Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043723.t1 | AES78884.2 | 87.1 | 294 | 36 | 2 | 28 | 320 | 1 | 293 | 1.20E-139 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043723.t1 | Q8L3W1 | 28.2 | 340 | 190 | 7 | 13 | 307 | 6 | 336 | 4.6e-23 | 110.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043723.t1 | G7KVV7 | 87.1 | 294 | 36 | 2 | 28 | 320 | 1 | 293 | 8.7e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043723.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043723.t1 | MTR_7g050590 | 87.075 | 294 | 36 | 2 | 28 | 320 | 1 | 293 | 0.0 | 514 |
| MS.gene043723.t1 | MTR_7g050560 | 75.075 | 333 | 64 | 3 | 1 | 332 | 1 | 315 | 1.68e-177 | 494 |
| MS.gene043723.t1 | MTR_7g050580 | 71.084 | 332 | 79 | 3 | 1 | 332 | 1 | 315 | 1.32e-166 | 466 |
| MS.gene043723.t1 | MTR_7g050710 | 69.231 | 325 | 90 | 6 | 1 | 320 | 1 | 320 | 1.03e-154 | 437 |
| MS.gene043723.t1 | MTR_3g098790 | 68.536 | 321 | 91 | 4 | 1 | 320 | 1 | 312 | 6.88e-152 | 429 |
| MS.gene043723.t1 | MTR_7g050720 | 64.396 | 323 | 95 | 9 | 1 | 309 | 1 | 317 | 1.26e-136 | 390 |
| MS.gene043723.t1 | MTR_1g035460 | 36.050 | 319 | 165 | 10 | 28 | 324 | 1 | 302 | 1.91e-53 | 180 |
| MS.gene043723.t1 | MTR_8g103940 | 37.700 | 313 | 161 | 9 | 11 | 307 | 37 | 331 | 2.39e-53 | 182 |
| MS.gene043723.t1 | MTR_7g050640 | 69.912 | 113 | 34 | 0 | 1 | 113 | 1 | 113 | 1.73e-49 | 161 |
| MS.gene043723.t1 | MTR_1g108780 | 33.898 | 295 | 162 | 9 | 29 | 307 | 13 | 290 | 1.69e-44 | 158 |
| MS.gene043723.t1 | MTR_3g061320 | 35.117 | 299 | 164 | 9 | 10 | 306 | 9 | 279 | 1.70e-41 | 146 |
| MS.gene043723.t1 | MTR_5g044670 | 30.968 | 310 | 193 | 6 | 13 | 315 | 16 | 311 | 6.00e-41 | 146 |
| MS.gene043723.t1 | MTR_3g061370 | 32.558 | 301 | 172 | 8 | 11 | 306 | 7 | 281 | 1.67e-36 | 133 |
| MS.gene043723.t1 | MTR_3g061350 | 31.230 | 317 | 174 | 7 | 1 | 306 | 1 | 284 | 2.19e-36 | 132 |
| MS.gene043723.t1 | MTR_4g119990 | 31.494 | 308 | 190 | 8 | 11 | 306 | 13 | 311 | 7.53e-33 | 125 |
| MS.gene043723.t1 | MTR_3g061340 | 30.537 | 298 | 174 | 9 | 10 | 306 | 9 | 274 | 8.35e-33 | 123 |
| MS.gene043723.t1 | MTR_6g043890 | 30.952 | 294 | 177 | 7 | 11 | 293 | 13 | 291 | 1.14e-32 | 124 |
| MS.gene043723.t1 | MTR_3g061310 | 32.343 | 303 | 173 | 12 | 10 | 306 | 9 | 285 | 1.59e-32 | 122 |
| MS.gene043723.t1 | MTR_3g061330 | 52.941 | 102 | 46 | 1 | 10 | 111 | 9 | 108 | 3.22e-30 | 115 |
| MS.gene043723.t1 | MTR_3g061290 | 52.941 | 102 | 46 | 1 | 10 | 111 | 9 | 108 | 2.95e-29 | 111 |
| MS.gene043723.t1 | MTR_1g035620 | 29.139 | 302 | 178 | 8 | 10 | 305 | 6 | 277 | 5.28e-28 | 113 |
| MS.gene043723.t1 | MTR_1g050845 | 29.766 | 299 | 168 | 8 | 10 | 305 | 6 | 265 | 5.71e-28 | 115 |
| MS.gene043723.t1 | MTR_1g035570 | 31.987 | 297 | 168 | 9 | 22 | 307 | 14 | 287 | 5.96e-28 | 112 |
| MS.gene043723.t1 | MTR_1g035640 | 32.039 | 309 | 175 | 11 | 13 | 315 | 9 | 288 | 1.28e-27 | 112 |
| MS.gene043723.t1 | MTR_5g070440 | 27.445 | 317 | 161 | 8 | 5 | 310 | 13 | 271 | 9.62e-26 | 104 |
| MS.gene043723.t1 | MTR_3g005480 | 26.384 | 307 | 155 | 8 | 12 | 310 | 20 | 263 | 3.04e-25 | 102 |
| MS.gene043723.t1 | MTR_3g005490 | 26.384 | 307 | 168 | 7 | 5 | 310 | 13 | 262 | 8.28e-25 | 101 |
