Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043711.t1 | XP_003622663.1 | 76 | 208 | 48 | 2 | 1 | 207 | 1 | 207 | 3.50E-81 | 311.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043711.t1 | Q8L3W1 | 43.4 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 2.5e-19 | 97.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043711.t1 | G7KVV4 | 76.0 | 208 | 48 | 2 | 1 | 207 | 1 | 207 | 2.6e-81 | 311.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043711.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043711.t1 | MTR_7g050560 | 75.962 | 208 | 48 | 2 | 1 | 207 | 1 | 207 | 1.40e-109 | 317 |
| MS.gene043711.t1 | MTR_7g050710 | 61.261 | 222 | 70 | 2 | 1 | 207 | 1 | 221 | 4.82e-89 | 265 |
| MS.gene043711.t1 | MTR_7g050720 | 60.280 | 214 | 62 | 2 | 5 | 195 | 2 | 215 | 4.21e-86 | 257 |
| MS.gene043711.t1 | MTR_3g098790 | 59.459 | 222 | 68 | 3 | 1 | 207 | 1 | 215 | 4.52e-85 | 254 |
| MS.gene043711.t1 | MTR_7g050590 | 64.796 | 196 | 52 | 3 | 28 | 207 | 1 | 195 | 3.08e-84 | 251 |
| MS.gene043711.t1 | MTR_7g050580 | 58.108 | 222 | 62 | 4 | 1 | 207 | 1 | 206 | 4.36e-75 | 229 |
| MS.gene043711.t1 | MTR_7g050640 | 64.602 | 113 | 40 | 0 | 1 | 113 | 1 | 113 | 6.84e-47 | 150 |
| MS.gene043711.t1 | MTR_8g103940 | 37.143 | 210 | 107 | 4 | 11 | 195 | 37 | 246 | 1.02e-37 | 136 |
| MS.gene043711.t1 | MTR_3g061330 | 53.153 | 111 | 49 | 2 | 1 | 111 | 1 | 108 | 1.21e-34 | 123 |
| MS.gene043711.t1 | MTR_3g061290 | 53.922 | 102 | 45 | 1 | 10 | 111 | 9 | 108 | 1.51e-31 | 114 |
| MS.gene043711.t1 | MTR_3g061310 | 48.624 | 109 | 54 | 1 | 3 | 111 | 2 | 108 | 2.03e-30 | 113 |
| MS.gene043711.t1 | MTR_3g061370 | 53.465 | 101 | 45 | 1 | 11 | 111 | 7 | 105 | 4.84e-30 | 112 |
| MS.gene043711.t1 | MTR_3g061340 | 53.398 | 103 | 45 | 2 | 10 | 111 | 9 | 109 | 7.57e-30 | 111 |
| MS.gene043711.t1 | MTR_3g061320 | 49.541 | 109 | 53 | 1 | 3 | 111 | 2 | 108 | 8.94e-30 | 111 |
| MS.gene043711.t1 | MTR_1g035460 | 34.158 | 202 | 99 | 4 | 28 | 195 | 1 | 202 | 3.16e-29 | 112 |
| MS.gene043711.t1 | MTR_3g061350 | 34.314 | 204 | 117 | 6 | 1 | 195 | 1 | 196 | 9.56e-29 | 108 |
| MS.gene043711.t1 | MTR_1g108780 | 33.505 | 194 | 101 | 4 | 29 | 195 | 13 | 205 | 9.90e-29 | 112 |
| MS.gene043711.t1 | MTR_5g044670 | 43.434 | 99 | 56 | 0 | 13 | 111 | 16 | 114 | 3.05e-27 | 105 |
| MS.gene043711.t1 | MTR_3g061220 | 46.226 | 106 | 42 | 2 | 6 | 111 | 5 | 95 | 4.54e-26 | 97.4 |
| MS.gene043711.t1 | MTR_6g043890 | 43.636 | 110 | 57 | 2 | 11 | 117 | 13 | 120 | 3.69e-24 | 97.8 |
| MS.gene043711.t1 | MTR_3g005480 | 34.400 | 125 | 74 | 2 | 13 | 137 | 21 | 137 | 5.58e-24 | 95.9 |
