Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043717.t1 | XP_003622663.1 | 89.6 | 288 | 24 | 1 | 1 | 282 | 28 | 315 | 3.10E-144 | 521.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043717.t1 | Q8L3W1 | 28.8 | 323 | 155 | 5 | 2 | 257 | 22 | 336 | 1.3e-26 | 121.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043717.t1 | G7KVV4 | 89.6 | 288 | 24 | 1 | 1 | 282 | 28 | 315 | 2.2e-144 | 521.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene043717.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043717.t1 | MTR_7g050560 | 89.583 | 288 | 24 | 1 | 1 | 282 | 28 | 315 | 0.0 | 530 |
MS.gene043717.t1 | MTR_7g050590 | 76.109 | 293 | 47 | 3 | 1 | 270 | 1 | 293 | 4.40e-160 | 447 |
MS.gene043717.t1 | MTR_7g050580 | 66.997 | 303 | 64 | 5 | 1 | 282 | 28 | 315 | 2.22e-136 | 388 |
MS.gene043717.t1 | MTR_3g098790 | 66.438 | 292 | 69 | 5 | 1 | 270 | 28 | 312 | 3.55e-130 | 372 |
MS.gene043717.t1 | MTR_7g050710 | 65.870 | 293 | 75 | 5 | 2 | 270 | 29 | 320 | 4.20e-130 | 372 |
MS.gene043717.t1 | MTR_7g050720 | 61.775 | 293 | 78 | 7 | 1 | 259 | 25 | 317 | 3.70e-117 | 339 |
MS.gene043717.t1 | MTR_1g108780 | 35.069 | 288 | 145 | 7 | 2 | 257 | 13 | 290 | 2.09e-50 | 172 |
MS.gene043717.t1 | MTR_8g103940 | 36.934 | 287 | 140 | 6 | 2 | 257 | 55 | 331 | 1.92e-48 | 168 |
MS.gene043717.t1 | MTR_1g035460 | 34.899 | 298 | 142 | 7 | 1 | 257 | 1 | 287 | 1.98e-48 | 166 |
MS.gene043717.t1 | MTR_5g044670 | 33.000 | 300 | 167 | 9 | 1 | 276 | 31 | 320 | 3.56e-39 | 140 |
MS.gene043717.t1 | MTR_7g050640 | 72.093 | 86 | 24 | 0 | 1 | 86 | 28 | 113 | 1.89e-37 | 129 |
MS.gene043717.t1 | MTR_3g061370 | 34.058 | 276 | 144 | 9 | 2 | 256 | 23 | 281 | 5.59e-37 | 132 |
MS.gene043717.t1 | MTR_3g061350 | 32.364 | 275 | 150 | 8 | 2 | 256 | 26 | 284 | 3.62e-36 | 130 |
MS.gene043717.t1 | MTR_3g061320 | 32.734 | 278 | 140 | 9 | 2 | 256 | 26 | 279 | 4.20e-36 | 130 |
MS.gene043717.t1 | MTR_3g061340 | 31.579 | 266 | 154 | 8 | 2 | 256 | 26 | 274 | 1.37e-32 | 121 |
MS.gene043717.t1 | MTR_1g035640 | 32.482 | 274 | 165 | 8 | 2 | 263 | 21 | 286 | 1.33e-30 | 119 |
MS.gene043717.t1 | MTR_1g035620 | 30.515 | 272 | 152 | 9 | 2 | 255 | 25 | 277 | 2.48e-29 | 115 |
MS.gene043717.t1 | MTR_3g061310 | 29.851 | 268 | 167 | 7 | 2 | 256 | 26 | 285 | 3.48e-29 | 112 |
MS.gene043717.t1 | MTR_5g070440 | 27.341 | 267 | 154 | 7 | 2 | 260 | 37 | 271 | 8.64e-28 | 108 |
MS.gene043717.t1 | MTR_1g050845 | 30.597 | 268 | 145 | 6 | 2 | 255 | 25 | 265 | 2.15e-27 | 111 |