| MS.gene043723.t1 | MTR_6g061070 | 28.931 | 318 | 200 | 8 | 7 | 306 | 12 | 321 | 1.12e-24 | 104 |
| MS.gene043723.t1 | MTR_1g021270 | 26.205 | 332 | 193 | 10 | 9 | 294 | 13 | 338 | 4.57e-23 | 100 |
| MS.gene043723.t1 | MTR_3g005420 | 26.421 | 299 | 173 | 7 | 12 | 310 | 288 | 539 | 2.08e-22 | 98.2 |
| MS.gene043723.t1 | MTR_3g005420 | 31.579 | 152 | 93 | 3 | 3 | 149 | 30 | 175 | 4.41e-17 | 82.4 |
| MS.gene043723.t1 | MTR_1g034240 | 41.414 | 99 | 58 | 0 | 13 | 111 | 7 | 105 | 4.57e-21 | 93.6 |
| MS.gene043723.t1 | MTR_3g061220 | 40.164 | 122 | 57 | 3 | 1 | 122 | 1 | 106 | 8.48e-21 | 86.7 |
| MS.gene043723.t1 | MTR_4g068320 | 40.952 | 105 | 60 | 1 | 13 | 115 | 6 | 110 | 1.09e-20 | 92.4 |
| MS.gene043723.t1 | MTR_3g005460 | 26.537 | 309 | 170 | 8 | 11 | 310 | 260 | 520 | 2.63e-20 | 92.0 |
| MS.gene043723.t1 | MTR_3g005460 | 35.036 | 137 | 75 | 3 | 12 | 146 | 24 | 148 | 1.19e-19 | 90.1 |
| MS.gene043723.t1 | MTR_3g005495 | 28.772 | 285 | 136 | 8 | 12 | 294 | 242 | 461 | 3.01e-20 | 91.7 |
| MS.gene043723.t1 | MTR_3g005495 | 38.372 | 86 | 53 | 0 | 29 | 114 | 29 | 114 | 2.16e-16 | 80.1 |
| MS.gene043723.t1 | MTR_1g021360 | 27.645 | 293 | 186 | 8 | 11 | 294 | 182 | 457 | 3.18e-20 | 91.7 |
| MS.gene043723.t1 | MTR_1g021440 | 26.149 | 348 | 204 | 12 | 11 | 312 | 21 | 361 | 8.30e-20 | 89.7 |
| MS.gene043723.t1 | MTR_1g035650 | 31.905 | 210 | 126 | 5 | 10 | 218 | 6 | 199 | 2.65e-19 | 85.1 |
| MS.gene043723.t1 | MTR_1g035480 | 43.689 | 103 | 55 | 2 | 9 | 111 | 13 | 112 | 2.98e-19 | 84.3 |
| MS.gene043723.t1 | MTR_1g021400 | 22.590 | 332 | 211 | 9 | 11 | 306 | 28 | 349 | 3.68e-19 | 87.4 |
| MS.gene043723.t1 | MTR_1g035440 | 42.857 | 105 | 59 | 1 | 11 | 114 | 13 | 117 | 2.00e-18 | 83.6 |
| MS.gene043723.t1 | MTR_3g005440 | 34.783 | 115 | 69 | 1 | 27 | 141 | 34 | 142 | 3.55e-18 | 85.1 |
| MS.gene043723.t1 | MTR_3g005440 | 33.058 | 121 | 78 | 1 | 12 | 132 | 241 | 358 | 8.35e-14 | 72.4 |
| MS.gene043723.t1 | MTR_1g035520 | 29.210 | 291 | 176 | 10 | 28 | 294 | 87 | 371 | 4.97e-18 | 84.3 |
| MS.gene043723.t1 | MTR_1g021380 | 25.501 | 349 | 169 | 13 | 12 | 306 | 16 | 327 | 3.09e-17 | 81.6 |
| MS.gene043723.t1 | MTR_3g005420 | 31.579 | 152 | 93 | 3 | 3 | 149 | 11 | 156 | 4.74e-17 | 82.0 |
| MS.gene043723.t1 | MTR_1g021350 | 25.163 | 306 | 202 | 6 | 11 | 299 | 20 | 315 | 1.15e-16 | 80.1 |
| MS.gene043723.t1 | MTR_1g034210 | 37.374 | 99 | 60 | 1 | 13 | 111 | 7 | 103 | 2.13e-16 | 79.0 |
| MS.gene043723.t1 | MTR_1g034210 | 37.374 | 99 | 60 | 1 | 13 | 111 | 7 | 103 | 3.90e-16 | 79.0 |
| MS.gene043723.t1 | MTR_1g033740 | 27.717 | 184 | 118 | 4 | 9 | 192 | 18 | 186 | 6.38e-16 | 75.5 |
| MS.gene043723.t1 | MTR_1g035510 | 46.429 | 84 | 42 | 2 | 28 | 111 | 1 | 81 | 1.20e-14 | 72.4 |
| MS.gene043723.t1 | MTR_1g035500 | 39.048 | 105 | 61 | 2 | 7 | 111 | 19 | 120 | 1.43e-14 | 71.6 |
| MS.gene043723.t1 | MTR_1g098450 | 25.321 | 312 | 179 | 9 | 13 | 307 | 12 | 286 | 5.56e-13 | 68.9 |
| MS.gene043723.t1 | MTR_1g021440 | 33.333 | 93 | 61 | 1 | 11 | 103 | 21 | 112 | 6.44e-12 | 65.5 |
| MS.gene043723.t1 | MTR_1g021440 | 33.333 | 93 | 61 | 1 | 11 | 103 | 21 | 112 | 6.92e-12 | 65.5 |
| MS.gene043723.t1 | MTR_1g021440 | 33.333 | 93 | 61 | 1 | 11 | 103 | 21 | 112 | 1.47e-11 | 65.5 |
