t1 |
| 50846 | CDS | 1404 | 1818 | 1404 | ID=cds.MS.gene043710.t1;Parent=MS.gene043710.t1 |
| 50846 | exon | 1125 | 1249 | 1125 | ID=MS.gene043710.t1.exon3;Parent=MS.gene043710.t1 |
| 50846 | CDS | 1125 | 1249 | 1125 | ID=cds.MS.gene043710.t1;Parent=MS.gene043710.t1 |
| 50846 | exon | 596 | 775 | 596 | ID=MS.gene043710.t1.exon4;Parent=MS.gene043710.t1 |
| 50846 | CDS | 596 | 775 | 596 | ID=cds.MS.gene043710.t1;Parent=MS.gene043710.t1 |
| Gene Sequence |
| Protein sequence |
