AlfalfaGEDB | MS.gene043712

M. sativa cultivar XinJiangDaYe / MS.gene043712

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043712.t1	AES78884.2	81.2	271	43	2	1	263	2	272	5.20E-119	438

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043712.t1	Q8L3W1	28.3	311	161	7	1	258	22	323	7.3e-21	103.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043712.t1	G7KVV7	81.2	271	43	2	1	263	2	272	3.7e-119	438.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene043712.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043712.t1	MTR_7g050590	75.248	303	59	4	1	295	2	296	1.76e-155	441
MS.gene043712.t1	MTR_7g050560	72.348	264	62	4	1	263	29	282	4.30e-131	380
MS.gene043712.t1	MTR_7g050580	67.537	268	68	3	1	263	29	282	8.83e-122	357
MS.gene043712.t1	MTR_7g050710	66.544	272	81	5	1	263	29	299	6.64e-121	355
MS.gene043712.t1	MTR_3g098790	64.727	275	84	5	1	268	29	297	6.91e-118	347
MS.gene043712.t1	MTR_7g050720	56.376	298	107	8	1	280	26	318	3.72e-102	306
MS.gene043712.t1	MTR_1g035460	35.959	292	144	11	1	263	2	279	2.64e-46	164
MS.gene043712.t1	MTR_1g108780	34.859	284	144	11	1	260	13	279	7.87e-44	159
MS.gene043712.t1	MTR_8g103940	35.231	281	146	9	1	260	55	320	1.48e-41	154
MS.gene043712.t1	MTR_7g050640	67.059	85	28	0	1	85	29	113	2.64e-33	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043712.t1	AT4G01580	44.318	88	49	0	1	88	46	133	7.79e-18	81.6
MS.gene043712.t1	AT3G18960	44.318	88	49	0	1	88	46	133	1.00e-17	81.6
MS.gene043712.t1	AT3G18960	44.318	88	49	0	1	88	46	133	1.11e-17	81.6
MS.gene043712.t1	AT3G18960	44.318	88	49	0	1	88	9	96	1.38e-17	80.5
MS.gene043712.t1	AT1G49475	36.634	101	63	1	1	101	50	149	3.14e-17	80.1
MS.gene043712.t1	AT4G33280	29.078	282	164	13	1	260	39	306	5.37e-17	82.0
MS.gene043712.t1	AT3G18990	44.578	83	46	0	1	83	22	104	9.97e-17	81.3
MS.gene043712.t1	AT3G18990	44.578	83	46	0	1	83	22	104	1.02e-16	81.6
MS.gene043712.t1	AT5G18000	26.038	265	169	9	17	269	19	268	5.32e-16	78.2
MS.gene043712.t1	AT5G18000	26.038	265	169	9	17	269	54	303	1.30e-15	77.8

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Find 70 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGGTTTGAAAGGGGT+TGG	0.476509	7.4:-52635991	MS.gene043712:CDS
AAGTGCGATATGCTTCATTC+GGG	0.539617	7.4:+52634157	None:intergenic
AATGATGCCAAGAAAGTTTG+TGG	0.433802	7.4:-52636104	None:intergenic
AATGTCTACAGGTTGATCTT+TGG	0.423412	7.4:+52634073	None:intergenic
AATTTCAACTCACAGGTGGA+TGG	0.575225	7.4:-52634741	MS.gene043712:CDS
AATTTCCACTTTGCACCATT+TGG	0.366202	7.4:+52636037	None:intergenic
ACGTGGTTGATGAAGTTCAA+AGG	0.562344	7.4:+52635766	None:intergenic
ACGTTTATTTCCTTGACCAT+TGG	0.495512	7.4:+52635835	None:intergenic
AGAAAGTTTGTGGAGAAATA+TGG	0.293086	7.4:-52636094	MS.gene043712:CDS
AGACACCAAATGGTGCAAAG+TGG	0.639479	7.4:-52636042	MS.gene043712:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGCTACTTAAGGATAA+AGG	-	chr7.4:52634204-52634223	MS.gene043712:CDS	30.0%
AAGTAGCTTCTTCTTTCATT+TGG	+	chr7.4:52634196-52634215	None:intergenic	30.0%
AAGTATTTGAATAACGCTTG+AGG	-	chr7.4:52633480-52633499	MS.gene043712:intron	30.0%
AATCTAGTAAAGAGTAGAGA+AGG	+	chr7.4:52633296-52633315	None:intergenic	30.0%
ACCATTTAGTGTGATTGAAA+GGG	+	chr7.4:52634866-52634885	None:intergenic	30.0%
AGAAAGTTTGTGGAGAAATA+TGG	-	chr7.4:52632586-52632605	MS.gene043712:CDS	30.0%
AGAAGCTACTTAAGGATAAA+GGG	-	chr7.4:52634205-52634224	MS.gene043712:CDS	30.0%
AGTATTTGAATAACGCTTGA+GGG	-	chr7.4:52633481-52633500	MS.gene043712:intron	30.0%
ATGAAAGAAGAAGCTACTTA+AGG	-	chr7.4:52634197-52634216	MS.gene043712:CDS	30.0%
ATGGGAAAATATGGTTTGAA+AGG	-	chr7.4:52632683-52632702	MS.gene043712:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	52632580	52636122	52632580	ID=MS.gene043712
chr7.4	mRNA	52632580	52636122	52632580	ID=MS.gene043712.t1;Parent=MS.gene043712
chr7.4	exon	52635684	52636122	52635684	ID=MS.gene043712.t1.exon1;Parent=MS.gene043712.t1
chr7.4	CDS	52635684	52636122	52635684	ID=cds.MS.gene043712.t1;Parent=MS.gene043712.t1
chr7.4	exon	52635459	52635580	52635459	ID=MS.gene043712.t1.exon2;Parent=MS.gene043712.t1
chr7.4	CDS	52635459	52635580	52635459	ID=cds.MS.gene043712.t1;Parent=MS.gene043712.t1
chr7.4	exon	52634664	52634893	52634664	ID=MS.gene043712.t1.exon3;Parent=MS.gene043712.t1
chr7.4	CDS	52634664	52634893	52634664	ID=cds.MS.gene043712.t1;Parent=MS.gene043712.t1
chr7.4	exon	52634047	52634265	52634047	ID=MS.gene043712.t1.exon4;Parent=MS.gene043712.t1
chr7.4	CDS	52634047	52634265	52634047	ID=cds.MS.gene043712.t1;Parent=MS.gene043712.t1
chr7.4	exon	52632580	52632853	52632580	ID=MS.gene043712.t1.exon5;Parent=MS.gene043712.t1
chr7.4	CDS	52632580	52632853	52632580	ID=cds.MS.gene043712.t1;Parent=MS.gene043712.t1