MS.gene043717.t1 | MTR_1g035570 | 30.403 | 273 | 167 | 6 | 2 | 257 | 21 | 287 | 6.37e-27 | 108 |
MS.gene043717.t1 | MTR_3g005480 | 26.866 | 268 | 146 | 7 | 2 | 260 | 37 | 263 | 1.20e-26 | 105 |
MS.gene043717.t1 | MTR_3g061330 | 30.531 | 226 | 126 | 6 | 1 | 208 | 25 | 237 | 1.02e-25 | 102 |
MS.gene043717.t1 | MTR_3g005490 | 26.493 | 268 | 146 | 6 | 2 | 260 | 37 | 262 | 1.80e-25 | 102 |
MS.gene043717.t1 | MTR_6g061070 | 29.293 | 297 | 161 | 10 | 1 | 256 | 33 | 321 | 1.33e-24 | 102 |
MS.gene043717.t1 | MTR_6g043890 | 29.588 | 267 | 157 | 8 | 2 | 243 | 31 | 291 | 4.96e-24 | 99.8 |
MS.gene043717.t1 | MTR_3g061290 | 50.602 | 83 | 41 | 0 | 2 | 84 | 26 | 108 | 6.31e-23 | 94.0 |
MS.gene043717.t1 | MTR_3g005460 | 26.493 | 268 | 163 | 8 | 2 | 260 | 278 | 520 | 6.33e-22 | 95.5 |
MS.gene043717.t1 | MTR_3g005460 | 23.846 | 260 | 133 | 6 | 2 | 252 | 41 | 244 | 2.18e-16 | 79.3 |
MS.gene043717.t1 | MTR_3g005420 | 27.692 | 260 | 162 | 5 | 2 | 260 | 305 | 539 | 1.55e-21 | 94.4 |
MS.gene043717.t1 | MTR_3g005420 | 23.265 | 245 | 139 | 7 | 2 | 244 | 56 | 253 | 6.25e-12 | 65.9 |
MS.gene043717.t1 | MTR_4g119990 | 27.273 | 286 | 172 | 7 | 2 | 256 | 31 | 311 | 7.72e-21 | 91.3 |
MS.gene043717.t1 | MTR_1g021360 | 28.897 | 263 | 164 | 8 | 2 | 244 | 198 | 457 | 9.05e-21 | 92.0 |
MS.gene043717.t1 | MTR_1g034240 | 37.500 | 104 | 62 | 1 | 2 | 105 | 23 | 123 | 7.94e-19 | 86.3 |
MS.gene043717.t1 | MTR_1g034240 | 30.667 | 150 | 93 | 4 | 132 | 276 | 272 | 415 | 6.88e-13 | 68.6 |
MS.gene043717.t1 | MTR_4g068320 | 43.820 | 89 | 48 | 1 | 2 | 88 | 22 | 110 | 1.27e-18 | 85.5 |
MS.gene043717.t1 | MTR_4g068320 | 29.944 | 177 | 106 | 5 | 87 | 262 | 234 | 393 | 7.57e-14 | 71.6 |
MS.gene043717.t1 | MTR_1g035480 | 34.545 | 165 | 93 | 6 | 1 | 164 | 32 | 182 | 3.35e-17 | 77.8 |
MS.gene043717.t1 | MTR_3g005495 | 37.209 | 86 | 54 | 0 | 2 | 87 | 29 | 114 | 1.37e-16 | 79.7 |
MS.gene043717.t1 | MTR_3g005495 | 30.612 | 245 | 126 | 9 | 2 | 244 | 259 | 461 | 2.12e-16 | 79.3 |
MS.gene043717.t1 | MTR_1g035510 | 37.903 | 124 | 67 | 4 | 1 | 124 | 1 | 114 | 2.59e-16 | 76.3 |
MS.gene043717.t1 | MTR_3g005440 | 36.047 | 86 | 55 | 0 | 2 | 87 | 36 | 121 | 4.76e-16 | 78.2 |
MS.gene043717.t1 | MTR_3g005440 | 27.429 | 175 | 110 | 3 | 5 | 178 | 261 | 419 | 1.63e-11 | 64.7 |
MS.gene043717.t1 | MTR_1g035520 | 26.885 | 305 | 164 | 9 | 1 | 255 | 87 | 382 | 7.83e-16 | 77.0 |
MS.gene043717.t1 | MTR_3g061220 | 40.964 | 83 | 36 | 1 | 2 | 84 | 26 | 95 | 2.38e-15 | 71.2 |