| MS.gene043711.t1 | MTR_4g119990 | 43.810 | 105 | 58 | 1 | 11 | 114 | 13 | 117 | 2.23e-22 | 93.6 |
| MS.gene043711.t1 | MTR_3g005490 | 33.929 | 112 | 71 | 1 | 13 | 124 | 21 | 129 | 1.07e-21 | 90.1 |
| MS.gene043711.t1 | MTR_1g035640 | 47.475 | 99 | 46 | 2 | 13 | 111 | 9 | 101 | 1.56e-21 | 92.0 |
| MS.gene043711.t1 | MTR_1g034240 | 40.404 | 99 | 59 | 0 | 13 | 111 | 7 | 105 | 1.95e-21 | 91.3 |
| MS.gene043711.t1 | MTR_4g068320 | 30.909 | 165 | 110 | 2 | 13 | 173 | 6 | 170 | 3.45e-21 | 90.5 |
| MS.gene043711.t1 | MTR_5g070440 | 36.275 | 102 | 65 | 0 | 13 | 114 | 21 | 122 | 3.84e-21 | 88.6 |
| MS.gene043711.t1 | MTR_1g050845 | 37.589 | 141 | 79 | 3 | 10 | 143 | 6 | 144 | 6.65e-21 | 90.5 |
| MS.gene043711.t1 | MTR_3g005460 | 36.275 | 102 | 65 | 0 | 13 | 114 | 25 | 126 | 4.44e-20 | 87.8 |
| MS.gene043711.t1 | MTR_3g005460 | 36.190 | 105 | 66 | 1 | 11 | 114 | 260 | 364 | 1.40e-18 | 83.6 |
| MS.gene043711.t1 | MTR_1g035620 | 41.176 | 102 | 58 | 1 | 10 | 111 | 6 | 105 | 6.90e-20 | 87.0 |
| MS.gene043711.t1 | MTR_1g035650 | 39.216 | 102 | 60 | 1 | 10 | 111 | 6 | 105 | 1.34e-19 | 83.2 |
| MS.gene043711.t1 | MTR_3g005495 | 39.216 | 102 | 62 | 0 | 13 | 114 | 243 | 344 | 1.59e-19 | 86.3 |
| MS.gene043711.t1 | MTR_3g005495 | 37.209 | 86 | 54 | 0 | 29 | 114 | 29 | 114 | 3.37e-18 | 82.4 |
| MS.gene043711.t1 | MTR_1g035480 | 35.714 | 140 | 79 | 3 | 9 | 148 | 13 | 141 | 1.91e-19 | 82.0 |
| MS.gene043711.t1 | MTR_1g035570 | 44.444 | 90 | 48 | 1 | 22 | 111 | 14 | 101 | 2.98e-19 | 85.1 |
| MS.gene043711.t1 | MTR_1g033740 | 30.994 | 171 | 104 | 4 | 9 | 177 | 18 | 176 | 3.91e-19 | 81.6 |
| MS.gene043711.t1 | MTR_1g035440 | 39.815 | 108 | 58 | 2 | 11 | 114 | 13 | 117 | 1.03e-18 | 81.6 |
| MS.gene043711.t1 | MTR_3g005420 | 29.412 | 187 | 106 | 4 | 13 | 197 | 289 | 451 | 4.06e-18 | 82.4 |
| MS.gene043711.t1 | MTR_3g005420 | 28.788 | 132 | 84 | 3 | 13 | 135 | 40 | 170 | 3.13e-14 | 70.9 |
| MS.gene043711.t1 | MTR_6g061070 | 33.835 | 133 | 83 | 3 | 7 | 139 | 12 | 139 | 8.77e-17 | 78.2 |
| MS.gene043711.t1 | MTR_1g034210 | 36.735 | 98 | 62 | 0 | 13 | 110 | 7 | 104 | 1.06e-16 | 77.4 |
| MS.gene043711.t1 | MTR_1g034210 | 36.735 | 98 | 62 | 0 | 13 | 110 | 7 | 104 | 1.42e-16 | 77.4 |
| MS.gene043711.t1 | MTR_3g005440 | 35.227 | 88 | 57 | 0 | 27 | 114 | 34 | 121 | 2.29e-16 | 77.0 |
| MS.gene043711.t1 | MTR_3g005440 | 33.673 | 98 | 65 | 0 | 17 | 114 | 246 | 343 | 2.42e-14 | 71.2 |
| MS.gene043711.t1 | MTR_1g035500 | 32.667 | 150 | 88 | 4 | 7 | 156 | 19 | 155 | 4.34e-16 | 73.6 |
