Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043714.t1 | XP_003622663.1 | 89.2 | 315 | 34 | 0 | 1 | 315 | 1 | 315 | 4.90E-159 | 570.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043714.t1 | Q8L3W1 | 26.5 | 343 | 175 | 6 | 13 | 290 | 6 | 336 | 1.8e-24 | 114.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043714.t1 | G7KVV4 | 89.2 | 315 | 34 | 0 | 1 | 315 | 1 | 315 | 3.6e-159 | 570.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043714.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043714.t1 | MTR_7g050560 | 89.206 | 315 | 34 | 0 | 1 | 315 | 1 | 315 | 0.0 | 582 |
| MS.gene043714.t1 | MTR_7g050590 | 76.109 | 293 | 53 | 4 | 28 | 303 | 1 | 293 | 6.13e-161 | 451 |
| MS.gene043714.t1 | MTR_7g050580 | 67.273 | 330 | 78 | 5 | 1 | 315 | 1 | 315 | 3.99e-152 | 429 |
| MS.gene043714.t1 | MTR_7g050710 | 65.732 | 321 | 91 | 5 | 1 | 303 | 1 | 320 | 1.66e-143 | 407 |
| MS.gene043714.t1 | MTR_3g098790 | 64.890 | 319 | 89 | 5 | 1 | 303 | 1 | 312 | 2.02e-141 | 402 |
| MS.gene043714.t1 | MTR_7g050720 | 58.917 | 314 | 101 | 7 | 7 | 292 | 4 | 317 | 4.96e-121 | 350 |
| MS.gene043714.t1 | MTR_8g103940 | 37.049 | 305 | 157 | 6 | 11 | 290 | 37 | 331 | 4.32e-53 | 181 |
| MS.gene043714.t1 | MTR_1g035460 | 35.570 | 298 | 146 | 8 | 28 | 290 | 1 | 287 | 2.53e-49 | 169 |
| MS.gene043714.t1 | MTR_1g108780 | 34.247 | 292 | 148 | 7 | 29 | 290 | 13 | 290 | 4.93e-48 | 167 |
| MS.gene043714.t1 | MTR_7g050640 | 64.602 | 113 | 40 | 0 | 1 | 113 | 1 | 113 | 2.55e-43 | 145 |
| MS.gene043714.t1 | MTR_5g044670 | 30.097 | 309 | 178 | 8 | 13 | 297 | 16 | 310 | 3.02e-41 | 146 |
| MS.gene043714.t1 | MTR_3g061370 | 33.564 | 289 | 168 | 9 | 11 | 289 | 7 | 281 | 3.06e-38 | 137 |
| MS.gene043714.t1 | MTR_3g061350 | 33.221 | 298 | 176 | 9 | 1 | 289 | 1 | 284 | 3.65e-38 | 137 |
| MS.gene043714.t1 | MTR_3g061320 | 33.110 | 299 | 153 | 10 | 10 | 289 | 9 | 279 | 1.73e-37 | 135 |
| MS.gene043714.t1 | MTR_3g061310 | 31.475 | 305 | 156 | 10 | 10 | 289 | 9 | 285 | 7.19e-34 | 125 |
| MS.gene043714.t1 | MTR_3g061340 | 31.271 | 291 | 164 | 10 | 10 | 289 | 9 | 274 | 2.67e-33 | 124 |
| MS.gene043714.t1 | MTR_5g070440 | 28.028 | 289 | 162 | 7 | 13 | 293 | 21 | 271 | 1.27e-31 | 119 |
| MS.gene043714.t1 | MTR_1g035620 | 29.630 | 297 | 166 | 8 | 10 | 288 | 6 | 277 | 2.43e-31 | 121 |
| MS.gene043714.t1 | MTR_1g035640 | 33.220 | 295 | 171 | 11 | 12 | 296 | 8 | 286 | 3.14e-31 | 122 |
| MS.gene043714.t1 | MTR_3g005480 | 27.931 | 290 | 153 | 8 | 13 | 293 | 21 | 263 | 6.86e-30 | 114 |
| MS.gene043714.t1 | MTR_1g050845 | 29.268 | 287 | 168 | 7 | 10 | 288 | 6 | 265 | 2.53e-29 | 118 |
| MS.gene043714.t1 | MTR_3g005490 | 27.241 | 290 | 154 | 7 | 13 | 293 | 21 | 262 | 9.31e-29 | 111 |
| MS.gene043714.t1 | MTR_3g061330 | 33.019 | 212 | 103 | 5 | 10 | 201 | 9 | 201 | 1.30e-28 | 110 |
| MS.gene043714.t1 | MTR_6g043890 | 27.922 | 308 | 173 | 8 | 1 | 276 | 1 | 291 | 2.23e-28 | 112 |
| MS.gene043714.t1 | MTR_1g035570 | 30.405 | 296 | 173 | 10 | 12 | 290 | 8 | 287 | 3.63e-28 | 112 |
| MS.gene043714.t1 | MTR_3g061290 | 50.000 | 102 | 49 | 1 | 10 | 111 | 9 | 108 | 3.19e-27 | 105 |
| MS.gene043714.t1 | MTR_6g061070 | 28.660 | 321 | 180 | 10 | 7 | 289 | 12 | 321 | 5.06e-27 | 110 |