MS.gene043717.t1 | MTR_1g035500 | 37.500 | 128 | 72 | 4 | 1 | 128 | 40 | 159 | 7.23e-15 | 71.6 |
MS.gene043717.t1 | MTR_1g034210 | 39.759 | 83 | 48 | 1 | 2 | 84 | 23 | 103 | 2.55e-14 | 72.4 |
MS.gene043717.t1 | MTR_1g035470 | 37.903 | 124 | 68 | 5 | 1 | 124 | 1 | 115 | 3.06e-14 | 68.9 |
MS.gene043717.t1 | MTR_1g034210 | 39.759 | 83 | 48 | 1 | 2 | 84 | 23 | 103 | 3.07e-14 | 72.4 |
MS.gene043717.t1 | MTR_1g035650 | 29.146 | 199 | 94 | 5 | 2 | 173 | 25 | 203 | 1.42e-13 | 68.6 |
MS.gene043717.t1 | MTR_1g033740 | 36.207 | 116 | 67 | 3 | 1 | 116 | 37 | 145 | 1.79e-13 | 67.8 |
MS.gene043717.t1 | MTR_3g005420 | 23.265 | 245 | 139 | 7 | 2 | 244 | 37 | 234 | 6.90e-12 | 65.9 |
MS.gene043717.t1 | MTR_1g021440 | 29.054 | 148 | 91 | 4 | 2 | 146 | 38 | 174 | 1.17e-11 | 64.3 |
MS.gene043717.t1 | MTR_1g021380 | 28.667 | 150 | 88 | 1 | 2 | 151 | 37 | 167 | 1.22e-11 | 64.7 |
MS.gene043717.t1 | MTR_1g021440 | 29.054 | 148 | 91 | 4 | 2 | 146 | 38 | 174 | 1.74e-11 | 63.9 |
MS.gene043717.t1 | MTR_1g021440 | 29.054 | 148 | 91 | 4 | 2 | 146 | 38 | 174 | 1.85e-11 | 64.3 |
MS.gene043717.t1 | MTR_1g021440 | 29.054 | 148 | 91 | 4 | 2 | 146 | 38 | 174 | 2.44e-11 | 63.9 |
MS.gene043717.t1 | MTR_1g021320 | 26.404 | 178 | 100 | 4 | 2 | 150 | 198 | 373 | 6.44e-11 | 63.2 |
MS.gene043717.t1 | MTR_1g021320 | 32.353 | 136 | 83 | 4 | 120 | 249 | 462 | 594 | 6.80e-11 | 63.2 |
MS.gene043717.t1 | MTR_1g021270 | 28.652 | 178 | 110 | 6 | 95 | 266 | 191 | 357 | 7.47e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043717.t1 | AT3G18990 | 27.914 | 326 | 160 | 5 | 2 | 260 | 22 | 339 | 1.57e-31 | 120 |
MS.gene043717.t1 | AT3G18990 | 27.864 | 323 | 158 | 5 | 2 | 257 | 22 | 336 | 2.55e-31 | 119 |
MS.gene043717.t1 | AT4G01580 | 46.591 | 88 | 47 | 0 | 2 | 89 | 46 | 133 | 5.70e-20 | 85.5 |
MS.gene043717.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 2 | 89 | 46 | 133 | 9.10e-19 | 82.4 |
MS.gene043717.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 2 | 89 | 46 | 133 | 1.30e-18 | 82.4 |
MS.gene043717.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 2 | 89 | 9 | 96 | 1.70e-18 | 81.3 |
MS.gene043717.t1 | AT1G49475 | 44.186 | 86 | 47 | 1 | 2 | 87 | 50 | 134 | 2.95e-18 | 80.9 |
MS.gene043717.t1 | AT4G33280 | 25.676 | 296 | 183 | 10 | 1 | 265 | 38 | 327 | 5.95e-18 | 82.8 |
MS.gene043717.t1 | AT1G49480 | 30.065 | 153 | 99 | 3 | 105 | 257 | 77 | 221 | 1.10e-13 | 69.3 |