| MS.gene043711.t1 | MTR_1g035510 | 34.884 | 129 | 69 | 4 | 28 | 156 | 1 | 114 | 2.65e-15 | 72.0 |
| MS.gene043711.t1 | MTR_1g035470 | 34.884 | 129 | 70 | 5 | 28 | 156 | 1 | 115 | 1.35e-14 | 68.2 |
| MS.gene043711.t1 | MTR_1g035520 | 42.697 | 89 | 48 | 2 | 28 | 116 | 87 | 172 | 2.52e-14 | 70.9 |
| MS.gene043711.t1 | MTR_3g005420 | 28.788 | 132 | 84 | 3 | 13 | 135 | 21 | 151 | 4.00e-14 | 70.5 |
| MS.gene043711.t1 | MTR_1g021410 | 26.131 | 199 | 130 | 4 | 14 | 200 | 23 | 216 | 4.90e-14 | 70.1 |
| MS.gene043711.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 6.07e-14 | 69.3 |
| MS.gene043711.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 7.25e-14 | 69.3 |
| MS.gene043711.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 1.36e-13 | 68.9 |
| MS.gene043711.t1 | MTR_1g021440 | 33.673 | 98 | 64 | 1 | 6 | 103 | 16 | 112 | 1.38e-13 | 68.9 |
| MS.gene043711.t1 | MTR_1g021400 | 31.959 | 97 | 66 | 0 | 11 | 107 | 28 | 124 | 1.72e-13 | 68.6 |
| MS.gene043711.t1 | MTR_1g021360 | 36.905 | 84 | 53 | 0 | 24 | 107 | 193 | 276 | 4.88e-13 | 67.4 |
| MS.gene043711.t1 | MTR_1g021360 | 35.870 | 92 | 58 | 1 | 11 | 102 | 24 | 114 | 2.77e-12 | 65.1 |
| MS.gene043711.t1 | MTR_1g021320 | 28.859 | 149 | 97 | 2 | 11 | 153 | 23 | 168 | 7.50e-13 | 67.0 |
| MS.gene043711.t1 | MTR_1g021320 | 33.333 | 90 | 59 | 1 | 14 | 103 | 184 | 272 | 2.88e-12 | 65.5 |
| MS.gene043711.t1 | MTR_1g021350 | 31.915 | 94 | 64 | 0 | 14 | 107 | 22 | 115 | 1.35e-12 | 65.9 |
| MS.gene043711.t1 | MTR_1g021380 | 36.264 | 91 | 54 | 1 | 16 | 102 | 20 | 110 | 2.76e-12 | 65.1 |
| MS.gene043711.t1 | MTR_1g021435 | 31.633 | 98 | 67 | 0 | 6 | 103 | 15 | 112 | 5.04e-12 | 64.3 |
| MS.gene043711.t1 | MTR_1g021290 | 34.444 | 90 | 58 | 1 | 14 | 103 | 157 | 245 | 2.28e-11 | 62.4 |
| MS.gene043711.t1 | MTR_1g021270 | 34.146 | 82 | 54 | 0 | 27 | 108 | 29 | 110 | 5.91e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043711.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 1.40e-24 | 99.0 |
| MS.gene043711.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 1.88e-24 | 99.4 |
| MS.gene043711.t1 | AT4G01580 | 40.870 | 115 | 67 | 1 | 3 | 116 | 19 | 133 | 2.13e-24 | 95.5 |
| MS.gene043711.t1 | AT1G49475 | 39.516 | 124 | 72 | 2 | 12 | 133 | 33 | 155 | 2.32e-24 | 95.1 |
| MS.gene043711.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 9.01e-23 | 91.3 |
| MS.gene043711.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 1.22e-22 | 91.3 |
| MS.gene043711.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 29 | 116 | 9 | 96 | 2.52e-18 | 79.0 |