| MS.gene043723.t1 | MTR_1g021320 | 33.696 | 92 | 61 | 0 | 11 | 102 | 23 | 114 | 2.25e-11 | 65.5 |
| MS.gene043723.t1 | MTR_1g021320 | 34.409 | 93 | 59 | 2 | 11 | 103 | 182 | 272 | 3.26e-11 | 64.7 |
| MS.gene043723.t1 | MTR_1g035470 | 40.449 | 89 | 50 | 2 | 28 | 116 | 1 | 86 | 2.27e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043723.t1 | AT3G18990 | 28.530 | 347 | 186 | 9 | 13 | 310 | 6 | 339 | 1.20e-31 | 122 |
| MS.gene043723.t1 | AT3G18990 | 28.986 | 345 | 181 | 10 | 13 | 307 | 6 | 336 | 1.65e-31 | 121 |
| MS.gene043723.t1 | AT4G01580 | 40.870 | 115 | 68 | 0 | 2 | 116 | 19 | 133 | 2.54e-23 | 95.5 |
| MS.gene043723.t1 | AT3G18960 | 40.000 | 115 | 69 | 0 | 2 | 116 | 19 | 133 | 3.67e-22 | 92.8 |
| MS.gene043723.t1 | AT3G18960 | 40.000 | 115 | 69 | 0 | 2 | 116 | 19 | 133 | 4.08e-22 | 92.8 |
| MS.gene043723.t1 | AT1G49475 | 38.400 | 125 | 74 | 2 | 6 | 128 | 25 | 148 | 6.58e-22 | 91.7 |
| MS.gene043723.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 29 | 116 | 9 | 96 | 6.51e-18 | 80.5 |
| MS.gene043723.t1 | AT5G09780 | 25.817 | 306 | 205 | 10 | 7 | 303 | 13 | 305 | 9.76e-13 | 68.2 |
Find 47 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAGTGGAAATTAAATT+TGG | 0.244297 | 7.4:-52873602 | MS.gene043723:CDS |
| TATTTCTGCACAAACTTTCT+TGG | 0.265809 | 7.4:+52873670 | None:intergenic |
| TTGCAGCAGCTAAAGCTAAT+AGG | 0.287785 | 7.4:-52873411 | MS.gene043723:CDS |
| GAAAGGGTAATTTATCTCTA+AGG | 0.313872 | 7.4:+52873441 | None:intergenic |
| CAGAATATACCACGTTCTTT+TGG | 0.319667 | 7.4:-52872448 | MS.gene043723:CDS |
| AGGTGTTAAATCAAGGAGTT+TGG | 0.351103 | 7.4:-52872378 | MS.gene043723:CDS |
| AATTTCCACTTTGCACCATT+TGG | 0.355722 | 7.4:+52873610 | None:intergenic |
| AAGAAGCTACTGGAGGATAA+AGG | 0.359372 | 7.4:-52872049 | None:intergenic |
| CTTCATCAACCACGTGAAAT+CGG | 0.381082 | 7.4:-52873307 | MS.gene043723:CDS |
| TGGTAATAGACACTTTGATT+TGG | 0.389318 | 7.4:-52872428 | MS.gene043723:CDS |
| TGGCAAAATATGGTTTGAAA+AGG | 0.393696 | 7.4:-52873569 | MS.gene043723:CDS |
| CTTTAGCTGCTGCAACCCTT+TGG | 0.398095 | 7.4:+52873419 | None:intergenic |
| AGGTTTATTTCCTTGATCAT+TGG | 0.433965 | 7.4:+52873384 | None:intergenic |
| AAATATGGTTTGAAAAGGGT+TGG | 0.440218 | 7.4:-52873564 | MS.gene043723:CDS |
| TGCAGCAGCTAAAGCTAATA+GGG | 0.447144 | 7.4:-52873410 | MS.gene043723:CDS |
| TCGCATTTGATAAACCTTCT+CGG | 0.457980 | 7.4:+52873647 | None:intergenic |
| CAAATAAAAGAAGAAGCTAC+TGG | 0.464258 | 7.4:-52872059 | MS.gene043723:CDS |
| GATATTTGAAAAGCAGAAGA+TGG | 0.469802 | 7.4:+52873506 | None:intergenic |
| AAGTGGATTGGCTTCAACTC+AGG | 0.489022 | 7.4:+52874753 | None:intergenic |
| CTGCTGCAACCCTTTGGAAA+GGG | 0.490756 | 7.4:+52873425 | None:intergenic |
| GGCAAAATATGGTTTGAAAA+GGG | 0.493730 | 7.4:-52873568 | MS.gene043723:CDS |
| ATATATCTAAAGACTCCAAA+TGG | 0.497009 | 7.4:-52873625 | MS.gene043723:CDS |
| GATAAATTACCCTTTCCAAA+GGG | 0.497908 | 7.4:-52873434 | MS.gene043723:CDS |
| TCTATCAGTAAGAATAGAAA+AGG | 0.504745 | 7.4:-52872343 | MS.gene043723:CDS |
| ATCAAGGAGTTTGGACTGCA+AGG | 0.505879 | 7.4:-52872369 | MS.gene043723:CDS |
| TAGAGTTGGAAAATTGCAAA+AGG | 0.507000 | 7.4:-52873269 | MS.gene043723:CDS |
| CAAGGAAATAAACCTCCAAA+TGG | 0.511352 | 7.4:-52873376 | MS.gene043723:CDS |