| MS.gene043714.t1 | MTR_3g005420 | 28.269 | 283 | 169 | 6 | 13 | 293 | 289 | 539 | 6.72e-26 | 107 |
| MS.gene043714.t1 | MTR_3g005420 | 23.970 | 267 | 148 | 6 | 13 | 277 | 40 | 253 | 4.96e-15 | 75.9 |
| MS.gene043714.t1 | MTR_4g119990 | 28.525 | 305 | 186 | 9 | 11 | 289 | 13 | 311 | 7.39e-26 | 106 |
| MS.gene043714.t1 | MTR_3g005460 | 26.531 | 294 | 172 | 8 | 11 | 293 | 260 | 520 | 1.95e-25 | 106 |
| MS.gene043714.t1 | MTR_3g005460 | 26.071 | 280 | 140 | 8 | 13 | 285 | 25 | 244 | 6.31e-19 | 87.4 |
| MS.gene043714.t1 | MTR_1g021270 | 25.882 | 340 | 174 | 9 | 27 | 299 | 29 | 357 | 2.97e-22 | 97.4 |
| MS.gene043714.t1 | MTR_4g068320 | 40.566 | 106 | 61 | 1 | 12 | 115 | 5 | 110 | 3.31e-21 | 93.6 |
| MS.gene043714.t1 | MTR_4g068320 | 33.083 | 133 | 81 | 4 | 165 | 295 | 267 | 393 | 4.72e-13 | 69.7 |
| MS.gene043714.t1 | MTR_1g021360 | 27.612 | 268 | 177 | 7 | 24 | 277 | 193 | 457 | 8.42e-21 | 92.8 |
| MS.gene043714.t1 | MTR_3g061220 | 43.137 | 102 | 43 | 2 | 10 | 111 | 9 | 95 | 1.01e-20 | 86.3 |
| MS.gene043714.t1 | MTR_1g035480 | 37.589 | 141 | 76 | 3 | 9 | 149 | 13 | 141 | 1.27e-20 | 87.8 |
| MS.gene043714.t1 | MTR_1g035650 | 31.336 | 217 | 110 | 6 | 10 | 206 | 6 | 203 | 4.76e-19 | 84.0 |
| MS.gene043714.t1 | MTR_1g034240 | 39.000 | 100 | 61 | 0 | 12 | 111 | 6 | 105 | 8.98e-19 | 86.7 |
| MS.gene043714.t1 | MTR_1g034240 | 29.333 | 150 | 95 | 4 | 165 | 309 | 272 | 415 | 1.79e-12 | 67.8 |
| MS.gene043714.t1 | MTR_3g005495 | 27.985 | 268 | 141 | 8 | 13 | 277 | 243 | 461 | 3.32e-18 | 85.1 |
| MS.gene043714.t1 | MTR_3g005495 | 37.209 | 86 | 54 | 0 | 29 | 114 | 29 | 114 | 1.92e-16 | 80.1 |
| MS.gene043714.t1 | MTR_1g035500 | 34.194 | 155 | 88 | 4 | 7 | 161 | 19 | 159 | 3.22e-17 | 78.6 |
| MS.gene043714.t1 | MTR_1g035520 | 27.508 | 309 | 163 | 11 | 28 | 288 | 87 | 382 | 5.42e-17 | 81.3 |
| MS.gene043714.t1 | MTR_1g033740 | 34.043 | 141 | 80 | 3 | 9 | 149 | 18 | 145 | 7.90e-17 | 77.8 |
| MS.gene043714.t1 | MTR_3g005440 | 30.508 | 118 | 77 | 1 | 27 | 139 | 34 | 151 | 7.33e-16 | 78.2 |
| MS.gene043714.t1 | MTR_3g005440 | 32.500 | 120 | 80 | 1 | 7 | 125 | 235 | 354 | 7.03e-14 | 72.0 |
| MS.gene043714.t1 | MTR_1g035440 | 40.000 | 105 | 62 | 1 | 11 | 114 | 13 | 117 | 3.87e-15 | 74.3 |
| MS.gene043714.t1 | MTR_3g005420 | 23.970 | 267 | 148 | 6 | 13 | 277 | 21 | 234 | 5.83e-15 | 75.5 |
| MS.gene043714.t1 | MTR_1g035470 | 37.692 | 130 | 66 | 5 | 28 | 157 | 1 | 115 | 1.12e-14 | 70.5 |
| MS.gene043714.t1 | MTR_1g035510 | 36.154 | 130 | 67 | 4 | 28 | 157 | 1 | 114 | 2.77e-14 | 71.2 |
| MS.gene043714.t1 | MTR_1g034210 | 35.000 | 100 | 63 | 1 | 12 | 111 | 6 | 103 | 1.71e-13 | 70.5 |
| MS.gene043714.t1 | MTR_1g034210 | 35.000 | 100 | 63 | 1 | 12 | 111 | 6 | 103 | 2.14e-13 | 70.5 |
| MS.gene043714.t1 | MTR_1g021380 | 29.213 | 178 | 96 | 4 | 12 | 184 | 15 | 167 | 1.70e-11 | 64.7 |
| MS.gene043714.t1 | MTR_1g021320 | 34.074 | 135 | 80 | 4 | 154 | 282 | 463 | 594 | 2.04e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043714.t1 | AT3G18990 | 25.588 | 340 | 188 | 6 | 13 | 293 | 6 | 339 | 1.76e-29 | 115 |
| MS.gene043714.t1 | AT3G18990 | 25.519 | 337 | 186 | 6 | 13 | 290 | 6 | 336 | 2.85e-29 | 114 |
| MS.gene043714.t1 | AT4G01580 | 44.231 | 104 | 58 | 0 | 13 | 116 | 30 | 133 | 6.58e-24 | 97.1 |