| MS.gene043711.t1 | AT3G53310 | 34.314 | 102 | 65 | 2 | 3 | 104 | 2 | 101 | 8.80e-13 | 65.9 |
Find 29 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATGGAAATTAAATT+TGG | 0.194062 | 7.4:-52626520 | MS.gene043711:CDS |
| TTTCATCAACCATGTGAAAT+TGG | 0.211929 | 7.4:-52626276 | MS.gene043711:CDS |
| TAAATAGTGATGGCAAAATA+TGG | 0.289847 | 7.4:-52626497 | MS.gene043711:CDS |
| GAAAGGAAAATTTATCTCTA+AGG | 0.298982 | 7.4:+52626359 | None:intergenic |
| CCTCTTTAGCTGCAACTCTT+TGG | 0.301743 | 7.4:+52626337 | None:intergenic |
| AGACTCCAAATGGTGCAAAA+TGG | 0.337543 | 7.4:-52626533 | MS.gene043711:CDS |
| CGGTGGAACACGATTTCTTC+TGG | 0.343331 | 7.4:-52625924 | None:intergenic |
| TGGCAAAATATGGTTTGAAA+AGG | 0.393696 | 7.4:-52626487 | MS.gene043711:CDS |
| CCAAAGAGTTGCAGCTAAAG+AGG | 0.405343 | 7.4:-52626337 | MS.gene043711:CDS |
| AAATATGGTTTGAAAAGGGT+TGG | 0.440218 | 7.4:-52626482 | MS.gene043711:CDS |
| GTTGCAGCTAAAGAGGTATC+TGG | 0.442534 | 7.4:-52626330 | MS.gene043711:CDS |
| TGAAGTTGAGAAATTGCAAA+AGG | 0.487851 | 7.4:-52626238 | MS.gene043711:CDS |
| GTTGTCCATGCGTGCATCAT+CGG | 0.487923 | 7.4:-52625944 | MS.gene043711:CDS |
| GGCAAAATATGGTTTGAAAA+GGG | 0.493730 | 7.4:-52626486 | MS.gene043711:CDS |
| ATATATCTAAAGACTCCAAA+TGG | 0.494837 | 7.4:-52626543 | MS.gene043711:CDS |
| TTAAATTTGGTAAATAGTGA+TGG | 0.506736 | 7.4:-52626507 | MS.gene043711:CDS |
| TTAGCTGCAACTCTTTGGAA+AGG | 0.521764 | 7.4:+52626342 | None:intergenic |
| CATATCTGAAAAGCACAAGA+TGG | 0.540339 | 7.4:+52626424 | None:intergenic |
| CCATTGCTTCCAATTTCACA+TGG | 0.553545 | 7.4:+52626267 | None:intergenic |
| CTTGCTCAAAATCTTCATGA+AGG | 0.562390 | 7.4:-52627481 | MS.gene043711:CDS |
| CCATGTGAAATTGGAAGCAA+TGG | 0.565270 | 7.4:-52626267 | MS.gene043711:CDS |
| GAGTATCATTCTCTAGCTCA+TGG | 0.575939 | 7.4:-52626447 | MS.gene043711:CDS |
| TTTGTGGAGAAATATGGAGA+AGG | 0.578281 | 7.4:-52626579 | MS.gene043711:CDS |
| GCATGGACAACAACAAAGGA+TGG | 0.583179 | 7.4:+52625956 | None:intergenic |
| TTCCACCGATGATGCACGCA+TGG | 0.588229 | 7.4:+52625939 | None:intergenic |
| GTCCATGCGTGCATCATCGG+TGG | 0.603761 | 7.4:-52625941 | MS.gene043711:CDS |
| TGGTTGATGAAATTCAAAAG+AGG | 0.621012 | 7.4:+52626287 | None:intergenic |
| GCACGCATGGACAACAACAA+AGG | 0.653777 | 7.4:+52625952 | None:intergenic |
| CATGCTGACAGAGAGTCCAG+AGG | 0.757168 | 7.4:-52626201 | MS.gene043711:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAGGAAAGAAAA+TGG | + | chr7.4:52626269-52626288 | None:intergenic | 15.0% |
| !! | AATAATAGAATCTAAGTAAA+AGG | + | chr7.4:52626014-52626033 | None:intergenic | 15.0% |