| AATAGGGTCTCCAATGATCA+AGG | 0.514757 | 7.4:-52873394 | MS.gene043723:CDS |
| GAGGACAATAAATTGAAAGT+TGG | 0.518859 | 7.4:-52872280 | MS.gene043723:CDS |
| GCTGCTGCAACCCTTTGGAA+AGG | 0.547388 | 7.4:+52873424 | None:intergenic |
| AGATAAATTACCCTTTCCAA+AGG | 0.557884 | 7.4:-52873435 | MS.gene043723:CDS |
| ACGTGGTTGATGAAGTTCAA+AGG | 0.562344 | 7.4:+52873315 | None:intergenic |
| CTTGCTCAAAATCTTCATGA+AGG | 0.562390 | 7.4:-52874717 | MS.gene043723:CDS |
| GGACTAAAATTTGAACTCAC+AGG | 0.563798 | 7.4:-52872322 | MS.gene043723:CDS |
| GAGTATCACTCTCTAGCTCA+TGG | 0.575939 | 7.4:-52873529 | MS.gene043723:CDS |
| TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7.4:-52872415 | MS.gene043723:CDS |
| TGAACTCACAGGTGGATGGA+AGG | 0.586048 | 7.4:-52872311 | MS.gene043723:CDS |
| AATTTGAACTCACAGGTGGA+TGG | 0.587922 | 7.4:-52872315 | MS.gene043723:CDS |
| CTACTGCTTCCGATTTCACG+TGG | 0.606234 | 7.4:+52873298 | None:intergenic |
| CTAAAATTTGAACTCACAGG+TGG | 0.610484 | 7.4:-52872319 | MS.gene043723:CDS |
| AGACTCCAAATGGTGCAAAG+TGG | 0.616755 | 7.4:-52873615 | MS.gene043723:CDS |
| TTTGTGCAGAAATACCGAGA+AGG | 0.623919 | 7.4:-52873661 | MS.gene043723:CDS |
| TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7.4:-52872299 | MS.gene043723:CDS |
| TGCATGCATGACAACAACAA+AGG | 0.674317 | 7.4:+52873035 | None:intergenic |
| ATAAAAGAAGAAGCTACTGG+AGG | 0.685560 | 7.4:-52872056 | MS.gene043723:CDS |
| CATACTGACAGAGAATCCAA+AGG | 0.719746 | 7.4:-52873232 | MS.gene043723:intron |
| TGTCTATTACCAAAAGAACG+TGG | 0.758155 | 7.4:+52872439 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAATTGTTGAAAT+TGG | + | chr7.4:52872634-52872653 | None:intergenic | 10.0% |
| !! | TATATAAATCATTATTAGAT+AGG | + | chr7.4:52873038-52873057 | None:intergenic | 10.0% |
| !!! | TTTAAAACTATTTAATATGA+AGG | + | chr7.4:52874286-52874305 | None:intergenic | 10.0% |
| !! | AAATATGTATTAATCAAGAT+CGG | + | chr7.4:52874120-52874139 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTTCATAGTTTAT+GGG | - | chr7.4:52872562-52872581 | MS.gene043723:intron | 15.0% |
| !! | GTAAGTTACAATGAAATATA+TGG | - | chr7.4:52873835-52873854 | MS.gene043723:intron | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7.4:52873231-52873250 | MS.gene043723:intron | 20.0% |
| !!! | AGAACTCATGAAATTATTTT+TGG | + | chr7.4:52873073-52873092 | None:intergenic | 20.0% |
| !!! | AGGTCAATAATTTTTTAAGT+CGG | + | chr7.4:52872853-52872872 | None:intergenic | 20.0% |
| !!! | ATTTAGTTGATTAGTTTGTT+AGG | - | chr7.4:52873980-52873999 | MS.gene043723:intron | 20.0% |
| !!! | GATTTGTTTTTCATAGTTTA+TGG | - | chr7.4:52872561-52872580 | MS.gene043723:intron | 20.0% |
| ! | AAACCAGAAAGTAATTAACT+TGG | - | chr7.4:52872694-52872713 | MS.gene043723:intron | 25.0% |
| ! | AACCAGAAAGTAATTAACTT+GGG | - | chr7.4:52872695-52872714 | MS.gene043723:intron | 25.0% |
| ! | AATTGTAGTTAACTATAGCT+GGG | + | chr7.4:52872779-52872798 | None:intergenic | 25.0% |
| ! | AGATGAAAAGAGAAAGAAAA+CGG | + | chr7.4:52874144-52874163 | None:intergenic | 25.0% |
| ! | AGCTATAGTTAACTACAATT+CGG | - | chr7.4:52872779-52872798 | MS.gene043723:intron | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.4:52873195-52873214 | MS.gene043723:intron | 25.0% |