MS.gene043717.t1 | AT1G49480 | 30.065 | 153 | 99 | 3 | 105 | 257 | 77 | 221 | 1.10e-13 | 69.3 |
MS.gene043717.t1 | AT1G49480 | 30.065 | 153 | 99 | 3 | 105 | 257 | 77 | 221 | 1.10e-13 | 69.3 |
Find 44 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTGTTAAATGAAGGAATT+TGG | 0.170862 | 7.4:-52722129 | MS.gene043717:CDS |
GATCAAACTGTAGTCCTTTA+AGG | 0.189876 | 7.4:+52722080 | None:intergenic |
TGCAAAATGGAAATTAAATT+TGG | 0.194062 | 7.4:-52723535 | MS.gene043717:CDS |
TATTTCTCCACAAACTTTCT+TGG | 0.217927 | 7.4:+52723603 | None:intergenic |
TTCCATCAACCACGTGAAAT+TGG | 0.227140 | 7.4:-52723306 | MS.gene043717:CDS |
CTAATCAGGATGACCCTTAA+AGG | 0.288761 | 7.4:-52722094 | MS.gene043717:CDS |
AGAAAGTTTGTGGAGAAATA+TGG | 0.293086 | 7.4:-52723600 | MS.gene043717:CDS |
CGTGGAACACCGATTTCTTA+TGG | 0.302917 | 7.4:-52722823 | MS.gene043717:intron |
GAATGGATAATTTATCTCTA+AGG | 0.305393 | 7.4:+52723374 | None:intergenic |
AGACTCCAAATGGTGCAAAA+TGG | 0.337543 | 7.4:-52723548 | MS.gene043717:CDS |
CTTTAAGGGTCATCCTGATT+AGG | 0.346771 | 7.4:+52722095 | None:intergenic |
CAGAATATACCAGTTAAGTT+TGG | 0.352430 | 7.4:-52722196 | MS.gene043717:CDS |
TGAAGTTGAGAAATTGAATA+AGG | 0.355428 | 7.4:-52723268 | MS.gene043717:CDS |
ATCCTGATTAGGTACTTTGC+AGG | 0.384916 | 7.4:+52722106 | None:intergenic |
TGGTAAGACACACTTTGATT+TGG | 0.385393 | 7.4:-52722176 | MS.gene043717:CDS |
TTCCAATTTCACGTGGTTGA+TGG | 0.401701 | 7.4:+52723304 | None:intergenic |
TGTGTCTTACCAAACTTAAC+TGG | 0.416239 | 7.4:+52722187 | None:intergenic |
ATTTATTTGTTGTTAAATGA+AGG | 0.421453 | 7.4:-52722136 | MS.gene043717:CDS |
GGCCTGCAAAGTACCTAATC+AGG | 0.423211 | 7.4:-52722108 | MS.gene043717:CDS |
TGCAACTTACCATAAGAAAT+CGG | 0.439757 | 7.4:+52722814 | None:intergenic |
GATGATGCCAAGAAAGTTTG+TGG | 0.440968 | 7.4:-52723610 | MS.gene043717:CDS |
CTACAGTTTGATCTCACAAC+TGG | 0.442831 | 7.4:-52722070 | MS.gene043717:CDS |
ATCAAACTGTAGTCCTTTAA+GGG | 0.460291 | 7.4:+52722081 | None:intergenic |
GATATTTGAAAAGCAGAAGA+TGG | 0.469802 | 7.4:+52723439 | None:intergenic |
GAGAAGCTTCTTCTTTCACT+TGG | 0.486869 | 7.4:+52721814 | None:intergenic |
ATATATCTAAAGACTCCAAA+TGG | 0.494837 | 7.4:-52723558 | MS.gene043717:CDS |
AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7.4:-52722031 | MS.gene043717:CDS |
TTAGCTGCAACTCTTTGGAA+TGG | 0.508092 | 7.4:+52723357 | None:intergenic |
TCTAAAGATATGAACAATGA+AGG | 0.545794 | 7.4:+52721967 | None:intergenic |
CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7.4:+52722855 | None:intergenic |
AGAAGCTTCTTCTTTCACTT+GGG | 0.559960 | 7.4:+52721815 | None:intergenic |
TGATCTCACAACTGGATGGA+AGG | 0.573601 | 7.4:-52722062 | MS.gene043717:CDS |
TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7.4:-52722163 | MS.gene043717:CDS |
TTTGTGGAGAAATATGGAGA+AGG | 0.578281 | 7.4:-52723594 | MS.gene043717:CDS |
GATCATCACTCTCTAGCTCA+TGG | 0.584001 | 7.4:-52723462 | MS.gene043717:CDS |
AGTTTGATCTCACAACTGGA+TGG | 0.597924 | 7.4:-52722066 | MS.gene043717:CDS |
GTAGCAACTTTGCATCATGC+TGG | 0.604292 | 7.4:-52723246 | MS.gene043717:CDS |
GTGAAAGAAGAAGCTTCTCA+AGG | 0.611713 | 7.4:-52721810 | MS.gene043717:CDS |
CTATTGCTTCCAATTTCACG+TGG | 0.616486 | 7.4:+52723297 | None:intergenic |
TGGTTGATGGAATTCAAAAG+AGG | 0.624709 | 7.4:+52723317 | None:intergenic |
TGGATGGAAGGCATTTGCAA+AGG | 0.644602 | 7.4:-52722050 | MS.gene043717:CDS |
TGTCATGCGTGCATCATACG+TGG | 0.677837 | 7.4:-52722841 | MS.gene043717:CDS |
TGCACGCATGACAACAACAA+AGG | 0.693553 | 7.4:+52722851 | None:intergenic |
CATGCTGGCAGAGAGTGCAA+AGG | 0.694988 | 7.4:-52723231 | MS.gene043717:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTATCACAAATGTTTAT+TGG | - | chr7.4:52723058-52723077 | MS.gene043717:intron | 15.0% |
!!! | ATTTATTTGTTGTTAAATGA+AGG | - | chr7.4:52723279-52723298 | MS.gene043717:CDS | 15.0% |
!!! | CTTTGATAATAATAATTCTT+AGG | + | chr7.4:52722823-52722842 | None:intergenic | 15.0% |
!! | AAAAATTAGAAAGTTCTTGT+TGG | + | chr7.4:52723167-52723186 | None:intergenic | 20.0% |
!! | AATAATAATTCTTAGGAGTT+AGG | + | chr7.4:52722816-52722835 | None:intergenic | 20.0% |
!! | TGCAAAATGGAAATTAAATT+TGG | - | chr7.4:52721880-52721899 | MS.gene043717:intron | 20.0% |
!! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7.4:52721893-52721912 | MS.gene043717:intron | 20.0% |
!!! | TAAAAAGTGATGGAAAAATA+TGG | - | chr7.4:52721903-52721922 | MS.gene043717:intron | 20.0% |
! | AAACAAAATGAACGAAATGA+TGG | - | chr7.4:52722843-52722862 | MS.gene043717:CDS | 25.0% |
! | AAATATGGTTTGAAAAAGGT+TGG | - | chr7.4:52721918-52721937 | MS.gene043717:intron | 25.0% |
! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.4:52721857-52721876 | MS.gene043717:intron | 25.0% |
! | GAATGGATAATTTATCTCTA+AGG | + | chr7.4:52722044-52722063 | None:intergenic | 25.0% |
! | GGAAAAATATGGTTTGAAAA+AGG | - | chr7.4:52721914-52721933 | MS.gene043717:intron | 25.0% |
! | TCTAAAGATATGAACAATGA+AGG | + | chr7.4:52723451-52723470 | None:intergenic | 25.0% |