| !! | TGAAAGAAAAGAAAAAATTA+AGG | + | chr7.4:52626280-52626299 | None:intergenic | 15.0% |
| !!! | CATTTGAGTTTTATATTTAA+GGG | - | chr7.4:52626392-52626411 | MS.gene043711:CDS | 15.0% |
| !! | AGAAACATTCAAAAAACTAT+GGG | - | chr7.4:52626677-52626696 | MS.gene043711:intron | 20.0% |
| !! | ATAACTATCATGTATATTTG+TGG | + | chr7.4:52626564-52626583 | None:intergenic | 20.0% |
| !! | TAAGAAAAAAAAAATGCACA+TGG | - | chr7.4:52626362-52626381 | MS.gene043711:CDS | 20.0% |
| !! | TATACATGATAGTTATCTAT+CGG | - | chr7.4:52626568-52626587 | MS.gene043711:CDS | 20.0% |
| !! | TGAAAACTAAGTTATTATTG+TGG | - | chr7.4:52626766-52626785 | MS.gene043711:intron | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | chr7.4:52626937-52626956 | MS.gene043711:intron | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | chr7.4:52626950-52626969 | MS.gene043711:intron | 20.0% |
| !! | TTGTTAAATAAATCTTTAGC+AGG | - | chr7.4:52627342-52627361 | MS.gene043711:intron | 20.0% |
| !! | TTTCAACAAGTAATTAACTT+GGG | - | chr7.4:52626295-52626314 | MS.gene043711:CDS | 20.0% |
| !!! | AATAACTTAGTTTTCAAATC+TGG | + | chr7.4:52626762-52626781 | None:intergenic | 20.0% |
| !!! | GCAATTTTTTTTTTCTTCAA+AGG | - | chr7.4:52626414-52626433 | MS.gene043711:CDS | 20.0% |
| !!! | GCATTTGAGTTTTATATTTA+AGG | - | chr7.4:52626391-52626410 | MS.gene043711:CDS | 20.0% |
| !!! | TTTTTTCTTATAATATGGGA+CGG | + | chr7.4:52626352-52626371 | None:intergenic | 20.0% |
| ! | AAAAAGTTTGTGGAGAAATA+TGG | - | chr7.4:52626872-52626891 | MS.gene043711:intron | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.4:52626914-52626933 | MS.gene043711:intron | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+CGG | + | chr7.4:52625960-52625979 | None:intergenic | 25.0% |
| ! | CTTTCAACAAGTAATTAACT+TGG | - | chr7.4:52626294-52626313 | MS.gene043711:CDS | 25.0% |
| ! | GAAAGGAAAATTTATCTCTA+AGG | + | chr7.4:52627101-52627120 | None:intergenic | 25.0% |
| ! | GAGAAACATTCAAAAAACTA+TGG | - | chr7.4:52626676-52626695 | MS.gene043711:intron | 25.0% |
| ! | TAAATAGTGATGGCAAAATA+TGG | - | chr7.4:52626960-52626979 | MS.gene043711:intron | 25.0% |
| ! | TCTATCATAAAACACATTAG+TGG | + | chr7.4:52626469-52626488 | None:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | chr7.4:52627409-52627428 | None:intergenic | 25.0% |
| ! | TTATATCATGCATGCTAATT+TGG | - | chr7.4:52626826-52626845 | MS.gene043711:intron | 25.0% |
| !! | AATTAACTTGGGTAAGATAT+TGG | - | chr7.4:52626306-52626325 | MS.gene043711:CDS | 25.0% |