| ! | ATATTTCATTGTAACTTACC+AGG | + | chr7.4:52873834-52873853 | None:intergenic | 25.0% |
| ! | ATTATCTTGAAAAAGTGGAT+TGG | + | chr7.4:52872082-52872101 | None:intergenic | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+TGG | + | chr7.4:52872087-52872106 | None:intergenic | 25.0% |
| ! | GAGAAGAGAATTTAAGTAAA+AGG | + | chr7.4:52872141-52872160 | None:intergenic | 25.0% |
| ! | GTAATGATATGAACAATTTC+CGG | - | chr7.4:52872962-52872981 | MS.gene043723:intron | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | - | chr7.4:52873241-52873260 | MS.gene043723:CDS | 25.0% |
| ! | TAAGTTTACACTTGAATAGA+AGG | + | chr7.4:52872415-52872434 | None:intergenic | 25.0% |
| ! | TAATGATATGAACAATTTCC+GGG | - | chr7.4:52872963-52872982 | MS.gene043723:intron | 25.0% |
| ! | TCTATCAGTAAGAATAGAAA+AGG | - | chr7.4:52874477-52874496 | MS.gene043723:intron | 25.0% |
| ! | TGCAAAATTGGAACATAATA+AGG | + | chr7.4:52873692-52873711 | None:intergenic | 25.0% |
| ! | TGCAAAGTGGAAATTAAATT+TGG | - | chr7.4:52873218-52873237 | MS.gene043723:intron | 25.0% |
| !! | ACTAAAGTTTTACTTTCCAA+CGG | + | chr7.4:52872907-52872926 | None:intergenic | 25.0% |
| !! | TATTATGTTCCAATTTTGCA+GGG | - | chr7.4:52873692-52873711 | MS.gene043723:intron | 25.0% |
| !! | TTATTATGTTCCAATTTTGC+AGG | - | chr7.4:52873691-52873710 | MS.gene043723:intron | 25.0% |
| !!! | AAGTTAATTACTTTCTGGTT+TGG | + | chr7.4:52872695-52872714 | None:intergenic | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | chr7.4:52873256-52873275 | MS.gene043723:CDS | 30.0% | |
| AACCCAAGTTAATTACTTTC+TGG | + | chr7.4:52872700-52872719 | None:intergenic | 30.0% | |
| AAGACACAATCTTATACCTT+TGG | + | chr7.4:52873607-52873626 | None:intergenic | 30.0% | |
| AAGTATTTGAATAACGCTTG+AGG | - | chr7.4:52874042-52874061 | MS.gene043723:intron | 30.0% | |
| AATCTTTCTCTACTCTTTAC+TGG | - | chr7.4:52873877-52873896 | MS.gene043723:intron | 30.0% | |
| AGATAAATTACCCTTTCCAA+AGG | - | chr7.4:52873385-52873404 | MS.gene043723:CDS | 30.0% | |
| AGGTTTATTTCCTTGATCAT+TGG | + | chr7.4:52873439-52873458 | None:intergenic | 30.0% | |
| ATAGTAATGTAATGTCTCCT+AGG | - | chr7.4:52872314-52872333 | MS.gene043723:CDS | 30.0% | |
| CAAATAAAAGAAGAAGCTAC+TGG | - | chr7.4:52874761-52874780 | MS.gene043723:CDS | 30.0% | |
| GAAAGGGTAATTTATCTCTA+AGG | + | chr7.4:52873382-52873401 | None:intergenic | 30.0% | |
| GAATTGTAGTTAACTATAGC+TGG | + | chr7.4:52872780-52872799 | None:intergenic | 30.0% | |
| GAGGACAATAAATTGAAAGT+TGG | - | chr7.4:52874540-52874559 | MS.gene043723:intron | 30.0% | |
| GATAAATTACCCTTTCCAAA+GGG | - | chr7.4:52873386-52873405 | MS.gene043723:CDS | 30.0% | |
| GATATTTGAAAAGCAGAAGA+TGG | + | chr7.4:52873317-52873336 | None:intergenic | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | chr7.4:52873252-52873271 | MS.gene043723:CDS | 30.0% | |
| GTAAAGAGTAGAGAAAGATT+TGG | + | chr7.4:52873877-52873896 | None:intergenic | 30.0% | |
| TAGAGTTGGAAAATTGCAAA+AGG | - | chr7.4:52873551-52873570 | MS.gene043723:CDS | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | chr7.4:52873251-52873270 | MS.gene043723:CDS | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | chr7.4:52874392-52874411 | MS.gene043723:intron | 30.0% | |
| ! | CAGTAGCTTCTTCTTTTATT+TGG | + | chr7.4:52874763-52874782 | None:intergenic | 30.0% |