! | TGAAGTTGAGAAATTGAATA+AGG | - | chr7.4:52722147-52722166 | MS.gene043717:CDS | 25.0% |
! | TGCAAAATTTGAACACAATA+AGG | + | chr7.4:52722471-52722490 | None:intergenic | 25.0% |
! | TGTTGTTAAATGAAGGAATT+TGG | - | chr7.4:52723286-52723305 | MS.gene043717:CDS | 25.0% |
!! | TATTGTGTTCAAATTTTGCA+GGG | - | chr7.4:52722471-52722490 | MS.gene043717:intron | 25.0% |
!! | TTATTGTGTTCAAATTTTGC+AGG | - | chr7.4:52722470-52722489 | MS.gene043717:intron | 25.0% |
AAGGACAATAACTTGAAAGT+TGG | - | chr7.4:52723384-52723403 | MS.gene043717:CDS | 30.0% | |
AGAAAGTTTGTGGAGAAATA+TGG | - | chr7.4:52721815-52721834 | MS.gene043717:CDS | 30.0% | |
ATCAAACTGTAGTCCTTTAA+GGG | + | chr7.4:52723337-52723356 | None:intergenic | 30.0% | |
ATTGTTCAACATCTCAAAGT+AGG | - | chr7.4:52723493-52723512 | MS.gene043717:CDS | 30.0% | |
CAGAATATACCAGTTAAGTT+TGG | - | chr7.4:52723219-52723238 | MS.gene043717:intron | 30.0% | |
GATATTTGAAAAGCAGAAGA+TGG | + | chr7.4:52721979-52721998 | None:intergenic | 30.0% | |
TATTTCTCCACAAACTTTCT+TGG | + | chr7.4:52721815-52721834 | None:intergenic | 30.0% | |
TGCAACTTACCATAAGAAAT+CGG | + | chr7.4:52722604-52722623 | None:intergenic | 30.0% | |
! | AATTTCCATTTTGCACCATT+TGG | + | chr7.4:52721875-52721894 | None:intergenic | 30.0% |
! | CGTTTGTCTTTTCTTTTGAT+TGG | - | chr7.4:52723196-52723215 | MS.gene043717:intron | 30.0% |
!! | AATTGACATACAGTTTTAGC+TGG | + | chr7.4:52722373-52722392 | None:intergenic | 30.0% |
!! | TTTGATTTGGATAAGAAGAG+AGG | - | chr7.4:52723252-52723271 | MS.gene043717:CDS | 30.0% |
!!! | AAACGACATACATTTTTAGC+AGG | - | chr7.4:52722401-52722420 | MS.gene043717:intron | 30.0% |
AACTGTATGTCAATTCAACG+TGG | - | chr7.4:52722378-52722397 | MS.gene043717:intron | 35.0% | |
AAGAACCAATTGGTATCAAC+GGG | + | chr7.4:52722759-52722778 | None:intergenic | 35.0% | |
ACTATTGTAGAACAGCTATC+AGG | - | chr7.4:52722343-52722362 | MS.gene043717:intron | 35.0% | |
AGAAGCTTCTTCTTTCACTT+GGG | + | chr7.4:52723603-52723622 | None:intergenic | 35.0% | |
CAAGAACCAATTGGTATCAA+CGG | + | chr7.4:52722760-52722779 | None:intergenic | 35.0% | |
CTATTGTAGAACAGCTATCA+GGG | - | chr7.4:52722344-52722363 | MS.gene043717:intron | 35.0% | |
CTTTCTCAACAAGAACCAAT+TGG | + | chr7.4:52722769-52722788 | None:intergenic | 35.0% | |
GATCAAACTGTAGTCCTTTA+AGG | + | chr7.4:52723338-52723357 | None:intergenic | 35.0% | |
GGTAAGTTGCAAAGAAAGTT+TGG | - | chr7.4:52722613-52722632 | MS.gene043717:intron | 35.0% | |