| !! | TGAAAAAACTTCTCTTTTTG+AGG | - | chr7.4:52627054-52627073 | MS.gene043711:intron | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | chr7.4:52627408-52627427 | MS.gene043711:intron | 25.0% |
| !!! | CTATCGGATTTACTTTTTTT+GGG | - | chr7.4:52626584-52626603 | MS.gene043711:CDS | 25.0% |
| !!! | TATTTCTCCACAAACTTTTT+TGG | + | chr7.4:52626872-52626891 | None:intergenic | 25.0% |
| !!! | TCTATCGGATTTACTTTTTT+TGG | - | chr7.4:52626583-52626602 | MS.gene043711:CDS | 25.0% |
| !!! | TTGAGTTAGATTCTTTTTTC+AGG | - | chr7.4:52626049-52626068 | MS.gene043711:intron | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | chr7.4:52626975-52626994 | MS.gene043711:intron | 30.0% | |
| ACTACAAGATGTGTATTTAG+AGG | - | chr7.4:52626628-52626647 | MS.gene043711:intron | 30.0% | |
| ATTATCTTGAAAAAGCGGAT+TGG | + | chr7.4:52625955-52625974 | None:intergenic | 30.0% | |
| CTACAAGATGTGTATTTAGA+GGG | - | chr7.4:52626629-52626648 | MS.gene043711:intron | 30.0% | |
| GATGATACCAAAAAAGTTTG+TGG | - | chr7.4:52626862-52626881 | MS.gene043711:intron | 30.0% | |
| GGAAAGAAAATGGTTCAAAT+TGG | + | chr7.4:52626259-52626278 | None:intergenic | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | chr7.4:52626971-52626990 | MS.gene043711:intron | 30.0% | |
| GTTAAAAGTCTCACATTACT+TGG | - | chr7.4:52626798-52626817 | MS.gene043711:intron | 30.0% | |
| TAGAGGGAATTAGTGATATT+GGG | - | chr7.4:52626645-52626664 | MS.gene043711:intron | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | chr7.4:52627219-52627238 | MS.gene043711:intron | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | chr7.4:52626970-52626989 | MS.gene043711:intron | 30.0% | |
| TTAGAGGGAATTAGTGATAT+TGG | - | chr7.4:52626644-52626663 | MS.gene043711:intron | 30.0% | |
| TTTCATCAACCATGTGAAAT+TGG | - | chr7.4:52627181-52627200 | MS.gene043711:intron | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | chr7.4:52626932-52626951 | None:intergenic | 30.0% |
| !! | TGGTTGATGAAATTCAAAAG+AGG | + | chr7.4:52627173-52627192 | None:intergenic | 30.0% |
| AAGAATGTCACAAGACTTGT+TGG | - | chr7.4:52626172-52626191 | MS.gene043711:intron | 35.0% | |
| ACATTCAAAAAACTATGGGC+TGG | - | chr7.4:52626681-52626700 | MS.gene043711:intron | 35.0% | |
| AGAGGGAATTAGTGATATTG+GGG | - | chr7.4:52626646-52626665 | MS.gene043711:intron | 35.0% | |
| ATTTGTAGCCCAATGATACT+AGG | - | chr7.4:52626501-52626520 | MS.gene043711:CDS | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | chr7.4:52625976-52625995 | MS.gene043711:CDS | 35.0% | |
| GACACAAAATTGTATACCTC+TGG | + | chr7.4:52627275-52627294 | None:intergenic | 35.0% | |
| GTATCATTGGGCTACAAATT+TGG | + | chr7.4:52626500-52626519 | None:intergenic | 35.0% | |