| ! | CATTTGTCTTTCCTTTTACT+TGG | - | chr7.4:52874349-52874368 | MS.gene043723:intron | 30.0% |
| ! | CTCTTTTCTTCAATTGTTGT+TGG | - | chr7.4:52872753-52872772 | MS.gene043723:intron | 30.0% |
| ! | CTTTTGAACTCTATGTAGAA+GGG | + | chr7.4:52872287-52872306 | None:intergenic | 30.0% |
| ! | GTTTTTCATAGTTTATGGGT+TGG | - | chr7.4:52872566-52872585 | MS.gene043723:intron | 30.0% |
| ! | TAATCATGATGTCACTTGTT+AGG | + | chr7.4:52874223-52874242 | None:intergenic | 30.0% |
| ! | TATTTCTGCACAAACTTTCT+TGG | + | chr7.4:52873153-52873172 | None:intergenic | 30.0% |
| !! | ATTGATTTTGCCATCCAAAA+AGG | - | chr7.4:52872361-52872380 | MS.gene043723:CDS | 30.0% |
| !! | TAGTTTGTTAGGTGATTGAT+AGG | - | chr7.4:52873991-52874010 | MS.gene043723:intron | 30.0% |
| !! | TTTGATTTGGATAAGAAGAG+AGG | - | chr7.4:52874405-52874424 | MS.gene043723:intron | 30.0% |
| !!! | CATTTTCAGGTGTTAAATCA+AGG | - | chr7.4:52874435-52874454 | MS.gene043723:intron | 30.0% |
| AATTTCCACTTTGCACCATT+TGG | + | chr7.4:52873213-52873232 | None:intergenic | 35.0% | |
| ACTTTAGTTAACTACCGTTG+AGG | - | chr7.4:52872919-52872938 | MS.gene043723:intron | 35.0% | |
| AGGATACATGTTATCTTACC+CGG | + | chr7.4:52872984-52873003 | None:intergenic | 35.0% | |
| AGGTGTTAAATCAAGGAGTT+TGG | - | chr7.4:52874442-52874461 | MS.gene043723:intron | 35.0% | |
| ATAAAAGAAGAAGCTACTGG+AGG | - | chr7.4:52874764-52874783 | MS.gene043723:CDS | 35.0% | |
| ATAGAACCTGTTAATATGCC+AGG | + | chr7.4:52873004-52873023 | None:intergenic | 35.0% | |
| ATGTATCCTGGCATATTAAC+AGG | - | chr7.4:52872995-52873014 | MS.gene043723:intron | 35.0% | |
| CAAGGAAATAAACCTCCAAA+TGG | - | chr7.4:52873444-52873463 | MS.gene043723:CDS | 35.0% | |
| CCTTCTACATAGAGTTCAAA+AGG | - | chr7.4:52872285-52872304 | MS.gene043723:CDS | 35.0% | |
| CTAAAATTTGAACTCACAGG+TGG | - | chr7.4:52874501-52874520 | MS.gene043723:intron | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | chr7.4:52872103-52872122 | MS.gene043723:intron | 35.0% | |
| GGACTAAAATTTGAACTCAC+AGG | - | chr7.4:52874498-52874517 | MS.gene043723:intron | 35.0% | |
| GGTATATTCTGCCAAGTAAA+AGG | + | chr7.4:52874363-52874382 | None:intergenic | 35.0% | |
| TATGCACTAAGAGTTGTTAG+AGG | - | chr7.4:52873953-52873972 | MS.gene043723:intron | 35.0% | |
| TCGCATTTGATAAACCTTCT+CGG | + | chr7.4:52873176-52873195 | None:intergenic | 35.0% | |
| TGCTCAAAAACATACCTCAA+CGG | + | chr7.4:52872936-52872955 | None:intergenic | 35.0% | |
| TGGAAAGATTCTGCATAAGA+TGG | + | chr7.4:52874743-52874762 | None:intergenic | 35.0% | |
| TGTCTATTACCAAAAGAACG+TGG | + | chr7.4:52874384-52874403 | None:intergenic | 35.0% | |
| ! | CAGAATATACCACGTTCTTT+TGG | - | chr7.4:52874372-52874391 | MS.gene043723:intron | 35.0% |
| ! | CCTTTTGAACTCTATGTAGA+AGG | + | chr7.4:52872288-52872307 | None:intergenic | 35.0% |
| ! | CTACAATTTTCACCATTTGG+AGG | + | chr7.4:52873459-52873478 | None:intergenic | 35.0% |
| ! | GAGAGGAGATATTCATTTTC+AGG | - | chr7.4:52874422-52874441 | MS.gene043723:intron | 35.0% |
| ! | GCTCTACAATTTTCACCATT+TGG | + | chr7.4:52873462-52873481 | None:intergenic | 35.0% |
| !! | CCAAAAGTGTCAAAAGCAAA+TGG | + | chr7.4:52872241-52872260 | None:intergenic | 35.0% |
