AlfalfaGEDB | MS.gene043716

M. sativa cultivar XinJiangDaYe / MS.gene043716

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043716.t1	RHN45637.1	81.3	166	30	1	16	181	116	280	2.60E-72	281.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043716.t1	Q9XIB5	30.7	127	82	2	38	164	101	221	7.9e-09	62.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043716.t1	A0A396H3W8	81.3	166	30	1	16	181	116	280	1.9e-72	281.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene043716.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043716.t1	MTR_7g050560	81.481	162	29	1	16	177	143	303	1.05e-96	283
MS.gene043716.t1	MTR_7g050590	73.214	168	42	3	16	181	131	297	2.16e-84	251
MS.gene043716.t1	MTR_3g098790	65.868	167	55	2	16	181	151	316	6.87e-73	223
MS.gene043716.t1	MTR_7g050580	68.485	165	42	2	14	177	148	303	2.37e-72	221
MS.gene043716.t1	MTR_7g050710	63.314	169	58	3	16	181	157	324	4.63e-65	202
MS.gene043716.t1	MTR_7g050720	52.174	161	67	6	16	166	157	317	2.60e-46	154
MS.gene043716.t1	MTR_1g035460	42.342	111	52	4	55	164	188	287	3.44e-18	81.3
MS.gene043716.t1	MTR_1g108780	31.944	144	83	4	21	164	162	290	7.07e-17	77.8
MS.gene043716.t1	MTR_8g103940	36.134	119	66	2	46	164	223	331	6.78e-14	69.3
MS.gene043716.t1	MTR_5g044670	33.333	120	75	2	52	171	196	310	1.99e-12	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043716.t1	AT1G49480	30.645	124	80	2	41	164	104	221	4.21e-12	62.8
MS.gene043716.t1	AT1G49480	30.645	124	80	2	41	164	104	221	4.21e-12	62.8
MS.gene043716.t1	AT1G49480	30.645	124	80	2	41	164	104	221	4.21e-12	62.8

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Find 28 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGATCTCACAGTTGGA+TGG	0.578678	7.4:-52708147	MS.gene043716:CDS
ACTTTGAGATGCTGAACAAT+TGG	0.487702	7.4:+52708006	None:intergenic
ATCAATTTGTGGTCCTGTAA+GGG	0.548089	7.4:+52708162	None:intergenic
ATTGTTCAGCATCTCAAAGT+AGG	0.493760	7.4:-52708003	MS.gene043716:CDS
ATTTATTTGTTGTTAAATGA+AGG	0.421453	7.4:-52708217	MS.gene043716:CDS
CAGAATATACCACGTTCGTT+TGG	0.431161	7.4:-52708277	MS.gene043716:CDS
CATATCTGAAAAGCAGAAGA+TGG	0.486489	7.4:+52709100	None:intergenic
CATGCTGGCAGAGAGTCCAG+AGG	0.757168	7.4:-52708901	MS.gene043716:intron
CATTGTTCACATCTTTAGAG+AGG	0.596070	7.4:-52708044	MS.gene043716:CDS
CCAACTGTGAGATCAATTTG+TGG	0.524959	7.4:+52708151	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGGGTGAGAAATATATAT+TGG	-	chr7.4:52708590-52708609	MS.gene043716:intron	30.0%
GGAAGGATAATTTATCTCTA+AGG	+	chr7.4:52708066-52708085	None:intergenic	30.0%
GTAAGTTGCAAAGAAACATT+TGG	-	chr7.4:52708498-52708517	MS.gene043716:intron	30.0%
TCTAAAGATGTGAACAATGA+AGG	+	chr7.4:52709053-52709072	None:intergenic	30.0%
TCTATGTGATGATATCTGAT+TGG	+	chr7.4:52708645-52708664	None:intergenic	30.0%
TGAAGTTGAGAAATTGCAAA+AGG	-	chr7.4:52708160-52708179	MS.gene043716:CDS	30.0%
TGGTAATAGACACTTTGATT+TGG	-	chr7.4:52708841-52708860	MS.gene043716:intron	30.0%
AAATTGATCTCACAGTTGGA+TGG	-	chr7.4:52708951-52708970	MS.gene043716:CDS	35.0%
ATATTTCTCACCCCTTAATC+TGG	+	chr7.4:52708586-52708605	None:intergenic	35.0%
ATCAATTTGTGGTCCTGTAA+GGG	+	chr7.4:52708939-52708958	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	52707994	52709126	52707994	ID=MS.gene043716
chr7.4	mRNA	52707994	52709126	52707994	ID=MS.gene043716.t1;Parent=MS.gene043716
chr7.4	exon	52709080	52709126	52709080	ID=MS.gene043716.t1.exon1;Parent=MS.gene043716.t1
chr7.4	CDS	52709080	52709126	52709080	ID=cds.MS.gene043716.t1;Parent=MS.gene043716.t1
chr7.4	exon	52708902	52708972	52708902	ID=MS.gene043716.t1.exon2;Parent=MS.gene043716.t1
chr7.4	CDS	52708902	52708972	52708902	ID=cds.MS.gene043716.t1;Parent=MS.gene043716.t1
chr7.4	exon	52708623	52708747	52708623	ID=MS.gene043716.t1.exon3;Parent=MS.gene043716.t1
chr7.4	CDS	52708623	52708747	52708623	ID=cds.MS.gene043716.t1;Parent=MS.gene043716.t1
chr7.4	exon	52707994	52708296	52707994	ID=MS.gene043716.t1.exon4;Parent=MS.gene043716.t1
chr7.4	CDS	52707994	52708296	52707994	ID=cds.MS.gene043716.t1;Parent=MS.gene043716.t1