| MS.gene043714.t1 | AT3G18960 | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 2.01e-22 | 93.2 |
| MS.gene043714.t1 | AT3G18960 | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 2.06e-22 | 93.2 |
| MS.gene043714.t1 | AT1G49475 | 44.118 | 102 | 56 | 1 | 13 | 114 | 34 | 134 | 3.23e-22 | 92.4 |
| MS.gene043714.t1 | AT3G18960 | 46.591 | 88 | 47 | 0 | 29 | 116 | 9 | 96 | 6.90e-19 | 82.8 |
| MS.gene043714.t1 | AT1G49480 | 30.952 | 126 | 81 | 2 | 165 | 290 | 102 | 221 | 1.13e-12 | 66.6 |
| MS.gene043714.t1 | AT1G49480 | 30.952 | 126 | 81 | 2 | 165 | 290 | 102 | 221 | 1.13e-12 | 66.6 |
| MS.gene043714.t1 | AT1G49480 | 30.952 | 126 | 81 | 2 | 165 | 290 | 102 | 221 | 1.13e-12 | 66.6 |
Find 53 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTAAATGAAGGAATT+TGG | 0.170862 | 7.4:-52645780 | MS.gene043714:CDS |
| GATCAAAATGTGGTCCTTTA+AGG | 0.186650 | 7.4:+52645731 | None:intergenic |
| TATTTCTCCACAAACTTTCT+TGG | 0.217927 | 7.4:+52646924 | None:intergenic |
| TGGAAAATGGAAATTAAATT+TGG | 0.234349 | 7.4:-52646856 | MS.gene043714:CDS |
| TGCAACTTACCATAAGAAAT+TGG | 0.247533 | 7.4:+52646235 | None:intergenic |
| AGACTCCAAATGGTGGAAAA+TGG | 0.283126 | 7.4:-52646869 | MS.gene043714:CDS |
| GAATGGATAATTTATCTCTA+AGG | 0.305393 | 7.4:+52646695 | None:intergenic |
| TTCCATCAACCACGTGAAAT+AGG | 0.308403 | 7.4:-52646609 | MS.gene043714:CDS |
| CCAAAGAGTTGCAGCTAAAA+AGG | 0.311285 | 7.4:-52646673 | MS.gene043714:CDS |
| CGAATCAGGATGACCCTTAA+AGG | 0.312800 | 7.4:-52645745 | MS.gene043714:CDS |
| AGAAAGTTTGTGGAGAAATA+TGG | 0.321466 | 7.4:-52646921 | MS.gene043714:CDS |
| CGTGGAATACCAATTTCTTA+TGG | 0.331154 | 7.4:-52646244 | MS.gene043714:intron |
| ATCCTGATTCGGTACTTTGC+AGG | 0.342698 | 7.4:+52645757 | None:intergenic |
| TTCCTATTTCACGTGGTTGA+TGG | 0.383364 | 7.4:+52646607 | None:intergenic |
| TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7.4:-52645827 | MS.gene043714:CDS |
| CAGAATATACCACGTATGTT+TGG | 0.412403 | 7.4:-52645847 | MS.gene043714:CDS |
| AGGCAAAATATGGTTAGAAA+AGG | 0.421262 | 7.4:-52646823 | MS.gene043714:CDS |
| GTTTATTTGTTGTTAAATGA+AGG | 0.421453 | 7.4:-52645787 | MS.gene043714:CDS |
| GGCCTGCAAAGTACCGAATC+AGG | 0.422243 | 7.4:-52645759 | MS.gene043714:CDS |
| CTTCACCTCAAGAGTTTCAC+TGG | 0.434275 | 7.4:+52647856 | None:intergenic |
| ATCAAAATGTGGTCCTTTAA+GGG | 0.437280 | 7.4:+52645732 | None:intergenic |
| GATGATGCCAAGAAAGTTTG+TGG | 0.440968 | 7.4:-52646931 | MS.gene043714:CDS |
| CTTTAAGGGTCATCCTGATT+CGG | 0.450982 | 7.4:+52645746 | None:intergenic |
| GGCAAAATATGGTTAGAAAA+GGG | 0.459094 | 7.4:-52646822 | MS.gene043714:CDS |
| TATATTTGAAAAGCAGAAGA+TGG | 0.475849 | 7.4:+52646760 | None:intergenic |
| GAGAAGCTTCTTCTTTCACT+TGG | 0.484074 | 7.4:+52645465 | None:intergenic |
| TGAAGTTGAGAAATTGCAAA+AGG | 0.487851 | 7.4:-52646571 | MS.gene043714:CDS |
| ATATATCTAAAGACTCCAAA+TGG | 0.494837 | 7.4:-52646879 | MS.gene043714:CDS |
| AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7.4:-52645682 | MS.gene043714:CDS |
| TTAGCTGCAACTCTTTGGAA+TGG | 0.508092 | 7.4:+52646678 | None:intergenic |
| AAATATGGTTAGAAAAGGGT+TGG | 0.518334 | 7.4:-52646818 | MS.gene043714:CDS |
| TCTAAAGATATGAACAATGA+AGG | 0.545794 | 7.4:+52645618 | None:intergenic |
| GTGAAAGAAGAAGCTTCTCA+TGG | 0.547831 | 7.4:-52645461 | MS.gene043714:CDS |
| CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7.4:+52646276 | None:intergenic |
| TGATCTCACAACTGGATGGA+AGG | 0.549699 | 7.4:-52645713 | MS.gene043714:CDS |
| AGAAGCTTCTTCTTTCACTT+GGG | 0.559960 | 7.4:+52645466 | None:intergenic |
| TTTGTGGAGAAATATGGAGG+TGG | 0.574365 | 7.4:-52646915 | MS.gene043714:CDS |
| GAGCATCATTCTCTAGCTCA+TGG | 0.575529 | 7.4:-52646783 | MS.gene043714:CDS |
| TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7.4:-52645814 | MS.gene043714:CDS |
| CTTGCTCAACATCTTCATGA+AGG | 0.576527 | 7.4:-52647809 | MS.gene043714:CDS |
| CATGGCCAGTGAAACTCTTG+AGG | 0.599284 | 7.4:-52647861 | MS.gene043714:CDS |
| GTAGCAACTTTGCATCATGC+TGG | 0.604292 | 7.4:-52646549 | MS.gene043714:CDS |
| CCATTGTTTCCTATTTCACG+TGG | 0.608593 | 7.4:+52646600 | None:intergenic |
| TATCTAAAGACTCCAAATGG+TGG | 0.617671 | 7.4:-52646876 | MS.gene043714:CDS |
| CCACGTGAAATAGGAAACAA+TGG | 0.619683 | 7.4:-52646600 | MS.gene043714:CDS |
| TGGTTGATGGAATTCAAAAG+AGG | 0.624709 | 7.4:+52646620 | None:intergenic |
| TGGATGGAAGGCATTTGCAA+AGG | 0.644602 | 7.4:-52645701 | MS.gene043714:CDS |
| AAGTTTGTGGAGAAATATGG+AGG | 0.658447 | 7.4:-52646918 | MS.gene043714:CDS |
| TGTCATGCGTGCATCATACG+TGG | 0.676375 | 7.4:-52646262 | MS.gene043714:CDS |
| TGCACGCATGACAACAACAA+AGG | 0.693553 | 7.4:+52646272 | None:intergenic |
| CCAGTTGTGAGATCAAAATG+TGG | 0.701103 | 7.4:+52645721 | None:intergenic |
| CATGCTGGCAGAGAGTCCAA+AGG | 0.714363 | 7.4:-52646534 | MS.gene043714:intron |
| TGTCTATTACCAAACATACG+TGG | 0.737084 | 7.4:+52645838 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATCACATAAATGTTTAT+TGG | - | chr7.4:52647316-52647335 | MS.gene043714:intron | 15.0% |
| !! | TAAGAAAAAAAAGTTCAAAT+TGG | + | chr7.4:52645911-52645930 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATGTCCTACA+TGG | - | chr7.4:52645877-52645896 | MS.gene043714:intron | 20.0% |
| !! | AAAAATTAGAAAGTTCTTCT+TGG | + | chr7.4:52647418-52647437 | None:intergenic | 20.0% |
| !! | AAGTAATGTAATCATGTTAT+AGG | + | chr7.4:52645626-52645645 | None:intergenic | 20.0% |
| !! | TATTCTGATAAATGTGATTT+AGG | - | chr7.4:52646296-52646315 | MS.gene043714:CDS | 20.0% |
| !! | TGGAAAATGGAAATTAAATT+TGG | - | chr7.4:52646461-52646480 | MS.gene043714:intron | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+AGG | - | chr7.4:52646474-52646493 | MS.gene043714:intron | 20.0% |
| !!! | AATTACTTAGTTTTCTAATC+AGG | + | chr7.4:52646276-52646295 | None:intergenic | 20.0% |
| !!! | ACAAATTTTTTTCCTCAATA+GGG | - | chr7.4:52646103-52646122 | MS.gene043714:intron | 20.0% |
| !!! | ATGTAAATGCTATTTAACAA+GGG | - | chr7.4:52646025-52646044 | MS.gene043714:intron | 20.0% |
| !!! | ATTATCTTGAAAAAGTTGAT+TGG | + | chr7.4:52645487-52645506 | None:intergenic | 20.0% |
| !!! | GTTTATTTGTTGTTAAATGA+AGG | - | chr7.4:52647530-52647549 | MS.gene043714:intron | 20.0% |
| !!! | TGTAAATAAAAATTCGAGTT+TGG | - | chr7.4:52646130-52646149 | MS.gene043714:intron | 20.0% |
| ! | AATAAGAGAATCTAAGTCAA+AGG | + | chr7.4:52645546-52645565 | None:intergenic | 25.0% |
| ! | ACAAATATGTCGAAATTGTT+AGG | - | chr7.4:52645768-52645787 | MS.gene043714:CDS | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.4:52646438-52646457 | MS.gene043714:intron | 25.0% |