| TTACTCATCTATGTCGCTAA+TGG | - | chr7.4:52626225-52626244 | MS.gene043711:CDS | 35.0% | |
| TTTCTTATAATATGGGACGG+AGG | + | chr7.4:52626349-52626368 | None:intergenic | 35.0% | |
| TTTGTAGCCCAATGATACTA+GGG | - | chr7.4:52626502-52626521 | MS.gene043711:CDS | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | - | chr7.4:52626878-52626897 | MS.gene043711:intron | 35.0% | |
| ! | ACTTGTTGGTCATAGTTTGT+GGG | - | chr7.4:52626186-52626205 | MS.gene043711:intron | 35.0% |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | chr7.4:52627036-52627055 | None:intergenic | 35.0% |
| !! | ACTTAGTTTTCAAATCTGGC+CGG | + | chr7.4:52626758-52626777 | None:intergenic | 35.0% |
| !! | TTTTTGGGAAAACGCACATT+CGG | - | chr7.4:52626599-52626618 | MS.gene043711:intron | 35.0% |
| AGAAACGCCCTAGTATCATT+GGG | + | chr7.4:52626512-52626531 | None:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | chr7.4:52626924-52626943 | MS.gene043711:intron | 40.0% | |
| AGCAGCCTGTTTACTCAATT+CGG | - | chr7.4:52626704-52626723 | MS.gene043711:intron | 40.0% | |
| CCATGTGAAATTGGAAGCAA+TGG | - | chr7.4:52627190-52627209 | MS.gene043711:intron | 40.0% | |
| CCATTGCTTCCAATTTCACA+TGG | + | chr7.4:52627193-52627212 | None:intergenic | 40.0% | |
| GAGGGAATTAGTGATATTGG+GGG | - | chr7.4:52626647-52626666 | MS.gene043711:intron | 40.0% | |
| TCATTGGGCTACAAATTTGG+TGG | + | chr7.4:52626497-52626516 | None:intergenic | 40.0% | |
| TGGTGCCTTAGAGATATTGA+GGG | + | chr7.4:52626544-52626563 | None:intergenic | 40.0% | |
| ! | ATACTAGGGCGTTTCTCTTT+AGG | - | chr7.4:52626516-52626535 | MS.gene043711:CDS | 40.0% |
| ! | GAGTATCATTCTCTAGCTCA+TGG | - | chr7.4:52627010-52627029 | MS.gene043711:intron | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+AGG | + | chr7.4:52627118-52627137 | None:intergenic | 40.0% |
| ! | TTGGTCATAGTTTGTGGGTT+AGG | - | chr7.4:52626191-52626210 | MS.gene043711:intron | 40.0% |
| !! | GACTTGTTGGTCATAGTTTG+TGG | - | chr7.4:52626185-52626204 | MS.gene043711:intron | 40.0% |
| !! | TTGGCTTGGACAAGTTAGTT+CGG | - | chr7.4:52626732-52626751 | MS.gene043711:intron | 40.0% |
| CCAAAGAGTTGCAGCTAAAG+AGG | - | chr7.4:52627120-52627139 | MS.gene043711:intron | 45.0% | |
| CCTCTTTAGCTGCAACTCTT+TGG | + | chr7.4:52627123-52627142 | None:intergenic | 45.0% | |
| CTATGTCGCTAATGGCTTCA+TGG | - | chr7.4:52626233-52626252 | MS.gene043711:CDS | 45.0% | |
| GAGAAACGCCCTAGTATCAT+TGG | + | chr7.4:52626513-52626532 | None:intergenic | 45.0% | |
| GCATGGACAACAACAAAGGA+TGG | + | chr7.4:52627504-52627523 | None:intergenic | 45.0% | |