| !! | CCATTTGCTTTTGACACTTT+TGG | - | chr7.4:52872238-52872257 | MS.gene043723:CDS | 35.0% |
| !! | CGTTAAACATCGTTTTAACC+TGG | - | chr7.4:52873813-52873832 | MS.gene043723:intron | 35.0% |
| !!! | AGCAGTAGTTGTTTTAGAGT+TGG | - | chr7.4:52873537-52873556 | MS.gene043723:CDS | 35.0% |
| AACACAACATGCATAGACCT+AGG | + | chr7.4:52872334-52872353 | None:intergenic | 40.0% | |
| AATAGGGTCTCCAATGATCA+AGG | - | chr7.4:52873426-52873445 | MS.gene043723:CDS | 40.0% | |
| AATTTGAACTCACAGGTGGA+TGG | - | chr7.4:52874505-52874524 | MS.gene043723:intron | 40.0% | |
| ACACTTGAATAGAAGGCAAG+CGG | + | chr7.4:52872408-52872427 | None:intergenic | 40.0% | |
| ACCGATCTTCAAAGTGTGAA+AGG | + | chr7.4:52872826-52872845 | None:intergenic | 40.0% | |
| AGAACACGCTTTCTCATGTT+TGG | + | chr7.4:52872197-52872216 | None:intergenic | 40.0% | |
| CACTTCTTTCCCTGCAAAAT+TGG | + | chr7.4:52873704-52873723 | None:intergenic | 40.0% | |
| CATACTGACAGAGAATCCAA+AGG | - | chr7.4:52873588-52873607 | MS.gene043723:CDS | 40.0% | |
| CTATGCATGTTGTGTTCACA+AGG | - | chr7.4:52872338-52872357 | MS.gene043723:CDS | 40.0% | |
| CTATGTCGCTAATGTCTTCA+TGG | - | chr7.4:52872608-52872627 | MS.gene043723:intron | 40.0% | |
| CTTCATCAACCACGTGAAAT+CGG | - | chr7.4:52873513-52873532 | MS.gene043723:CDS | 40.0% | |
| GGGTAAGATAACATGTATCC+TGG | - | chr7.4:52872983-52873002 | MS.gene043723:intron | 40.0% | |
| TGCAGCAGCTAAAGCTAATA+GGG | - | chr7.4:52873410-52873429 | MS.gene043723:CDS | 40.0% | |
| TGCATGCATGACAACAACAA+AGG | + | chr7.4:52873788-52873807 | None:intergenic | 40.0% | |
| TTGAATAACGCTTGAGGAGA+GGG | - | chr7.4:52874048-52874067 | MS.gene043723:intron | 40.0% | |
| TTGCAGCAGCTAAAGCTAAT+AGG | - | chr7.4:52873409-52873428 | MS.gene043723:CDS | 40.0% | |
| TTTGAATAACGCTTGAGGAG+AGG | - | chr7.4:52874047-52874066 | MS.gene043723:intron | 40.0% | |
| TTTGTGCAGAAATACCGAGA+AGG | - | chr7.4:52873159-52873178 | MS.gene043723:intron | 40.0% | |
| ! | GCCTTTCACACTTTGAAGAT+CGG | - | chr7.4:52872822-52872841 | MS.gene043723:intron | 40.0% |
| !! | ACGTGGTTGATGAAGTTCAA+AGG | + | chr7.4:52873508-52873527 | None:intergenic | 40.0% |
| !! | CTGCTCTAAAAAGTTCCCAA+GGG | - | chr7.4:52872871-52872890 | MS.gene043723:intron | 40.0% |
| AGACTCCAAATGGTGCAAAG+TGG | - | chr7.4:52873205-52873224 | MS.gene043723:intron | 45.0% | |
| ATCAAGGAGTTTGGACTGCA+AGG | - | chr7.4:52874451-52874470 | MS.gene043723:intron | 45.0% | |
| CACTTGAATAGAAGGCAAGC+GGG | + | chr7.4:52872407-52872426 | None:intergenic | 45.0% | |
| TAGGATTGTCCCTTTGAGCT+GGG | + | chr7.4:52874204-52874223 | None:intergenic | 45.0% | |
| TGAATAACGCTTGAGGAGAG+GGG | - | chr7.4:52874049-52874068 | MS.gene043723:intron | 45.0% | |
| TGCCATCCAAAAAGGTCTAG+CGG | - | chr7.4:52872369-52872388 | MS.gene043723:CDS | 45.0% | |
| TTAGCGACATAGATGAGCAG+AGG | + | chr7.4:52872600-52872619 | None:intergenic | 45.0% | |
| TTAGGATTGTCCCTTTGAGC+TGG | + | chr7.4:52874205-52874224 | None:intergenic | 45.0% | |
| ! | ATTGCTCAACAGGGACTAGT+TGG | + | chr7.4:52874177-52874196 | None:intergenic | 45.0% |
| ! | GAGTATCACTCTCTAGCTCA+TGG | - | chr7.4:52873291-52873310 | MS.gene043723:CDS | 45.0% |
| !! | AAGTGGATTGGCTTCAACTC+AGG | + | chr7.4:52872070-52872089 | None:intergenic | 45.0% |