| ! | GAATGGATAATTTATCTCTA+AGG | + | chr7.4:52646625-52646644 | None:intergenic | 25.0% |
| ! | GTAATTAAGAAAAATGCACA+TGG | - | chr7.4:52646052-52646071 | MS.gene043714:intron | 25.0% |
| ! | TAAAAAGTGAAGGCAAAATA+TGG | - | chr7.4:52646484-52646503 | MS.gene043714:intron | 25.0% |
| ! | TATATTTGAAAAGCAGAAGA+TGG | + | chr7.4:52646560-52646579 | None:intergenic | 25.0% |
| ! | TCTAAAGATATGAACAATGA+AGG | + | chr7.4:52647702-52647721 | None:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | chr7.4:52646952-52646971 | None:intergenic | 25.0% |
| ! | TGTTGTTAAATGAAGGAATT+TGG | - | chr7.4:52647537-52647556 | MS.gene043714:intron | 25.0% |
| !! | CATTTGTCTTTTCTTTTGAT+TGG | - | chr7.4:52647447-52647466 | MS.gene043714:intron | 25.0% |
| !! | GATGTAAATGCTATTTAACA+AGG | - | chr7.4:52646024-52646043 | MS.gene043714:intron | 25.0% |
| !! | TATTGTGTTCAAATTTTGCA+GGG | - | chr7.4:52646952-52646971 | MS.gene043714:intron | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | chr7.4:52646951-52646970 | MS.gene043714:intron | 25.0% |
| !!! | CAAATTTTTTTCCTCAATAG+GGG | - | chr7.4:52646104-52646123 | MS.gene043714:intron | 25.0% |
| !!! | GACAAATTTTTTTCCTCAAT+AGG | - | chr7.4:52646102-52646121 | MS.gene043714:intron | 25.0% |
| AAACCAGCAAGTAATTAACT+TGG | - | chr7.4:52645949-52645968 | MS.gene043714:intron | 30.0% | |
| AAATATGGTTAGAAAAGGGT+TGG | - | chr7.4:52646499-52646518 | MS.gene043714:intron | 30.0% | |
| AAGGACAATAACTTGAAAGT+TGG | - | chr7.4:52647635-52647654 | MS.gene043714:intron | 30.0% | |
| AGAAAAATGCACATGGTAAA+TGG | - | chr7.4:52646059-52646078 | MS.gene043714:intron | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | - | chr7.4:52646396-52646415 | MS.gene043714:intron | 30.0% | |
| AGGCAAAATATGGTTAGAAA+AGG | - | chr7.4:52646494-52646513 | MS.gene043714:intron | 30.0% | |
| ATCAAAATGTGGTCCTTTAA+GGG | + | chr7.4:52647588-52647607 | None:intergenic | 30.0% | |
| ATTGTTCAACTTCTCAAAGT+AGG | - | chr7.4:52647744-52647763 | MS.gene043714:intron | 30.0% | |
| CAAGTCCATCATAAAATTAG+TGG | + | chr7.4:52646157-52646176 | None:intergenic | 30.0% | |
| GGCAAAATATGGTTAGAAAA+GGG | - | chr7.4:52646495-52646514 | MS.gene043714:intron | 30.0% | |
| GGCATATGAGCTTATATTTA+GGG | - | chr7.4:52646080-52646099 | MS.gene043714:intron | 30.0% | |
| GTGATTCATGCATACTAATT+TGG | - | chr7.4:52646348-52646367 | MS.gene043714:intron | 30.0% | |
| TAGCATGTATCATGACATAT+TGG | - | chr7.4:52645978-52645997 | MS.gene043714:intron | 30.0% | |
| TATCCAAGTTAATTACTTGC+TGG | + | chr7.4:52645955-52645974 | None:intergenic | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | + | chr7.4:52646396-52646415 | None:intergenic | 30.0% | |
| TCATAAGGCTAGAAATTTAG+TGG | + | chr7.4:52646181-52646200 | None:intergenic | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | chr7.4:52646746-52646765 | MS.gene043714:CDS | 30.0% | |
| TGCAACTTACCATAAGAAAT+TGG | + | chr7.4:52647085-52647104 | None:intergenic | 30.0% | |
| TGGCATATGAGCTTATATTT+AGG | - | chr7.4:52646079-52646098 | MS.gene043714:intron | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | chr7.4:52647490-52647509 | MS.gene043714:intron | 30.0% | |
| TTGAGTTAGATTCTTTGTTC+AGG | - | chr7.4:52645579-52645598 | MS.gene043714:CDS | 30.0% | |