TATTTCCCGTTGATACCAAT+TGG | - | chr7.4:52722751-52722770 | MS.gene043717:intron | 35.0% | |
TGGTAAGACACACTTTGATT+TGG | - | chr7.4:52723239-52723258 | MS.gene043717:CDS | 35.0% | |
TGTGTCTTACCAAACTTAAC+TGG | + | chr7.4:52723231-52723250 | None:intergenic | 35.0% | |
TGTTCTACAATAGTTCCGAA+GGG | + | chr7.4:52722337-52722356 | None:intergenic | 35.0% | |
TTCTTTCCATGATGTGTAGA+TGG | - | chr7.4:52722298-52722317 | MS.gene043717:intron | 35.0% | |
TTTGTGGAGAAATATGGAGA+AGG | - | chr7.4:52721821-52721840 | MS.gene043717:CDS | 35.0% | |
!! | TGGTTGATGGAATTCAAAAG+AGG | + | chr7.4:52722101-52722120 | None:intergenic | 35.0% |
!!! | TCTTTTTAGCTGCAACTCTT+TGG | + | chr7.4:52722066-52722085 | None:intergenic | 35.0% |
AAAGAATTGCCCAGCTCAAA+TGG | - | chr7.4:52722785-52722804 | MS.gene043717:intron | 40.0% | |
ACTGCCCTCTAACTATTACT+TGG | - | chr7.4:52722973-52722992 | MS.gene043717:intron | 40.0% | |
AGACTCCAAATGGTGCAAAA+TGG | - | chr7.4:52721867-52721886 | MS.gene043717:intron | 40.0% | |
AGTTTGATCTCACAACTGGA+TGG | - | chr7.4:52723349-52723368 | MS.gene043717:CDS | 40.0% | |
ATCCTGATTAGGTACTTTGC+AGG | + | chr7.4:52723312-52723331 | None:intergenic | 40.0% | |
CAGCCCAAGTAATAGTTAGA+GGG | + | chr7.4:52722980-52722999 | None:intergenic | 40.0% | |
CTAATCAGGATGACCCTTAA+AGG | - | chr7.4:52723321-52723340 | MS.gene043717:CDS | 40.0% | |
CTACAGTTTGATCTCACAAC+TGG | - | chr7.4:52723345-52723364 | MS.gene043717:CDS | 40.0% | |
CTATTGCTTCCAATTTCACG+TGG | + | chr7.4:52722121-52722140 | None:intergenic | 40.0% | |
CTGCCCTCTAACTATTACTT+GGG | - | chr7.4:52722974-52722993 | MS.gene043717:intron | 40.0% | |
CTGTTCTACAATAGTTCCGA+AGG | + | chr7.4:52722338-52722357 | None:intergenic | 40.0% | |
GAGAAGCTTCTTCTTTCACT+TGG | + | chr7.4:52723604-52723623 | None:intergenic | 40.0% | |
GTGAAAGAAGAAGCTTCTCA+AGG | - | chr7.4:52723605-52723624 | MS.gene043717:CDS | 40.0% | |
TTCCAATTTCACGTGGTTGA+TGG | + | chr7.4:52722114-52722133 | None:intergenic | 40.0% | |
TTCCATCAACCACGTGAAAT+TGG | - | chr7.4:52722109-52722128 | MS.gene043717:CDS | 40.0% | |
! | CTTTAAGGGTCATCCTGATT+AGG | + | chr7.4:52723323-52723342 | None:intergenic | 40.0% |
! | TTAGCTGCAACTCTTTGGAA+TGG | + | chr7.4:52722061-52722080 | None:intergenic | 40.0% |
AATTGCCCAGCTCAAATGGA+GGG | - | chr7.4:52722789-52722808 | MS.gene043717:intron | 45.0% | |
CGCATGACAACAACAAAGGA+TGG | + | chr7.4:52722563-52722582 | None:intergenic | 45.0% | |