| GGTGCCTTAGAGATATTGAG+GGG | + | chr7.4:52626543-52626562 | None:intergenic | 45.0% | |
| GTGCCTTAGAGATATTGAGG+GGG | + | chr7.4:52626542-52626561 | None:intergenic | 45.0% | |
| GTGGTGCCTTAGAGATATTG+AGG | + | chr7.4:52626545-52626564 | None:intergenic | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | chr7.4:52626713-52626732 | MS.gene043711:intron | 45.0% | |
| ! | ACTAACTTGTCCAAGCCAAG+TGG | + | chr7.4:52626731-52626750 | None:intergenic | 45.0% |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | chr7.4:52626730-52626749 | None:intergenic | 45.0% |
| !! | GTTGCAGCTAAAGAGGTATC+TGG | - | chr7.4:52627127-52627146 | MS.gene043711:intron | 45.0% |
| !!! | ATTTTTTTTTTCTTATAATA+TGG | + | chr7.4:52626357-52626376 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTCTTATAATAT+GGG | + | chr7.4:52626356-52626375 | None:intergenic | 5.0% |
| AGGCCCCCTCAATATCTCTA+AGG | - | chr7.4:52626536-52626555 | MS.gene043711:CDS | 50.0% | |
| CTTGGACAAGTTAGTTCGGC+CGG | - | chr7.4:52626736-52626755 | MS.gene043711:intron | 50.0% | |
| GCACGCATGGACAACAACAA+AGG | + | chr7.4:52627508-52627527 | None:intergenic | 50.0% | |
| GTGGGCCGAATTGAGTAAAC+AGG | + | chr7.4:52626712-52626731 | None:intergenic | 50.0% | |
| GTTGTCCATGCGTGCATCAT+CGG | - | chr7.4:52627513-52627532 | MS.gene043711:CDS | 50.0% | |
| CATGCTGACAGAGAGTCCAG+AGG | - | chr7.4:52627256-52627275 | MS.gene043711:intron | 55.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | - | chr7.4:52626718-52626737 | MS.gene043711:intron | 55.0% | |
| TTCCACCGATGATGCACGCA+TGG | + | chr7.4:52627521-52627540 | None:intergenic | 55.0% | |
| GTCCATGCGTGCATCATCGG+TGG | - | chr7.4:52627516-52627535 | MS.gene043711:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52625925 | 52627554 | 52625925 | ID=MS.gene043711 |
| chr7.4 | mRNA | 52625925 | 52627554 | 52625925 | ID=MS.gene043711.t1;Parent=MS.gene043711 |
| chr7.4 | exon | 52627474 | 52627554 | 52627474 | ID=MS.gene043711.t1.exon1;Parent=MS.gene043711.t1 |
| chr7.4 | CDS | 52627474 | 52627554 | 52627474 | ID=cds.MS.gene043711.t1;Parent=MS.gene043711.t1 |
| chr7.4 | exon | 52626202 | 52626616 | 52626202 | ID=MS.gene043711.t1.exon2;Parent=MS.gene043711.t1 |
| chr7.4 | CDS | 52626202 | 52626616 | 52626202 | ID=cds.MS.gene043711.t1;Parent=MS.gene043711.t1 |
| chr7.4 | exon | 52625925 | 52626049 | 52625925 | ID=MS.gene043711.t1.exon3;Parent=MS.gene043711.t1 |
| chr7.4 | CDS | 52625925 | 52626049 | 52625925 | ID=cds.MS.gene043711.t1;Parent=MS.gene043711.t1 |
| Gene Sequence |
| Protein sequence |