| !! | CCTGCTCTAAAAAGTTCCCA+AGG | - | chr7.4:52872870-52872889 | MS.gene043723:intron | 45.0% |
| !!! | CCTTGGGAACTTTTTAGAGC+AGG | + | chr7.4:52872873-52872892 | None:intergenic | 45.0% |
| AACGGCAGTTAAGTGCCCTT+GGG | + | chr7.4:52872889-52872908 | None:intergenic | 50.0% | |
| AGCAATTGTGCCCAGCTCAA+AGG | - | chr7.4:52874191-52874210 | MS.gene043723:intron | 50.0% | |
| CTACTGCTTCCGATTTCACG+TGG | + | chr7.4:52873525-52873544 | None:intergenic | 50.0% | |
| CTGGGCACAATTGCTCAACA+GGG | + | chr7.4:52874186-52874205 | None:intergenic | 50.0% | |
| CTTTAGCTGCTGCAACCCTT+TGG | + | chr7.4:52873404-52873423 | None:intergenic | 50.0% | |
| GCAATTGTGCCCAGCTCAAA+GGG | - | chr7.4:52874192-52874211 | MS.gene043723:intron | 50.0% | |
| TGAACTCACAGGTGGATGGA+AGG | - | chr7.4:52874509-52874528 | MS.gene043723:intron | 50.0% | |
| ! | CTGCTGCAACCCTTTGGAAA+GGG | + | chr7.4:52873398-52873417 | None:intergenic | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | chr7.4:52874521-52874540 | MS.gene043723:intron | 50.0% |
| !!! | TTTTGGTTTCCTAGCACCCG+AGG | - | chr7.4:52872255-52872274 | MS.gene043723:CDS | 50.0% |
| ATGTAGAAGGGCAACCGCCT+CGG | + | chr7.4:52872275-52872294 | None:intergenic | 55.0% | |
| CAACGGCAGTTAAGTGCCCT+TGG | + | chr7.4:52872890-52872909 | None:intergenic | 55.0% | |
| GCTGGGCACAATTGCTCAAC+AGG | + | chr7.4:52874187-52874206 | None:intergenic | 55.0% | |
| ! | CGCCGCTAGACCTTTTTGGA+TGG | + | chr7.4:52872374-52872393 | None:intergenic | 55.0% |
| ! | GCTGCTGCAACCCTTTGGAA+AGG | + | chr7.4:52873399-52873418 | None:intergenic | 55.0% |
| !! | CAAGGGCACTTAACTGCCGT+TGG | - | chr7.4:52872888-52872907 | MS.gene043723:intron | 55.0% |
| TGGTTTCCTAGCACCCGAGG+CGG | - | chr7.4:52872258-52872277 | MS.gene043723:CDS | 60.0% | |
| TGTAGAAGGGCAACCGCCTC+GGG | + | chr7.4:52872274-52872293 | None:intergenic | 60.0% | |
| ! | GCTGCGCCGCTAGACCTTTT+TGG | + | chr7.4:52872378-52872397 | None:intergenic | 60.0% |
| GGGCAACCGCCTCGGGTGCT+AGG | + | chr7.4:52872267-52872286 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52872052 | 52874790 | 52872052 | ID=MS.gene043723 |
| chr7.4 | mRNA | 52872052 | 52874790 | 52872052 | ID=MS.gene043723.t1;Parent=MS.gene043723 |
| chr7.4 | exon | 52874710 | 52874790 | 52874710 | ID=MS.gene043723.t1.exon1;Parent=MS.gene043723.t1 |
| chr7.4 | CDS | 52874710 | 52874790 | 52874710 | ID=cds.MS.gene043723.t1;Parent=MS.gene043723.t1 |
| chr7.4 | exon | 52873233 | 52873698 | 52873233 | ID=MS.gene043723.t1.exon2;Parent=MS.gene043723.t1 |
| chr7.4 | CDS | 52873233 | 52873698 | 52873233 | ID=cds.MS.gene043723.t1;Parent=MS.gene043723.t1 |
| chr7.4 | exon | 52873008 | 52873129 | 52873008 | ID=MS.gene043723.t1.exon3;Parent=MS.gene043723.t1 |
| chr7.4 | CDS | 52873008 | 52873129 | 52873008 | ID=cds.MS.gene043723.t1;Parent=MS.gene043723.t1 |
| chr7.4 | exon | 52872176 | 52872467 | 52872176 | ID=MS.gene043723.t1.exon4;Parent=MS.gene043723.t1 |
| chr7.4 | CDS | 52872176 | 52872467 | 52872176 | ID=cds.MS.gene043723.t1;Parent=MS.gene043723.t1 |
| chr7.4 | exon | 52872052 | 52872089 | 52872052 | ID=MS.gene043723.t1.exon5;Parent=MS.gene043723.t1 |
| chr7.4 | CDS | 52872052 | 52872089 | 52872052 | ID=cds.MS.gene043723.t1;Parent=MS.gene043723.t1 |
| Gene Sequence |
| Protein sequence |