Gene Sequence

>MS.gene043712

ATGCCAAGAAAGTTTGTGGAGAAATATGGAGAAGGTTTACCAAAAGCTATATATCTAAAGACACCAAATGGTGCAAAGTGGAAATTAAATTTGGTAAAAAGTGATGGGAAAATATGGTTTGAAAGGGGTTGGAATGAATTTGCAGAGTATAATTCTCTAGCTCATGGTCATCTCCTACTTTTCAAATATCAAAGCAATTCTCATTTTCTTGTGCAAATCTTTGAAAAAAGTGCCTTAGAGATGAGTTACCCTTTCCAACGAGTTTCCAATGGTCAAGGAAATAAACGTTCAAATGGTGAACATTGTAGAGCATCTCAAAAGAGAAATGTTAACTCCTTTGAACTTCATCAACCACGTGAAATTGGAAGCAGTAGTTGTTTTAGAGTTGGAAAACTGCCGAAGGTAGCATCTTTGCATCATACTGACAGAGAGTCCAAAGGTATAAGATTGTGGCTTCATTGTGTCATCAAAGTTTTAGAAATGAACATGAAAGATGATCATGATTCATGAAATATTATCCTTATTGTGTTCCAATTTTGCAGGGAAAGAAGTGATTACTGCTAAGAGAGTTACAGCTCTTGAAAGAGCACAATCTTTCAAAACATGTATTCCATCCTTTGCTGTTGTCATGCGTGCATCATACGTTGAACATCATTTTCTACTGGTAATTAAGTTTCAATGACATATTTGTCTTGTAGAATGAATAACCAAATCCTTCTCTACTCTTTACTAGATTACGGCGTGAAAAATATATATTGACTATCTAAAAATAATTCAAAAACTATGTATGCACCAAGGATAATTAGAATATAATTCAGAGTTGTTAGAGAAGTTACTTAGTTATTTGATTATTTTGTTAGGTGATTGATAGGTACTGTTGTTATTTTGTTTATTCTGGACAAGTATTTGAATAACGCTTGAGGGGAGGGGATAATTTTGTTTAAACTAGTTTTGTGACTGATTAATACATATTTTCCGATCTTGATTAATACACATTTTCTGTTTTCTTTCTCTTTTAATCTTTCCATTGATACCAACTGGTCCCTGTTGAGAAATTGTGCCCAGCTCAAATGGACAATCCTAACAAGTGACATCATGATTAGATAACTATGTAAAAAAACACTACTAATGCATAGTTCTTCATATTAAATCATTTAAAAAATTGTACTTCACGACAAGAACTTTCGATTTTTTATTCATTAACATTTGTCTTTTCTTTTACTTGGCAGAATATACCACGTTCGTTTGGTAATAGACACTTTGATTTGGATAAGAAAAGAGGAGATATTCATTTTCAGGTGTTAAATGAAGGAGTTTGGACTGCAAGGTTTTCTATCAAGAAGTGCAGTAAAGGACTAAAATTTCAACTCACAGGTGGATGGAAGGCATTTGCAGAGGAAAATAACTTGAAAGTTGGCGATGTTTGCAAATTTGAGCTCATCTCTAGTACTATACTTATGTTCATTGTTCACATCTTTAGAGAGACAAACAACAACACCACCAATTGTTCTTCATCTCAAAGTAGGATCAATTGATTTTTAATTTTCATTTCAAATTATTTCTTTTTTTCATTTGACAAATGAATTTATTCTTCCATCCTATGCAGAATCTTTCCAAATGAAAGAAGAAGCTACTTAAGGATAAAGGGAAAAGGAGTTTTCGATCTTAAGCTTAATTAATGTTGCATGTATCTAGTGCATATGTTTTAGGAACACTACTAAAAAATGAAAACACTATTAGTCTACTTCCTGTAACCAAGAAACTCAAATTTATTTTGCATTTCTAGACATTACTTAATGGTATATGCTATGTTTCTGAATGAACTATTATGCTTGTTTGGTTAACAAACCTTCTCAGTGAATTACATGTCAAAACACCAACTCCTCATCTGTTTTGTGACAACATCGGAGCCATCTACTTATGCTCTAATCCAGTTTTTCACTCCCGAATGAAGCATATCGCACTTGACTATCGTTATGTATGTCAACTTGTTCAATTGGGTCAACTCTGTGTGCTTCACATTTCCACCAAAGATCAACCTGTAGACATTCTCACAATGCCTTTGTCCAGACCCAGGTTCACTTACTTGAGAGACAAGATTGGACTCACCAATTGTGACTCCATCTTGAGGGGGCATAATAGCACATAAGCATCAATATGCTACAACTGTGCACTCATATCAGAATATTTTCCATCATTGCATTGAACTCAATATTCATATTAGAATATTTGACGTTCATTGCATTGACCACAATTGTATCATATTAGAAAGTATTATTAATTCCCTTTCAATCACACTAAATGGTGATTGTCTGTTTGTATCTATATAAAGTACTCCCTCCGTTTCAAAATGAGTGTTGCTTTAGCCAAAAAAATTTGTTTCAAAATGAGTGTCGCTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTCCAATTAATACTTTACACACTACTTCCAAAGTATTACTTTTAAAACTAACCAATAGTTAATAAGGATAATTTGGTAAAATAACTAATCTCTTTCTCTTAATCATTGCATTTCTTAATATGTGTGTAAACACCTAAAACGACACTCATTTTGAAACGGAGGGAGTACCTTGTATCACATATTCATATCAATACAATAAGTTGAATTACTTTAGTAAGGAGCTTTAGGAGATGATAAAAACGAGGTCAGGCCAATGACGTGGCTAGAAATTCGATCGATATAGCTCACATGCATCTCCTCGAAGGTAGATCCCTTTGAGCGGGGGTAGTTGTCATTATATGCTCGCAAAACTAAAGTGATTTATCCTACGTTGATTGTTTACACGTGTCTCATGCGCCCGTAGGATGGAAGGTGACACACCTAGGACATTTGAGAGCGGTTACGTTCATAATCACGTGATTTTTTTTGACATGCTGCGTACCATAAACAGGTAGATGCATACCAGTTTGTGGTACCTTTGTGAATTGGTTCACACAATATGTCCAATAATTCCTTGAAATTGACAAACTGGGGTGAAGATCAAAAAAAGAGTTAGACAAGGTTGAGTAGGAGATATAAAGGAAAACCTCTAGTAGTGCAAATAAAATTTTCATGAAATCTCTTTTAAACTCGTAGAAAGAGAATGTTTTTTTTTTTTTTTTTTTTTGCAAAATAACACCGATAAAAAAAGGAAAAAAGTTAATATAGAAAAAGTTTTGGTAAGTGGATACTAATTTGTTGCTACTAATAGTGTTCTACGTTTGTTTTTGTACTTTCTTGATTAGTAGCCAAAGTACCCCTAACAACACTGGTAAAGATGAGGATGAAAATTACGACACAACAACATCGACACCAATCGCAAACCGTGGAAAAATCATCAAGAAGTATGCTCAGACAGTGAAAAGATCCTCAAAGTCCAAGTCTAAAATTACTATGGACTATCAATCAAATTCAACTCCTCCAGTTATCAATCAAAGTAAAGGAAAAGGTTTACTAGATGACTTGCAGTACAACAAAATTAAGAAAAAATTGTTCTGCAAACCTGAAGAAGATGATGATTGA

Protein sequence

>MS.gene043712.t1

MPRKFVEKYGEGLPKAIYLKTPNGAKWKLNLVKSDGKIWFERGWNEFAEYNSLAHGHLLLFKYQSNSHFLVQIFEKSALEMSYPFQRVSNGQGNKRSNGEHCRASQKRNVNSFELHQPREIGSSSCFRVGKLPKVASLHHTDRESKGKEVITAKRVTALERAQSFKTCIPSFAVVMRASYVEHHFLLNIPRSFGNRHFDLDKKRGDIHFQVLNEGVWTARFSIKKCSKGLKFQLTGGWKAFAEENNLKVGDVCKFELISSTILIELHVKTPTPHLFCDNIGAIYLCSNPVFHSRMKHIALDYRYVCQLVQLGQLCVLHISTKDQPVDILTMPLSRPSQSTPNNTGKDEDENYDTTTSTPIANRGKIIKKYAQTVKRSSKSKSKITMDYQSNSTPPVINQSKGKGLLDDLQYNKIKKKLFCKPEEDDD