CTTCGTCCATCTACACATCA+TGG | + | chr7.4:52722307-52722326 | None:intergenic | 45.0% | |
GCAGCCCAAGTAATAGTTAG+AGG | + | chr7.4:52722981-52723000 | None:intergenic | 45.0% | |
GGACGAAGTTCAAATCCCTT+CGG | - | chr7.4:52722319-52722338 | MS.gene043717:intron | 45.0% | |
GTAGCAACTTTGCATCATGC+TGG | - | chr7.4:52722169-52722188 | MS.gene043717:CDS | 45.0% | |
TGATCTCACAACTGGATGGA+AGG | - | chr7.4:52723353-52723372 | MS.gene043717:CDS | 45.0% | |
TGCACGCATGACAACAACAA+AGG | + | chr7.4:52722567-52722586 | None:intergenic | 45.0% | |
! | AACTACGTATGCACTGACGA+AGG | - | chr7.4:52722643-52722662 | MS.gene043717:intron | 45.0% |
! | GATCATCACTCTCTAGCTCA+TGG | - | chr7.4:52721953-52721972 | MS.gene043717:CDS | 45.0% |
!! | CGTGGAACACCGATTTCTTA+TGG | - | chr7.4:52722592-52722611 | MS.gene043717:intron | 45.0% |
!! | TGGATGGAAGGCATTTGCAA+AGG | - | chr7.4:52723365-52723384 | MS.gene043717:CDS | 45.0% |
GAATTGCCCAGCTCAAATGG+AGG | - | chr7.4:52722788-52722807 | MS.gene043717:intron | 50.0% | |
TAGGACCCTCCATTTGAGCT+GGG | + | chr7.4:52722797-52722816 | None:intergenic | 50.0% | |
TGTCATGCGTGCATCATACG+TGG | - | chr7.4:52722574-52722593 | MS.gene043717:intron | 50.0% | |
TTAGGACCCTCCATTTGAGC+TGG | + | chr7.4:52722798-52722817 | None:intergenic | 50.0% | |
! | GGCCTGCAAAGTACCTAATC+AGG | - | chr7.4:52723307-52723326 | MS.gene043717:CDS | 50.0% |
! | CATGCTGGCAGAGAGTGCAA+AGG | - | chr7.4:52722184-52722203 | MS.gene043717:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 52721806 | 52723631 | 52721806 | ID=MS.gene043717 |
chr7.4 | mRNA | 52721806 | 52723631 | 52721806 | ID=MS.gene043717.t1;Parent=MS.gene043717 |
chr7.4 | exon | 52723232 | 52723631 | 52723232 | ID=MS.gene043717.t1.exon1;Parent=MS.gene043717.t1 |
chr7.4 | CDS | 52723232 | 52723631 | 52723232 | ID=cds.MS.gene043717.t1;Parent=MS.gene043717.t1 |
chr7.4 | exon | 52722824 | 52722945 | 52722824 | ID=MS.gene043717.t1.exon2;Parent=MS.gene043717.t1 |
chr7.4 | CDS | 52722824 | 52722945 | 52722824 | ID=cds.MS.gene043717.t1;Parent=MS.gene043717.t1 |
chr7.4 | exon | 52721927 | 52722215 | 52721927 | ID=MS.gene043717.t1.exon3;Parent=MS.gene043717.t1 |
chr7.4 | CDS | 52721927 | 52722215 | 52721927 | ID=cds.MS.gene043717.t1;Parent=MS.gene043717.t1 |
chr7.4 | exon | 52721806 | 52721843 | 52721806 | ID=MS.gene043717.t1.exon4;Parent=MS.gene043717.t1 |
chr7.4 | CDS | 52721806 | 52721843 | 52721806 | ID=cds.MS.gene043717.t1;Parent=MS.gene043717.t1 |
Gene Sequence |
Protein sequence |