Gene Sequence

>MS.gene043716

ATGGCCATCTTCTGCTTTTCAGATATGAAAAAACTTCTCTTTTTGAGGTACATATCTTTGATAAGAGTGCCTTAGAGATAAATTATCCTTCCAGTGGTCAAAAGATAAAAGCTAACTCCTCTTTTGAATTCCATCAACCATGTGAAATTGGAAGCAATAGTTGTGTTGAAGTTGAGAAATTGCAAAAGGTAGCAACTTTAAATCATGCTGGCAGAGAGTCCAGAGGTATACAATTTTGTGTCTTCATTGTCTCATAAAAGTTTCACAAGTTAATATAAATTATTAGCTTTTGTTAACATAAATCTTTAGCAGGTTTCAATATATAGAAACATGAAAGATGATCATGAAATATCAGCCTTATTGTGTTCAAATTTTGCAGGAAAACAAGTGATTCCTACTGCTGAGAAAATTACAACTGTTGAAAGAGCACAATCTTTCAAAACAAGTAATCCATCCTTTGTTGTTGCCATGCGTGCATCATACGTTGAACACCGTTTTCGTCTGGTAAGTTGCAAAGAAACATTTGGCTTTTAGAACATAAGTTGATAGTCAACAACATCAATATAACCAATTATTTCTCTAGTCTTTACCAGATTAAGGGGTGAGAAATATATATTGGAATATCAAATGGAGGGTCCTAACAATTATCCAATCAGATATCATCACATAGATGTTTAATTATTGGAATATTAGTAGATATATTATAATATAACAAAGTGATATTATGATTAGATTAGATTACCATGTAAGAAAATACACACTGTTAAGTAGTCCAACAAAAACTTTCTAATTTTTATTCATTAACATTTGTCGTTTCTTTTGATTGGCAGAATATACCACGTTCGTTTGGTAATAGACACTTTGATTTGGATAAGAAGAGAGGAGATATTTATTTGTTGTTAAATGAAGGAATTTGGCCTGCAAAATATCTAATCAGGATGACCCTTACAGGACCACAAATTGATCTCACAGTTGGATGGAAGGTATTTGCAGAGGACAATAACTTGAAAGTTGGCGATGTTTGCAAATTTGAGCTCATCTCTAGCACTTTACTTACCTTCATTGTTCACATCTTTAGAGAGGCAGACAATGACAACACCAATTGTTCAGCATCTCAAAGTAGGATTAATTGA

Protein sequence

>MS.gene043716.t1

MAIFCFSDMKKLLFLSNSCVEVEKLQKVATLNHAGRESRGKQVIPTAEKITTVERAQSFKTSNPSFVVAMRASYVEHRFRLNIPRSFGNRHFDLDKKRGDIYLLLNEGIWPAKYLIRMTLTGPQIDLTVGWKVFAEDNNLKVGDVCKFELISSTLLTFIVHIFREADNDNTNCSASQSRIN