| ! | AAGTTAATTACTTGCTGGTT+TGG | + | chr7.4:52645950-52645969 | None:intergenic | 30.0% |
| ! | AATTTCCATTTTCCACCATT+TGG | + | chr7.4:52646456-52646475 | None:intergenic | 30.0% |
| ! | ATTTGTTCGTCATAGTTTGT+GGG | - | chr7.4:52645681-52645700 | MS.gene043714:CDS | 30.0% |
| ! | TTGGTCCACTAATTTTATGA+TGG | - | chr7.4:52646149-52646168 | MS.gene043714:intron | 30.0% |
| !! | TTCTAGCCTTATGAAACTAT+CGG | - | chr7.4:52646187-52646206 | MS.gene043714:intron | 30.0% |
| !! | TTTGATTTGGATAAGAAGAG+AGG | - | chr7.4:52647503-52647522 | MS.gene043714:intron | 30.0% |
| AAAGAATTTCCCAGCTCAAA+TGG | - | chr7.4:52647266-52647285 | MS.gene043714:intron | 35.0% | |
| AAGAACCAATTGGTATCAAC+GGG | + | chr7.4:52647240-52647259 | None:intergenic | 35.0% | |
| AAGTTTGTGGAGAAATATGG+AGG | - | chr7.4:52646399-52646418 | MS.gene043714:intron | 35.0% | |
| ACATATTTGTCAGTTGAGCT+AGG | + | chr7.4:52645758-52645777 | None:intergenic | 35.0% | |
| AGAAGCTTCTTCTTTCACTT+GGG | + | chr7.4:52647854-52647873 | None:intergenic | 35.0% | |
| CAAGAACCAATTGGTATCAA+CGG | + | chr7.4:52647241-52647260 | None:intergenic | 35.0% | |
| CAGAATATACCACGTATGTT+TGG | - | chr7.4:52647470-52647489 | MS.gene043714:intron | 35.0% | |
| CGTGGAATACCAATTTCTTA+TGG | - | chr7.4:52647073-52647092 | MS.gene043714:intron | 35.0% | |
| CTTGGACAATTAAGTTAGGT+CGG | - | chr7.4:52646246-52646265 | MS.gene043714:CDS | 35.0% | |
| CTTTCTCAACAAGAACCAAT+TGG | + | chr7.4:52647250-52647269 | None:intergenic | 35.0% | |
| GACACAAAATCTGATACCTT+TGG | + | chr7.4:52646802-52646821 | None:intergenic | 35.0% | |
| GATCAAAATGTGGTCCTTTA+AGG | + | chr7.4:52647589-52647608 | None:intergenic | 35.0% | |
| GGTAAGTTGCAAAGAAAGTT+TGG | - | chr7.4:52647094-52647113 | MS.gene043714:intron | 35.0% | |
| TATCTAAAGACTCCAAATGG+TGG | - | chr7.4:52646441-52646460 | MS.gene043714:intron | 35.0% | |
| TATTTACAAGTCCCCTATTG+AGG | + | chr7.4:52646118-52646137 | None:intergenic | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | - | chr7.4:52647232-52647251 | MS.gene043714:intron | 35.0% | |
| TGAAACCTGCTACAATAGTT+CGG | + | chr7.4:52646890-52646909 | None:intergenic | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | + | chr7.4:52647482-52647501 | None:intergenic | 35.0% | |
| TTGGACAATTAAGTTAGGTC+GGG | - | chr7.4:52646247-52646266 | MS.gene043714:CDS | 35.0% | |
| ! | AGCTTTTCTCTTTTGACCAT+TGG | + | chr7.4:52646673-52646692 | None:intergenic | 35.0% |
| ! | GATTTGTTCGTCATAGTTTG+TGG | - | chr7.4:52645680-52645699 | MS.gene043714:CDS | 35.0% |
| !! | ATTTTGATCTCACAACTGGA+TGG | - | chr7.4:52647600-52647619 | MS.gene043714:intron | 35.0% |
| !! | TGGTTGATGGAATTCAAAAG+AGG | + | chr7.4:52646700-52646719 | None:intergenic | 35.0% |
| !! | TTGGCTTGGACAATTAAGTT+AGG | - | chr7.4:52646242-52646261 | MS.gene043714:intron | 35.0% |
| AATTTCCCAGCTCAAATGGA+GGG | - | chr7.4:52647270-52647289 | MS.gene043714:intron | 40.0% | |
| ACTTAATTGTCCAAGCCAAG+TGG | + | chr7.4:52646241-52646260 | None:intergenic | 40.0% | |
| ATTGGACTACCCAAATGGAA+GGG | - | chr7.4:52645996-52646015 | MS.gene043714:intron | 40.0% | |
| CATAAACTCACACACACAAG+TGG | + | chr7.4:52645830-52645849 | None:intergenic | 40.0% | |
| CCAAAGAGTTGCAGCTAAAA+AGG | - | chr7.4:52646644-52646663 | MS.gene043714:CDS | 40.0% | |
| CCACGTGAAATAGGAAACAA+TGG | - | chr7.4:52646717-52646736 | MS.gene043714:CDS | 40.0% | |
| CCAGTTGTGAGATCAAAATG+TGG | + | chr7.4:52647599-52647618 | None:intergenic | 40.0% | |
| CCATTGTTTCCTATTTCACG+TGG | + | chr7.4:52646720-52646739 | None:intergenic | 40.0% | |
| CTTAATTGTCCAAGCCAAGT+GGG | + | chr7.4:52646240-52646259 | None:intergenic | 40.0% | |
| CTTGCTCAACATCTTCATGA+AGG | - | chr7.4:52645508-52645527 | MS.gene043714:intron | 40.0% | |
| GACATATTGGACTACCCAAA+TGG | - | chr7.4:52645991-52646010 | MS.gene043714:intron | 40.0% | |
| GAGAAGCTTCTTCTTTCACT+TGG | + | chr7.4:52647855-52647874 | None:intergenic | 40.0% | |
| GATGATGCCAAGAAAGTTTG+TGG | - | chr7.4:52646386-52646405 | MS.gene043714:intron | 40.0% | |
| GTAGCGACATAGATGAGTAA+AGG | + | chr7.4:52645722-52645741 | None:intergenic | 40.0% | |
| GTGAAAGAAGAAGCTTCTCA+TGG | - | chr7.4:52647856-52647875 | MS.gene043714:CDS | 40.0% | |
| TATTGGACTACCCAAATGGA+AGG | - | chr7.4:52645995-52646014 | MS.gene043714:intron | 40.0% | |
| TGCAGCCTGTTTACTCAATT+CGG | - | chr7.4:52646214-52646233 | MS.gene043714:intron | 40.0% | |
| TTCCATCAACCACGTGAAAT+AGG | - | chr7.4:52646708-52646727 | MS.gene043714:CDS | 40.0% | |
| TTCCTATTTCACGTGGTTGA+TGG | + | chr7.4:52646713-52646732 | None:intergenic | 40.0% | |
| TTCTTTCCATGATGTGTCGA+TGG | - | chr7.4:52646846-52646865 | MS.gene043714:CDS | 40.0% | |
| TTTGTGGAGAAATATGGAGG+TGG | - | chr7.4:52646402-52646421 | MS.gene043714:intron | 40.0% | |
| ! | AGACTCCAAATGGTGGAAAA+TGG | - | chr7.4:52646448-52646467 | MS.gene043714:intron | 40.0% |
| ! | CTTTAAGGGTCATCCTGATT+CGG | + | chr7.4:52647574-52647593 | None:intergenic | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+TGG | + | chr7.4:52646642-52646661 | None:intergenic | 40.0% |
| !! | CCACATTTTGATCTCACAAC+TGG | - | chr7.4:52647596-52647615 | MS.gene043714:intron | 40.0% |
| !!! | CCTTTTTAGCTGCAACTCTT+TGG | + | chr7.4:52646647-52646666 | None:intergenic | 40.0% |
| AAACTCACACACACAAGTGG+AGG | + | chr7.4:52645827-52645846 | None:intergenic | 45.0% | |
| AATTGGCGATGAAGCCATGT+AGG | + | chr7.4:52645894-52645913 | None:intergenic | 45.0% | |
| ACATCAATCGCCCTTCCATT+TGG | + | chr7.4:52646009-52646028 | None:intergenic | 45.0% | |
| ACCTGCTACAATAGTTCGGA+AGG | + | chr7.4:52646886-52646905 | None:intergenic | 45.0% | |
| CACCAGCCGATAGTTTCATA+AGG | + | chr7.4:52646196-52646215 | None:intergenic | 45.0% | |
| CATCAATCGCCCTTCCATTT+GGG | + | chr7.4:52646008-52646027 | None:intergenic | 45.0% | |
| CCTGCTACAATAGTTCGGAA+GGG | + | chr7.4:52646885-52646904 | None:intergenic | 45.0% | |
| CGAATCAGGATGACCCTTAA+AGG | - | chr7.4:52647572-52647591 | MS.gene043714:intron | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | chr7.4:52647044-52647063 | None:intergenic | 45.0% | |
| CTTCACCTCAAGAGTTTCAC+TGG | + | chr7.4:52645464-52645483 | None:intergenic | 45.0% | |
| CTTCATCCATCGACACATCA+TGG | + | chr7.4:52646855-52646874 | None:intergenic | 45.0% | |
| GAATTTCCCAGCTCAAATGG+AGG | - | chr7.4:52647269-52647288 | MS.gene043714:intron | 45.0% | |
| GCAGCTAAAAAGGTCTCCAA+TGG | - | chr7.4:52646654-52646673 | MS.gene043714:CDS | 45.0% | |
| GTAGCAACTTTGCATCATGC+TGG | - | chr7.4:52646768-52646787 | MS.gene043714:CDS | 45.0% | |
| GTCAGTTGAGCTAGGACTTA+TGG | + | chr7.4:52645750-52645769 | None:intergenic | 45.0% | |
| GTTAGGTCAGACGTCATGAT+CGG | - | chr7.4:52645785-52645804 | MS.gene043714:CDS | 45.0% | |
| TAAGACCCTCCATTTGAGCT+GGG | + | chr7.4:52647278-52647297 | None:intergenic | 45.0% | |
| TGATCTCACAACTGGATGGA+AGG | - | chr7.4:52647604-52647623 | MS.gene043714:intron | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | chr7.4:52647048-52647067 | None:intergenic | 45.0% | |
| TTAAGACCCTCCATTTGAGC+TGG | + | chr7.4:52647279-52647298 | None:intergenic | 45.0% | |
| TTAGGTCAGACGTCATGATC+GGG | - | chr7.4:52645786-52645805 | MS.gene043714:CDS | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | chr7.4:52646223-52646242 | MS.gene043714:intron | 45.0% | |
| ! | AACTACGTATGCACTGACGA+AGG | - | chr7.4:52647124-52647143 | MS.gene043714:intron | 45.0% |
| ! | AGCCTTATGAAACTATCGGC+TGG | - | chr7.4:52646191-52646210 | MS.gene043714:intron | 45.0% |
| ! | GAGCATCATTCTCTAGCTCA+TGG | - | chr7.4:52646534-52646553 | MS.gene043714:intron | 45.0% |
| !! | ATCCTGATTCGGTACTTTGC+AGG | + | chr7.4:52647563-52647582 | None:intergenic | 45.0% |
| !! | TGGATGGAAGGCATTTGCAA+AGG | - | chr7.4:52647616-52647635 | MS.gene043714:intron | 45.0% |
| CCCTTCCGAACTATTGTAGC+AGG | - | chr7.4:52646882-52646901 | MS.gene043714:CDS | 50.0% | |
| GTGGGCCGAATTGAGTAAAC+AGG | + | chr7.4:52646222-52646241 | None:intergenic | 50.0% | |
| TAGGTCAGACGTCATGATCG+GGG | - | chr7.4:52645787-52645806 | MS.gene043714:CDS | 50.0% | |
| TGTCATGCGTGCATCATACG+TGG | - | chr7.4:52647055-52647074 | MS.gene043714:intron | 50.0% | |
| CATGATCGGGGTTCGAACCT+CGG | - | chr7.4:52645799-52645818 | MS.gene043714:CDS | 55.0% | |
| CATGCTGGCAGAGAGTCCAA+AGG | - | chr7.4:52646783-52646802 | MS.gene043714:CDS | 55.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | - | chr7.4:52646228-52646247 | MS.gene043714:intron | 55.0% | |
| !! | GGCCTGCAAAGTACCGAATC+AGG | - | chr7.4:52647558-52647577 | MS.gene043714:intron | 55.0% |
| !! | ACACACAAGTGGAGGTGCCG+AGG | + | chr7.4:52645819-52645838 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52645457 | 52647882 | 52645457 | ID=MS.gene043714 |
| chr7.4 | mRNA | 52645457 | 52647882 | 52645457 | ID=MS.gene043714.t1;Parent=MS.gene043714 |
| chr7.4 | exon | 52647802 | 52647882 | 52647802 | ID=MS.gene043714.t1.exon1;Parent=MS.gene043714.t1 |
| chr7.4 | CDS | 52647802 | 52647882 | 52647802 | ID=cds.MS.gene043714.t1;Parent=MS.gene043714.t1 |
| chr7.4 | exon | 52646535 | 52646952 | 52646535 | ID=MS.gene043714.t1.exon2;Parent=MS.gene043714.t1 |
| chr7.4 | CDS | 52646535 | 52646952 | 52646535 | ID=cds.MS.gene043714.t1;Parent=MS.gene043714.t1 |
| chr7.4 | exon | 52646245 | 52646366 | 52646245 | ID=MS.gene043714.t1.exon3;Parent=MS.gene043714.t1 |
| chr7.4 | CDS | 52646245 | 52646366 | 52646245 | ID=cds.MS.gene043714.t1;Parent=MS.gene043714.t1 |
| chr7.4 | exon | 52645578 | 52645866 | 52645578 | ID=MS.gene043714.t1.exon4;Parent=MS.gene043714.t1 |
| chr7.4 | CDS | 52645578 | 52645866 | 52645578 | ID=cds.MS.gene043714.t1;Parent=MS.gene043714.t1 |
| chr7.4 | exon | 52645457 | 52645494 | 52645457 | ID=MS.gene043714.t1.exon5;Parent=MS.gene043714.t1 |
| chr7.4 | CDS | 52645457 | 52645494 | 52645457 | ID=cds.MS.gene043714.t1;Parent=MS.gene043714.t1 |
| Gene Sequence |
| Protein sequence |
